lowQualScore : 111 222 1 1111111 1 11 1111 11 2222222222222 1 1111111 1
lowQualScore : 2 66 33 000 000 2 2 888 55 2 6 1111111 1 22 22 6666 2 5555 2 3333 6 55 1 888888 5 55 2 0000000000000 2 666 33 2 2 0 9999999 2 1 6 2 666666 4 2 2 66 2 2 2 2 2 8 2 2 2 2 2 2 2 444 2 2 2 2 2 2 2
lowQualScore : . .. .. ... ... . . ... .. . . ....... . .. .. .... . .... . .... . .. . ...... . .. . ............. . ... .. . . . ....... . . . . ...... . . . .. . . . . . . . . . . . . . ... . . . . . . .
lowQualScore : 7 33 77 666 111 2 2 999 33 2 4 8888888 6 55 99 6666 1 2222 2 3333 5 77 5 444444 7 00 2 3333333333333 4 555 22 1 4 2 4444444 4 2 5 4 888888 7 4 4 55 4 5 5 5 5 2 5 5 5 5 5 5 5 444 5 5 5 7 7 6 7
consensus : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATG-ACTN-GCG--TCA-AAAAGCTTGTTAGCG----CTACTCCNAC--TG----AAC-C--G-AAAGTCATAGA-GACAC-GAAACCTT-CGGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG---A--GATTAA-CCGAAGGGA---TCC-G-AGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
Reference ( gi|123093 ) : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCT--GAA-TTACAATG-ACTA-ACG--TCA-AAAAGCTAGTTATCG----CTAATCCAGC--TG----AAC-C--G-AAAGTCATAGA-GACAC-AGAATCTT-AAGTGATTC-A--TTAACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG---A--GTTTAA-CCGAAGGGA---CTC-A-AGGACGC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATGTC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
gi|123096 : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTCC---GAA-TTGCAATG-ACTA-ACG--TCA-AAA-GCTTGTTATCG----CTAATCCAAC--TG----AAT-C--G-AAAGTCATAGA-GACAC-AAAACCAT-AAGTGATTC-A--TTAACTA-T-AAA-------A-AAAATCCTTGCAGTG-AG---A--GTTTAAACCGAAGGGA---CTC-A-AGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATCAT-TTAGG-C-CT-AC-A-GTTT---TT-ACAT-T-AACAAAGA---AGAGA-CATGGGA
gi|123094 : GCATGATTAA-TGGAAATTCTGAAC--TTTGA--CCC-ATTTC---GAA-TTACAATG-ACTA-ACG--TCA-AAAAGCTTGTTACGG----CTACTCCAAC--TG----AAC-C--G-AAAGTCATAGA-GACGCAAAAACCTT-CAGTGATTT-A--TTAACTA-T-AGA-------A-A---TCCTTGCAGTG-AGA--A--GTTTAA-CCGAAGGA-----TCAA-AGGACCC-T------TA-CA-C-ATAGTT--A-CT-G-CCCTG-AAAGTCTTCC-AATATC-ATGAT-TTATG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGATT-AAAGA-CATGGGAC
gi|123095 : GCATCATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTACAATG-ACTA-ACG--TCA-ATAAGCTTGT-ACGG----CTACTC-AAC--TG----AAC-C--G-AA-GTCATAGA-GAAGC-AAAACCTT-CAATGATTC-A--TTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AG---A--GTTTA--CCGAAGGGA---TCT-A-AGGACCC-T------TAACAAC-ATAGTT--A-CT-GCCCCTG-AAAGTC-TTC-AATATC-ATGAT-TTAGG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123097 : GCATGATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTAC-ATGAACT--ACG--TCA-AAAAGCTTATTATGA----CTACTCCAAC--TGA---AAC-C--GAAAAGTC-TAGA-GAAGC-AAAACCTT-CAATGATTCAA--TTAACTA-T-AAA-------A-A----TCTTGCAGTG-AG---T--GTTTAA-CCGAAAGGA---TAT-A-AGGACCA-T------TA-CA-C-ATAGTTTAA-CT-GCCCCTG-AAAGTC-TCCAAATATC-ATTA--TTAGG-CGCT-AC-AGGCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123098 : GCATAATTAA-TTACAATTTTGAAC--TTTGA--CCT-TTATTA--GAA-ATACAAGG-ATTC-GCA--TCA-AAAATCTTGTTAGCA----CTACTTC--C--TACAAAAAC-C--A-AAAGTCAAAAA-GACAT-A--ACCTC-GA-TGATTT-A--GTCACTAAT-AAA-------A-CA--CCCTTGCAGTG-AC---A--AATTAA-CGGAAGGGT---CT--G-ATGACCC-T------TA-AC-C-ATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATAT-T-AATAAA-A-T-AGAAA-TATGG
gi|123099 : GTATGATTAA-TTACAATTTCGATC--TTTGA--CCT-TTATTA--GAA-ATACAATG-ATT---CGGATAA-AAAATCTTGTTAGCA----CTACTCCTAC--TT----AAC-T--A-AAAGT-ATAAAAGACAT-GAAACCTT-TGATGATTT-A--GTCACCG-T-AAA-------ACAC--CCCT-GCAGTG-AC---A--AATTAA-CGGAAGGAA---TCT-G-ATGACCC-T------TA--A-CTATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATATAT-ATC-AAGA-T-AGAAA-TATGGGA
gi|123101 : GTATAATTAA-TTGCAATTTTGAAC--TTTGA--CTTTATTA----GAA-ATACAACG-ATTT-GCA--TCA-AAAATATTGTTAGCA----CTACTCCTAC--TA----AAT-C--A-AAAGTGAAAAA-GACAT-GCAGCCTT-CGATAATTT-A--TTCCCTG-T-AAA-------A-CA--CCCTTGCAGTG-TC---A--AATTAA-CAAAAGGGA---TCT-G-ATGACCC-T------TA-AC-C-ATAGTT--A-
gi|123100 : GTACAATTAA-TCGAAACTCTGGAC--CTT----CTT-A-------GAA-G-ACATTG-ACTA-GCG--TCA-AAAAGTTTGTTGGCG----CTACTCTGAC--TG----AAG-C--A-AAATTCATAGA-GA----------TT-AATTGATT--A--TT
