lowQualScore : 1111111111111
lowQualScore : 4 2 2 6666666 2 22 1111111111111 4 22 4 2 1 4
lowQualScore : . . . ....... . .. ............. . .. . . . .
lowQualScore : 2 1 1 8888888 1 99 0000000000000 0 88 4 2 1 4
consensus : TTT-TTACC-TGC-GTCGC-------C-AACGGC--GGA-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
Reference ( gi|110564 ) : TTT-TTACC-TGC-GTCGC-------C-AACGGC--GAA-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110565 : TTT-TTACC-TGC-GTCGC-------C-AACGGC--GAA-------------A-G--CAGG-TCTAGGAT-TCGGG-TCACTCC
gi|110566 : TTT-TTACC-TGC-GTCGC-------C-AACAGT--GGA-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110567 : TTT-TTACC-TGC-GTCGC-------C-AACGGC--GGA-------------A-G--CAGG-TCTAGGAG-TCGGG-TC-CTCC
gi|110569 : TTT-TTACC-TGC-GTCGC-------C-AACGAC--GGA-------------A-G--CAGG-TCTAGGAC-TCGGG-TCACTCC
gi|110570 : TTT-TTACC-TGC-GTTGC-------C-AACCGC--GGA-------------A-G--CAGG-TCTAGGAG-TTGGG-TCACTCC
gi|110571 : TTT-TTACC-TGC-GTCAC-------C-AACAAC--GAA-------------A-G--CAGG-TCTAGGAG-TCTGG-TCACTCC
gi|110572 : TTT-TTACC-TGCCGTCGC-------C-AACGGC--GGA-------------ATG--CAGG-TCTAGGAG-TCGGGATCACTCC
gi|110573 : TTT-TTACC-TGC-GTTGC-------C-AACGGC--GGA-------------A-A--CAGG-TCTAGGAG-TCTTG-TCACTCC
gi|110574 : TTT-TTACC-TGC-ATCGC-------CCAACGGC--GAA-------------AAG--CAGG-TCTAGGAG-TC-GG-TCACTCC
gi|110568 : TTT-TTATC-TGC-GTCGC-------C-AACGGC--GGA-------------A-G--CAGT-TCTAGGAG-TCGGG-TC
gi|110575 : TTTATTACC-TGC-GTCGC-------C-AACGGC--GGA-------------A-G--CA-G-TCTAGGTG-TAGGG-TCACTCC
gi|110576 : TTT-TT--C-TGC--TCGC-------C-AATGGC--GAA-------------A-G--CAGGCCCTAGGAGTTCGGG-TCACTCC
gi|110577 : TTTATTAAC-TGC-GTTGC---------AACGGC--GAA-------------A-GCACAGGTTCTAGGAG-TC-GG-TCACTCC
gi|110578 : TCT-TTACC-TGC-GTCGCCCAAATGC-AACGGCGGGAA-------------A-G--CAG---TTAGGAG-TCGGG-TCA
gi|110579 : TTT-TTACC-TGC-GTCGC-------C-AACGGC--GGAACAAAACGGTCGGA-A--CAGG-TCCAGAGC-TCGGGTTCACTC
gi|110580 : TTT-TTACC-TGC-GTCGC-------C-AACGGC--GAA-------------A-G--
gi|110581 : TTT-TTACC-TGC-ATTGC-------C-AACGGC--GAA-------------A-G--CAG
gi|110582 : TT-TTACC-TG--GTCGC-------C-AACGGC--GGA-------------A-G--CGAG-T-TAGGAG-TC-GG-TCACGCC
gi|110583 : -TTACCATGC-GGCGC-------C-AACGGC--GAA-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110584 : A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
Alignments
lowQualScore : 1111111111111
lowQualScore : 4 2 2 8888888 22 0000000000000 3 22 4 2 0 4
lowQualScore : . . . ....... .. ............. . .. . . . .
