lowQualScore : 222 111 111111111 1
lowQualScore : 2 2 4 33 2 2 2 2 2 6 77 2 55 2 2 2 33 222 2 333 2 88 2 6 2 66 0 444 222222222 4 55555 4 22 22 2 555 2 22 2 2 4 2 2 888 2 22 66
lowQualScore : . . . .. . . . . . . .. . .. . . . .. ... . ... . .. . . . .. . ... ......... . ..... . .. .. . ... . .. . . . . . ... . .. ..
lowQualScore : 2 2 4 11 2 1 1 1 1 3 11 1 00 2 2 2 11 222 2 999 2 33 2 4 2 11 6 777 999999999 0 00000 0 88 88 0 555 0 88 0 0 0 0 0 999 0 88 88
consensus : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTGAC--AC-A--G--C-CCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
Reference ( gi|127015 ) : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCACC-C--TTTGAG--AC-A--G--C-CCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
gi|127022 : AAAAT-A-C-T--TA-T-TT-ATCTC-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGAGAAA---TTGT-T--C-AAAATCACC-CCCTTTGCG--AC-A--G--C-CCCCT-G-----A-AG--AT--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATGAT
gi|127018 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCAT---TGA-GAA---TTGT-C--A-AAAATCGCC-C--TTTGAC--AC-G--C--C-CCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT---T--TTATAAT
gi|127016 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTTGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAATC-CC-C--TTTGAC--AC-A--A----CCCCT-G-----A-AT--GA--TTT-TG---G--CGA---GA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127029 : AAAAT-A-C-T--TA-T-TT-ATTCT-CTACAGTTGGCGCA-A--CA-T-A-TATTTCATG--GGA-AAA---TTGT-CGAA-AAAATCACT-C--TT-GAG--AC-A--G--G-CCCCT-G-----ATAA--GA--TTTATG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTTTCCC--ATATAAT
gi|127020 : AAAAT-A-C-TCATA-T-TT-ATTCTGCT-C-GTTTGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAAT-GCC-C--TT-AAC--AC-A--A--C-CCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGT-C-C-TA-C-A-T-T-TTTTC--CC--ATATAAT
gi|127019 : AAAAA-A-A-T--TA-T-TG-ATCCT-TT-C-GTTGGC--A-A--CA-T-A-T--TTCCT---TGA-AAA---TTGT-C--A-AAAATTGCC-C--TTTGAC--AC----G--C-CCCTT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-A-TA-C---C-A-TTTTT--CC--TTATAAT
gi|127017 : AAAAT-A-CCT--TA-T-TT--TTCT-CT-C-GTTTGC--A-ATACA-T-A-T--TT-AT---TGA-AAA---TTGT-C--ATAAAATCGCC-C--TTTGAC--A--A--A--C-CCCCT-G-----A-AT--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127024 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-AA-CA-T-A-T--TTTATG--CGG-CAA---TTGT-C--A-AAAATCGCC-C--TTTGAC--AC----G--C-CCCCT-G-----A-AA--AA--TTT-CGA--G-CTGA--TGA-C-A-TGCC-A-C-T-TCTT-------TTATAAT
gi|127028 : AAAAT---C-T--TA-T-TT-ATTCT-CT-C-GTTGG---A-A--CACT-A-T--TTTATGTCTGA-AAA---TTGT-C--A-AAAA-CACC-C--TTTGAGT-AC-A--G--C-CCT---------A-AA--GA--TTT-GG---G-CCGAAGTGA-CGC-TA-C-C-CAC-TTTTT--CC--TTATAAT