gi|123102 : GTATAATTAA-TTACAATATTCAAC--TTTGA--CCT-TTATTA--GAA-ATACAACG-ATTG-GCA--TCA-AAAATTTTGCTAGCA----CTACTTCTAC--TA----AAC-C--A-AAAGTCAAAAA-GACAT-GAAACCTT-TGATGGTTT-T--GTCACTG-T-AAA-------ACAC--Ctgttgtttttcgtcccgccgagaatacacgaaaccattggtgattgactcactttgaaacactcttgcaatgacagattaaccaaaggggtcgataatccttacactagtcatttcccatgaaagtttccaatatcattatctaagcatatagcttttatattcaac
gi|123103 : GCATAATTAA-TTGGAATTC---------------CT--TCTCA--GAA-TTACAATT-GCTC-GCA--TCA-AAAAGCATGTGATCA----CTACTCC
gi|123104 : ATAATTAA-TTAAATTTCTGAAC--TTTGA--CC---TTTCTACGAA-TTACAATG-ACTC-GCG--TCC-AAAAACTTGTTGGTG----CTATTCCGAT--TG----AAC-C--A-AAAGTCATAGG-GACAC-GAAACCAT-TGGTGATTG-A--ATCACTT-T-GAA-------A-CA--CCATTGCAGTG-AG---A--GATTTA-CTGAAGGGA----TC-AGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TCAAG-C-CT-AC-A-ACTT---TT-ACAT-T-AACAAAGA-T-ACAGA-CATGGGAC
gi|123105 : AATTAA-TTGAAAATCTGAATCTTTTGA--CCCGATTCCA--GAAATTACA-TG-ACTA-ACGG-TCA-AAAGGCTTGTTAG-G----CTAACCCAAC--TG----AAC-T--G-AAAGTCATAGA-GACGC-AAAACCTTCAAGTGATTC-AGTTTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AGTCGACTGTTTA--TCGAATGGA---TCT-A-AGGACCC-T------AAACA-C-ATAGTT--A-CT-GCCCCTG-AA-GTC-TCC-AATACC-ATT-T-TTAGGCC-CT-AC-A-GGTT---TT-ACTT-T-AACAAAGA-T-A-AGACCATGGGAC
gi|123106 : AACTGA-CTGAAATTCTGAAC--TTT----------TTCC--GAA-TTAAAATG-ACTA-GCG--TCA-AAAAGCTTGTTAGCT----CTACTCCACC--TG----AAC-C--A-AA
gi|123107 : ATTAAATTGAAATTCTGAACG-TTTGAGACCC-ATTTCTCTGAA-TTACA-TG-ACTA-ACG--TCA-AAG-GCTTGTTA-CGTGGGCTA-CCCAACCTTG----AACGC--G-AAAGTCATAGA-GACGC-AAAACCTTCCAGTG-TTC-A--TTAACTA-T-AAA-------A-TC--CCCTTGCAGTGAAG---A--G-TTAA-CGGAAGGGAAATCT--A-AGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-T-C-AATATCAATCAT-TAAGG-C-CTAACAA-GCTT---TTAACAT-T-AACACAGA-T-AAAGA-CATGGGAC
gi|123108 : TTAA-TTACAATTTTGATC--TT-GA--CCT-TTATTA--GAA-ATACAATG-ATTGGATA--AAA-AAAATCTTGTTAGCA----CTACTCCTAC--TA----AAA-CTAA-AAAGTCTAAAA-GACAT-GAAACCTT-TGATGATTT-A--GTCACTG-T-AAA-------A-AC--ACCCCGCAGTG-AC---A--A-ATAA-CGGAAGGAT---CT--G-ATGACCC-T------TA-AC-C-ATAGTT--ATCC-CCCCCTGAAAAGTC-TAC-A---TC-GTTAT-TTCAG-C-CA-TT-A-GCTTTGATT-AT-T-T-AACAAAGA-T-A-ATA-CATGG
gi|123109 : TTTCC--GAA-TTACAATG-ATCG-GC----CA-AAA---TTGTT-TC-----CTAATCCAAC--TG----AAC-C----AAAGTC-TCGA-GACAC-AAAACCTT-TAGTGATTC-T--TTAAATT-T-AAACACCTTAA-ACA-CCCTTGCA-TG-AG---A--GAATAA-CCGAAGG-A---TCC-A-ATGAC---C------TA-CA-C-AT-GTTTAA-CTAGCCCTTG-AAAGTC-TCC-AAT-----TTATCTTAAG-C-CT-AC-G-GCTT---TT-ACAT-T-AACAAAGA-T-AGATA-CATGGGAC
gi|123110 : TTCA--GAA-TAATAATG-ACTG-GCA--TTT-AAAAGCTTGTTATTG----CTACTCCTAC--GA----AAG-C--G-GAAGTCATAAA-GACA---AAACCTT-CGATGACCC------------T-AG----------------CTTGCAGTG-AG---A--GATTAG-CTGAAGGGA---TCC-A-TGGGCCC-T------TA-CA-C-ATAGTT--A-TT-GCCCCTT-AAAGTT-TCT-AATGTC-ATTAT-GTAAG-C-CT-AT-A-ACTT---TT-ACA--T-AATAAAAA-T-GGAGA-CATGGGAC
gi|123111 : TTCA--GAA-TAATAACG-ACTG-GCA--TTTTAAAAGCTTGTTATTG----CTACTCCTAC--GA----AAG-C--G-GAA-TCATAAA-GACA---AAACCTT-CGATGACCC------------T-AG----------------CTTGCAGTG-AG---A--GATTAG-CTGAAGG-A---TCC-A-TTGGCCC-T------TA-CA-C-ATAGTT--A-GT-GCCCCTT-AAATTT-CTT-AAGTTC-A-TAT-GTAAC-C-TT-AT-A-AC-T---TT-ACA--T-AATAAAAA-TGAGGAA-CATGGGAC
gi|123112 : AAACTGGTTAGCA----CAAATCCTAC--TA----AAC-C--G-AAAGTTATAGA-TACAA-AAAACTTT-CAATGATTA-A--TTCACAA-T-AAA-------G-AC--CTTTTGCAGTG-AA---A--AATTAA-CCAAAGGGA---TAA-G-AGAACTA-T------TA-AA-C-GTAGTT--A--T-GCCTATG-AAAGTC-TCA-AATATC-ATTAT-TAAAA-C-AT-AT-A-CCTT---TT-ACAT-A-AGCAATGA-T-AGAGG-CATAGGAC
gi|123113 : ----CTACTCCGAA--TG----AAC-C--A-AAAGTCATACA-GACAC-GAAACCAT-TGGTGATTG-A--CTCACTT-TCAAA-------C-AC--ACC-TGCAATG-AC---A--GATTCA-CCAAAGTGA---TCC-G-AAGATCCATACAAAATA-CA-A-ATAGTT--A-TT-GCACCTG-AAAGTA-TCC-AATATC-ATTTT-TTAAG-C-CG-AT-A-ACTT---TG-ACAA-A-AATCAAGA-C-AGATA-CATGAGAC
gi|123100 : ACAC-GAAACCAT-TGGTGATTG-A--CTCACTT-T-GAA-------A-CA--CTCTTGCAATG-AC---A--GATTAA-CCAAAGGGG----TC-G-ATAATCC-T------TA-CA-C--TAGTC--A-TT-TCCCATG-AAAGTT-TCC-AATATC-ATTAT-CTAAG-C-AT-AT-A-GCTT---TT-ATAT-TCAAC
Alignments
lowQualScore : 11 1111111111111
lowQualScore : 2 55 33 11 888 2 1 2 2 22 55555 1 1 22 2 2 2 4444 2 555 222 555555 3 44 2 7777777777777 2 4 4444 2 33 1 0 2 888888 2 2 2 66 2 2 2 2 0 2 2 2 2 2 2 2 2 444 2 2 2 2 2 1 2
lowQualScore : . .. .. .. ... . . . . .. ..... . . .. . . . .... . ... ... ...... . .. . ............. . . .... . .. . . . ...... . . . .. . . . . . . . . . . . . . ... . . . . . . .
