lowQualScore : 111111111111111111111 11111 2222222 11 11111 1111 11111 22222222 1 2222222222222222222222222 111111111111 22222222222222
lowQualScore : 2 2 33 0 999999999999999999999 33 1 55555 444 2 1 2 5555 33 1111111 66 2 2 2 888 77 2 444 22 33 2 2 2 444 2 2 2 5 2 2 2 22222 5555 3 3333 666 22222 33 8 66666666 2 33 555 4 2 2 2 2 2 33 2 2 33 2 2 3333333333333333333333333 999 333 55 2 2 4 2 4 2 777 8888888 222222222222 22 2 2 4 44 33333333333333 2 2 33 8 2
lowQualScore : . . .. . ..................... .. . ..... ... . . . .... .. ....... .. . . . ... .. . ... .. .. . . . ... . . . . . . . ..... .... . .... ... ..... .. . ........ . .. ... . . . . . . .. . . .. . . ......................... ... ... .. . . . . . . ... ....... ............ .. . . . .. .............. . . .. . .
lowQualScore : 7 7 77 8 666666666666666666666 77 4 77777 777 7 7 7 1111 77 7777777 33 7 7 7 333 11 7 777 77 77 7 7 7 777 7 7 7 3 7 7 7 33333 7777 9 7777 666 33333 77 0 44444444 7 77 444 7 4 4 4 4 4 22 2 4 22 4 4 5555555555555555555555555 444 999 33 2 2 4 2 4 0 000 5555555 222222222222 88 0 0 0 99 55555555555555 1 1 22 2 9
consensus : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTGGG--T--TTTAAAAT---A-TTGA---AAAT-CATCAAG-G--C-TT--AN------GA-TCGTT-TAC-AA-CTGTCTT---AC-GAA-TCTTTAC---GA-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGAA--T-----TT-C--TT--ACAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--CT---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
Reference ( gi|85732 ) : CAGAAAA-TTCG-TCA--GAAATAAT-A-------A-GATTGGG-CT--TTTAAAAT---T-TTGA---AAAT-CATCAAG-G--C-TT--AT------GA-TCGTT-TAC-AA-CTGTCTT---AC-AAA-TCTTTAC---GT-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGAA--G-----TT-C--TT--GCAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGTCTTTACGA-CCCTTAC--GA-A-T-------------------------G--TT---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGCAT-GCGT
gi|85734 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTGGG-CT--TTTAAAAT---T-TTGA---AAAT-CAT--AG-G--C-TT--AT------GAATCGTT-TAC-AA-CTGTCTT---AC-AAA-TCTTTAC---GT-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TCACAT-AC-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGCA--------TT-C--TT--GCAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--TT---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85733 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTGGG-CT--TTTAAAAT---T-TTGA---AAAT-CAT--AG-G--C-TT--AT------GAATCGTT-TAC-AA-CTGTCTT---AC-AAA-TCTTTAC---GT-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TCACAT-AC-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGCA--------TT-C--TT--GCAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--TT---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85731 : CAGAAAA-TTCA-TCACAGAAATAAC-A-------A-GATTGAG-GT--TTTAAAAT---A-TTGA---AAAT-CATCAAG-G--C-TT--AA------GA-ACGTT-TAC-AA-CTGTCTT---AC-CAA-TCTTTAC---GA-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CCTTGTGA-----T----TTTTTTT---GCAG--TA-----AT--ATA-AAGAA--T-----TT-C--TT--GAAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--CT---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAACGGCAT-GTGT
gi|85730 : CAGAAAA-TACG-TCA--GAAATAAC-A-------A-GATTGGG-GT--TTTAAAAT---A-TTGA---AAAT-CATCAAG-A--C-TT--AA------GA-TCGTT-TAC-AA-CTGTCTT---AC-CAA-TCTTTAC---GA-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CCTTGTGA-----T----TTGTTT----GCAA--TA-----AT--ATA-AAGAA--T-----TC-C--TT--ACAATT-AAGTTTTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--CT---TGC--G-A-T-GATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-GCG--AATATAACAGCAT-GCAT
gi|85735 : CAGAAAA-TTCG-TCA--CAACTAGG-A-------A-GATTGGG-GT--TTTGAAAT---A-TTAA---AAAT-CATGAAG-G--C-TT--TTAA----GA-TCGTT-TAC-AA-CTATCTT---AC-GAA-TCTTTAC---GA-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AC--ATA-AAGAA--T-----TT-C--TT--ACAATC-AATTTCTAA-ATG-ATA-C-A-A--ATGCCTTTGCGA-CCCTTAT--GA-A-T-------------------------G--CT---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------AAATT--C-TTGC-GTGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCAT-GCGT
gi|85737 : CAGAAAA-TTCG-TCA--GAAAT-----------------------T--TTTTAGAT---A-TTGA---AAAT-CATCAAG-G--C-TT--AG------GA-TCGTT-TAC-AA-TTGTCTT---AC-GAA-TCTTTAC---GA-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CCTTATGGTTTTTT----TTTTTT----GCAT--TAGAGTTAT--ATA-AAA-----------T-C--TT--ACAATT-AATTTC-----TG-ATA-C-A-A--ATG-CCTTACGA--CCTTAC--GA-A---------------------------GATTT---TCC--G-G-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85738 : CAGAAA--TTCG-TCA--GAAAT-----------------------T--TTTTAGAT---A-TTGA---AAAT-CATCAAG-G----TT--AG------GA-TCGTT-TAC-AA-TTGTCTT---AC-GAA-TCTTTAC---GA-G--TGTTT-TGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CC-TATGGTTTT-T----TTTTTT----GCAA--TAGCAT-GT--ATA-AAATA--T-----GT-C--TT--ACAATT--ATTTCTGA-CTG-ATA-C-A-A--ATG-CTTTACGA-CCCTTAC--GA-A-T-------------------------G--AT---TGCT-G-G-T-AATT-G-TT----AGT---CTAA-------C------------GAATT--CATTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85745 : CAGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA---------------AAT---T---GA---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---AC-CAA-TCTTTAC---AA-G--TGTTT-AGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-C-TTG-GA-----T----TTTTTTT---GCAA--TA-----AT--ATA-AAGAA--T-----TT-T--CT--ACAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--CT---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------G-ATT--C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85739 : aatgaaaaattttggcgttcgCAGAAAA-TTCG-TCA--GAAAT-----------------------T--TTTTAGAT---A-TTGA---AAAT-CATCAAG-G--C-TT--AG------GA--CGTT-TAC-AA-TTGTCTT---AC-GAA-ACTT-AC---GA-GGTCGTTTATGCG-C-ATTTAA----G-A-AT-TC-CAT-AC-GAA-CCT-ATGG-----T----TTTTTTTTTTGCAAA-TA-----ATGTATA-TAAAA--T-----GT-C--TT--ACAATT-AATTTCTGA-CTG-ATA-C-A-AGAATG-CTTTACGA-CCCTTAC--GA-A-T-------------------------G--AT---TGC--G-G-TTAATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAATAAATACG--AATAAAAGAGCAT-GCGT
