lowQualScore                  :                                                                                 33333333333333333333333                                                                   
lowQualScore                  :      3    44     5    33     2  2 2 55555 2   2 666    2  33     2  888888888 1 66666666666666666666666   6666   2       2 2  22     777777  2  666 2   666666 2          
lowQualScore                  :      .    ..     .    ..     .  . . ..... .   . ...    .  ..     .  ......... . .......................   ....   .       . .  ..     ......  .  ... .   ...... .          
lowQualScore                  :      3    22     7    77     5  4 4 99999 2   2 111    2  11     1  444444444 8 88888888888888888888888   2222   0       0 0  88     000000  1  666 1   444444 2          
consensus                     : AAATA-CGGG--TAAAA-TCAA--TGCGG-AT-T-T-----T-AAA-C---TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
Reference ( gi|4750 )         : AAATA-CAGG--TAAAA-TCAA--TGCGG-AT-T-T-----T-AAA-C---TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4751                       : AAATA-CAGG--TAAAA-TCAA--TGCGG-AT-T-T-----T-AAA-C---TCCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4752                       : AAATA-CAGG--TAAAA-TCAA--TGCGG-AT-T-T-----T-AAA-C---TCCC-GA--TTCGC-AA---------TGG-------G-------T-------GGT----GAA-TAGGCTT-A-TT--GTTCG---CCAAA-AA---T-CAC------C-CATCTTCTTT
gi|4753                       : AAAAA-CAGG--TAAAA-TCAA--TGCGG-AT-T-T-----T-AAA-C---TCCC-GA--TTCGA-AA---------CGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-AA---T-CAC------C-TATCTTTTTT
gi|4754                       : AAATA-CAGG--TAAAAGTCAA--TGCGA-AT-T-T-----TTAAA-CC--TCCC-GA--TTCGCGAA---------TGA-------A-------T-------CGT----GAA-TACGGAT-A-TT---TTCG---CC-AA-GA---TTCAC------C-CATCTTTTCT
gi|4755                       : AAATA-CAGG--T-AAA-TGAA--TGCGGAAT-T-T-----T-AAA-C---TCCC-GA--TTCGC-AATCGGTACCCTGA-------G-------T-------CGT----GAA-TAGGC---A-CTCCGCTCA----T-AA-AG---T-CAC------C-CATCTTCTTT
gi|4756                       : AAGTA-CGGG--TACCA-ACAC--TGCAG-AT-T-T-----T-AAT-C---TCCT-AA--TTTGC-GA---------TCG-------G-------TGACCGATCGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-TC---T-CAT------T-CATCTTCTTT
gi|4757                       : AAATAACGTG--TAACT-TCAA--TGCGG-AT-T-G-----T-AAA-C---TCCC-GA--TTCGC-GA---------TCGCTTTCAAA-------T-------GGT----GAA-TTAGCTT-A-TT--GTACG------AA-AAGC-T-CAT------T-CATATTCTTT
gi|4758                       : AAATA-CGGG--TAACA-TCGA--TGCAG-AT-A-TACCGGT-AAA-G---TCCC-GA--TTCGC-GA---------TCGCTTCCCAG-------T-------TGT----GAA-TGGGGTT-A-TT--GTTCG---C
gi|4759                       : AAATA--AAA--TAAAA-TAAAATTGCAA-AC-----------AAA-CAACTCCC-GA--CTTCC-AG---------TTG-------G-------TACTCAT-TGTT---GAA-TAGGTTT-A-TT----TCA---CT-AA-AC---T-CAC------C-CATCTTCTTT
gi|4760                       : AAATA-TGGG--TAACA-TCAA--TACTA-AT-T-T-----T-ACA-T---TCAT-TA--TCAGC-GA---------TCG-------G-------TGCTCAATCAT----GAA-TATGCTT-A-TT--GTTTG----C-AA-AGCTCT-CACATAATTCACATCTTCT
gi|4761                       :  AATA-CAGGAGTAAAAATCAA--TGTGG--T-T-T-----T-AAA-C---TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GGATTAGGCTT-ATTT--GTTCG---CC-AA-AA---T-CAC------C-TATCTTCTT
gi|4762                       :  AATA-CAGG--TAAAA-TCAA--TGC-G-AT-TGT-----T-AAA-C---TCCC-GA---TCGC-AA---------TGG-------T-------T-------CGT----GAA--AGGCAT-A-TG--GGTCG---C-----AA---T-CAC------C-CATCTTCTTT
gi|4763                       :          G--TAAGA-T-AA----CAG-ATAT-T-----T-AAAAT---TCCC-TAATTTCGC-AA---------TTG-------G-------T-------CGT----GAA-T-TGCTTAA-TT--GGTTGGACTC-AATAA---T-CAC------C-CATCTTTT