lowQualScore : 0 0 0 5555555 66 5555555555555 8 66 2 1 5 2
consensus : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
Reference ( family-816 ) : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110564 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110565 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAT-TCGGG-TCACTCC
gi|110566 : TTT-TTACC-TGC-GTCGCC-------AACAGTGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110567 : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TC-CTCC
gi|110568 : TTT-TTATC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGT-TCTAGGAG-TCGGG-TC
gi|110569 : TTT-TTACC-TGC-GTCGCC-------AACGACGG--A-------------A-G--CAGG-TCTAGGAC-TCGGG-TCACTCC
gi|110570 : TTT-TTACC-TGC-GTTGCC-------AACCGCGG--A-------------A-G--CAGG-TCTAGGAG-TTGGG-TCACTCC
gi|110571 : TTT-TTACC-TGC-GTCACC-------AACAACGA--A-------------A-G--CAGG-TCTAGGAG-TCTGG-TCACTCC
gi|110572 : TTT-TTACC-TGCCGTCGCC-------AACGGCGG--A-------------ATG--CAGG-TCTAGGAG-TCGGGATCACTCC
gi|110573 : TTT-TTACC-TGC-GTTGCC-------AACGGCGG--A-------------A-A--CAGG-TCTAGGAG-TCTTG-TCACTCC
gi|110574 : TTT-TTACC-TGC-ATCGCCC------AACGGCGA--A-------------AAG--CAGG-TCTAGGAG-TC-GG-TCACTCC
gi|110575 : TTTATTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CA-G-TCTAGGTG-TAGGG-TCACTCC
gi|110576 : TTT-TT--C-TGC--TCGCC-------AATGGCGA--A-------------A-G--CAGGCCCTAGGAGTTCGGG-TCACTCC
gi|110577 : TTTATTAAC-TGC-GTTGC--------AACGGCGA--A-------------A-GCACAGGTTCTAGGAG-TC-GG-TCACTCC
gi|110578 : TCT-TTACC-TGC-GTCGCCCAAATGCAACGGCGGGAA-------------A-G--CAG---TTAGGAG-TCGGG-TCA
gi|110579 : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--AACAAAACGGTCGGA-A--CAGG-TCCAGAGC-TCGGGTTCACTC
gi|110580 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--
gi|110581 : TTT-TTACC-TGC-ATTGCC-------AACGGCGA--A-------------A-G--CAG
gi|110582 : TT-TTACC-TG--GTCGCC-------AACGGCGG--A-------------A-G--CGAG-T-TAGGAG-TC-GG-TCACGCC
gi|110583 : -TTACCATGC-GGCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110584 : --A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
Alignments
lowQualScore : 1111111111111
lowQualScore : 4 2 2 8888888 22 0000000000000 3 22 4 2 0 4
lowQualScore : . . . ....... .. ............. . .. . . . .
lowQualScore : 0 0 0 5555555 66 5555555555555 8 66 2 1 5 2
consensus : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
Reference ( family-816 ) : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110564 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110565 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAT-TCGGG-TCACTCC
gi|110566 : TTT-TTACC-TGC-GTCGCC-------AACAGTGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110567 : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TC-CTCC
gi|110568 : TTT-TTATC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGT-TCTAGGAG-TCGGG-TC
gi|110569 : TTT-TTACC-TGC-GTCGCC-------AACGACGG--A-------------A-G--CAGG-TCTAGGAC-TCGGG-TCACTCC
gi|110570 : TTT-TTACC-TGC-GTTGCC-------AACCGCGG--A-------------A-G--CAGG-TCTAGGAG-TTGGG-TCACTCC
gi|110571 : TTT-TTACC-TGC-GTCACC-------AACAACGA--A-------------A-G--CAGG-TCTAGGAG-TCTGG-TCACTCC
gi|110572 : TTT-TTACC-TGCCGTCGCC-------AACGGCGG--A-------------ATG--CAGG-TCTAGGAG-TCGGGATCACTCC
gi|110573 : TTT-TTACC-TGC-GTTGCC-------AACGGCGG--A-------------A-A--CAGG-TCTAGGAG-TCTTG-TCACTCC
gi|110574 : TTT-TTACC-TGC-ATCGCCC------AACGGCGA--A-------------AAG--CAGG-TCTAGGAG-TC-GG-TCACTCC
gi|110575 : TTTATTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CA-G-TCTAGGTG-TAGGG-TCACTCC
gi|110576 : TTT-TT--C-TGC--TCGCC-------AATGGCGA--A-------------A-G--CAGGCCCTAGGAGTTCGGG-TCACTCC
gi|110577 : TTTATTAAC-TGC-GTTGC--------AACGGCGA--A-------------A-GCACAGGTTCTAGGAG-TC-GG-TCACTCC
gi|110578 : TCT-TTACC-TGC-GTCGCCCAAATGCAACGGCGGGAA-------------A-G--CAG---TTAGGAG-TCGGG-TCA
gi|110579 : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--AACAAAACGGTCGGA-A--CAGG-TCCAGAGC-TCGGGTTCACTC
gi|110580 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--
gi|110581 : TTT-TTACC-TGC-ATTGCC-------AACGGCGA--A-------------A-G--CAG
gi|110582 : TT-TTACC-TG--GTCGCC-------AACGGCGG--A-------------A-G--CGAG-T-TAGGAG-TC-GG-TCACGCC
gi|110583 : -TTACCATGC-GGCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110584 : --A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
blockSeqs : A A C CAAATGC GA ACAAAACGGTCGG T CA C T A
blockSeqs : A . . C . . A . T . T
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blockSeqCons :
originalCons : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
finalCons : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
Alignments
lowQualScore : 1111111111111
lowQualScore : 4 2 2 8888888 22 0000000000000 3 22 4 2 0 4
lowQualScore : . . . ....... .. ............. . .. . . . .