lowQualScore : 5 99 44 88 111 1 0 1 1 88 44444 9 0 88 0 0 0 4444 1 777 777 777777 2 33 1 7777777777777 2 4 8888 2 11 3 6 2 666666 2 2 2 11 2 4 4 4 7 4 4 4 4 4 4 4 4 111 4 4 4 5 5 8 5
consensus : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
Reference ( family-817 ) : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
gi|123093 : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCT--GAA-TTACAATGACTAACG-TCA-AAAAG--CTAGTTA---TCGCTAAT-CCAGC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-AGAATCTT-A-AGTGATTC-A--TTAACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGT---TTAA-CCGAAGGG--ACTCAAGGACGC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATGTC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
gi|123094 : GCATGATTAA-TGGAAATTCTGAAC--TTTGA--CCC-ATTTC---GAA-TTACAATGACTAACG-TCA-AAAAG--CTTGTTA---CGGCTACT-CCAAC--TG-AA-C-C--G-AAAGTCATAGA-GACGCAAAAACCTT-C-AGTGATTT-A--TTAACTA-T-AGA-------A-A---TCCTTGCAGTG-AGAAGT---TTAA-CCGAA-GG--ATCAAAGGACCC-T------TA-CA-C-ATAGTT--A-CT-G-CCCTG-AAAGTCTTCC-AATATC-ATGAT-TTATG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGATT-AAAGA-CATGGGAC
gi|123095 : GCATCATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTACAATGACTAACG-TCA-ATAAG--CTTGT-A---CGGCTACT-C-AAC--TG-AA-C-C--G-AA-GTCATAGA-GAAGC-AAAACCTT-C-AATGATTC-A--TTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AG-AGT---TTA--CCGAAGGG--ATCTAAGGACCC-T------TAACAAC-ATAGTT--A-CT-GCCCCTG-AAAGTC-TTC-AATATC-ATGAT-TTAGG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123096 : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTCC---GAA-TTGCAATGACTAACG-TCA-AAA-G--CTTGTTA---TCGCTAAT-CCAAC--TG-AA-T-C--G-AAAGTCATAGA-GACAC-AAAACCAT-A-AGTGATTC-A--TTAACTA-T-AAA-------A-AAAATCCTTGCAGTG-AG-AGT---TTAAACCGAAGGG--ACTCAAGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATCAT-TTAGG-C-CT-AC-A-GTTT---TT-ACAT-T-AACAAAGA---AGAGA-CATGGGA
gi|123097 : GCATGATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTAC-ATGAACTACG-TCA-AAAAG--CTTATTA---TGACTACT-CCAAC--TGAAA-C-C--GAAAAGTC-TAGA-GAAGC-AAAACCTT-C-AATGATTCAA--TTAACTA-T-AAA-------A-A----TCTTGCAGTG-AG-TGT---TTAA-CCGAAAGG--ATATAAGGACCA-T------TA-CA-C-ATAGTTTAA-CT-GCCCCTG-AAAGTC-TCCAAATATC-ATTA--TTAGG-CGCT-AC-AGGCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123098 : GCATAATTAA-TTACAATTTTGAAC--TTTGA--CCT-TTATTA--GAA-ATACAAGGATTCGCA-TCA-AAAAT--CTTGTTA---GCACTACTTCCTAC--AA-AAAC-C--A-AAAGTCAAAAA-GACAT---AACCT--C-GATGATTT-A--GTCACTAAT-AAA-------A-CA--CCCTTGCAGTG-AC-AAA---TTAA-CGGAAGGG---TCTGATGACCC-T------TA-AC-C-ATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATAT-T-AATAAA-A-T-AGAAA-TATGG
gi|123099 : GTATGATTAA-TTACAATTTCGATC--TTTGA--CCT-TTATTA--GAA-ATACAATGATTCGGA-TAA-AAAAT--CTTGTTA---GCACTACT-CCTAC--TT-AA-C-T--A-AAAGT-ATAAAAGACAT-GAAACCTT-T-GATGATTT-A--GTCACCG-T-AAA-------ACAC--CCCT-GCAGTG-AC-AAA---TTAA-CGGAAGGA--ATCTGATGACCC-T------TA--A-CTATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATATAT-ATC-AAGA-T-AGAAA-TATGGGA
gi|123100 : GTACAATTAA-TCGAAACTCTG--------GA--CCT--TCTTA--GAA-G-ACATTGACTAGCG-TCA-AAAAG--TTTGTTG---GCGCTACT-CTGAC--TG-AA-G-C--A-AAATTCATAGA-GA
gi|123100 : ACAC-GAAACCAT-T-GGTGATTG-A--CTCACTT-T-GAA-------A-CA--CTCTTGCAATG-AC-AGA---TTAA-CCAAAGGG--GT-CGATAATCC-T------TA-CA-C--TAGTC--A-TT-TCCCATG-AAAGTT-TCC-AATATC-ATTAT-CTAAG-C-AT-AT-A-GCTT---TT-ATAT-TCAACttaattgattatttgttgtttttcgtcccgccgagaatacacgaaaccattggtgattgactcactttgaaacactcttgcaatgacagattaaccaaaggggtcgataatccttacactagtcatttcccatgaaagtttccaatatcattatctaagcatatagcttttatattcaac
gi|123101 : gtacaattaatcgaaactctggaccttcttagaagacattgactagcgtcaaaaagtttgttggcgctactctgactgaagcaaaattcatagagattaattgattatttgttgtttttcgtcccgccgagaatGTATAATTAA-TTGCAATTTTGAAC--TTTGA--CTTTATT--A--GAA-ATACAACGATTTGCA-TCA-AAAAT--ATTGTTA---GCACTACT-CCTAC--TA-AA-T-C--A-AAAGTGAAAAA-GACAT-GCAGCCTT-C-GATAATTT-A--TTCCCTG-T-AAA-------A-CA--CCCTTGCAGTG-TC-AAA---TTAA-CAAAAGGG--ATCTGATGACCC-T------TA-AC-C-ATAGTT--A-
