lowQualScore : 2 4 2 88 2 2 88 2 2 2 2 33
lowQualScore : . . . .. . . .. . . . . ..
lowQualScore : 0 0 0 22 0 0 88 0 0 0 1 55
consensus : AAAAAATCATG-AAAATCGG-T-CAAA-NCG-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
Reference ( gi|124473 ) : AAAAAATCATG-AAAATCGG-T-CAAA-CCG-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124475 : AAAAAATCATA-AAAATCGGGT-CAAA-CCG-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124476 : AAAAGATCATG-AAAATCGG-T-CAAA-CCG-TTTG-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGGAa
gi|124477 : AAAAAATCATG-AAAATCGG-T-CAAA-CCA-TTTT-TG-GAGTAATT-TGC-ATTTTT-AGTGAGGGAAa
gi|124478 : AAAAAATCATG-AAAATCGG-T-CTAA-CCG-TTTT-TG-GAGTAA-T-TGC-ATTTTT-ATTGAGGGAAa
gi|124474 : AAAAAA-CATG-AAAATCGG-T-CAAA-CCG-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAa
gi|124479 : AAAAAATCATG-AAAATCGG-T-CAAA-CCG-TTTT-T--TGGTAA-T-TGC-A--TTT-AGTGAGGGAA
gi|124480 : AAAAAATCATG-AAAATCGG-T-CAAAACCG-TTT------AGTAA-T-TGC-ATTTTT-AGTGAGGGAAa
gi|124481 : AAAAGATCTAA-AAAATCAA-T-CAAA-GCG-TTTTTT--GAGTAA-T-TGC-ATTTTT-AAAAAGGGa
gi|124485 : AAAAATCATG-AAAATCGG-T-CAAA--CG-TTTT-TTGGAATAA-T-TGCAATTTTT-A-TGAGGAAA
gi|124482 : AAAAATCATA-AAAATCAA-T-CAAA-GCG-TTTT-T--GAGTAA-T-TGC-ATTTTA-AAAGGGGAAAa
gi|124483 : AAAAGTCATA-AAAATCAA-T-CAAA-GCG-TTTT-T--GAGTAA-T-TGT-ATTTTT-AAAAAGGGGAa
gi|124484 : AAAAATCATA-AAAATCAA-T-CAAA-GCG-TTTT-C--GAGTAA-T-TTC-ATTTTT-AAAAAGGGGAa
gi|124489 : AAAAATCTTA-AAAATCGG-T-CAAG-GTA-TTTT-T--CAGTAA-T-TGT-ATTTTT-CATGAGGGAAa
gi|124490 : AAAAATCATG-AAAATCGA-T-CAAG-GCG--TTT-T--GAGTAA-T-TGT-ATTTTa
gi|124486 : AAAAATCATG-AAAATCGGAT-CAAG--CG--TTT-T--GAGTAA-T-TGT-ATTTTTGAAAAAGGGAA
gi|124488 : AAAAAT-ATG-AAA--CAG-TTCGAA-CCT-TTCT-T--GAGTAA-T-TGC-ATTTT---GTGAGGGAAa
gi|124487 : AAAAGTCAT--AAAATCAA-T-CAAA-GCG-TTTT----GAGTAA-T-TGC-AATTTT-AAAAAGGGGAa
gi|124491 : AAAAATCATATAAAAACAA-T-CAAA-GCG-TTTT-TC-GAGTAA-T-TTC-ATTTTT-AAAAGGGGAAa
gi|124493 : AAAGTCATG-AAAATCAG-T-CAAA-CCGTTTTT-T--GAGTAA-TATGC-ATGTTT-AGTGAGGAAAa
gi|124492 : AAAATCATA-AAAATCAA-T-CAAA-GCG-TTTT-T--GAGGAA-T-TGC-ATTTTT-AAAAAGGGGAa
Alignments
lowQualScore : 1 3 1 2 1 1 1 88 1 1 1 2 22
lowQualScore : . . . . . . . .. . . . . ..