gi|4764                       :                 A-TCAA--TGCGG-AT-T-C-----T----------------------C-AA---------TGG-------A-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4765                       :                     AA--TGCGG-AT-T-T-----T-AAA-C---TTCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCAT-T-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4766                       :                           CGG-AT-T-T-----T-GAG-T---TCCA-GA--TTTGT-AA---------TCGCTTCCCAG-------T-------TGT----GAA-TAGGCTA-A-TT--ATTGG---CA-AA-GT---T-CAC------C-CATCTTCTTT
gi|4767                       :                                T-T-T-----T-AAA-C---TCCC-GA--TTCGT-GA---------TCG-------CCTCCCATT-------CGT----GAA-TAGGCTT-A-TT--GTACA---C---A-AA---T-
gi|4768                       :                                           -AAA-C---CCTCTGA--TTTGT-AA---------TCT-------G-------TACC----CGTTGTTGAA-TAAGCTT-A-TT--GTTCA---CT-AA-CT---T-CAC------C-CATCTTCTTT
gi|4769                       :                                                              TCGT-AA---------TG----------------T-------TGT----GAA-TAGGCTC-A-CT--GTTCG---CC-AA-AG---T-CAC------C-CATTTTCT
gi|4770                       :                                                                                         -------T-------CGT----AAA-TAGGCTA-A-TT--GTTCG---CC-AA-AC---T-TGC------C-CATCTTCTTT





Alignments
lowQualScore                  :                                                                                                           33333333333333333333333                                                                   
lowQualScore                  :                                    3 0  44     5          2 2 2 55555 2   2 2    2  22     2  888888888 1 44444444444444444444444   6666   1       1 1  22     555555  2  666 2   666666 2          
lowQualScore                  :                                    . .  ..     .          . . . ..... .   . .    .  ..     .  ......... . .......................   ....   .       . .  ..     ......  .  ... .   ...... .          
lowQualScore                  :                                    3 7  22     7          4 4 4 99999 2   1 1    1  99     0  000000000 2 00000000000000000000000   0000   9       9 9  66     666666  0  222 0   111111 1          
consensus                     :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
Reference ( family-824 )      :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4750                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4751                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4752                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------GGT----GAA-TAGGCTT-A-TT--GTTCG---CCAAA-AA---T-CAC------C-CATCTTCTTT
gi|4753                       :                               AAAAA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGA-AA---------CGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-AA---T-CAC------C-TATCTTTTTT
gi|4754                       :                               AAATA-CAGG--TAAAAGTCAATGCGAA-T-T-T-----TTAAA-CCTCCC-GA--TTCGCGAA---------TGA-------A-------T-------CGT----GAA-TACGGAT-A-TT---TTCG---CC-AA-GA---TTCAC------C-CATCTTTTCT
gi|4755                       :                               AAATA-CAGG--TAAA--TGAATGCGGAAT-T-T-----T-AAA-C-TCCC-GA--TTCGC-AATCGGTACCCTGA-------G-------T-------CGT----GAA-TAGGC---A-CTCCGCTCA----T-AA-AG---T-CAC------C-CATCTTCTTT
gi|4756                       :                               AAGTA-CGGG--TACCA-ACACTGCAGA-T-T-T-----T-AAT-C-TCCT-AA--TTTGC-GA---------TCG-------G-------TGACCGATCGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-TC---T-CAT------T-CATCTTCTTT
