lowQualScore : 4 2 2 33 2 2 2 2 2 8 55555 2 2 6 2 2 2 2
lowQualScore : . . . .. . . . . . . ..... . . . . . . .
lowQualScore : 2 1 1 11 1 0 0 0 0 0 00000 0 0 0 0 0 0 1
consensus : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
Reference ( gi|26319 ) : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26320 : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-TGGGA
gi|26322 : AAATTTCAG-GGTGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AC-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26323 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTGGT-CT-GAAG-CGGGA
gi|26324 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26326 : AAATTTCAG-GGCGT-CATGTGATT-CG-TGT-TT-GTC-CA-----A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26327 : AAATTTCAG-GCCGT-CATGCGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----TT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26321 : AAATTTCAG-GGCGT-CATGTGA-T-CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CTGGAAG-TGGGA
gi|26328 : AAATTTCAG-GGTGT-CATGTGATT-CA-TAT-TT-GTC-CAA-TC-A-TAT-----AT-CAA-C-AA-ATTTGT-TT-GAAG-
gi|26329 : AAAATTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAAGTC-A-GAA-----AT-TGA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26331 : AAATGTCAG-GACGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AA-TTTTGT-GT-GAAG-TGG
gi|26330 : AAATTT-AGTGGCGTTCACGTGATTTCG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-CAAA-ATTTGT-CT-GAAG-CGGGA
gi|26332 : AAATTT--A-GGCGT-CATGTGATT-CG-TTT-TTTGTC-CAA-TC-A-TTA-----ATTCAA-C-AA-ATTTGT-CT-GAAG-CGG
gi|26325 : AAATTGTGG-AGTGT-CATGCAATT-TG-TTT-TT-GTC-CAA-TT-A-CAT-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAAGA
gi|26333 : AAATTTCAG-GGCGT-CATGTGATT-TGTTTT-TT-GTCGCCA-TC-GTTAA-----TT-CAATC-AA-ATTTGTCCT-GATG-CGG
gi|26334 : AAATTCCAG-AGTTT-CATTTAATT-CC-CTT-TT-GTA-CGA-TA-A-TAT-----AT-TAA-C-CA-ATTTGT-CT-GGAG-CGGGA
gi|26335 : AAATTTTAG-GGCGT-CATGTGATT-TG-TTT-TT-GTC-AAA-TC-ATTAAGCGGGAT-AAA-T-AC-ATTTAT-CT-
gi|26336 : AATTTCAGCGGCGT-CATGTGA-T-CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CT-GAAGTTGGGA
gi|26337 : AATTTTAG-GGCGT-CATGTGATT-CG-TTTATT-GTC-CAA-TCAA-TTA-----AT---A-C-AA-A-TTGC-CT-GAAG-CGGGA
gi|26338 : TTCCAG-GACGT-CATGTGATT-CA--TT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AATTTTTGT-GT-GAAG-TGGAA
gi|26339 : -GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-A-TTGT-CT-GAAG-CGGGA
Alignments
lowQualScore : 4 2 2 2 2 1 1 1 1 7 44444 1 1 5 1 1 1 2
lowQualScore : . . . . . . . . . . ..... . . . . . . .