gi|127023 : AAAAT-A-C-T--TA-T-TT-ATTCT-CA-A-GTTGGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTGAC--AC----------------------------A--TTT-TG---G-CCGA--TGA-C-C-TA-CAA-T-T-TTTTT--CA--TTATAAT
gi|127025 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--TA-T--------------------A---TTGT-C--A-AAAATCGCC-C--TTTGAC--AC----G--C-CCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT--TC---TATAAT
gi|127026 : AAAAT-A-G-T--TA-T-TT-ATGCT-TT-C-GTTGGC--A-A--AA-T-A-T--TTCCT---TGA-AAA---TTTT-C--A-AAAATCGCC-C--TTTGAA--AC---------------------A-AA--GA--TTT-TG---G-ACGA--TGA-C-C-TATC-A---T-TGTTT--TC--TTATAAT
gi|127027 : AAAAT-A-CCT--TA-T-TTTATTCT-CT-C--TTGGC--A-A--CA-A-A-T--TTCAT---TGA-AAAATTTTGT-CCCA-AAAATCGCC-CGCTTTGAACCACCA--A--C-CCCCTTG-----A-AA--GA--TGT-TG---G-CTGA--TTA-C-CTTA-C-A-A-T-TTTTT--CCT-TTATAAT
gi|127030 : AAAAT-A-C-T--TA-T-TT-ATT-T-CT-CGGTTGGCA-A-A--CA-T-A-T--TTCAT---TGA-GAA---TTGTGC--A-AAAATCG-C-C--TTTGA---AC-A--C--C-ACCCT-GAAAAAA-AA--AA--AAT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTTCT--TT--TTATAAT
gi|127031 : AAAATTA-C-T--TAATATT-ATTCT-CT-C-GTTG-C--A-A--CA-T-A-T----CATG-------AA---TTGT-C--A-AAA-TCGCC-C--CT---G--AC-A--A--CGCCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-G-TC-C-A-C-T-TCTTT------TTATAAT
gi|127021 : AAAAT-A-C-T--TA-A-TT-ATTCT-CT-C-GTTGGC--A-A--C
gi|127032 : AAAT-A-C-T--TA-A-TT-ATTCT-CT-C-GTTGGC--A-A--CA-TAA-T--TTAAT---TGA-ATA----TGT-C----AAAATCGCCGC--TTTTGC--AC-A--G----CCCCT-G--------A--GA--TTT-T----G-CCGA--T-A-C-C-TA-C-A-A---TTTTT--CC--TTATAATcaacaggcccccctggaaaggatgttatttgccgatgaacctaacaatttttttccctttataat
gi|127033 : AAT-AAC-T--TA-T-T--ATTCT-CT-C-GTTGGCC-A-A--CA-T-A-T--TTCATG--TGA-AA----TTGT-C--A-AAAATC-CC-C--TTTGAG--AC-A--G--C-CCC-T-G-----A-A---GA--TAT-TG---G-C-GA--TGA-C-C-TA-C-A-C---TTTTT--CC--TTATAAT
gi|127034 : -TT-ATTCT-CT-CTGTTG-C--ACA--CA-T-AAT--TTCATG--TGA-AAA---TTGT-CA-A-AAAATCA-C-C--TTAGAAT-AC-ATGA--C-CCCCTAG-----AGAA--GATCTTT-TG---GTCCGA--TGA-C-CTTA-C-A-C-TACCTTT--CCA-TTATAAT
gi|127035 : aattctataatc--AC-A--A--C-CCCTT-G-----A-AA--GA--TTT-TG---G-CCAG--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATGAT
gi|127021 : c--AC-A--GGCC-CCCCT-G-----G-AAAGGA--TGT-TATTTG-CCGA--TGAAC-C-TAAC-AAT-T-TTTTT--CCCTTTATAAT
Alignments
lowQualScore : 222 1
lowQualScore : 2 2 4 22 2 2 2 2 2 6 66 2 44 2 2 2 22 000 2 333 2 77 2 2 55 0 333 44 99999 1 3 44444 3 22 22 1 555 1 22 1 1 3 1 1 888 1 22 66
lowQualScore : . . . .. . . . . . . .. . .. . . . .. ... . ... . .. . . .. . ... .. ..... . . ..... . .. .. . ... . .. . . . . . ... . .. ..