gi|123102 : GTATAATTAA-TTACAATATTCAAC--TTTGA--CCT-TTATTA--GAA-ATACAACGATTGGCA-TCA-AAAAT--TTTGCTA---GCACTACT-TCTAC--TA-AA-C-C--A-AAAGTCAAAAA-GACAT-GAAACCTT-T-GATGGTTT-T--GTCACTG-T-AAA-------ACAC--C
gi|123103 : GCATAATTAA-TTGGAATTC---------------CT--TCTCA--GAA-TTACAATTGCTCGCA-TCA-AAAAG--CATGTGA---TCACTACT-CC
gi|123104 : ATAATTAA-TTAAATTTCTGAAC--TTTGA--CCT-TTCTAC--GAA-TTACAATGACTCGCG-TCC-AAAAA--CTTGTTG---GTGCTATT-CCGAT--TG-AA-C-C--A-AAAGTCATAGG-GACAC-GAAACCAT-T-GGTGATTG-A--ATCACTT-T-GAA-------A-CA--CCATTGCAGTG-AG-AGA---TTTA-CTGAAGGG--ATCAGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TCAAG-C-CT-AC-A-ACTT---TT-ACAT-T-AACAAAGA-T-ACAGA-CATGGGAC
gi|123105 : AATTAA-TTGAAAATCTGAATCTTTTGA--CCCGATTCCA--GAAATTACA-TGACTAACGGTCA-AAAGG--CTTGTTA---G-GCTAAC-CCAAC--TG-AA-C-T--G-AAAGTCATAGA-GACGC-AAAACCTT-CAAGTGATTC-AGTTTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AGTCGACTGTTTA-TCGAATGG--ATCTAAGGACCC-TA-----AA-CA-C-ATAGTT--A-CT-GCCCCTG--AAGTC-TCC-AATACC-ATT-T-TTAGGCC-CT-AC-A-GGTT---TT-ACTT-T-AACAAAGA-T-A-AGACCATGGGAC
gi|123106 : AACTGA-CTGAAATTCTGAAC--TTT----------TTCC--GAA-TTAAAATGACTAGCG-TCA-AAAAG--CTTGTTA---GCTCTACT-CCACC--TG-AA-C-C--A-AA
gi|123107 : ATTAAATTGAAATTCTGAACG-TTTGAGACCC-ATTTCTCTGAA-TTACA-TGACTAACG-TCA-AAG-G--CTTGTTACGTGGGCTAC--CCAACCTTG-AA-CGC--G-AAAGTCATAGA-GACGC-AAAACCTTCC-AGTG-TTC-A--TTAACTA-T-AAA-------A-TC--CCCTTGCAGTGAAG-AG----TTAA-CGGAAGGGAAATCTAAGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-T-C-AATATCAATCAT-TAAGG-C-CTAACAA-GCTT---TTAACAT-T-AACACAGA-T-AAAGA-CATGGGAC
gi|123108 : TTAA-TTACAATTTTGATC--TT-GA--CCT-TTATTA--GAA-ATACAATGATTGG-A-TAA-AAAAAATCTTGTTA---GCACTACT-CCTAC--TA-AA-A-CTAA-AAAGTCTAAAA-GACAT-GAAACCTT-T-GATGATTT-A--GTCACTG-T-AAA-------A-AC--ACCCCGCAGTG-AC-AAA----TAA-CGGAA-GG--ATCTGATGACCC-T------TA-AC-C-ATAGTT--ATCC-CCCCCTGAAAAGTC-T----ACATC-GTTAT-TTCAG-C-CA-TT-A-GCTTTGATT-AT-T-T-AACAAAGA-T-A-ATA-CATGG
gi|123109 : TTTCC--GAA-TTACAATGATCGGC---CA-AAA-----TTGTT-----TCCTAAT-CCAAC--TG-AA-C-C----AAAGTC-TCGA-GACAC-AAAACCTT-T-AGTGATTC-T--TTAAATT-T-AAACACCTTAA-ACA-CCCTTGCA-TG-AG-AGA---ATAA-CCGAAGG---ATCCAATGACC---------TA-CA-C-AT-GTTTAA-CTAGCCCTTG-AAAGTC-TCC-AAT-----TTATCTTAAG-C-CT-AC-G-GCTT---TT-ACAT-T-AACAAAGA-T-AGATA-CATGGGAC
gi|123110 : TTCA--GAA-TAATAATGACTGGCA-TTT-AAAAG--CTTGTTA---TTGCTACT-CCTAC--GA-AA-G-C--G-GAAGTCATAAA-GACA---AAACCTT-C-GATGACCC------------T-AG----------------CTTGCAGTG-AG-AGA---TTAG-CTGAAGGG--ATCCATGGGCCC-T------TA-CA-C-ATAGTT--A-TT-GCCCCTT-AAAGTT-TCT-AATGTC-ATTAT-GTAAG-C-CT-AT-A-ACTT---TT-ACA--T-AATAAAAA-T-GGAGA-CATGGGAC
gi|123111 : TTCA--GAA-TAATAACGACTGGCA-TTTTAAAAG--CTTGTTA---TTGCTACT-CCTAC--GA-AA-G-C--G-GAA-TCATAAA-GACA---AAACCTT-C-GATGACCC------------T-AG----------------CTTGCAGTG-AG-AGA---TTAG-CTGAAGG---ATCCATTGGCCC-T------TA-CA-C-ATAGTT--A-GT-GCCCCTT-AAATTT-CTT-AAGTTC-A-TAT-GTAAC-C-TT-AT-A-AC-T---TT-ACA--T-AATAAAAA-TGAGGAA-CATGGGAC
gi|123112 : AAA--CTGGTTA---GCACAAAT-CCTAC--TA-AA-C-C--G-AAAGTTATAGA-TACAA-AAAACTTT-C-AATGATTA-A--TTCACAA-T-AAA-------G-AC--CTTTTGCAGTG-AA-AAA---TTAA-CCAAAGGG--ATAAGAGAACTA-T------TA-AA-C-GTAGTT--A--T-GCCTATG-AAAGTC-TCA-AATATC-ATTAT-TAAAA-C-AT-AT-A-CCTT---TT-ACAT-A-AGCAATGA-T-AGAGG-CATAGGAC
gi|123113 : CTACT-CCGAA--TG-AA-C-C--A-AAAGTCATACA-GACAC-GAAACCAT-T-GGTGATTG-A--CTCACTT-TCAAA-------C-AC--ACC-TGCAATG-AC-AGA---TTCA-CCAAAGTG--ATCCGAAGATCCATACAAAATA-CA-A-ATAGTT--A-TT-GCACCTG-AAAGTA-TCC-AATATC-ATTTT-TTAAG-C-CG-AT-A-ACTT---TG-ACAA-A-AATCAAGA-C-AGATA-CATGAGAC
Alignments
lowQualScore : 11 1111111111111
lowQualScore : 2 55 33 11 888 2 1 2 2 22 55555 1 1 22 2 2 2 4444 2 555 222 555555 3 44 2 7777777777777 2 4 4444 2 33 1 0 2 888888 2 2 2 66 2 2 2 2 0 2 2 2 2 2 2 2 2 444 2 2 2 2 2 1 2
lowQualScore : . .. .. .. ... . . . . .. ..... . . .. . . . .... . ... ... ...... . .. . ............. . . .... . .. . . . ...... . . . .. . . . . . . . . . . . . . ... . . . . . . .