gi|85736 : CAGAAAA-TTCGGTCA--CAACTAGT-AGATGAGGA-GGTTGA------TGTGAAAT---A-TTGA---AAAT-TCTCAAG-GGCT-TT--AA------GA-TCGTTGTAC-AA-C-ATCTT---AC-AAA-TCTTTAT---GAAG--CGTTT--GTG-A-CTTTAAT---G-AGATATC-CAT-ACAGAA-CCCTATGA-----T----TTTTTT----CCA---TA-----AT--ATA-AAGAA--T-----TTTC--TT--ACAATC-ATTTTCTAC-ATG-ATA-C-A-A--ATGCCTTTACGA-CTCTCATGGGG-G-T-------------------------GC-TT---TGC--G-A-T-AATT-GTTTGAA-AGT---CTAA-------C------------AAATT--C--TGC-AGGTAGTCAATT--------------T-AGAATAAA-ACG--AATGAAAGAGCAT-GCGT
gi|85740 : CAGAAAA-TTCG-TCA--GAAATAATTA-------A-GATTGGG-TTGTTTTAAAAT---A-TTAATATAGGT-CACCAAGCG--CATT--AA------GA-ACGAT-TAC-AA-CTG-CTT---AC-GAA-TCTTC-C---GA-G--TGGTT-TGCG-AGTTTTAAC---G-A-AT-TC-C-T-AC-GAA-CCTTATGA-----T----TTTTTT----GCAAGTCA-----AT--ATACAAGAA--T-----TT-CAATG--ACAATT-AACTTCCGA-ATG-ATA-C-A-A--A-GCCTTTACGA-CCCTTAC--GAGA-T-------------------------G--CTTAATGCAGG-A-T-AATTCG-ATGCG-AGT---CTAAGGGAATTCCCAAGTTCTAAGGAATT--T-TTGC-GAGTG-TC-T-T--------------T-AGAATAAA-ACG--AATTAA
gi|85741 : CAGAAAAGTTCG-TCA--GAAATAAT-A-------A-GATTGGGTCT--CTTAAAATAAAT-TACA---AAAT--A-CAAG-G--C-CTTAAA------GA-TCG-T-TACTGA-TTGTCTTAA-AC-GAACTCTTTAC---GT-A--TGGTT-TGCGCA-GTTTAACAAGG-A-AT-TC-CATAAC-GAA-C--TATGA-----TACAATTTTTT----GCAA--TG-----AT--ATACAAGAATTGAAGTCTT-C--TT--ACAATT-AACTGCCGACATGAATA-C------ATGCCTTTACGA-CACTTAC--GA-ATT-------------------------G--CT---TGC--GAA-T-AATC-GATTGCT-AGT---CTAA-------C------------GAATTGAC-TTGCGGAGTA-TCAT-T--------------TGAGCATAAA-ACGAAAATAAAGCA-CAT-GCGT
gi|85744 : AGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA----------------AT---A-TTGA---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---AC-CAA-TCTTTAC---AA-G--TGTTT-AGCG-A-CTTTAAT---G-A-AT-TC-CAT-AC-GAA-CCT-GTGA-----T----TTTTTT----TCAA--TA-----AT--ATA-AAGAA--T-----TT-C--TT--ACAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--CT---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAA-T--C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85742 : aatgaaaaattttggcgttcgcaAAAA-TTCG-TCA--GAATAAAT-A-------A-GATTGGG-GT--TTTAAAAT---A-TTGA---AAATTCATCAAA-G--C-TT--AA------GA-TCGTT-TAC-AAACTCTCTTTTTAC-GAA-TTTTAAC---GA-G--TGTTT-TGCG-A-CTTTAAT---GAA-AT-TC-CA--AC-GAA-CCTTGTGA-----T----TTTTTTG---GCAA--TA-----AT--GCATAAGAT--A-----TT-T--TTTAGCGATT-AATTTCTGA-ATG-ATA-C-ATA--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--CT---TCA--A-A-TAAATT-G-TTGAAGAGT---CTAAG------C------------GAATT--C-TTGC--AGTATTCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCATAGCGT
gi|85743 : AAA-TTCG-TCA--GAAATAAC-A-------A-GATGGGG--T--TTTAAAAT---TATTGA---AACT--ATCAAG-G--T-TT--ACATGTAAGA-TCGTT-TAC-AA-CT-TCTT---ACCAAA-TCTTTCCCGAGT-G--T-TTT-TGCG-A-CTTTAAT---G-A-AT-TC--AT-AC-GAAACCTTGTGA-----T----TTTTTT----GCA---TA-----AT--A-A-AAGAA--T-----TT-C--T---ACAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACAAGCCCTTAT--GA-A-T-------------------------G--CT---TGC--G-AGT-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAGTT--------------T-AGAATAAA-ACG--AAT-AAACAGCAT-GCGT
gi|85746 : ATT-A-CTTCTGA-ATG-ATACC-A-A--ATG-CCTTACGA-CCC-TAC--GA-A-A-------------------------G--CT---TGT--G-A-T-AATC-G-TTGC--AGT---CTAA-------CG-----------GAATT--A-TTAC-GA-TG-TCAG----------------T-AGAATAAA-A
gi|85747 : ATT-A-CTTCTGA-ATG-ATA-CCA-A--ATGCCTT-ACCA-CCCT-AC--GA-A-NNNNNNNNNNNNNNNNNNNNNNNNNAG--CT---TGT--G-A-T-AATC-G-TTGCG-AGT---CTAA-------C------------GAATT--A-TTAC-GAGTG-TCAG-T--------------T-AGAATAAA-A
gi|85748 : T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATC--C-TTGC-GAGTA-TTAA-T--------------T-AGAATAAA-ACG--AATAAAAGAG
gi|85749 : A-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------
gi|85750 : -AGT---CTAA-------G------------GAATT--T-TTGC-GAGTG-TCAT-T--------------T-AGAATAAA-ACG--AATAA
Alignments
lowQualScore : 111111111111111111111 1111111111 11111 1111 11111 2222222222222222222222222 111111111111 22222222222222
lowQualScore : 2 2 33 0 777777777777777777777 444 33 0 2 33 2 444 2 0 2 4444 0000000000 55 2 2 2 444 33 33 2 2 2 33 2 2 2 2 444 2 2 2 5 2 2 2 11111 5555 2222 55 11111 33 7 2 22 8888888 33 2 4 2 2 2 2 2 33 1 2 33 2 2 2222222222222222222222222 33 2 333 55 2 2 4 2 4 1 666 8888888 111111111111 22 1 1 3 55 22222222222222 2 2 33 1 2
lowQualScore : . . .. . ..................... ... .. . . .. . ... . . . .... .......... .. . . . ... .. .. . . . .. . . . . ... . . . . . . . ..... .... .... .. ..... .. . . .. ....... .. . . . . . . . .. . . .. . . ......................... .. . ... .. . . . . . . ... ....... ............ .. . . . .. .............. . . .. . .