gi|4757                       :                               AAATAACGTG--TAACT-TCAATGCGGA-T-T-G-----T-AAA-C-TCCC-GA--TTCGC-GA---------TCGCTTTCAAA-------T-------GGT----GAA-TTAGCTT-A-TT--GTACG------AA-AAGC-T-CAT------T-CATATTCTTT
gi|4758                       :                               AAATA-CGGG--TAACA-TCGATGCAGA-T-A-TACCGGT-AAA-G-TCCC-GA--TTCGC-GA---------TCGCTTCCCAG-------T-------TGT----GAA-TGGGGTT-A-TT--GTTCG---C
gi|4759                       :                                                                         AA-C-TCCC-GA--CTTCC-AG---------TTG-------G-------TACTCAT-TGTT---GAA-TAGGTTT-A-TT----TCA---CT-AA-AC---T-CAC------C-CATCTTCTTT
gi|4760                       : aaataaaataaaataaaattgcaaacaaacAAATA-TGGG--TAACA-TCAATACTAA-T-T-T-----T-ACA-T-TCAT-TA--TCAGC-GA---------TCG-------G-------TGCTCAATCAT----GAA-TATGCTT-A-TT--GTTTG----C-AA-AGCTCT-CACATAATTCACATCTTCT
gi|4761                       :                                AATA-CAGGAGTAAAAATCAATGTGG--T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GGATTAGGCTT-ATTT--GTTCG---CC-AA-AA---T-CAC------C-TATCTTCTT
gi|4762                       :                                AATA-CAGG--TAAAA-TCAATGC-GA-T-TGT-----T-AAA-C-TCCC-GA---TCGC-AA---------TGG-------T-------T-------CGT----GAA--AGGCAT-A-TG--GGTCG---C-----AA---T-CAC------C-CATCTTCTTT
gi|4763                       :                                        G--TAAGA-T-AA--CAGA-TAT-T-----T-AAAAT-TCCC-TAATTTCGC-AA---------TTG-------G-------T-------CGT----GAA-T-TGCTTAA-TT--GGTTGGACTC-AATAA---T-CAC------C-CATCTTTT
gi|4764                       :                                               A-TCAATGCGGA-T-T-C-----T--------------------C-AA---------TGG-------A-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4765                       :                                                   AATGCGGA-T-T-T-----T-AAA-C-TTCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCAT-T-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4766                       :                                                       CGGA-T-T-T-----T-GAG-T-TCCA-GA--TTTGT-AA---------TCGCTTCCCAG-------T-------TGT----GAA-TAGGCTA-A-TT--ATTGG---CA-AA-GT---T-CAC------C-CATCTTCTTT
gi|4767                       :                                                           -T-T-T-----T-AAA-C-TCCC-GA--TTCGT-GA---------TCG-------CCTCCCATT-------CGT----GAA-TAGGCTT-A-TT--GTACA---C---A-AA---T-
gi|4768                       :                                                                       -AAA-C-CCTCTGA--TTTGT-AA---------TCT-------G-------TACC----CGTTGTTGAA-TAAGCTT-A-TT--GTTCA---CT-AA-CT---T-CAC------C-CATCTTCTTT
gi|4769                       :                                                                                        TCGT-AA---------TG----------------T-------TGT----GAA-TAGGCTC-A-CT--GTTCG---CC-AA-AG---T-CAC------C-CATTTTCT
gi|4770                       :                                                                                                                   -------T-------CGT----AAA-TAGGCTA-A-TT--GTTCG---CC-AA-AC---T-TGC------C-CATCTTCTTT





Alignments
lowQualScore                  :                                                                                                           33333333333333333333333                                                                   
lowQualScore                  :                                    3 0  44     5          2 2 2 55555 2   2 2    2  22     2  888888888 1 44444444444444444444444   6666   1       1 1  22     555555  2  666 2   666666 2          
lowQualScore                  :                                    . .  ..     .          . . . ..... .   . .    .  ..     .  ......... . .......................   ....   .       . .  ..     ......  .  ... .   ...... .          