lowQualScore : 5 99 44 88 111 1 0 1 1 88 44444 9 0 88 0 0 0 4444 1 777 777 777777 2 33 1 7777777777777 2 4 8888 2 11 3 6 2 666666 2 2 2 11 2 4 4 4 7 4 4 4 4 4 4 4 4 111 4 4 4 5 5 8 5
consensus : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
Reference ( family-817 ) : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
gi|123093 : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCT--GAA-TTACAATGACTAACG-TCA-AAAAG--CTAGTTA---TCGCTAAT-CCAGC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-AGAATCTT-A-AGTGATTC-A--TTAACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGT---TTAA-CCGAAGGG--ACTCAAGGACGC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATGTC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
gi|123094 : GCATGATTAA-TGGAAATTCTGAAC--TTTGA--CCC-ATTTC---GAA-TTACAATGACTAACG-TCA-AAAAG--CTTGTTA---CGGCTACT-CCAAC--TG-AA-C-C--G-AAAGTCATAGA-GACGCAAAAACCTT-C-AGTGATTT-A--TTAACTA-T-AGA-------A-A---TCCTTGCAGTG-AGAAGT---TTAA-CCGAA-GG--ATCAAAGGACCC-T------TA-CA-C-ATAGTT--A-CT-G-CCCTG-AAAGTCTTCC-AATATC-ATGAT-TTATG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGATT-AAAGA-CATGGGAC
gi|123095 : GCATCATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTACAATGACTAACG-TCA-ATAAG--CTTGT-A---CGGCTACT-C-AAC--TG-AA-C-C--G-AA-GTCATAGA-GAAGC-AAAACCTT-C-AATGATTC-A--TTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AG-AGT---TTA--CCGAAGGG--ATCTAAGGACCC-T------TAACAAC-ATAGTT--A-CT-GCCCCTG-AAAGTC-TTC-AATATC-ATGAT-TTAGG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123096 : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTCC---GAA-TTGCAATGACTAACG-TCA-AAA-G--CTTGTTA---TCGCTAAT-CCAAC--TG-AA-T-C--G-AAAGTCATAGA-GACAC-AAAACCAT-A-AGTGATTC-A--TTAACTA-T-AAA-------A-AAAATCCTTGCAGTG-AG-AGT---TTAAACCGAAGGG--ACTCAAGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATCAT-TTAGG-C-CT-AC-A-GTTT---TT-ACAT-T-AACAAAGA---AGAGA-CATGGGA
gi|123097 : GCATGATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTAC-ATGAACTACG-TCA-AAAAG--CTTATTA---TGACTACT-CCAAC--TGAAA-C-C--GAAAAGTC-TAGA-GAAGC-AAAACCTT-C-AATGATTCAA--TTAACTA-T-AAA-------A-A----TCTTGCAGTG-AG-TGT---TTAA-CCGAAAGG--ATATAAGGACCA-T------TA-CA-C-ATAGTTTAA-CT-GCCCCTG-AAAGTC-TCCAAATATC-ATTA--TTAGG-CGCT-AC-AGGCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123098 : GCATAATTAA-TTACAATTTTGAAC--TTTGA--CCT-TTATTA--GAA-ATACAAGGATTCGCA-TCA-AAAAT--CTTGTTA---GCACTACTTCCTAC--AA-AAAC-C--A-AAAGTCAAAAA-GACAT---AACCT--C-GATGATTT-A--GTCACTAAT-AAA-------A-CA--CCCTTGCAGTG-AC-AAA---TTAA-CGGAAGGG---TCTGATGACCC-T------TA-AC-C-ATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATAT-T-AATAAA-A-T-AGAAA-TATGG
gi|123099 : GTATGATTAA-TTACAATTTCGATC--TTTGA--CCT-TTATTA--GAA-ATACAATGATTCGGA-TAA-AAAAT--CTTGTTA---GCACTACT-CCTAC--TT-AA-C-T--A-AAAGT-ATAAAAGACAT-GAAACCTT-T-GATGATTT-A--GTCACCG-T-AAA-------ACAC--CCCT-GCAGTG-AC-AAA---TTAA-CGGAAGGA--ATCTGATGACCC-T------TA--A-CTATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATATAT-ATC-AAGA-T-AGAAA-TATGGGA
gi|123100 : GTACAATTAA-TCGAAACTCTG--------GA--CCT--TCTTA--GAA-G-ACATTGACTAGCG-TCA-AAAAG--TTTGTTG---GCGCTACT-CTGAC--TG-AA-G-C--A-AAATTCATAGA-GA
gi|123100 : ACAC-GAAACCAT-T-GGTGATTG-A--CTCACTT-T-GAA-------A-CA--CTCTTGCAATG-AC-AGA---TTAA-CCAAAGGG--GT-CGATAATCC-T------TA-CA-C--TAGTC--A-TT-TCCCATG-AAAGTT-TCC-AATATC-ATTAT-CTAAG-C-AT-AT-A-GCTT---TT-ATAT-TCAACttaattgattatttgttgtttttcgtcccgccgagaatacacgaaaccattggtgattgactcactttgaaacactcttgcaatgacagattaaccaaaggggtcgataatccttacactagtcatttcccatgaaagtttccaatatcattatctaagcatatagcttttatattcaac
gi|123101 : gtacaattaatcgaaactctggaccttcttagaagacattgactagcgtcaaaaagtttgttggcgctactctgactgaagcaaaattcatagagattaattgattatttgttgtttttcgtcccgccgagaatGTATAATTAA-TTGCAATTTTGAAC--TTTGA--CTTTATT--A--GAA-ATACAACGATTTGCA-TCA-AAAAT--ATTGTTA---GCACTACT-CCTAC--TA-AA-T-C--A-AAAGTGAAAAA-GACAT-GCAGCCTT-C-GATAATTT-A--TTCCCTG-T-AAA-------A-CA--CCCTTGCAGTG-TC-AAA---TTAA-CAAAAGGG--ATCTGATGACCC-T------TA-AC-C-ATAGTT--A-
gi|123102 : GTATAATTAA-TTACAATATTCAAC--TTTGA--CCT-TTATTA--GAA-ATACAACGATTGGCA-TCA-AAAAT--TTTGCTA---GCACTACT-TCTAC--TA-AA-C-C--A-AAAGTCAAAAA-GACAT-GAAACCTT-T-GATGGTTT-T--GTCACTG-T-AAA-------ACAC--C
gi|123103 : GCATAATTAA-TTGGAATTC---------------CT--TCTCA--GAA-TTACAATTGCTCGCA-TCA-AAAAG--CATGTGA---TCACTACT-CC
gi|123104 : ATAATTAA-TTAAATTTCTGAAC--TTTGA--CCT-TTCTAC--GAA-TTACAATGACTCGCG-TCC-AAAAA--CTTGTTG---GTGCTATT-CCGAT--TG-AA-C-C--A-AAAGTCATAGG-GACAC-GAAACCAT-T-GGTGATTG-A--ATCACTT-T-GAA-------A-CA--CCATTGCAGTG-AG-AGA---TTTA-CTGAAGGG--ATCAGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TCAAG-C-CT-AC-A-ACTT---TT-ACAT-T-AACAAAGA-T-ACAGA-CATGGGAC
gi|123105 : AATTAA-TTGAAAATCTGAATCTTTTGA--CCCGATTCCA--GAAATTACA-TGACTAACGGTCA-AAAGG--CTTGTTA---G-GCTAAC-CCAAC--TG-AA-C-T--G-AAAGTCATAGA-GACGC-AAAACCTT-CAAGTGATTC-AGTTTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AGTCGACTGTTTA-TCGAATGG--ATCTAAGGACCC-TA-----AA-CA-C-ATAGTT--A-CT-GCCCCTG--AAGTC-TCC-AATACC-ATT-T-TTAGGCC-CT-AC-A-GGTT---TT-ACTT-T-AACAAAGA-T-A-AGACCATGGGAC
