lowQualScore : 2 44 66 2 2 2 55 2 2 22 2 4 2 2
lowQualScore : . .. .. . . . .. . . .. . . . .
lowQualScore : 0 88 55 0 0 0 88 0 0 88 0 0 0 0
consensus : AAAAACG-A--TAAAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
Reference ( gi|15874 ) : AAAAACG-A--TAAAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15876 : AAAAACG-A--TAAAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15875 : AAAAACG-A--TAAAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15879 : AAAAACG-A--TAAAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15878 : AAAAACG-A--TAAAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15880 : AAAAACG-A--CAAAAG-T-C-GGATTTTTA-TG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15877 : AAAAACG-A--TAAA-G-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15867 : AAAAACG-A--TAAAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCCAATGAG-AT-GAAGT
gi|15873 : AAACACA-A--TAAAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15868 : AAAAACG-A--TAAAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATTC-T-TGTCCCAAATGCG-AT-AAAGT
gi|15869 : AAAAACG-A--TAAAA--T-T-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAACGAGAAT-GAAGT
gi|15881 : AAACACA-A--TAAA-T-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAG
gi|15882 : AAAGACG-AA-TAAAAG-T-G-GGATTTTAC-CG-CTCATT-G-A--GAATCC-TGTGTCCCAAATGAG-AT-GAAGT
gi|15870 : AAAAACG-A--TAAAAT-T-C-GGATTTTTA-CT-CTCATT-G-AGGGAATTC-T-TGTCCCAATTGCG-AT-AAAGT
gi|15871 : AAAAACG-ACTTAAAAT-TTC-GGATTTTTAACT-CTCATT-G-A--GAA-CC-T-TGTCCC-AATGAG-AT-GAAGT
gi|15884 : AAAAACG-A--TAAAAG-T-C-GGG-CTTTA-CG-CTCATTGG-A--GAATCC-TATGTCCCATAAG-G-AT-GAAGT
gi|15883 : AAAACCA-A--TACAAA-T-T-CGATCTTC--CT-CTCATT-G-A--GAA-CC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15872 : AAAAACG-A--TAAAAT-T-TTGGATTTTTA-CCTCTCCAT-G-A--GAATCC-T-TGT-CCAAACGAG-ATGGAAGT
gi|15885 : AAACACG-G--TAAAAT-T-A-AGATTTTTA-CT-CGCATT-G-A--TAATCA-T-CTTCCCGGATGAG-AT-GAA
gi|15886 : AAAACG-A--CAAAAG-T-C-GGATTTTTA-TG-CTCATT-G----GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15887 : AAAACGTA--TAAAATCT-C-GGCTTTTTA-CT-CTCACT-GGA--GAATCCCT-TGTCTCAAATGAG-AT-TGAGT
Alignments
lowQualScore : 1 44 1 22 1 1 1 22 1 1 22 1 3 1 1
lowQualScore : . .. . .. . . . .. . . .. . . . .