lowQualScore : 5 5 44 2 777777777777777777777 444 44 8 5 44 5 444 5 9 5 2222 8888888888 33 5 5 5 444 44 88 5 5 5 44 5 5 5 5 444 5 5 5 0 5 5 5 66666 3333 8888 99 66666 44 5 5 66 1111111 44 5 4 2 2 2 2 2 11 9 2 11 2 2 2222222222222222222222222 11 1 777 00 1 1 2 1 2 9 777 1111111 777777777777 66 9 9 8 00 44444444444444 0 0 11 0 7
consensus : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--AA------GA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
Reference ( family-805 ) : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--AN------GA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
gi|85730 : CAGAAAA-TACG-TCA--GAAATAAC-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-A--C-TT--AA------GA-TCGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTGTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------CC--TTA-CAATT-AAGTTTTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-GATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-GCG--AATATAACAGCAT-GCAT
gi|85731 : CAGAAAA-TTCA-TCACAGAAATAAC-A-------A-GATTGAGG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--AA------GA-ACGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTTTTTT---GCAG--TA-----AT--ATA-AAGA-A-TT-------TC--TTG-AAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAACGGCAT-GTGT
gi|85732 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------A-GATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CATCAAG-G--C-TT--AT------GA-TCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGA-A-GT-------TC--TTG-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGTCTTTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGCAT-GCGT
gi|85733 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--AT------GAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85734 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--AT------GAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85735 : CAGAAAA-TTCG-TCA--CAACTAGG-A-------A-GATTG-GGGTT---T--TGAAAT-A--TTA-A---AAAT-CATGAAG-G--C-TTTTAA------GA-TCGTT-TAC-AA-CTATCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AC--ATA-AAGA-A-TT-------TC--TTA-CAATC-AATTTCTAA-ATG-ATA-C-A-A--ATGCCTTTGCGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------AAATT--C-TTGC-GTGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCAT-GCGT
gi|85736 : CAGAAAA-TTCGGTCA--CAACTAGT-AGATGAGGA-GGTTG-A---T---G--TGAAAT-A--TTG-A---AAAT-TCTCAAG-GGCT-TT--AA------GA-TCGTTGTAC-AA-C-ATCTT---A--C-AAA-TCTTTAT-GAAG--CGTTT---GTG-A-CTTTAAT---G-AGATATC-CATA-CAGAA-CCCTATGA-----T----TTTTTT-----CCA--TA-----AT--ATA-AAGA-ATTT-------TC--TTA-CAATC-ATTTTCTAC-ATG-ATA-C-A-A--ATGCCTTTACGA-CTCTCATGGGG-G-T-------------------------G--CTT---TGC--G-A-T-AATT-GTTTGAA-AGT---CTAA-------C------------AAATT--C--TGC-AGGTAGTCAATT--------------T-AGAATAAA-ACG--AATGAAAGAGCAT-GCGT
gi|85737 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--AG------GA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGGTTTTTT----TTTTTT----GCAT--TAGAGTTAT--ATA-AAA-------------TC--TTA-CAATT-AATTTC-----TG-ATA-C-A-A--ATGCC-TTACGA--CCTTAC--GA-A---------------------------GATT-T---TCC--G-G-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85738 : CAGAAA--TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G----TT--AG------GA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CC-TATGGTTTT-T----TTTTTT----GCAA--TAGCAT-GT--ATA-AAAT-A-TG-------TC--TTA-CAATT--ATTTCTGA-CTG-ATA-C-A-A--ATG-CTTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGCT-G-G-T-AATT-G-TT----AGT---CTAA-------C------------GAATT--CATTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85739 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--AG------GA--CGTT-TAC-AA-TTGTCTT---A--C-GAA-ACTT-AC-GA-GGTCGTTTAT-GCG-C-ATTTAA----G-A-AT-TC-CATA-C-GAA-CCT-ATGG-----T----TTTTTTTTTTGCAAA-TA-----ATGTATA-TAAA-A-TG-------TC--TTA-CAATT-AATTTCTGA-CTG-ATA-C-A-AGAATGC-TTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGC--G-G-TTAATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAATAAATACG--AATAAAAGAGCAT-GCGT
gi|85740 : CAGAAAA-TTCG-TCA--GAAATAATTA-------A-GATTG-GG-TTGTTT--TAAAAT-A--TTA-ATATAGGT-CACCAAGCG--CATT--AA------GA-ACGAT-TAC-AA-CTG-CTT---A--C-GAA-TCTTC-C-GA-G--TGGTT-T-GCG-AGTTTTAAC---G-A-AT-TC-C-TA-C-GAA-CCTTATGA-----T----TTTTTT----GCAAGTCA-----AT--ATACAAGA-A-TT-------TCAATGA-CAATT-AACTTCCGA-ATG-ATA-C-A-A--A-GCCTTTACGA-CCCTTAC--GAGA-T-------------------------G--C-TTAATGCAGG-A-T-AATTCG-ATGCG-AGT---CTAAGGGAATTCCCAAGTTCTAAGGAATT--T-TTGC-GAGTG-TC-T-T--------------T-AGAATAAA-ACG--AATTAA
gi|85741 : CAGAAAAGTTCG-TCA--GAAATAAT-A-------A-GATTG-GG-TC---TCTTAAAAT-AAATTACA---AAAT--A-CAAG-G--C-CTTAAA------GA-TCGTT--ACTGA-TTGTCTT---AAAC-GAACTCTTTAC-GT-A--TGGTT-T-GCGCA-GTTTAACAAGG-A-AT-TC-CATAAC-GAA-C--TATGA-----TACAATTTTTT----GCAA--TG-----AT--ATACAAGA-A-TTGAAGTCTTC--TTA-CAATT-AACTGCCGACATGAATA-C------ATGCCTTTACGA-CACTTAC--GA-ATT-------------------------G--C-T---TGC--GAA-T-AATC-GATTGCT-AGT---CTAA-------C------------GAATTGAC-TTGCGGAGTA-TCAT-T--------------TGAGCATAAA-ACGAAAATAAAGCA-CAT-GCGT
gi|85742 : AAAA-TTCG-TCA--GAATAAAT-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAATTCATCAAA-G--C-TT--AA------GA-TCGTT-TAC-AAACTCTCTTTTTA--C-GAA-TTTTAAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---GAA-AT-TC-CA-A-C-GAA-CCTTGTGA-----T----TTTTTTG---GCAA--TA-----AT--GCATAAGATA-TT-------TT--TTAGCGATT-AATTTCTGA-ATG-ATA-C-ATA--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TCA--A-A-TAAATT-G-TTGAAGAGT---CTAAG------C------------GAATT--C-TTGC--AGTATTCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCATAGCGT
gi|85743 : AAA-TTCG-TCA--GAAATAAC-A-------A-GATGG-GG-TT---T--TAAAATTA--TTG-A---AACT--ATCAAG-G--T-TT--ACATGTAAGA-TCGTT-TAC-AA-CT-TCTT---A--CCAAA-TCTTTCCCGA-G--TGTTT-TTGCG-A-CTTTAAT---G-A-AT-TC--ATA-C-GAAACCTTGTGA-----T----TTTTTT----GCA---TA-----AT--A-A-AAGA-A-TT-------TC--T-A-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACAAGCCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-AGT-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAGTT--------------T-AGAATAAA-ACG--AAT-AAACAGCAT-GCGT
gi|85744 : AGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------AT-A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCT-GTGA-----T----TTTTTT----TCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAAT---C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85745 : aatgaaaaattttggcgttcgcaCAGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------A--A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-C-TTG-GA-----T----TTTTTTT---GCAA--TA-----AT--ATA-AAGA-A-TT-------TT--CTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GA-TT--C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85746 : aatgaaaaattttggcgttcgATT-A-CTTCTGA-ATG-ATACC-A-A--ATGCC-TTACGA-CCC-TAC--GA-A-A-------------------------G--C-T---TGT--G-A-T-AATC-G-TTGC--AGT---CTAA-------CG-----------GAATT--A-TTAC-GA-TG-TCAG----------------T-AGAATAAA-A
gi|85747 : ATT-A-CTTCTGA-ATG-ATA-CCA-A--ATGCCTT-ACCA-CCCT-AC--GA-A-NNNNNNNNNNNNNNNNNNNNNNNNNAG--C-T---TGT--G-A-T-AATC-G-TTGCG-AGT---CTAA-------C------------GAATT--A-TTAC-GAGTG-TCAG-T--------------T-AGAATAAA-A
gi|85748 : -T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATC--C-TTGC-GAGTA-TTAA-T--------------T-AGAATAAA-ACG--AATAAAAGAG
gi|85749 : A-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------
gi|85750 : -AGT---CTAA-------G------------GAATT--T-TTGC-GAGTG-TCAT-T--------------T-AGAATAAA-ACG--AATAA
Alignments
lowQualScore : 111111111111111111111 11111 1111 11111 2222222222222222222222222 111111111111 22222222222222
lowQualScore : 2 2 33 0 777777777777777777777 444 33 0 2 33 2 444 2 0 2 4444 9999999999 55 2 2 2 444 33 33 2 2 2 33 2 2 2 2 444 2 2 2 5 2 2 2 11111 5555 2222 55 11111 33 7 2 22 8888888 33 2 4 2 2 2 2 2 33 1 2 33 2 2 2222222222222222222222222 33 2 333 55 2 2 4 2 4 1 666 8888888 111111111111 22 1 1 3 55 22222222222222 2 2 33 1 2
lowQualScore : . . .. . ..................... ... .. . . .. . ... . . . .... .......... .. . . . ... .. .. . . . .. . . . . ... . . . . . . . ..... .... .... .. ..... .. . . .. ....... .. . . . . . . . .. . . .. . . ......................... .. . ... .. . . . . . . ... ....... ............ .. . . . .. .............. . . .. . .
lowQualScore : 5 5 44 2 777777777777777777777 444 44 8 5 44 5 444 5 9 5 2222 8888888888 33 5 5 5 444 44 88 5 5 5 44 5 5 5 5 444 5 5 5 0 5 5 5 66666 3333 8888 99 66666 44 5 5 66 1111111 44 5 4 2 2 2 2 2 11 9 2 11 2 2 2222222222222222222222222 11 1 777 00 1 1 2 1 2 9 777 1111111 777777777777 66 9 9 8 00 44444444444444 0 0 11 0 7
consensus : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
Reference ( family-805 ) : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
gi|85730 : CAGAAAA-TACG-TCA--GAAATAAC-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-A--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTGTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------CC--TTA-CAATT-AAGTTTTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-GATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-GCG--AATATAACAGCAT-GCAT
gi|85731 : CAGAAAA-TTCA-TCACAGAAATAAC-A-------A-GATTGAGG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-ACGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTTTTTT---GCAG--TA-----AT--ATA-AAGA-A-TT-------TC--TTG-AAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAACGGCAT-GTGT
gi|85732 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------A-GATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CATCAAG-G--C-TT--A------TGA-TCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGA-A-GT-------TC--TTG-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGTCTTTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGCAT-GCGT
gi|85733 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--A------TGAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85734 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--A------TGAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85735 : CAGAAAA-TTCG-TCA--CAACTAGG-A-------A-GATTG-GGGTT---T--TGAAAT-A--TTA-A---AAAT-CATGAAG-G--C-TTTTA------AGA-TCGTT-TAC-AA-CTATCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AC--ATA-AAGA-A-TT-------TC--TTA-CAATC-AATTTCTAA-ATG-ATA-C-A-A--ATGCCTTTGCGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------AAATT--C-TTGC-GTGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCAT-GCGT
gi|85736 : CAGAAAA-TTCGGTCA--CAACTAGT-AGATGAGGA-GGTTG-A---T---G--TGAAAT-A--TTG-A---AAAT-TCTCAAG-GGCT-TT--A------AGA-TCGTTGTAC-AA-C-ATCTT---A--C-AAA-TCTTTAT-GAAG--CGTTT---GTG-A-CTTTAAT---G-AGATATC-CATA-CAGAA-CCCTATGA-----T----TTTTTT-----CCA--TA-----AT--ATA-AAGA-ATTT-------TC--TTA-CAATC-ATTTTCTAC-ATG-ATA-C-A-A--ATGCCTTTACGA-CTCTCATGGGG-G-T-------------------------G--CTT---TGC--G-A-T-AATT-GTTTGAA-AGT---CTAA-------C------------AAATT--C--TGC-AGGTAGTCAATT--------------T-AGAATAAA-ACG--AATGAAAGAGCAT-GCGT