gi|123106 : AACTGA-CTGAAATTCTGAAC--TTT----------TTCC--GAA-TTAAAATGACTAGCG-TCA-AAAAG--CTTGTTA---GCTCTACT-CCACC--TG-AA-C-C--A-AA
gi|123107 : ATTAAATTGAAATTCTGAACG-TTTGAGACCC-ATTTCTCTGAA-TTACA-TGACTAACG-TCA-AAG-G--CTTGTTACGTGGGCTAC--CCAACCTTG-AA-CGC--G-AAAGTCATAGA-GACGC-AAAACCTTCC-AGTG-TTC-A--TTAACTA-T-AAA-------A-TC--CCCTTGCAGTGAAG-AG----TTAA-CGGAAGGGAAATCTAAGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-T-C-AATATCAATCAT-TAAGG-C-CTAACAA-GCTT---TTAACAT-T-AACACAGA-T-AAAGA-CATGGGAC
gi|123108 : TTAA-TTACAATTTTGATC--TT-GA--CCT-TTATTA--GAA-ATACAATGATTGG-A-TAA-AAAAAATCTTGTTA---GCACTACT-CCTAC--TA-AA-A-CTAA-AAAGTCTAAAA-GACAT-GAAACCTT-T-GATGATTT-A--GTCACTG-T-AAA-------A-AC--ACCCCGCAGTG-AC-AAA----TAA-CGGAA-GG--ATCTGATGACCC-T------TA-AC-C-ATAGTT--ATCC-CCCCCTGAAAAGTC-T----ACATC-GTTAT-TTCAG-C-CA-TT-A-GCTTTGATT-AT-T-T-AACAAAGA-T-A-ATA-CATGG
gi|123109 : TTTCC--GAA-TTACAATGATCGGC---CA-AAA-----TTGTT-----TCCTAAT-CCAAC--TG-AA-C-C----AAAGTC-TCGA-GACAC-AAAACCTT-T-AGTGATTC-T--TTAAATT-T-AAACACCTTAA-ACA-CCCTTGCA-TG-AG-AGA---ATAA-CCGAAGG---ATCCAATGACC---------TA-CA-C-AT-GTTTAA-CTAGCCCTTG-AAAGTC-TCC-AAT-----TTATCTTAAG-C-CT-AC-G-GCTT---TT-ACAT-T-AACAAAGA-T-AGATA-CATGGGAC
gi|123110 : TTCA--GAA-TAATAATGACTGGCA-TTT-AAAAG--CTTGTTA---TTGCTACT-CCTAC--GA-AA-G-C--G-GAAGTCATAAA-GACA---AAACCTT-C-GATGACCC------------T-AG----------------CTTGCAGTG-AG-AGA---TTAG-CTGAAGGG--ATCCATGGGCCC-T------TA-CA-C-ATAGTT--A-TT-GCCCCTT-AAAGTT-TCT-AATGTC-ATTAT-GTAAG-C-CT-AT-A-ACTT---TT-ACA--T-AATAAAAA-T-GGAGA-CATGGGAC
gi|123111 : TTCA--GAA-TAATAACGACTGGCA-TTTTAAAAG--CTTGTTA---TTGCTACT-CCTAC--GA-AA-G-C--G-GAA-TCATAAA-GACA---AAACCTT-C-GATGACCC------------T-AG----------------CTTGCAGTG-AG-AGA---TTAG-CTGAAGG---ATCCATTGGCCC-T------TA-CA-C-ATAGTT--A-GT-GCCCCTT-AAATTT-CTT-AAGTTC-A-TAT-GTAAC-C-TT-AT-A-AC-T---TT-ACA--T-AATAAAAA-TGAGGAA-CATGGGAC
gi|123112 : AAA--CTGGTTA---GCACAAAT-CCTAC--TA-AA-C-C--G-AAAGTTATAGA-TACAA-AAAACTTT-C-AATGATTA-A--TTCACAA-T-AAA-------G-AC--CTTTTGCAGTG-AA-AAA---TTAA-CCAAAGGG--ATAAGAGAACTA-T------TA-AA-C-GTAGTT--A--T-GCCTATG-AAAGTC-TCA-AATATC-ATTAT-TAAAA-C-AT-AT-A-CCTT---TT-ACAT-A-AGCAATGA-T-AGAGG-CATAGGAC
gi|123113 : CTACT-CCGAA--TG-AA-C-C--A-AAAGTCATACA-GACAC-GAAACCAT-T-GGTGATTG-A--CTCACTT-TCAAA-------C-AC--ACC-TGCAATG-AC-AGA---TTCA-CCAAAGTG--ATCCGAAGATCCATACAAAATA-CA-A-ATAGTT--A-TT-GCACCTG-AAAGTA-TCC-AATATC-ATTTT-TTAAG-C-CG-AT-A-ACTT---TG-ACAA-A-AATCAAGA-C-AGATA-CATGAGAC
blockSeqs : A CT GA TA TCT A A G T AT CGTGG T A CT A A G TAA A CAA CA CAGTT A AA C CACCTTAAACA A A ACTG A AA A A ACAAAA A A T TA T A A T A A C C G A A G TGA A A C T G A C
blockSeqs : . G . GA C . A . . . CG . A . . . . GA . CA CC CAAT A A . AAAAA . T T . . T . A . . . TA . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . A C . A . . . CG . A . . . . G . CA C TAT A A . ACAC . . T . . C . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . A A . T . . . TC . A . . . . G . CA C CAT A A . ACAC . . T . . T . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . A A . C . . . TG . T . . . . G . TG A CAT C A . AAT . . T . . T . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . A A . C . . . GC . T . . . . A . CG C TAG C G . ACA . . A . . T . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . T A . A . . . GC . G . . . . A . TG C TAG C T . ACA . . A . . C . . . . . . . . . . . . . . . . . . . . . . . . C .
blockSeqs : . . . T A . T . . . GC . T . . . . A . TG T GAC C G . ACA . . A . . T . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . T A . G . . . GC . T . . . . A . CG T TAT C G . ACA . . A . . A . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . T C . C . . . GC . G . . . . A . CA C TTG C T . AAT . . A . . T . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . A A . C . . . TC . A . . . . A . CA T GAA A A . ATC . . A . . T . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . T C . A . . . GT . A . . . . G . TG T CAT A A . AAC . . A . . T . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . . A . A . . . GC . A . . . . A . CA T TAG C G . GAC . . A . . C . . . . . . . . . . . . . . . . . . . . . . . . G .
blockSeqs : . . . . C . A . . . GC . T . . . . G . AA T CTT A T . CAC . . A . . C . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . G . . . TT . A . . . . G . CG C AAT C A . AA . . A . . C . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . G . . . TT . T . . . . G . T C GAC C T . AA . . A . . A . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . . GC . T . . . . G . . C C . . . . . . . . . C . . . . . . .
blockSeqs : . . G . . . G . T . . . . A . . T C . . . .
blockSeqs : . T . G . . . . .
blockSeqs : .