lowQualScore : 9 8 9 9 9 9 9 33 9 9 9 0 33
consensus : AAAAAATCATG-AAAATCGG-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
Reference ( family-822 ) : AAAAAATCATG-AAAATCGG-T-CAAANC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124473 : AAAAAATCATG-AAAATCGG-T-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124474 : AAAAAA-CATG-AAAATCGG-T-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGA
gi|124475 : AAAAAATCATA-AAAATCGGGT-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124476 : AAAAGATCATG-AAAATCGG-T-CAAACC-G-TTTG-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGGAa
gi|124477 : AAAAAATCATG-AAAATCGG-T-CAAACC-A-TTTT-TG-GAGTAATT-TGC-ATTTTT-AGTGAGGGAAa
gi|124478 : AAAAAATCATG-AAAATCGG-T-CTAACC-G-TTTT-TG-GAGTAA-T-TGC-ATTTTT-ATTGAGGGAAa
gi|124479 : AAAAAATCATG-AAAATCGG-T-CAAACC-G-TTTT-T--TGGTAA-T-TGC-A--TTT-AGTGAGGGAAa
gi|124480 : AAAAAATCATG-AAAATCGG-T-CAAAACCG-TTT------AGTAA-T-TGC-ATTTTT-AGTGAGGGAAa
gi|124481 : AAAAGATCTAA-AAAATCAA-T-CAAAGC-G-TTTTTT--GAGTAA-T-TGC-ATTTTT-AAAAAGGGa
gi|124482 : AAAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTA-AAAGGGGAAA
gi|124483 : AAAAGTCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGT-ATTTTT-AAAAAGGGGAa
gi|124484 : AAAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-C--GAGTAA-T-TTC-ATTTTT-AAAAAGGGGAa
gi|124485 : AAAAATCATG-AAAATCGG-T-CAAA-C-G-TTTT-TTGGAATAA-T-TGCAATTTTT-A-TGAGGAAAa
gi|124486 : AAAAATCATG-AAAATCGGAT-C-AAGC-G--TTT-T--GAGTAA-T-TGT-ATTTTTGAAAAAGGGAAa
gi|124487 : AAAAGTCAT--AAAATCAA-T-CAAAGC-G-TTTT----GAGTAA-T-TGC-AATTTT-AAAAAGGGGAa
gi|124488 : AAAAAT-ATG-AAA--CAG-TTCGAACC-T-TTCT-T--GAGTAA-T-TGC-ATTTT---GTGAGGGAAa
gi|124489 : AAAAATCTTA-AAAATCGG-T-CAAGGT-A-TTTT-T--CAGTAA-T-TGT-ATTTTT-CATGAGGGAAa
gi|124490 : AAAAATCATG-AAAATCGA-T-CAAGGC-G--TTT-T--GAGTAA-T-TGT-ATTTTa
gi|124491 : AAAAATCATATAAAAACAA-T-CAAAGC-G-TTTT-TC-GAGTAA-T-TTC-ATTTTT-AAAAGGGGAA
gi|124492 : AAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGGAA-T-TGC-ATTTTT-AAAAAGGGGAa
gi|124493 : AAAGTCATG-AAAATCAG-T-CAAACC-GTTTTT-T--GAGTAA-TATGC-ATGTTT-AGTGAGGAAAa
Alignments
lowQualScore : 1 3 1 3 1 1 1 88 1 1 1 2 22
lowQualScore : . . . . . . . .. . . . . ..
lowQualScore : 9 8 9 9 9 9 9 33 9 9 9 0 33
consensus : AAAAAATCATG-AAAATCGG-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
Reference ( family-822 ) : AAAAAATCATG-AAAATCGG-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124473 : AAAAAATCATG-AAAATCGG-T-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124474 : AAAAAA-CATG-AAAATCGG-T-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGA
gi|124475 : AAAAAATCATA-AAAATCGGGT-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124476 : AAAAGATCATG-AAAATCGG-T-CAAACC-G-TTTG-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGGAa
gi|124477 : AAAAAATCATG-AAAATCGG-T-CAAACC-A-TTTT-TG-GAGTAATT-TGC-ATTTTT-AGTGAGGGAAa
gi|124478 : AAAAAATCATG-AAAATCGG-T-CTAACC-G-TTTT-TG-GAGTAA-T-TGC-ATTTTT-ATTGAGGGAAa
gi|124479 : AAAAAATCATG-AAAATCGG-T-CAAACC-G-TTTT-T--TGGTAA-T-TGC-A--TTT-AGTGAGGGAAa
gi|124480 : AAAAAATCATG-AAAATCGG-T-CAAAACCG-TTT------AGTAA-T-TGC-ATTTTT-AGTGAGGGAAa
gi|124481 : AAAAGATCTAA-AAAATCAA-T-CAAAGC-G-TTTTTT--GAGTAA-T-TGC-ATTTTT-AAAAAGGGa
gi|124482 : AAAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTA-AAAGGGGAAA
gi|124483 : AAAAGTCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGT-ATTTTT-AAAAAGGGGAa
gi|124484 : AAAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-C--GAGTAA-T-TTC-ATTTTT-AAAAAGGGGAa
gi|124485 : AAAAATCATG-AAAATCGG-T-CAAA-C-G-TTTT-TTGGAATAA-T-TGCAATTTTT-A-TGAGGAAAa
gi|124486 : AAAAATCATG-AAAATCGGAT-C-AAGC-G--TTT-T--GAGTAA-T-TGT-ATTTTTGAAAAAGGGAAa
gi|124487 : AAAAGTCAT--AAAATCAA-T-CAAAGC-G-TTTT----GAGTAA-T-TGC-AATTTT-AAAAAGGGGAa
gi|124488 : AAAAAT-ATG-AAA--CAG-TTCGAACC-T-TTCT-T--GAGTAA-T-TGC-ATTTT---GTGAGGGAAa
gi|124489 : AAAAATCTTA-AAAATCGG-T-CAAGGT-A-TTTT-T--CAGTAA-T-TGT-ATTTTT-CATGAGGGAAa
gi|124490 : AAAAATCATG-AAAATCGA-T-CAAGGC-G--TTT-T--GAGTAA-T-TGT-ATTTTa
gi|124491 : AAAAATCATATAAAAACAA-T-CAAAGC-G-TTTT-TC-GAGTAA-T-TTC-ATTTTT-AAAAGGGGAA
gi|124492 : AAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGGAA-T-TGC-ATTTTT-AAAAAGGGGAa
gi|124493 : AAAGTCATG-AAAATCAG-T-CAAACC-GTTTTT-T--GAGTAA-TATGC-ATGTTT-AGTGAGGAAAa
blockSeqs : T G T C C T T TG T A A G GT
blockSeqs : . A . C . . . G . . . . GT
blockSeqs : . . . C . . . G . . . . GT
blockSeqs : . . . C . . . C . . . . GT
blockSeqs : . . . C . . . . . . . . TT
blockSeqs : . . . C . . . . . . . . GT
blockSeqs : . . . A . . . . . . . . GT
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . C . . . . . . . . GT
blockSeqs : . . . G . . . . . . . . AT
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . G . . . . . . . . AA
blockSeqs : . . . G . . . . . . . . GT
blockSeqs : . . . C . . . . . . . . T
blockSeqs : . . . . . . . . . . .