lowQualScore : 9 55 9 99 9 9 9 99 9 9 66 9 8 9 9
consensus : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
Reference ( family-815 ) : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15867 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCCAATGAG-AT-GAAGT
gi|15868 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATTC-T-TGTCCCAAATGCG-AT-AAAGT
gi|15869 : AAAAACG-A--TA-AAAT-T---GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAACGAGAAT-GAAGT
gi|15870 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-AGGGAATTC-T-TGTCCCAATTGCG-AT-AAAGT
gi|15871 : AAAAACG-ACTTA-AAAT-TTC-GGATTTTTAACT-CTCATT-G-A--GAA-CC-T-TGTCCC-AATGAG-AT-GAAGT
gi|15872 : AAAAACG-A--TA-AAAT-T-TTGGATTTTTA-CCTCTCCAT-G-A--GAATCC-T-TGT-CCAAACGAG-ATGGAAGT
gi|15873 : AAACACA-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15874 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15875 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15876 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15877 : AAAAACG-A--TA-AA-G-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15878 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15879 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15880 : AAAAACG-A--CA-AAAG-T-C-GGATTTTTA-TG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15881 : AAACACA-A--TA-AA-T-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAG
gi|15882 : AAAGACG-AA-TA-AAAG-T-G-GGATTTTAC-CG-CTCATT-G-A--GAATCC-TGTGTCCCAAATGAG-AT-GAAGT
gi|15883 : AAAACCA-A--TACAAAT-T-C-G-ATCTTC--CT-CTCATT-G-A--GAA-CC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15884 : AAAAACG-A--TA-AAAG-T-C-GGG-CTTTA-CG-CTCATTGG-A--GAATCC-TATGTCCCATAAG-G-AT-GAAGT
gi|15885 : AAACACG-G--TA-AAAT-T-A-AGATTTTTA-CT-CGCATT-G-A--TAATCA-T-CTTCCCGGATGAG-AT-GAA
gi|15886 : AAAACG-A--CA-AAAG-T-C-GGATTTTTA-TG-CTCATT-G----GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15887 : AAAACGTA--TA-AAATCT-C-GGCTTTTTA-CT-CTCACT-GGA--GAATCCCT-TGTCTCAAATGAG-AT-TGAGT
Alignments
lowQualScore : 1 44 1 22 1 1 1 22 1 1 22 1 3 1 1
lowQualScore : . .. . .. . . . .. . . .. . . . .
lowQualScore : 9 55 9 99 9 9 9 99 9 9 66 9 8 9 9
consensus : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
Reference ( family-815 ) : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15867 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCCAATGAG-AT-GAAGT
gi|15868 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATTC-T-TGTCCCAAATGCG-AT-AAAGT
gi|15869 : AAAAACG-A--TA-AAAT-T---GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAACGAGAAT-GAAGT
gi|15870 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-AGGGAATTC-T-TGTCCCAATTGCG-AT-AAAGT
gi|15871 : AAAAACG-ACTTA-AAAT-TTC-GGATTTTTAACT-CTCATT-G-A--GAA-CC-T-TGTCCC-AATGAG-AT-GAAGT
gi|15872 : AAAAACG-A--TA-AAAT-T-TTGGATTTTTA-CCTCTCCAT-G-A--GAATCC-T-TGT-CCAAACGAG-ATGGAAGT
gi|15873 : AAACACA-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15874 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15875 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15876 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15877 : AAAAACG-A--TA-AA-G-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15878 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15879 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15880 : AAAAACG-A--CA-AAAG-T-C-GGATTTTTA-TG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15881 : AAACACA-A--TA-AA-T-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAG
gi|15882 : AAAGACG-AA-TA-AAAG-T-G-GGATTTTAC-CG-CTCATT-G-A--GAATCC-TGTGTCCCAAATGAG-AT-GAAGT
gi|15883 : AAAACCA-A--TACAAAT-T-C-G-ATCTTC--CT-CTCATT-G-A--GAA-CC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15884 : AAAAACG-A--TA-AAAG-T-C-GGG-CTTTA-CG-CTCATTGG-A--GAATCC-TATGTCCCATAAG-G-AT-GAAGT
gi|15885 : AAACACG-G--TA-AAAT-T-A-AGATTTTTA-CT-CGCATT-G-A--TAATCA-T-CTTCCCGGATGAG-AT-GAA
gi|15886 : AAAACG-A--CA-AAAG-T-C-GGATTTTTA-TG-CTCATT-G----GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15887 : AAAACGTA--TA-AAATCT-C-GGCTTTTTA-CT-CTCACT-GGA--GAATCCCT-TGTCTCAAATGAG-AT-TGAGT
blockSeqs : T CT C TC T T A CT G G GG C G A G
blockSeqs : . A . T . . . T . . . . A . .
blockSeqs : . . . T . . . T . . . . . . .
blockSeqs : . . . T . . . T . . . . . . .