lowQualScore : 1 1 2 99 1 0 0 0 0 0 88 0 88 1 1 1 99 555 1 777 1 99 1 1 88 1 777 88 11111 0 8 88888 8 66 66 9 222 9 66 9 9 8 4 9 000 9 66 44
consensus : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
Reference ( family-809 ) : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
gi|127015 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCACC-C--TTTG---A--GAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
gi|127016 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTTGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAATC-CC-C--TTTG---A--CAC-AA---CCCCT-G-----A-AT--GA--TTT-TG---G--CGA---GA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127017 : AAAAT-A-CCT--TA-T-TT--TTCT-CT-C-GTTTGC--A-ATACA-T-A-T--TT-AT---TGA-AAA---TTGT-C--ATAAAATCGCC-C--TTTG---A--CA--AA--CCCCCT-G-----A-AT--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127018 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCAT---TGA-GAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-GC--CCCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT---T--TTATAAT
gi|127019 : AAAAA-A-A-T--TA-T-TG-ATCCT-TT-C-GTTGGC--A-A--CA-T-A-T--TTCCT---TGA-AAA---TTGT-C--A-AAAATTGCC-C--TTTG---A--CAC--G--CCCCTT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-A-TA-C---C-A-TTTTT--CC--TTATAAT
gi|127020 : AAAAT-A-C-TCATA-T-TT-ATTCTGCT-C-GTTTGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAAT-GCC-C--TT-A---A--CAC-AA--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGT-C-C-TA-C-A-T-T-TTTTC--CC--ATATAAT
gi|127021 : AAAAT-A-C-T--TA-A-TT-ATTCT-CT-C-GTTGGC--A-A--C
gi|127021 : AC-AGGCCCCCCT-G-----G-AAAGGA--TGT-TATTTG-CCGA--TGAAC-C-TAAC-AAT-T-TTTTT--CCCTTTATAATcaacaggcccccctggaaaggatgttatttgccgatgaacctaacaatttttttccctttataat
gi|127022 : aaaatacttaattattctctcgttggcaaccaAAAAT-A-C-T--TA-T-TT-ATCTC-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGAGAAA---TTGT-T--C-AAAATCACC-CCCTTTG---C--GAC-AG--CCCCCT-G-----A-AG--AT--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATGAT
gi|127023 : AAAAT-A-C-T--TA-T-TT-ATTCT-CA-A-GTTGGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-------------------------A--TTT-TG---G-CCGA--TGA-C-C-TA-CAA-T-T-TTTTT--CA--TTATAAT
gi|127024 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-AA-CA-T-A-T--TTTATG--CGG-CAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC--G--CCCCCT-G-----A-AA--AA--TTT-CGA--G-CTGA--TGA-C-A-TGCC-A-C-T-TCTT-------TTATAAT