blockSeqCons :
originalCons : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
finalCons : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
Alignments
lowQualScore : 11 1111111111111
lowQualScore : 2 55 33 11 888 2 1 2 2 22 55555 1 1 22 2 2 2 4444 2 555 222 555555 3 44 2 7777777777777 2 4 4444 2 33 1 0 2 888888 2 2 2 66 2 2 2 2 0 2 2 2 2 2 2 2 2 444 2 2 2 2 2 1 2
lowQualScore : . .. .. .. ... . . . . .. ..... . . .. . . . .... . ... ... ...... . .. . ............. . . .... . .. . . . ...... . . . .. . . . . . . . . . . . . . ... . . . . . . .
lowQualScore : 5 99 44 88 111 1 0 1 1 88 44444 9 0 88 0 0 0 4444 1 777 777 777777 2 33 1 7777777777777 2 4 8888 2 11 3 6 2 666666 2 2 2 11 2 4 4 4 7 4 4 4 4 4 4 4 4 111 4 4 4 5 5 8 5
consensus : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
Reference ( family-817 ) : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCA--GAA-TTACAATGACTNGCG-TCA-AAAAG--CTTGTTA---GCGCTACT-CCNAC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-GAAACCTT-C-GGTGATTC-A--TTCACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGA---TTAA-CCGAAGGG--ATCCGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
gi|123093 : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTTCT--GAA-TTACAATGACTAACG-TCA-AAAAG--CTAGTTA---TCGCTAAT-CCAGC--TG-AA-C-C--G-AAAGTCATAGA-GACAC-AGAATCTT-A-AGTGATTC-A--TTAACTA-T-AAA-------A-AC--CCCTTGCAGTG-AG-AGT---TTAA-CCGAAGGG--ACTCAAGGACGC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATGTC-ATTAT-TTAAG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AGAGA-CATGGGAC
gi|123094 : GCATGATTAA-TGGAAATTCTGAAC--TTTGA--CCC-ATTTC---GAA-TTACAATGACTAACG-TCA-AAAAG--CTTGTTA---CGGCTACT-CCAAC--TG-AA-C-C--G-AAAGTCATAGA-GACGCAAAAACCTT-C-AGTGATTT-A--TTAACTA-T-AGA-------A-A---TCCTTGCAGTG-AGAAGT---TTAA-CCGAA-GG--ATCAAAGGACCC-T------TA-CA-C-ATAGTT--A-CT-G-CCCTG-AAAGTCTTCC-AATATC-ATGAT-TTATG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGATT-AAAGA-CATGGGAC
gi|123095 : GCATCATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTACAATGACTAACG-TCA-ATAAG--CTTGT-A---CGGCTACT-C-AAC--TG-AA-C-C--G-AA-GTCATAGA-GAAGC-AAAACCTT-C-AATGATTC-A--TTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AG-AGT---TTA--CCGAAGGG--ATCTAAGGACCC-T------TAACAAC-ATAGTT--A-CT-GCCCCTG-AAAGTC-TTC-AATATC-ATGAT-TTAGG-C-CT-AC-A-GCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123096 : GCATAATTAA-TTGAAATTCTGAAC--TTTGA--CCT-ATTCC---GAA-TTGCAATGACTAACG-TCA-AAA-G--CTTGTTA---TCGCTAAT-CCAAC--TG-AA-T-C--G-AAAGTCATAGA-GACAC-AAAACCAT-A-AGTGATTC-A--TTAACTA-T-AAA-------A-AAAATCCTTGCAGTG-AG-AGT---TTAAACCGAAGGG--ACTCAAGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATCAT-TTAGG-C-CT-AC-A-GTTT---TT-ACAT-T-AACAAAGA---AGAGA-CATGGGA
gi|123097 : GCATGATTAA-TTGAAATTCTGAAA--CTTGA--CCC-ATTTCC--GAA-TTAC-ATGAACTACG-TCA-AAAAG--CTTATTA---TGACTACT-CCAAC--TGAAA-C-C--GAAAAGTC-TAGA-GAAGC-AAAACCTT-C-AATGATTCAA--TTAACTA-T-AAA-------A-A----TCTTGCAGTG-AG-TGT---TTAA-CCGAAAGG--ATATAAGGACCA-T------TA-CA-C-ATAGTTTAA-CT-GCCCCTG-AAAGTC-TCCAAATATC-ATTA--TTAGG-CGCT-AC-AGGCTT---TT-ACAT-T-AACAAAGA-T-AAAGA-CATGGGAC
gi|123098 : GCATAATTAA-TTACAATTTTGAAC--TTTGA--CCT-TTATTA--GAA-ATACAAGGATTCGCA-TCA-AAAAT--CTTGTTA---GCACTACTTCCTAC--AA-AAAC-C--A-AAAGTCAAAAA-GACAT---AACCT--C-GATGATTT-A--GTCACTAAT-AAA-------A-CA--CCCTTGCAGTG-AC-AAA---TTAA-CGGAAGGG---TCTGATGACCC-T------TA-AC-C-ATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATAT-T-AATAAA-A-T-AGAAA-TATGG
gi|123099 : GTATGATTAA-TTACAATTTCGATC--TTTGA--CCT-TTATTA--GAA-ATACAATGATTCGGA-TAA-AAAAT--CTTGTTA---GCACTACT-CCTAC--TT-AA-C-T--A-AAAGT-ATAAAAGACAT-GAAACCTT-T-GATGATTT-A--GTCACCG-T-AAA-------ACAC--CCCT-GCAGTG-AC-AAA---TTAA-CGGAAGGA--ATCTGATGACCC-T------TA--A-CTATAGTT--A-TC-GCCCCTG-AAAGTC-TAC-AACATC-GTTAT-TTCAG-C-CT-AT-A-GCTT---TG-ATATAT-ATC-AAGA-T-AGAAA-TATGGGA
gi|123100 : GTACAATTAA-TCGAAACTCTG--------GA--CCT--TCTTA--GAA-G-ACATTGACTAGCG-TCA-AAAAG--TTTGTTG---GCGCTACT-CTGAC--TG-AA-G-C--A-AAATTCATAGA-GA