gi|85737 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------GGA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGGTTTTTT----TTTTTT----GCAT--TAGAGTTAT--ATA-AAA-------------TC--TTA-CAATT-AATTTC-----TG-ATA-C-A-A--ATGCC-TTACGA--CCTTAC--GA-A---------------------------GATT-T---TCC--G-G-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85738 : CAGAAA--TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G----TT--A------GGA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CC-TATGGTTTT-T----TTTTTT----GCAA--TAGCAT-GT--ATA-AAAT-A-TG-------TC--TTA-CAATT--ATTTCTGA-CTG-ATA-C-A-A--ATG-CTTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGCT-G-G-T-AATT-G-TT----AGT---CTAA-------C------------GAATT--CATTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85739 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------GGA--CGTT-TAC-AA-TTGTCTT---A--C-GAA-ACTT-AC-GA-GGTCGTTTAT-GCG-C-ATTTAA----G-A-AT-TC-CATA-C-GAA-CCT-ATGG-----T----TTTTTTTTTTGCAAA-TA-----ATGTATA-TAAA-A-TG-------TC--TTA-CAATT-AATTTCTGA-CTG-ATA-C-A-AGAATGC-TTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGC--G-G-TTAATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAATAAATACG--AATAAAAGAGCAT-GCGT
gi|85740 : CAGAAAA-TTCG-TCA--GAAATAATTA-------A-GATTG-GG-TTGTTT--TAAAAT-A--TTA-ATATAGGT-CACCAAGCG--CATT--A------AGA-ACGAT-TAC-AA-CTG-CTT---A--C-GAA-TCTTC-C-GA-G--TGGTT-T-GCG-AGTTTTAAC---G-A-AT-TC-C-TA-C-GAA-CCTTATGA-----T----TTTTTT----GCAAGTCA-----AT--ATACAAGA-A-TT-------TCAATGA-CAATT-AACTTCCGA-ATG-ATA-C-A-A--A-GCCTTTACGA-CCCTTAC--GAGA-T-------------------------G--C-TTAATGCAGG-A-T-AATTCG-ATGCG-AGT---CTAAGGGAATTCCCAAGTTCTAAGGAATT--T-TTGC-GAGTG-TC-T-T--------------T-AGAATAAA-ACG--AATTAA
gi|85741 : CAGAAAAGTTCG-TCA--GAAATAAT-A-------A-GATTG-GG-TC---TCTTAAAAT-AAATTACA---AAAT--A-CAAG-G--C-CTTAA------AGA-TCGTT--ACTGA-TTGTCTT---AAAC-GAACTCTTTAC-GT-A--TGGTT-T-GCGCA-GTTTAACAAGG-A-AT-TC-CATAAC-GAA-C--TATGA-----TACAATTTTTT----GCAA--TG-----AT--ATACAAGA-A-TTGAAGTCTTC--TTA-CAATT-AACTGCCGACATGAATA-C------ATGCCTTTACGA-CACTTAC--GA-ATT-------------------------G--C-T---TGC--GAA-T-AATC-GATTGCT-AGT---CTAA-------C------------GAATTGAC-TTGCGGAGTA-TCAT-T--------------TGAGCATAAA-ACGAAAATAAAGCA-CAT-GCGT
gi|85742 : AAAA-TTCG-TCA--GAATAAAT-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAATTCATCAAA-G--C-TT--A------AGA-TCGTT-TAC-AAACTCTCTTTTTA--C-GAA-TTTTAAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---GAA-AT-TC-CA-A-C-GAA-CCTTGTGA-----T----TTTTTTG---GCAA--TA-----AT--GCATAAGATA-TT-------TT--TTAGCGATT-AATTTCTGA-ATG-ATA-C-ATA--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TCA--A-A-TAAATT-G-TTGAAGAGT---CTAAG------C------------GAATT--C-TTGC--AGTATTCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCATAGCGT
gi|85743 : AAA-TTCG-TCA--GAAATAAC-A-------A-GATGG-GG-TT---T--TAAAATTA--TTG-A---AACT--ATCAAG-G--T-TT--ACATGTAAGA-TCGTT-TAC-AA-CT-TCTT---A--CCAAA-TCTTTCCCGA-G--TGTTT-TTGCG-A-CTTTAAT---G-A-AT-TC--ATA-C-GAAACCTTGTGA-----T----TTTTTT----GCA---TA-----AT--A-A-AAGA-A-TT-------TC--T-A-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACAAGCCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-AGT-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAGTT--------------T-AGAATAAA-ACG--AAT-AAACAGCAT-GCGT
gi|85744 : AGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------AT-A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCT-GTGA-----T----TTTTTT----TCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAAT---C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85745 : aatgaaaaattttggcgttcgcaCAGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------A--A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-C-TTG-GA-----T----TTTTTTT---GCAA--TA-----AT--ATA-AAGA-A-TT-------TT--CTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GA-TT--C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85746 : aatgaaaaattttggcgttcgATT-A-CTTCTGA-ATG-ATACC-A-A--ATGCC-TTACGA-CCC-TAC--GA-A-A-------------------------G--C-T---TGT--G-A-T-AATC-G-TTGC--AGT---CTAA-------CG-----------GAATT--A-TTAC-GA-TG-TCAG----------------T-AGAATAAA-A
gi|85747 : ATT-A-CTTCTGA-ATG-ATA-CCA-A--ATGCCTT-ACCA-CCCT-AC--GA-A-NNNNNNNNNNNNNNNNNNNNNNNNNAG--C-T---TGT--G-A-T-AATC-G-TTGCG-AGT---CTAA-------C------------GAATT--A-TTAC-GAGTG-TCAG-T--------------T-AGAATAAA-A
gi|85748 : -T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATC--C-TTGC-GAGTA-TTAA-T--------------T-AGAATAAA-ACG--AATAAAAGAG
gi|85749 : A-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------
gi|85750 : -AGT---CTAA-------G------------GAATT--T-TTGC-GAGTG-TCAT-T--------------T-AGAATAAA-ACG--AATAA
Alignments
lowQualScore : 111111111111111111111 11111 1111 11111 2222222222222222222222222 111111111111 22222222222222
lowQualScore : 2 2 33 0 777777777777777777777 444 33 0 2 33 2 444 2 0 2 4444 9999999999 55 2 2 2 444 33 33 2 2 2 33 2 2 2 2 444 2 2 2 5 2 2 2 11111 5555 2222 55 11111 33 7 2 22 8888888 33 2 4 2 2 2 2 2 33 1 2 33 2 2 2222222222222222222222222 33 2 333 55 2 2 4 2 4 1 666 8888888 111111111111 22 1 1 3 55 22222222222222 2 2 33 1 2
lowQualScore : . . .. . ..................... ... .. . . .. . ... . . . .... .......... .. . . . ... .. .. . . . .. . . . . ... . . . . . . . ..... .... .... .. ..... .. . . .. ....... .. . . . . . . . .. . . .. . . ......................... .. . ... .. . . . . . . ... ....... ............ .. . . . .. .............. . . .. . .