gi|127025 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--TA-T--------------------A---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC--G--CCCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT--TC---TATAAT
gi|127026 : AAAAT-A-G-T--TA-T-TT-ATGCT-TT-C-GTTGGC--A-A--AA-T-A-T--TTCCT---TGA-AAA---TTTT-C--A-AAAATCGCC-C--TTTG---A--AAC------------------A-AA--GA--TTT-TG---G-ACGA--TGA-C-C-TATC-A---T-TGTTT--TC--TTATAAT
gi|127027 : AAAAT-A-CCT--TA-T-TTTATTCT-CT-C--TTGGC--A-A--CA-A-A-T--TTCAT---TGA-AAAATTTTGT-CCCA-AAAATCGCC-CGCTTTG---AACCACCAA--CCCCCTTG-----A-AA--GA--TGT-TG---G-CTGA--TTA-C-CTTA-C-A-A-T-TTTTT--CCT-TTATAAT
gi|127028 : AAAAT---C-T--TA-T-TT-ATTCT-CT-C-GTTGG---A-A--CACT-A-T--TTTATGTCTGA-AAA---TTGT-C--A-AAAA-CACC-C--TTTG---AG-TAC-AG--CCCT---------A-AA--GA--TTT-GG---G-CCGAAGTGA-CGC-TA-C-C-CAC-TTTTT--CC--TTATAAT
gi|127029 : AAAAT-A-C-T--TA-T-TT-ATTCT-CTACAGTTGGCGCA-A--CA-T-A-TATTTCATG--GGA-AAA---TTGT-CGAA-AAAATCACT-C--TT-G---A--GAC-AG--GCCCCT-G-----ATAA--GA--TTTATG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTTTCCC--ATATAAT
gi|127030 : AAAAT-A-C-T--TA-T-TT-ATT-T-CT-CGGTTGGCA-A-A--CA-T-A-T--TTCAT---TGA-GAA---TTGTGC--A-AAAATCG-C-C--TTTG---A---AC-AC--CACCCT-GAAAAAA-AA--AA--AAT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTTCT--TT--TTATAAT
gi|127031 : AAAATTA-C-T--TAATATT-ATTCT-CT-C-GTTG-C--A-A--CA-T-A-T----CATG-------AA---TTGT-C--A-AAA-TCGCC-C--CT-G---A--CAA-CG--CCCC-T-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-G-TC-C-A-C-T-TCTTT------TTATAAT
gi|127032 : AAAT-A-C-T--TA-A-TT-ATTCT-CT-C-GTTGGC--A-A--CA-TAA-T--TTAAT---TGA-ATA----TGT-C----AAAATCGCCGC--TTTT---G--CAC-AG---CCCCT-G--------A--GA--TTT-T----G-CCGA--T-A-C-C-TA-C-A-A---TTTTT--CC--TTATAAT
gi|127033 : AAT-AAC-T--TA-T-T--ATTCT-CT-C-GTTGGCC-A-A--CA-T-A-T--TTCATG--TGA-AA----TTGT-C--A-AAAATC-CC-C--TTTG---A--GAC-AG--CCCC-T-G-----A-A---GA--TAT-TG---G-C-GA--TGA-C-C-TA-C-A-C---TTTTT--CC--TTATAAT
gi|127034 : -TT-ATTCT-CT-CTGTTG-C--ACA--CA-T-AAT--TTCATG--TGA-AAA---TTGT-CA-A-AAAATCA-C-C--TTAGAATA--CAT-GA--CCCCCTAG-----AGAA--GATCTTT-TG---GTCCGA--TGA-C-CTTA-C-A-C-TACCTTT--CCA-TTATAAT
gi|127035 : aattctataatc--CAC-AA--CCCCTT-G-----A-AA--GA--TTT-TG---G-CCAG--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATGAT
Alignments
lowQualScore : 222 1
lowQualScore : 2 2 4 22 2 2 2 2 2 6 66 2 44 2 2 2 22 000 2 333 2 77 2 2 55 0 333 44 99999 1 3 44444 3 22 22 1 555 1 22 1 1 3 1 1 888 1 22 66
lowQualScore : . . . .. . . . . . . .. . .. . . . .. ... . ... . .. . . .. . ... .. ..... . . ..... . .. .. . ... . .. . . . . . ... . .. ..