blockSeqCons :
originalCons : AAAAAATCATG-AAAATCGG-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
finalCons : AAAAAATCATG-AAAATCGG-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
Alignments
lowQualScore : 1 3 1 3 1 1 1 88 1 1 1 2 22
lowQualScore : . . . . . . . .. . . . . ..
lowQualScore : 9 8 9 9 9 9 9 33 9 9 9 0 33
consensus : AAAAAATCATG-AAAATCGG-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
Reference ( family-822 ) : AAAAAATCATG-AAAATCGG-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124473 : AAAAAATCATG-AAAATCGG-T-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124474 : AAAAAA-CATG-AAAATCGG-T-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGA
gi|124475 : AAAAAATCATA-AAAATCGGGT-CAAACC-G-TTTT-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGAA
gi|124476 : AAAAGATCATG-AAAATCGG-T-CAAACC-G-TTTG-T--GAGTAA-T-TGC-ATTTTT-AGTGAGGGGAa
gi|124477 : AAAAAATCATG-AAAATCGG-T-CAAACC-A-TTTT-TG-GAGTAATT-TGC-ATTTTT-AGTGAGGGAAa
gi|124478 : AAAAAATCATG-AAAATCGG-T-CTAACC-G-TTTT-TG-GAGTAA-T-TGC-ATTTTT-ATTGAGGGAAa
gi|124479 : AAAAAATCATG-AAAATCGG-T-CAAACC-G-TTTT-T--TGGTAA-T-TGC-A--TTT-AGTGAGGGAAa
gi|124480 : AAAAAATCATG-AAAATCGG-T-CAAAACCG-TTT------AGTAA-T-TGC-ATTTTT-AGTGAGGGAAa
gi|124481 : AAAAGATCTAA-AAAATCAA-T-CAAAGC-G-TTTTTT--GAGTAA-T-TGC-ATTTTT-AAAAAGGGa
gi|124482 : AAAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGC-ATTTTA-AAAGGGGAAA
gi|124483 : AAAAGTCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGTAA-T-TGT-ATTTTT-AAAAAGGGGAa
gi|124484 : AAAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-C--GAGTAA-T-TTC-ATTTTT-AAAAAGGGGAa
gi|124485 : AAAAATCATG-AAAATCGG-T-CAAA-C-G-TTTT-TTGGAATAA-T-TGCAATTTTT-A-TGAGGAAAa
gi|124486 : AAAAATCATG-AAAATCGGAT-C-AAGC-G--TTT-T--GAGTAA-T-TGT-ATTTTTGAAAAAGGGAAa
gi|124487 : AAAAGTCAT--AAAATCAA-T-CAAAGC-G-TTTT----GAGTAA-T-TGC-AATTTT-AAAAAGGGGAa
gi|124488 : AAAAAT-ATG-AAA--CAG-TTCGAACC-T-TTCT-T--GAGTAA-T-TGC-ATTTT---GTGAGGGAAa
gi|124489 : AAAAATCTTA-AAAATCGG-T-CAAGGT-A-TTTT-T--CAGTAA-T-TGT-ATTTTT-CATGAGGGAAa
gi|124490 : AAAAATCATG-AAAATCGA-T-CAAGGC-G--TTT-T--GAGTAA-T-TGT-ATTTTa
gi|124491 : AAAAATCATATAAAAACAA-T-CAAAGC-G-TTTT-TC-GAGTAA-T-TTC-ATTTTT-AAAAGGGGAA
gi|124492 : AAAATCATA-AAAATCAA-T-CAAAGC-G-TTTT-T--GAGGAA-T-TGC-ATTTTT-AAAAAGGGGAa
gi|124493 : AAAGTCATG-AAAATCAG-T-CAAACC-GTTTTT-T--GAGTAA-TATGC-ATGTTT-AGTGAGGAAAa