lowQualScore : 0 0 0 0 0 9 9 9 9 6 88888 9 9 7 9 9 9 0
consensus : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
Reference ( family-807 ) : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26319 : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26320 : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-TGGGA
gi|26321 : AAATTTCAG-GGCGT-CATGTGA-T-CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CTGGAAG-TGGGA
gi|26322 : AAATTTCAG-GGTGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AC-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26323 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTGGT-CT-GAAG-CGGGA
gi|26324 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26325 : AAATTGTGG-AGTGT-CATGCAATT-TG-TTT-TT-GTC-CAA-TT-A-CAT-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAAGA
gi|26326 : AAATTTCAG-GGCGT-CATGTGATT-CG-TGT-TT-GTC-CA-----A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26327 : AAATTTCAG-GCCGT-CATGCGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----TT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26328 : AAATTTCAG-GGTGT-CATGTGATT-CA-TAT-TT-GTC-CAA-TC-A-TAT-----AT-CAA-C-AA-ATTTGT-TT-GAAG-
gi|26329 : AAAATTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAAGTC-A-GAA-----AT-TGA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26330 : AAATTT-AGTGGCGTTCACGTGATTTCG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-CAAA-ATTTGT-CT-GAAG-CGGGA
gi|26331 : AAATGTCAG-GACGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AA-TTTTGT-GT-GAAG-TGG
gi|26332 : AAATTT--A-GGCGT-CATGTGATT-CG-TTT-TTTGTC-CAA-TC-A-TTA-----ATTCAA-C-AA-ATTTGT-CT-GAAG-CGG
gi|26333 : AAATTTCAG-GGCGT-CATGTGATT-TGTTTT-TT-GTCGCCA-TC-GTTAA-----TT-CAATC-AA-ATTTGTCCT-GATG-CGG
gi|26334 : AAATTCCAG-AGTTT-CATTTAATT-CC-CTT-TT-GTA-CGA-TA-A-TAT-----AT-TAA-C-CA-ATTTGT-CT-GGAG-CGGGA
gi|26335 : AAATTTTAG-GGCGT-CATGTGATT-TG-TTT-TT-GTC-AAA-TC-ATTAAGCGGGAT-AAA-T-AC-ATTTAT-CT-
gi|26336 : AATTTCAGCGGCGT-CATGTGAT--CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CT-GAAGTTGGGA
gi|26337 : AATTTTAG-GGCGT-CATGTGATT-CG-TTTATT-GTC-CAA-TCAA-TTA-----AT---A-C-AA-A-TTGC-CT-GAAG-CGGGA
gi|26338 : TTCCAG-GACGT-CATGTGATT-CA--TT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AATTTTTGT-GT-GAAG-TGGAA
gi|26339 : -GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-A-TTGT-CT-GAAG-CGGGA
Alignments
lowQualScore : 4 2 2 2 2 1 1 1 1 7 44444 1 1 5 1 1 1 2
lowQualScore : . . . . . . . . . . ..... . . . . . . .
lowQualScore : 0 0 0 0 0 9 9 9 9 6 88888 9 9 7 9 9 9 0
consensus : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
Reference ( family-807 ) : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26319 : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26320 : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-TGGGA
gi|26321 : AAATTTCAG-GGCGT-CATGTGA-T-CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CTGGAAG-TGGGA
gi|26322 : AAATTTCAG-GGTGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AC-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26323 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTGGT-CT-GAAG-CGGGA
gi|26324 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26325 : AAATTGTGG-AGTGT-CATGCAATT-TG-TTT-TT-GTC-CAA-TT-A-CAT-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAAGA
gi|26326 : AAATTTCAG-GGCGT-CATGTGATT-CG-TGT-TT-GTC-CA-----A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26327 : AAATTTCAG-GCCGT-CATGCGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----TT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26328 : AAATTTCAG-GGTGT-CATGTGATT-CA-TAT-TT-GTC-CAA-TC-A-TAT-----AT-CAA-C-AA-ATTTGT-TT-GAAG-
gi|26329 : AAAATTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAAGTC-A-GAA-----AT-TGA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26330 : AAATTT-AGTGGCGTTCACGTGATTTCG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-CAAA-ATTTGT-CT-GAAG-CGGGA
gi|26331 : AAATGTCAG-GACGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AA-TTTTGT-GT-GAAG-TGG
gi|26332 : AAATTT--A-GGCGT-CATGTGATT-CG-TTT-TTTGTC-CAA-TC-A-TTA-----ATTCAA-C-AA-ATTTGT-CT-GAAG-CGG
gi|26333 : AAATTTCAG-GGCGT-CATGTGATT-TGTTTT-TT-GTCGCCA-TC-GTTAA-----TT-CAATC-AA-ATTTGTCCT-GATG-CGG
gi|26334 : AAATTCCAG-AGTTT-CATTTAATT-CC-CTT-TT-GTA-CGA-TA-A-TAT-----AT-TAA-C-CA-ATTTGT-CT-GGAG-CGGGA
gi|26335 : AAATTTTAG-GGCGT-CATGTGATT-TG-TTT-TT-GTC-AAA-TC-ATTAAGCGGGAT-AAA-T-AC-ATTTAT-CT-
gi|26336 : AATTTCAGCGGCGT-CATGTGAT--CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CT-GAAGTTGGGA
gi|26337 : AATTTTAG-GGCGT-CATGTGATT-CG-TTTATT-GTC-CAA-TCAA-TTA-----AT---A-C-AA-A-TTGC-CT-GAAG-CGGGA
gi|26338 : TTCCAG-GACGT-CATGTGATT-CA--TT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AATTTTTGT-GT-GAAG-TGGAA
gi|26339 : -GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-A-TTGT-CT-GAAG-CGGGA
blockSeqs : T T T T A T G G A T GCGGG T T A T C G T
blockSeqs : C . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons :
originalCons : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
finalCons : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
Alignments
lowQualScore : 4 2 2 2 2 1 1 1 1 7 44444 1 1 5 1 1 1 2
lowQualScore : . . . . . . . . . . ..... . . . . . . .