lowQualScore : 1 1 2 99 1 0 0 0 0 0 88 0 88 1 1 1 99 555 1 777 1 99 1 1 88 1 777 88 11111 0 8 88888 8 66 66 9 222 9 66 9 9 8 4 9 000 9 66 44
consensus : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
Reference ( family-809 ) : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
gi|127015 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCACC-C--TTTG---A--GAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
gi|127016 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTTGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAATC-CC-C--TTTG---A--CAC-AA---CCCCT-G-----A-AT--GA--TTT-TG---G--CGA---GA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127017 : AAAAT-A-CCT--TA-T-TT--TTCT-CT-C-GTTTGC--A-ATACA-T-A-T--TT-AT---TGA-AAA---TTGT-C--ATAAAATCGCC-C--TTTG---A--CA--AA--CCCCCT-G-----A-AT--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127018 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCAT---TGA-GAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-GC--CCCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT---T--TTATAAT
gi|127019 : AAAAA-A-A-T--TA-T-TG-ATCCT-TT-C-GTTGGC--A-A--CA-T-A-T--TTCCT---TGA-AAA---TTGT-C--A-AAAATTGCC-C--TTTG---A--CAC--G--CCCCTT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-A-TA-C---C-A-TTTTT--CC--TTATAAT
gi|127020 : AAAAT-A-C-TCATA-T-TT-ATTCTGCT-C-GTTTGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAAT-GCC-C--TT-A---A--CAC-AA--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGT-C-C-TA-C-A-T-T-TTTTC--CC--ATATAAT
gi|127021 : AAAAT-A-C-T--TA-A-TT-ATTCT-CT-C-GTTGGC--A-A--C
gi|127021 : AC-AGGCCCCCCT-G-----G-AAAGGA--TGT-TATTTG-CCGA--TGAAC-C-TAAC-AAT-T-TTTTT--CCCTTTATAATcaacaggcccccctggaaaggatgttatttgccgatgaacctaacaatttttttccctttataat
gi|127022 : aaaatacttaattattctctcgttggcaaccaAAAAT-A-C-T--TA-T-TT-ATCTC-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGAGAAA---TTGT-T--C-AAAATCACC-CCCTTTG---C--GAC-AG--CCCCCT-G-----A-AG--AT--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATGAT
gi|127023 : AAAAT-A-C-T--TA-T-TT-ATTCT-CA-A-GTTGGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-------------------------A--TTT-TG---G-CCGA--TGA-C-C-TA-CAA-T-T-TTTTT--CA--TTATAAT
gi|127024 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-AA-CA-T-A-T--TTTATG--CGG-CAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC--G--CCCCCT-G-----A-AA--AA--TTT-CGA--G-CTGA--TGA-C-A-TGCC-A-C-T-TCTT-------TTATAAT
gi|127025 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--TA-T--------------------A---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC--G--CCCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT--TC---TATAAT
gi|127026 : AAAAT-A-G-T--TA-T-TT-ATGCT-TT-C-GTTGGC--A-A--AA-T-A-T--TTCCT---TGA-AAA---TTTT-C--A-AAAATCGCC-C--TTTG---A--AAC------------------A-AA--GA--TTT-TG---G-ACGA--TGA-C-C-TATC-A---T-TGTTT--TC--TTATAAT
gi|127027 : AAAAT-A-CCT--TA-T-TTTATTCT-CT-C--TTGGC--A-A--CA-A-A-T--TTCAT---TGA-AAAATTTTGT-CCCA-AAAATCGCC-CGCTTTG---AACCACCAA--CCCCCTTG-----A-AA--GA--TGT-TG---G-CTGA--TTA-C-CTTA-C-A-A-T-TTTTT--CCT-TTATAAT
gi|127028 : AAAAT---C-T--TA-T-TT-ATTCT-CT-C-GTTGG---A-A--CACT-A-T--TTTATGTCTGA-AAA---TTGT-C--A-AAAA-CACC-C--TTTG---AG-TAC-AG--CCCT---------A-AA--GA--TTT-GG---G-CCGAAGTGA-CGC-TA-C-C-CAC-TTTTT--CC--TTATAAT