lowQualScore                  :                                    3 7  22     7          4 4 4 99999 2   1 1    1  99     0  000000000 2 00000000000000000000000   0000   9       9 9  66     666666  0  222 0   111111 1          
consensus                     :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
Reference ( family-824 )      :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4750                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4751                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4752                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------GGT----GAA-TAGGCTT-A-TT--GTTCG---CCAAA-AA---T-CAC------C-CATCTTCTTT
gi|4753                       :                               AAAAA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGA-AA---------CGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-AA---T-CAC------C-TATCTTTTTT
gi|4754                       :                               AAATA-CAGG--TAAAAGTCAATGCGAA-T-T-T-----TTAAA-CCTCCC-GA--TTCGCGAA---------TGA-------A-------T-------CGT----GAA-TACGGAT-A-TT---TTCG---CC-AA-GA---TTCAC------C-CATCTTTTCT
gi|4755                       :                               AAATA-CAGG--TAAA--TGAATGCGGAAT-T-T-----T-AAA-C-TCCC-GA--TTCGC-AATCGGTACCCTGA-------G-------T-------CGT----GAA-TAGGC---A-CTCCGCTCA----T-AA-AG---T-CAC------C-CATCTTCTTT
gi|4756                       :                               AAGTA-CGGG--TACCA-ACACTGCAGA-T-T-T-----T-AAT-C-TCCT-AA--TTTGC-GA---------TCG-------G-------TGACCGATCGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-TC---T-CAT------T-CATCTTCTTT
gi|4757                       :                               AAATAACGTG--TAACT-TCAATGCGGA-T-T-G-----T-AAA-C-TCCC-GA--TTCGC-GA---------TCGCTTTCAAA-------T-------GGT----GAA-TTAGCTT-A-TT--GTACG------AA-AAGC-T-CAT------T-CATATTCTTT
gi|4758                       :                               AAATA-CGGG--TAACA-TCGATGCAGA-T-A-TACCGGT-AAA-G-TCCC-GA--TTCGC-GA---------TCGCTTCCCAG-------T-------TGT----GAA-TGGGGTT-A-TT--GTTCG---C
gi|4759                       :                                                                         AA-C-TCCC-GA--CTTCC-AG---------TTG-------G-------TACTCAT-TGTT---GAA-TAGGTTT-A-TT----TCA---CT-AA-AC---T-CAC------C-CATCTTCTTT
gi|4760                       : aaataaaataaaataaaattgcaaacaaacAAATA-TGGG--TAACA-TCAATACTAA-T-T-T-----T-ACA-T-TCAT-TA--TCAGC-GA---------TCG-------G-------TGCTCAATCAT----GAA-TATGCTT-A-TT--GTTTG----C-AA-AGCTCT-CACATAATTCACATCTTCT
gi|4761                       :                                AATA-CAGGAGTAAAAATCAATGTGG--T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GGATTAGGCTT-ATTT--GTTCG---CC-AA-AA---T-CAC------C-TATCTTCTT
gi|4762                       :                                AATA-CAGG--TAAAA-TCAATGC-GA-T-TGT-----T-AAA-C-TCCC-GA---TCGC-AA---------TGG-------T-------T-------CGT----GAA--AGGCAT-A-TG--GGTCG---C-----AA---T-CAC------C-CATCTTCTTT
gi|4763                       :                                        G--TAAGA-T-AA--CAGA-TAT-T-----T-AAAAT-TCCC-TAATTTCGC-AA---------TTG-------G-------T-------CGT----GAA-T-TGCTTAA-TT--GGTTGGACTC-AATAA---T-CAC------C-CATCTTTT
gi|4764                       :                                               A-TCAATGCGGA-T-T-C-----T--------------------C-AA---------TGG-------A-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4765                       :                                                   AATGCGGA-T-T-T-----T-AAA-C-TTCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCAT-T-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4766                       :                                                       CGGA-T-T-T-----T-GAG-T-TCCA-GA--TTTGT-AA---------TCGCTTCCCAG-------T-------TGT----GAA-TAGGCTA-A-TT--ATTGG---CA-AA-GT---T-CAC------C-CATCTTCTTT
gi|4767                       :                                                           -T-T-T-----T-AAA-C-TCCC-GA--TTCGT-GA---------TCG-------CCTCCCATT-------CGT----GAA-TAGGCTT-A-TT--GTACA---C---A-AA---T-
gi|4768                       :                                                                       -AAA-C-CCTCTGA--TTTGT-AA---------TCT-------G-------TACC----CGTTGTTGAA-TAAGCTT-A-TT--GTTCA---CT-AA-CT---T-CAC------C-CATCTTCTTT
gi|4769                       :                                                                                        TCGT-AA---------TG----------------T-------TGT----GAA-TAGGCTC-A-CT--GTTCG---CC-AA-AG---T-CAC------C-CATTTTCT
gi|4770                       :                                                                                                                   -------T-------CGT----AAA-TAGGCTA-A-TT--GTTCG---CC-AA-AC---T-TGC------C-CATCTTCTTT


blockSeqs                     :                                    A    AG     G          A A G ACCGG T   A C    T  AT     G  TCGGTACCC G GTGACCGAT                 TGTT   T       A T  CC     GACTC   T  CTC T   ATAATT A
blockSeqs                     :                                    .    .      A          . . . .     .   . .    .  .      .  .         G CTTTCAAAT                 T      .       . .  .      CCA     .  GC  .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         G CTTCCCAGT                 .      .       . .  .      CC      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         G GTGCTCAAT                 .      .       . .  .      CA      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         G CTTCCCAGT                 .      .       . .  .      CC      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         C CCTCCCATT                 .      .       . .  .      CA      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         C GTACTCAT                  .      .       . .  .      CT      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         C GTACC                     .      .       . .  .      CC      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         T GT                        .      .       . .  .      CC      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         C GT                        .      .       . .  .      CC      .  .   .   .      .