gi|123100 : ACAC-GAAACCAT-T-GGTGATTG-A--CTCACTT-T-GAA-------A-CA--CTCTTGCAATG-AC-AGA---TTAA-CCAAAGGG--GT-CGATAATCC-T------TA-CA-C--TAGTC--A-TT-TCCCATG-AAAGTT-TCC-AATATC-ATTAT-CTAAG-C-AT-AT-A-GCTT---TT-ATAT-TCAACttaattgattatttgttgtttttcgtcccgccgagaatacacgaaaccattggtgattgactcactttgaaacactcttgcaatgacagattaaccaaaggggtcgataatccttacactagtcatttcccatgaaagtttccaatatcattatctaagcatatagcttttatattcaac
gi|123101 : gtacaattaatcgaaactctggaccttcttagaagacattgactagcgtcaaaaagtttgttggcgctactctgactgaagcaaaattcatagagattaattgattatttgttgtttttcgtcccgccgagaatGTATAATTAA-TTGCAATTTTGAAC--TTTGA--CTTTATT--A--GAA-ATACAACGATTTGCA-TCA-AAAAT--ATTGTTA---GCACTACT-CCTAC--TA-AA-T-C--A-AAAGTGAAAAA-GACAT-GCAGCCTT-C-GATAATTT-A--TTCCCTG-T-AAA-------A-CA--CCCTTGCAGTG-TC-AAA---TTAA-CAAAAGGG--ATCTGATGACCC-T------TA-AC-C-ATAGTT--A-
gi|123102 : GTATAATTAA-TTACAATATTCAAC--TTTGA--CCT-TTATTA--GAA-ATACAACGATTGGCA-TCA-AAAAT--TTTGCTA---GCACTACT-TCTAC--TA-AA-C-C--A-AAAGTCAAAAA-GACAT-GAAACCTT-T-GATGGTTT-T--GTCACTG-T-AAA-------ACAC--C
gi|123103 : GCATAATTAA-TTGGAATTC---------------CT--TCTCA--GAA-TTACAATTGCTCGCA-TCA-AAAAG--CATGTGA---TCACTACT-CC
gi|123104 : ATAATTAA-TTAAATTTCTGAAC--TTTGA--CCT-TTCTAC--GAA-TTACAATGACTCGCG-TCC-AAAAA--CTTGTTG---GTGCTATT-CCGAT--TG-AA-C-C--A-AAAGTCATAGG-GACAC-GAAACCAT-T-GGTGATTG-A--ATCACTT-T-GAA-------A-CA--CCATTGCAGTG-AG-AGA---TTTA-CTGAAGGG--ATCAGAGGACCC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-TCC-AATATC-ATTAT-TCAAG-C-CT-AC-A-ACTT---TT-ACAT-T-AACAAAGA-T-ACAGA-CATGGGAC
gi|123105 : AATTAA-TTGAAAATCTGAATCTTTTGA--CCCGATTCCA--GAAATTACA-TGACTAACGGTCA-AAAGG--CTTGTTA---G-GCTAAC-CCAAC--TG-AA-C-T--G-AAAGTCATAGA-GACGC-AAAACCTT-CAAGTGATTC-AGTTTAACTA-T-AAA-------A-AT--CCCTTGCAGTG-AGTCGACTGTTTA-TCGAATGG--ATCTAAGGACCC-TA-----AA-CA-C-ATAGTT--A-CT-GCCCCTG--AAGTC-TCC-AATACC-ATT-T-TTAGGCC-CT-AC-A-GGTT---TT-ACTT-T-AACAAAGA-T-A-AGACCATGGGAC
gi|123106 : AACTGA-CTGAAATTCTGAAC--TTT----------TTCC--GAA-TTAAAATGACTAGCG-TCA-AAAAG--CTTGTTA---GCTCTACT-CCACC--TG-AA-C-C--A-AA
gi|123107 : ATTAAATTGAAATTCTGAACG-TTTGAGACCC-ATTTCTCTGAA-TTACA-TGACTAACG-TCA-AAG-G--CTTGTTACGTGGGCTAC--CCAACCTTG-AA-CGC--G-AAAGTCATAGA-GACGC-AAAACCTTCC-AGTG-TTC-A--TTAACTA-T-AAA-------A-TC--CCCTTGCAGTGAAG-AG----TTAA-CGGAAGGGAAATCTAAGGACTC-T------TA-CA-C-ATAGTT--A-CT-GCCCCTG-AAAGTC-T-C-AATATCAATCAT-TAAGG-C-CTAACAA-GCTT---TTAACAT-T-AACACAGA-T-AAAGA-CATGGGAC
gi|123108 : TTAA-TTACAATTTTGATC--TT-GA--CCT-TTATTA--GAA-ATACAATGATTGG-A-TAA-AAAAAATCTTGTTA---GCACTACT-CCTAC--TA-AA-A-CTAA-AAAGTCTAAAA-GACAT-GAAACCTT-T-GATGATTT-A--GTCACTG-T-AAA-------A-AC--ACCCCGCAGTG-AC-AAA----TAA-CGGAA-GG--ATCTGATGACCC-T------TA-AC-C-ATAGTT--ATCC-CCCCCTGAAAAGTC-T----ACATC-GTTAT-TTCAG-C-CA-TT-A-GCTTTGATT-AT-T-T-AACAAAGA-T-A-ATA-CATGG
gi|123109 : TTTCC--GAA-TTACAATGATCGGC---CA-AAA-----TTGTT-----TCCTAAT-CCAAC--TG-AA-C-C----AAAGTC-TCGA-GACAC-AAAACCTT-T-AGTGATTC-T--TTAAATT-T-AAACACCTTAA-ACA-CCCTTGCA-TG-AG-AGA---ATAA-CCGAAGG---ATCCAATGACC---------TA-CA-C-AT-GTTTAA-CTAGCCCTTG-AAAGTC-TCC-AAT-----TTATCTTAAG-C-CT-AC-G-GCTT---TT-ACAT-T-AACAAAGA-T-AGATA-CATGGGAC
gi|123110 : TTCA--GAA-TAATAATGACTGGCA-TTT-AAAAG--CTTGTTA---TTGCTACT-CCTAC--GA-AA-G-C--G-GAAGTCATAAA-GACA---AAACCTT-C-GATGACCC------------T-AG----------------CTTGCAGTG-AG-AGA---TTAG-CTGAAGGG--ATCCATGGGCCC-T------TA-CA-C-ATAGTT--A-TT-GCCCCTT-AAAGTT-TCT-AATGTC-ATTAT-GTAAG-C-CT-AT-A-ACTT---TT-ACA--T-AATAAAAA-T-GGAGA-CATGGGAC
gi|123111 : TTCA--GAA-TAATAACGACTGGCA-TTTTAAAAG--CTTGTTA---TTGCTACT-CCTAC--GA-AA-G-C--G-GAA-TCATAAA-GACA---AAACCTT-C-GATGACCC------------T-AG----------------CTTGCAGTG-AG-AGA---TTAG-CTGAAGG---ATCCATTGGCCC-T------TA-CA-C-ATAGTT--A-GT-GCCCCTT-AAATTT-CTT-AAGTTC-A-TAT-GTAAC-C-TT-AT-A-AC-T---TT-ACA--T-AATAAAAA-TGAGGAA-CATGGGAC
gi|123112 : AAA--CTGGTTA---GCACAAAT-CCTAC--TA-AA-C-C--G-AAAGTTATAGA-TACAA-AAAACTTT-C-AATGATTA-A--TTCACAA-T-AAA-------G-AC--CTTTTGCAGTG-AA-AAA---TTAA-CCAAAGGG--ATAAGAGAACTA-T------TA-AA-C-GTAGTT--A--T-GCCTATG-AAAGTC-TCA-AATATC-ATTAT-TAAAA-C-AT-AT-A-CCTT---TT-ACAT-A-AGCAATGA-T-AGAGG-CATAGGAC
gi|123113 : CTACT-CCGAA--TG-AA-C-C--A-AAAGTCATACA-GACAC-GAAACCAT-T-GGTGATTG-A--CTCACTT-TCAAA-------C-AC--ACC-TGCAATG-AC-AGA---TTCA-CCAAAGTG--ATCCGAAGATCCATACAAAATA-CA-A-ATAGTT--A-TT-GCACCTG-AAAGTA-TCC-AATATC-ATTTT-TTAAG-C-CG-AT-A-ACTT---TG-ACAA-A-AATCAAGA-C-AGATA-CATGAGAC