gi|127029 : AAAAT-A-C-T--TA-T-TT-ATTCT-CTACAGTTGGCGCA-A--CA-T-A-TATTTCATG--GGA-AAA---TTGT-CGAA-AAAATCACT-C--TT-G---A--GAC-AG--GCCCCT-G-----ATAA--GA--TTTATG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTTTCCC--ATATAAT
gi|127030 : AAAAT-A-C-T--TA-T-TT-ATT-T-CT-CGGTTGGCA-A-A--CA-T-A-T--TTCAT---TGA-GAA---TTGTGC--A-AAAATCG-C-C--TTTG---A---AC-AC--CACCCT-GAAAAAA-AA--AA--AAT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTTCT--TT--TTATAAT
gi|127031 : AAAATTA-C-T--TAATATT-ATTCT-CT-C-GTTG-C--A-A--CA-T-A-T----CATG-------AA---TTGT-C--A-AAA-TCGCC-C--CT-G---A--CAA-CG--CCCC-T-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-G-TC-C-A-C-T-TCTTT------TTATAAT
gi|127032 : AAAT-A-C-T--TA-A-TT-ATTCT-CT-C-GTTGGC--A-A--CA-TAA-T--TTAAT---TGA-ATA----TGT-C----AAAATCGCCGC--TTTT---G--CAC-AG---CCCCT-G--------A--GA--TTT-T----G-CCGA--T-A-C-C-TA-C-A-A---TTTTT--CC--TTATAAT
gi|127033 : AAT-AAC-T--TA-T-T--ATTCT-CT-C-GTTGGCC-A-A--CA-T-A-T--TTCATG--TGA-AA----TTGT-C--A-AAAATC-CC-C--TTTG---A--GAC-AG--CCCC-T-G-----A-A---GA--TAT-TG---G-C-GA--TGA-C-C-TA-C-A-C---TTTTT--CC--TTATAAT
gi|127034 : -TT-ATTCT-CT-CTGTTG-C--ACA--CA-T-AAT--TTCATG--TGA-AAA---TTGT-CA-A-AAAATCA-C-C--TTAGAATA--CAT-GA--CCCCCTAG-----AGAA--GATCTTT-TG---GTCCGA--TGA-C-CTTA-C-A-C-TACCTTT--CCA-TTATAAT
gi|127035 : aattctataatc--CAC-AA--CCCCTT-G-----A-AA--GA--TTT-TG---G-CCAG--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATGAT
blockSeqs : T A C CA A A T G A A GC C TA C A A AT GTC G ATT G CC T G CC AAT AC AGGC C T AAAAA T AG TC A TTT T AG A G T C A AT A TC CT
blockSeqs : . . C . . . . . . G A . A . . . . G . . . GA . . GC . G CAA C A . G . . . A . . . . T A . CA . . T
blockSeqs : . . . . . . . . . T C . . . . . . G . . . A . . . . . AA C . . . . . . . . . . . . C . C . . A
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . AA T . . . . . . . . . . . . C . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . GC C . . . . . . . . . . . . T . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . AA C . . . . . . . . . . . . C . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . AG C . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . AG C . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . AG C . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . AC C . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . CG C . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . AG C . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . AG C . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . GA C . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . AA T . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqCons : ***
originalCons : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCATG--TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
finalCons : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-GTTGGC--A-A--CA-T-A-T--TTCAT---TGA-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
Alignments
lowQualScore : 111 1
lowQualScore : 2 2 4 22 2 2 2 2 2 4 2 44 2 66 2 2 2 22 444 2 2 333 2 77 2 2 55 0 333 44 999999 3 6666666 22 22 1 555 1 22 1 1 3 1 1 888 1 22 66
lowQualScore : . . . .. . . . . . . . .. . .. . . . .. ... . . ... . .. . . .. . ... .. ...... . ....... .. .. . ... . .. . . . . . ... . .. ..