lowQualScore : 0 0 0 0 0 9 9 9 9 6 88888 9 9 7 9 9 9 0
consensus : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
Reference ( family-807 ) : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26319 : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26320 : AAATTTCAG-GGCGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-TGGGA
gi|26321 : AAATTTCAG-GGCGT-CATGTGA-T-CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CTGGAAG-TGGGA
gi|26322 : AAATTTCAG-GGTGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-TAA-----AC-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26323 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-ATTGGT-CT-GAAG-CGGGA
gi|26324 : AAATTTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26325 : AAATTGTGG-AGTGT-CATGCAATT-TG-TTT-TT-GTC-CAA-TT-A-CAT-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CAAGA
gi|26326 : AAATTTCAG-GGCGT-CATGTGATT-CG-TGT-TT-GTC-CA-----A-TAA-----AT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26327 : AAATTTCAG-GCCGT-CATGCGATT-CG-TTT-TT-GTC-CAA-TC-A-TTA-----TT-CAA-C-AA-ATTTGT-CT-GAAG-CGGGA
gi|26328 : AAATTTCAG-GGTGT-CATGTGATT-CA-TAT-TT-GTC-CAA-TC-A-TAT-----AT-CAA-C-AA-ATTTGT-TT-GAAG-
gi|26329 : AAAATTCAG-GGCGT-CATGTGATT-CG-TTT-TT-GTC-CAAGTC-A-GAA-----AT-TGA-C-AA-ATTTGT-CT-GAAG-CAGGA
gi|26330 : AAATTT-AGTGGCGTTCACGTGATTTCG-TTT-TT-GTC-CAA-TC-A-TAA-----AT-CAA-CAAA-ATTTGT-CT-GAAG-CGGGA
gi|26331 : AAATGTCAG-GACGT-CATGTGATT-CA-TTT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AA-TTTTGT-GT-GAAG-TGG
gi|26332 : AAATTT--A-GGCGT-CATGTGATT-CG-TTT-TTTGTC-CAA-TC-A-TTA-----ATTCAA-C-AA-ATTTGT-CT-GAAG-CGG
gi|26333 : AAATTTCAG-GGCGT-CATGTGATT-TGTTTT-TT-GTCGCCA-TC-GTTAA-----TT-CAATC-AA-ATTTGTCCT-GATG-CGG
gi|26334 : AAATTCCAG-AGTTT-CATTTAATT-CC-CTT-TT-GTA-CGA-TA-A-TAT-----AT-TAA-C-CA-ATTTGT-CT-GGAG-CGGGA
gi|26335 : AAATTTTAG-GGCGT-CATGTGATT-TG-TTT-TT-GTC-AAA-TC-ATTAAGCGGGAT-AAA-T-AC-ATTTAT-CT-
gi|26336 : AATTTCAGCGGCGT-CATGTGAT--CA-TTT-TT-GTC-CAA-TC-ATTAA-----AT-CAA-CAAA-ATTTGT-CT-GAAGTTGGGA
gi|26337 : AATTTTAG-GGCGT-CATGTGATT-CG-TTTATT-GTC-CAA-TCAA-TTA-----AT---A-C-AA-A-TTGC-CT-GAAG-CGGGA
gi|26338 : TTCCAG-GACGT-CATGTGATT-CA--TT-TT-GTC-CAA-TC-A-CAT-----AT-CAA-C-AATTTTTGT-GT-GAAG-TGGAA
gi|26339 : -GTC-CAA-TC-A-TAA-----AT-CAA-C-AA-A-TTGT-CT-GAAG-CGGGA