lowQualScore : 5 5 44 2 777777777777777777777 444 44 8 5 44 5 444 5 9 5 2222 8888888888 33 5 5 5 444 44 88 5 5 5 44 5 5 5 5 444 5 5 5 0 5 5 5 66666 3333 8888 99 66666 44 5 5 66 1111111 44 5 4 2 2 2 2 2 11 9 2 11 2 2 2222222222222222222222222 11 1 777 00 1 1 2 1 2 9 777 1111111 777777777777 66 9 9 8 00 44444444444444 0 0 11 0 7
consensus : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
Reference ( family-805 ) : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
gi|85730 : CAGAAAA-TACG-TCA--GAAATAAC-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-A--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTGTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------CC--TTA-CAATT-AAGTTTTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-GATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-GCG--AATATAACAGCAT-GCAT
gi|85731 : CAGAAAA-TTCA-TCACAGAAATAAC-A-------A-GATTGAGG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-ACGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTTTTTT---GCAG--TA-----AT--ATA-AAGA-A-TT-------TC--TTG-AAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAACGGCAT-GTGT
gi|85732 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------A-GATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CATCAAG-G--C-TT--A------TGA-TCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGA-A-GT-------TC--TTG-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGTCTTTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGCAT-GCGT
gi|85733 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--A------TGAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85734 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--A------TGAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85735 : CAGAAAA-TTCG-TCA--CAACTAGG-A-------A-GATTG-GGGTT---T--TGAAAT-A--TTA-A---AAAT-CATGAAG-G--C-TTTTA------AGA-TCGTT-TAC-AA-CTATCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AC--ATA-AAGA-A-TT-------TC--TTA-CAATC-AATTTCTAA-ATG-ATA-C-A-A--ATGCCTTTGCGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------AAATT--C-TTGC-GTGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCAT-GCGT
gi|85736 : CAGAAAA-TTCGGTCA--CAACTAGT-AGATGAGGA-GGTTG-A---T---G--TGAAAT-A--TTG-A---AAAT-TCTCAAG-GGCT-TT--A------AGA-TCGTTGTAC-AA-C-ATCTT---A--C-AAA-TCTTTAT-GAAG--CGTTT---GTG-A-CTTTAAT---G-AGATATC-CATA-CAGAA-CCCTATGA-----T----TTTTTT-----CCA--TA-----AT--ATA-AAGA-ATTT-------TC--TTA-CAATC-ATTTTCTAC-ATG-ATA-C-A-A--ATGCCTTTACGA-CTCTCATGGGG-G-T-------------------------G--CTT---TGC--G-A-T-AATT-GTTTGAA-AGT---CTAA-------C------------AAATT--C--TGC-AGGTAGTCAATT--------------T-AGAATAAA-ACG--AATGAAAGAGCAT-GCGT
gi|85737 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------GGA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGGTTTTTT----TTTTTT----GCAT--TAGAGTTAT--ATA-AAA-------------TC--TTA-CAATT-AATTTC-----TG-ATA-C-A-A--ATGCC-TTACGA--CCTTAC--GA-A---------------------------GATT-T---TCC--G-G-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85738 : CAGAAA--TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G----TT--A------GGA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CC-TATGGTTTT-T----TTTTTT----GCAA--TAGCAT-GT--ATA-AAAT-A-TG-------TC--TTA-CAATT--ATTTCTGA-CTG-ATA-C-A-A--ATG-CTTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGCT-G-G-T-AATT-G-TT----AGT---CTAA-------C------------GAATT--CATTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85739 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------GGA--CGTT-TAC-AA-TTGTCTT---A--C-GAA-ACTT-AC-GA-GGTCGTTTAT-GCG-C-ATTTAA----G-A-AT-TC-CATA-C-GAA-CCT-ATGG-----T----TTTTTTTTTTGCAAA-TA-----ATGTATA-TAAA-A-TG-------TC--TTA-CAATT-AATTTCTGA-CTG-ATA-C-A-AGAATGC-TTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGC--G-G-TTAATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAATAAATACG--AATAAAAGAGCAT-GCGT
gi|85740 : CAGAAAA-TTCG-TCA--GAAATAATTA-------A-GATTG-GG-TTGTTT--TAAAAT-A--TTA-ATATAGGT-CACCAAGCG--CATT--A------AGA-ACGAT-TAC-AA-CTG-CTT---A--C-GAA-TCTTC-C-GA-G--TGGTT-T-GCG-AGTTTTAAC---G-A-AT-TC-C-TA-C-GAA-CCTTATGA-----T----TTTTTT----GCAAGTCA-----AT--ATACAAGA-A-TT-------TCAATGA-CAATT-AACTTCCGA-ATG-ATA-C-A-A--A-GCCTTTACGA-CCCTTAC--GAGA-T-------------------------G--C-TTAATGCAGG-A-T-AATTCG-ATGCG-AGT---CTAAGGGAATTCCCAAGTTCTAAGGAATT--T-TTGC-GAGTG-TC-T-T--------------T-AGAATAAA-ACG--AATTAA
gi|85741 : CAGAAAAGTTCG-TCA--GAAATAAT-A-------A-GATTG-GG-TC---TCTTAAAAT-AAATTACA---AAAT--A-CAAG-G--C-CTTAA------AGA-TCGTT--ACTGA-TTGTCTT---AAAC-GAACTCTTTAC-GT-A--TGGTT-T-GCGCA-GTTTAACAAGG-A-AT-TC-CATAAC-GAA-C--TATGA-----TACAATTTTTT----GCAA--TG-----AT--ATACAAGA-A-TTGAAGTCTTC--TTA-CAATT-AACTGCCGACATGAATA-C------ATGCCTTTACGA-CACTTAC--GA-ATT-------------------------G--C-T---TGC--GAA-T-AATC-GATTGCT-AGT---CTAA-------C------------GAATTGAC-TTGCGGAGTA-TCAT-T--------------TGAGCATAAA-ACGAAAATAAAGCA-CAT-GCGT
gi|85742 : AAAA-TTCG-TCA--GAATAAAT-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAATTCATCAAA-G--C-TT--A------AGA-TCGTT-TAC-AAACTCTCTTTTTA--C-GAA-TTTTAAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---GAA-AT-TC-CA-A-C-GAA-CCTTGTGA-----T----TTTTTTG---GCAA--TA-----AT--GCATAAGATA-TT-------TT--TTAGCGATT-AATTTCTGA-ATG-ATA-C-ATA--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TCA--A-A-TAAATT-G-TTGAAGAGT---CTAAG------C------------GAATT--C-TTGC--AGTATTCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCATAGCGT
gi|85743 : AAA-TTCG-TCA--GAAATAAC-A-------A-GATGG-GG-TT---T--TAAAATTA--TTG-A---AACT--ATCAAG-G--T-TT--ACATGTAAGA-TCGTT-TAC-AA-CT-TCTT---A--CCAAA-TCTTTCCCGA-G--TGTTT-TTGCG-A-CTTTAAT---G-A-AT-TC--ATA-C-GAAACCTTGTGA-----T----TTTTTT----GCA---TA-----AT--A-A-AAGA-A-TT-------TC--T-A-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACAAGCCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-AGT-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAGTT--------------T-AGAATAAA-ACG--AAT-AAACAGCAT-GCGT
gi|85744 : AGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------AT-A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCT-GTGA-----T----TTTTTT----TCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAAT---C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85745 : aatgaaaaattttggcgttcgcaCAGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------A--A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-C-TTG-GA-----T----TTTTTTT---GCAA--TA-----AT--ATA-AAGA-A-TT-------TT--CTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GA-TT--C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85746 : aatgaaaaattttggcgttcgATT-A-CTTCTGA-ATG-ATACC-A-A--ATGCC-TTACGA-CCC-TAC--GA-A-A-------------------------G--C-T---TGT--G-A-T-AATC-G-TTGC--AGT---CTAA-------CG-----------GAATT--A-TTAC-GA-TG-TCAG----------------T-AGAATAAA-A
gi|85747 : ATT-A-CTTCTGA-ATG-ATA-CCA-A--ATGCCTT-ACCA-CCCT-AC--GA-A-NNNNNNNNNNNNNNNNNNNNNNNNNAG--C-T---TGT--G-A-T-AATC-G-TTGCG-AGT---CTAA-------C------------GAATT--A-TTAC-GAGTG-TCAG-T--------------T-AGAATAAA-A
gi|85748 : -T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATC--C-TTGC-GAGTA-TTAA-T--------------T-AGAATAAA-ACG--AATAAAAGAG
gi|85749 : A-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------
gi|85750 : -AGT---CTAA-------G------------GAATT--T-TTGC-GAGTG-TCAT-T--------------T-AGAATAAA-ACG--AATAA
blockSeqs : G G CA TAGATGAGGAGGTTGA GTT CT T AA C TAT T C GCT ACATGTAA AT G T A TTT AA CA C C A GT A T C G AAG A G A A A A A TTTTT ACAA TTTT GT GAGTT GT C T TT GAAGTCT AA G C C A C C T GA T G GG G T NNNNNNNNNNNNNNNNNNNNNNNNA AT T TAA AG A G T C T G ACA GGGAATT CCAAGTTCTAAG GA A G G AT AAATGAGTTAGGCC G T AA C A
blockSeqs : . . . TAACGATTGGGC . . . . . . . . CA TTAA AT . . . . . C . . . . . . . . . . . . A . . . TTTT . T A GCAT . C . T . . . C . . . . . . T . . . . . . . . T . . A . A . ACA G G . . . T GT AAATGAGTTAGGCC . . . T .
blockSeqs : . . . TAACGATTGGGC . . . . . . . . C TAAA A . . . . . A . . . . . . . . . . . . . . . . . . G . . . T . G . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . G . . . . T .
blockSeqs : . . . CAAGATTGAGG . . . . . . . . C AA T . . . . . A . . . . . . . . . . . . . . . . . . T . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . T .
blockSeqs : . . . TAAGATTGGGC . . . . . . . . C AT T . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . G .
blockSeqs : . . . GAAGATTGGGG . . . . . . . . C AT T . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . G .
blockSeqs : . . . TTAAGATTGGG . . . . . . . . C AT T . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . G .
blockSeqs : . . . TAAGATTGGGG . . . . . . . . C AA T . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . G .
blockSeqs : . . . TAAGATTGGG . . . . . . . . C AG A . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . G .
blockSeqs : . . . CAAGATGGGG . . . . . . . . C AG T . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . C .
blockSeqs : . . . CAAGA . . . . . . . . C AG T . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . T . . . . G .
blockSeqs : . . . CAAGA . . . . . . . . T AA T . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . T . . . . C .
blockSeqs : . . . . . . . . . . . . . AA . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . A . . . . C .
blockSeqs : . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . C .
blockSeqs : . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . G . . .
blockSeqs : . . . . . . . . T .
blockSeqCons :
originalCons : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
finalCons : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
Alignments
lowQualScore : 111111111111111111111 11111 1111 11111 2222222222222222222222222 111111111111 22222222222222
lowQualScore : 2 2 33 0 777777777777777777777 444 33 0 2 33 2 444 2 0 2 4444 9999999999 55 2 2 2 444 33 33 2 2 2 33 2 2 2 2 444 2 2 2 5 2 2 2 11111 5555 2222 55 11111 33 7 2 22 8888888 33 2 4 2 2 2 2 2 33 1 2 33 2 2 2222222222222222222222222 33 2 333 55 2 2 4 2 4 1 666 8888888 111111111111 22 1 1 3 55 22222222222222 2 2 33 1 2
lowQualScore : . . .. . ..................... ... .. . . .. . ... . . . .... .......... .. . . . ... .. .. . . . .. . . . . ... . . . . . . . ..... .... .... .. ..... .. . . .. ....... .. . . . . . . . .. . . .. . . ......................... .. . ... .. . . . . . . ... ....... ............ .. . . . .. .............. . . .. . .