lowQualScore : 1 1 2 99 1 0 0 0 0 0 0 88 0 88 1 1 1 99 222 1 1 777 1 99 1 1 88 1 777 88 888888 8 1111111 66 66 9 222 9 66 9 9 8 4 9 000 9 66 44
consensus : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-G-TTGGC--A-A--CA-T-A-T--TTCAT---TG-A-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
Reference ( family-809 ) : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-G-TTGGC--A-A--CA-T-A-T--TTCAT---TG-A-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
gi|127015 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-G-TTGGC--A-A--CA-T-A-T--TTCATG--TG-A-AAA---TTGT-C--A-AAAATCACC-C--TTTG---A--GAC-AG--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATAAT
gi|127016 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-G-TTTGC--A-A--CA-T-A-T--TTCAT---TG-A-AAA---TTGT-C--A-AAAATC-CC-C--TTTG---A--CAC-AA---CCCCT-G-----A-AT--GA--TTT-TG---G--CGA---GA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127017 : AAAAT-A-CCT--TA-T-TT--TTCT-CT-C-G-TTTGC--A-ATACA-T-A-T--TT-AT---TG-A-AAA---TTGT-C--ATAAAATCGCC-C--TTTG---A--CA--AA--CCCCCT-G-----A-AT--GA--TTT-TG---G-CCGA--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATAAT
gi|127018 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-G-TTGGC--A-A--CA-T-A-T--TTCAT---TG-A-GAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-GC--CCCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT---T--TTATAAT
gi|127019 : AAAAA-A-A-T--TA-T-TG-ATCCT-TT-C-G-TTGGC--A-A--CA-T-A-T--TTCCT---TG-A-AAA---TTGT-C--A-AAAATTGCC-C--TTTG---A--CAC--G--CCCCTT-G-----A-AA--GA--TTT-TG---G-CCGA--TGA-C-A-TA-C---C-A-TTTTT--CC--TTATAAT
gi|127020 : AAAAT-A-C-TCATA-T-TT-ATTCTGCT-C-G-TTTGC--A-A--CA-T-A-T--TTCAT---TG-A-AAA---TTGT-C--A-AAAAT-GCC-C--TT-A---A--CAC-AA--CCCCCT-G-----A-AA--GA--TTT-TG---G-CCGA--TGT-C-C-TA-C-A-T-T-TTTTC--CC--ATATAAT
gi|127021 : AAAAT-A-C-T--TA-A-TT-ATTCT-CT-C-G-TTGGC--A-A--C
gi|127021 : AC-AGGCCCCCCT-G-----G-AAAGGA--TGT-TATTTG-CCGA--TGAAC-C-TAAC-AAT-T-TTTTT--CCCTTTATAATcaacaggcccccctggaaaggatgttatttgccgatgaacctaacaatttttttccctttataat
gi|127022 : aaaatacttaattattctctcgttggcaaccaAAAAT-A-C-T--TA-T-TT-ATCTC-CT-C-G-TTGGC--A-A--CA-T-A-T--TTCATG--TG-AGAAA---TTGT-T--C-AAAATCACC-CCCTTTG---C--GAC-AG--CCCCCT-G-----A-AG--AT--TTT-TG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTT--CC--TTATGAT
gi|127023 : AAAAT-A-C-T--TA-T-TT-ATTCT-CA-A-G-TTGGC--A-A--CA-T-A-T--TTCAT---TG-A-AAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC-------------------------A--TTT-TG---G-CCGA--TGA-C-C-TA-CAA-T-T-TTTTT--CA--TTATAAT