blockSeqs                     :                                    .    .      .          . . . .     .   . .    .  .      .  .         G GT                        .      .       . .  .      CA      .  .   .   .      .
blockSeqs                     :                                         .      .          . . . .     .   . .    .  .      .  .         G AT                        .      .       . .  .      CT      .  .   .   .      .
blockSeqs                     :                                                .          . . . .     .   . .    .  .      .  .         T GT                        .      .       . .  .      CC      .  .   .   .      .
blockSeqs                     :                                                           . . . .     .   . .    .  .      .  .         G GT                        .      .       . .  .      CC      .  .   .   .      .
blockSeqs                     :                                                           . . . .     .   . .    .  .      .  .         G TT                        .      .       . .  .      T       .  .   .   .      .
blockSeqs                     :                                                           . . . .     .   . .    .  .      .  .         C GT                        .      .       . .  .      C       .  .   .   .      .
blockSeqs                     :                                                                       .   . .    .  .      .  .         C AT                        .      .       . .  .      C       .  .   .   .      .
blockSeqs                     :                                                                           . .    .  .      .  .         C GT                        .      .       . .  .      C       .  .   .   .      .
blockSeqs                     :                                                                                            .  .         G T                         .      .       . .  .      .       .  .   .           
blockSeqs                     :                                                                                                                                     .      .       . .  .                                 


blockSeqCons                  :                               
originalCons                  :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
finalCons                     :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT





Alignments
lowQualScore                  :                                                                                                           33333333333333333333333                                                                   
lowQualScore                  :                                    3 0  44     5          2 2 2 55555 2   2 2    2  22     2  888888888 1 44444444444444444444444   6666   1       1 1  22     555555  2  666 2   666666 2          
lowQualScore                  :                                    . .  ..     .          . . . ..... .   . .    .  ..     .  ......... . .......................   ....   .       . .  ..     ......  .  ... .   ...... .          
lowQualScore                  :                                    3 7  22     7          4 4 4 99999 2   1 1    1  99     0  000000000 2 00000000000000000000000   0000   9       9 9  66     666666  0  222 0   111111 1          
consensus                     :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
Reference ( family-824 )      :                               AAATA-CGGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4750                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4751                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4752                       :                               AAATA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------GGT----GAA-TAGGCTT-A-TT--GTTCG---CCAAA-AA---T-CAC------C-CATCTTCTTT