lowQualScore : 0 0 0 5555555 66 5555555555555 8 66 2 1 5 2
consensus : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
Reference ( family-816 ) : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110564 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110565 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAT-TCGGG-TCACTCC
gi|110566 : TTT-TTACC-TGC-GTCGCC-------AACAGTGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110567 : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TC-CTCC
gi|110568 : TTT-TTATC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CAGT-TCTAGGAG-TCGGG-TC
gi|110569 : TTT-TTACC-TGC-GTCGCC-------AACGACGG--A-------------A-G--CAGG-TCTAGGAC-TCGGG-TCACTCC
gi|110570 : TTT-TTACC-TGC-GTTGCC-------AACCGCGG--A-------------A-G--CAGG-TCTAGGAG-TTGGG-TCACTCC
gi|110571 : TTT-TTACC-TGC-GTCACC-------AACAACGA--A-------------A-G--CAGG-TCTAGGAG-TCTGG-TCACTCC
gi|110572 : TTT-TTACC-TGCCGTCGCC-------AACGGCGG--A-------------ATG--CAGG-TCTAGGAG-TCGGGATCACTCC
gi|110573 : TTT-TTACC-TGC-GTTGCC-------AACGGCGG--A-------------A-A--CAGG-TCTAGGAG-TCTTG-TCACTCC
gi|110574 : TTT-TTACC-TGC-ATCGCCC------AACGGCGA--A-------------AAG--CAGG-TCTAGGAG-TC-GG-TCACTCC
gi|110575 : TTTATTACC-TGC-GTCGCC-------AACGGCGG--A-------------A-G--CA-G-TCTAGGTG-TAGGG-TCACTCC
gi|110576 : TTT-TT--C-TGC--TCGCC-------AATGGCGA--A-------------A-G--CAGGCCCTAGGAGTTCGGG-TCACTCC
gi|110577 : TTTATTAAC-TGC-GTTGC--------AACGGCGA--A-------------A-GCACAGGTTCTAGGAG-TC-GG-TCACTCC
gi|110578 : TCT-TTACC-TGC-GTCGCCCAAATGCAACGGCGGGAA-------------A-G--CAG---TTAGGAG-TCGGG-TCA
gi|110579 : TTT-TTACC-TGC-GTCGCC-------AACGGCGG--AACAAAACGGTCGGA-A--CAGG-TCCAGAGC-TCGGGTTCACTC
gi|110580 : TTT-TTACC-TGC-GTCGCC-------AACGGCGA--A-------------A-G--
gi|110581 : TTT-TTACC-TGC-ATTGCC-------AACGGCGA--A-------------A-G--CAG
gi|110582 : TT-TTACC-TG--GTCGCC-------AACGGCGG--A-------------A-G--CGAG-T-TAGGAG-TC-GG-TCACGCC
gi|110583 : -TTACCATGC-GGCGCC-------AACGGCGA--A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC
gi|110584 : --A-------------A-G--CAGG-TCTAGGAG-TCGGG-TCACTCC