blockSeqs : . . . T . . . T . . . . . . .
blockSeqs : . . . T . . . T . . . . . . .
blockSeqs : . . . T . . . G . . . . . . .
blockSeqs : . . . G . . . G . . . . . . .
blockSeqs : . . . G . . . G . . . . . . .
blockSeqs : . . . G . . . G . . . . . . .
blockSeqs : . . . G . . . G . . . . . . .
blockSeqs : . . . G . . . G . . . . . . .
blockSeqs : . . . G . . . G . . . . . . .
blockSeqs : . . . G . . . T . . . . . . .
blockSeqs : . . . T . . . G . . . . . . .
blockSeqs : . . . G . . . T . . . . . . .
blockSeqs : . . . T . . . G . . . . . . .
blockSeqs : . . . G . . . T . . . . . . .
blockSeqs : . . . T . . . G . . . . . . .
blockSeqs : . . . G . . . T . . . . . . .
blockSeqCons :
originalCons : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
finalCons : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
Alignments
lowQualScore : 1 44 1 22 1 1 1 22 1 1 22 1 3 1 1
lowQualScore : . .. . .. . . . .. . . .. . . . .
lowQualScore : 9 55 9 99 9 9 9 99 9 9 66 9 8 9 9
consensus : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
Reference ( family-815 ) : AAAAACG-A--TA-AAAN-T-C-GGATTTTTA-CN-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15867 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCCAATGAG-AT-GAAGT
gi|15868 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATTC-T-TGTCCCAAATGCG-AT-AAAGT
gi|15869 : AAAAACG-A--TA-AAAT-T---GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAACGAGAAT-GAAGT
gi|15870 : AAAAACG-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-AGGGAATTC-T-TGTCCCAATTGCG-AT-AAAGT
gi|15871 : AAAAACG-ACTTA-AAAT-TTC-GGATTTTTAACT-CTCATT-G-A--GAA-CC-T-TGTCCC-AATGAG-AT-GAAGT
gi|15872 : AAAAACG-A--TA-AAAT-T-TTGGATTTTTA-CCTCTCCAT-G-A--GAATCC-T-TGT-CCAAACGAG-ATGGAAGT
gi|15873 : AAACACA-A--TA-AAAT-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15874 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15875 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15876 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15877 : AAAAACG-A--TA-AA-G-T-C-GGATTTTTA-CG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15878 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15879 : AAAAACG-A--TA-AAAG-T-C-GGATTTTTA-CG-CTCATT-G-A--GAAACC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15880 : AAAAACG-A--CA-AAAG-T-C-GGATTTTTA-TG-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15881 : AAACACA-A--TA-AA-T-T-C-GGATTTTTA-CT-CTCATT-G-A--GAATCC-T-TGTCCCAAATGAG-AT-GAAG
gi|15882 : AAAGACG-AA-TA-AAAG-T-G-GGATTTTAC-CG-CTCATT-G-A--GAATCC-TGTGTCCCAAATGAG-AT-GAAGT
gi|15883 : AAAACCA-A--TACAAAT-T-C-G-ATCTTC--CT-CTCATT-G-A--GAA-CC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15884 : AAAAACG-A--TA-AAAG-T-C-GGG-CTTTA-CG-CTCATTGG-A--GAATCC-TATGTCCCATAAG-G-AT-GAAGT
gi|15885 : AAACACG-G--TA-AAAT-T-A-AGATTTTTA-CT-CGCATT-G-A--TAATCA-T-CTTCCCGGATGAG-AT-GAA
gi|15886 : AAAACG-A--CA-AAAG-T-C-GGATTTTTA-TG-CTCATT-G----GAATCC-T-TGTCCCAAATGAG-AT-GAAGT
gi|15887 : AAAACGTA--TA-AAATCT-C-GGCTTTTTA-CT-CTCACT-GGA--GAATCCCT-TGTCTCAAATGAG-AT-TGAGT