gi|4753                       :                               AAAAA-CAGG--TAAAA-TCAATGCGGA-T-T-T-----T-AAA-C-TCCC-GA--TTCGA-AA---------CGG-------G-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-AA---T-CAC------C-TATCTTTTTT
gi|4754                       :                               AAATA-CAGG--TAAAAGTCAATGCGAA-T-T-T-----TTAAA-CCTCCC-GA--TTCGCGAA---------TGA-------A-------T-------CGT----GAA-TACGGAT-A-TT---TTCG---CC-AA-GA---TTCAC------C-CATCTTTTCT
gi|4755                       :                               AAATA-CAGG--TAAA--TGAATGCGGAAT-T-T-----T-AAA-C-TCCC-GA--TTCGC-AATCGGTACCCTGA-------G-------T-------CGT----GAA-TAGGC---A-CTCCGCTCA----T-AA-AG---T-CAC------C-CATCTTCTTT
gi|4756                       :                               AAGTA-CGGG--TACCA-ACACTGCAGA-T-T-T-----T-AAT-C-TCCT-AA--TTTGC-GA---------TCG-------G-------TGACCGATCGT----GAA-TAGGCTT-A-TT--GTTCG---CA-AA-TC---T-CAT------T-CATCTTCTTT
gi|4757                       :                               AAATAACGTG--TAACT-TCAATGCGGA-T-T-G-----T-AAA-C-TCCC-GA--TTCGC-GA---------TCGCTTTCAAA-------T-------GGT----GAA-TTAGCTT-A-TT--GTACG------AA-AAGC-T-CAT------T-CATATTCTTT
gi|4758                       :                               AAATA-CGGG--TAACA-TCGATGCAGA-T-A-TACCGGT-AAA-G-TCCC-GA--TTCGC-GA---------TCGCTTCCCAG-------T-------TGT----GAA-TGGGGTT-A-TT--GTTCG---C
gi|4759                       :                                                                         AA-C-TCCC-GA--CTTCC-AG---------TTG-------G-------TACTCAT-TGTT---GAA-TAGGTTT-A-TT----TCA---CT-AA-AC---T-CAC------C-CATCTTCTTT
gi|4760                       : aaataaaataaaataaaattgcaaacaaacAAATA-TGGG--TAACA-TCAATACTAA-T-T-T-----T-ACA-T-TCAT-TA--TCAGC-GA---------TCG-------G-------TGCTCAATCAT----GAA-TATGCTT-A-TT--GTTTG----C-AA-AGCTCT-CACATAATTCACATCTTCT
gi|4761                       :                                AATA-CAGGAGTAAAAATCAATGTGG--T-T-T-----T-AAA-C-TCCC-GA--TTCGC-AA---------TGG-------G-------T-------CGT----GGATTAGGCTT-ATTT--GTTCG---CC-AA-AA---T-CAC------C-TATCTTCTT
gi|4762                       :                                AATA-CAGG--TAAAA-TCAATGC-GA-T-TGT-----T-AAA-C-TCCC-GA---TCGC-AA---------TGG-------T-------T-------CGT----GAA--AGGCAT-A-TG--GGTCG---C-----AA---T-CAC------C-CATCTTCTTT
gi|4763                       :                                        G--TAAGA-T-AA--CAGA-TAT-T-----T-AAAAT-TCCC-TAATTTCGC-AA---------TTG-------G-------T-------CGT----GAA-T-TGCTTAA-TT--GGTTGGACTC-AATAA---T-CAC------C-CATCTTTT
gi|4764                       :                                               A-TCAATGCGGA-T-T-C-----T--------------------C-AA---------TGG-------A-------T-------CGT----GAA-TAGGCTT-A-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4765                       :                                                   AATGCGGA-T-T-T-----T-AAA-C-TTCC-GA--TTCGC-AA---------TGA-------G-------T-------CGT----GAA-TAGGCAT-T-TT--GTTCG---CC-AA-AA---T-CAC------C-CATCTTCTTT
gi|4766                       :                                                       CGGA-T-T-T-----T-GAG-T-TCCA-GA--TTTGT-AA---------TCGCTTCCCAG-------T-------TGT----GAA-TAGGCTA-A-TT--ATTGG---CA-AA-GT---T-CAC------C-CATCTTCTTT
gi|4767                       :                                                           -T-T-T-----T-AAA-C-TCCC-GA--TTCGT-GA---------TCG-------CCTCCCATT-------CGT----GAA-TAGGCTT-A-TT--GTACA---C---A-AA---T-
gi|4768                       :                                                                       -AAA-C-CCTCTGA--TTTGT-AA---------TCT-------G-------TACC----CGTTGTTGAA-TAAGCTT-A-TT--GTTCA---CT-AA-CT---T-CAC------C-CATCTTCTTT
gi|4769                       :                                                                                        TCGT-AA---------TG----------------T-------TGT----GAA-TAGGCTC-A-CT--GTTCG---CC-AA-AG---T-CAC------C-CATTTTCT
gi|4770                       :                                                                                                                   -------T-------CGT----AAA-TAGGCTA-A-TT--GTTCG---CC-AA-AC---T-TGC------C-CATCTTCTTT