gi|127024 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-G-TTGGC--A-AA-CA-T-A-T--TTTATG--CG-G-CAA---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC--G--CCCCCT-G-----A-AA--AA--TTT-CGA--G-CTGA--TGA-C-A-TGCC-A-C-T-TCTT-------TTATAAT
gi|127025 : AAAAT-A-C-T--TA-T-TT-ATTCT-CT-C-G-TTGGC--A-A--TA-T---------------------A---TTGT-C--A-AAAATCGCC-C--TTTG---A--CAC--G--CCCCCT-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTCTT--TC---TATAAT
gi|127026 : AAAAT-A-G-T--TA-T-TT-ATGCT-TT-C-G-TTGGC--A-A--AA-T-A-T--TTCCT---TG-A-AAA---TTTT-C--A-AAAATCGCC-C--TTTG---A--AAC------------------A-AA--GA--TTT-TG---G-ACGA--TGA-C-C-TATC-A---T-TGTTT--TC--TTATAAT
gi|127027 : AAAAT-A-CCT--TA-T-TTTATTCT-CT-C---TTGGC--A-A--CA-A-A-T--TTCAT---TG-A-AAAATTTTGT-CCCA-AAAATCGCC-CGCTTTG---AACCACCAA--CCCCCTTG-----A-AA--GA--TGT-TG---G-CTGA--TTA-C-CTTA-C-A-A-T-TTTTT--CCT-TTATAAT
gi|127028 : AAAAT---C-T--TA-T-TT-ATTCT-CT-C-G-TTGG---A-A--CACT-A-T--TTTATGTCTG-A-AAA---TTGT-C--A-AAAA-CACC-C--TTTG---AG-TAC-AG--CCCT---------A-AA--GA--TTT-GG---G-CCGAAGTGA-CGC-TA-C-C-CAC-TTTTT--CC--TTATAAT
gi|127029 : AAAAT-A-C-T--TA-T-TT-ATTCT-CTACAG-TTGGCGCA-A--CA-T-A-TATTTCAT---GGGA-AAA---TTGT-CGAA-AAAATCACT-C--TT-G---A--GAC-AG--GCCCCT-G-----ATAA--GA--TTTATG---G-CCGA--TGA-C-C-TA-C-A-C-T-TTTTTTCCC--ATATAAT
gi|127030 : AAAAT-A-C-T--TA-T-TT-ATT-T-CT-C-GGTTGGC--A-AA-CA-T-A-T--TTCAT---TG-A-GAA---TTGTGC--A-AAAATCG-C-C--TTTG---A---AC-AC--CACCCT-GAAAAAA-AA--AA--AAT-TG---G-CTGA--TGA-C-A-TGCC-A-C-T-TTTCT--TT--TTATAAT
gi|127031 : AAAATTA-C-T--TAATATT-ATTCT-CT-C-G-TTG-C--A-A--CA-T-A-T----CAT--------GAA---TTGT-C--A-AAA-TCGCC-C--CT-G---A--CAA-CG--CCCC-T-G-----A-AA--AA--TTT-TG---G-CTGA--TGA-C-G-TC-C-A-C-T-TCTTT------TTATAAT
gi|127032 : AAAT-A-C-T--TA-A-TT-ATTCT-CT-C-G-TTGGC--A-A--CA-TAA-T--TTAAT---TG-A-ATA----TGT-C----AAAATCGCCGC--TTTT---G--CAC-AG---CCCCT-G--------A--GA--TTT-T----G-CCGA--T-A-C-C-TA-C-A-A---TTTTT--CC--TTATAAT
gi|127033 : AAT-AAC-T--TA-T-T--ATTCT-CT-C-G-TTGGCC-A-A--CA-T-A-T--TTCATG--TG-A-AA----TTGT-C--A-AAAATC-CC-C--TTTG---A--GAC-AG---CCCCT-G-------AA--GA--TAT-TG---G--CGA--TGA-C-C-TA-C-A-C---TTTTT--CC--TTATAAT
gi|127034 : -TT-ATTCT-CT-CTG-TTG-C--ACA--CA-T-AAT--TTCATG--TG-A-AAA---TTGT-CA-A-AAAATCA-C-C--TTAGAATA--CAT-GA--CCCCCTAG-----AGAA--GATCTTT-TG---GTCCGA--TGA-C-CTTA-C-A-C-TACCTTT--CCA-TTATAAT
gi|127035 : aattctataatc--CAC-AA--CCCCTT-G-----A-AA--GA--TTT-TG---G-CCAG--TGA-C-C-TA-C-A---T-TTTTT--CC--TTATGAT