lowQualScore : 5 5 44 2 777777777777777777777 444 44 8 5 44 5 444 5 9 5 2222 8888888888 33 5 5 5 444 44 88 5 5 5 44 5 5 5 5 444 5 5 5 0 5 5 5 66666 3333 8888 99 66666 44 5 5 66 1111111 44 5 4 2 2 2 2 2 11 9 2 11 2 2 2222222222222222222222222 11 1 777 00 1 1 2 1 2 9 777 1111111 777777777777 66 9 9 8 00 44444444444444 0 0 11 0 7
consensus : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
Reference ( family-805 ) : CAGAAAA-TTCG-TCA--GAAATAAC-A-------A-GATTG-GG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAANAGCAT-GCGT
gi|85730 : CAGAAAA-TACG-TCA--GAAATAAC-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-A--C-TT--A------AGA-TCGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTGTTT----GCAA--TA-----AT--ATA-AAGA-A-TT-------CC--TTA-CAATT-AAGTTTTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-GATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-GCG--AATATAACAGCAT-GCAT
gi|85731 : CAGAAAA-TTCA-TCACAGAAATAAC-A-------A-GATTGAGG-TT---T--TAAAAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------AGA-ACGTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTGTGA-----T----TTTTTTT---GCAG--TA-----AT--ATA-AAGA-A-TT-------TC--TTG-AAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------T-AGAATAAA-ACG--AATAAAACGGCAT-GTGT
gi|85732 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------A-GATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CATCAAG-G--C-TT--A------TGA-TCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGA-A-GT-------TC--TTG-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGTCTTTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGCAT-GCGT
gi|85733 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--A------TGAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85734 : CAGAAAA-TTCG-TCA--GAAATAAT-A-------ACGATTG-GGCTT---T--TAAAAT-T--TTG-A---AAAT-CAT--AG-G--C-TT--A------TGAATCGTT-TAC-AA-CTGTCTT---A--C-AAA-TCTTTAC-GT-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TCACATA-C-GAA-CCTTATGA-----T----TCTTTT----GCAA--TA-----AT--ATA-AAGC-A--T-------TC--TTG-CAATTCAATTTCTGA-ATG-ATA-C-A-A--ATGTC-TTACGA-CCCTTAC--GA-A-T-------------------------G--T-T---TGC--G-A-T-AATT-G-TTGCA-AGTACATCAA-------C------------GAATT--C-TTGC-G-GTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAATAGTCT-GCGT
gi|85735 : CAGAAAA-TTCG-TCA--CAACTAGG-A-------A-GATTG-GGGTT---T--TGAAAT-A--TTA-A---AAAT-CATGAAG-G--C-TTTTA------AGA-TCGTT-TAC-AA-CTATCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGA-----T----TTTTTT----GCAA--TA-----AC--ATA-AAGA-A-TT-------TC--TTA-CAATC-AATTTCTAA-ATG-ATA-C-A-A--ATGCCTTTGCGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------AAATT--C-TTGC-GTGTA-TCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCAT-GCGT
gi|85736 : CAGAAAA-TTCGGTCA--CAACTAGT-AGATGAGGA-GGTTG-A---T---G--TGAAAT-A--TTG-A---AAAT-TCTCAAG-GGCT-TT--A------AGA-TCGTTGTAC-AA-C-ATCTT---A--C-AAA-TCTTTAT-GAAG--CGTTT---GTG-A-CTTTAAT---G-AGATATC-CATA-CAGAA-CCCTATGA-----T----TTTTTT-----CCA--TA-----AT--ATA-AAGA-ATTT-------TC--TTA-CAATC-ATTTTCTAC-ATG-ATA-C-A-A--ATGCCTTTACGA-CTCTCATGGGG-G-T-------------------------G--CTT---TGC--G-A-T-AATT-GTTTGAA-AGT---CTAA-------C------------AAATT--C--TGC-AGGTAGTCAATT--------------T-AGAATAAA-ACG--AATGAAAGAGCAT-GCGT
gi|85737 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------GGA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCTTATGGTTTTTT----TTTTTT----GCAT--TAGAGTTAT--ATA-AAA-------------TC--TTA-CAATT-AATTTC-----TG-ATA-C-A-A--ATGCC-TTACGA--CCTTAC--GA-A---------------------------GATT-T---TCC--G-G-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85738 : CAGAAA--TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G----TT--A------GGA-TCGTT-TAC-AA-TTGTCTT---A--C-GAA-TCTTTAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CC-TATGGTTTT-T----TTTTTT----GCAA--TAGCAT-GT--ATA-AAAT-A-TG-------TC--TTA-CAATT--ATTTCTGA-CTG-ATA-C-A-A--ATG-CTTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGCT-G-G-T-AATT-G-TT----AGT---CTAA-------C------------GAATT--CATTGC-AAGTA-TCAA-T--------------T-AGAAT-AA-ACG--AATAAAAGAGCAT-GCGT
gi|85739 : CAGAAAA-TTCG-TCA--GAAAT-----------------------TT---T--TTAGAT-A--TTG-A---AAAT-CATCAAG-G--C-TT--A------GGA--CGTT-TAC-AA-TTGTCTT---A--C-GAA-ACTT-AC-GA-GGTCGTTTAT-GCG-C-ATTTAA----G-A-AT-TC-CATA-C-GAA-CCT-ATGG-----T----TTTTTTTTTTGCAAA-TA-----ATGTATA-TAAA-A-TG-------TC--TTA-CAATT-AATTTCTGA-CTG-ATA-C-A-AGAATGC-TTTACGA-CCCTTAC--GA-A-T-------------------------G--A-T---TGC--G-G-TTAATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-AAGTA-TCAA-T--------------T-AGAATAAATACG--AATAAAAGAGCAT-GCGT
gi|85740 : CAGAAAA-TTCG-TCA--GAAATAATTA-------A-GATTG-GG-TTGTTT--TAAAAT-A--TTA-ATATAGGT-CACCAAGCG--CATT--A------AGA-ACGAT-TAC-AA-CTG-CTT---A--C-GAA-TCTTC-C-GA-G--TGGTT-T-GCG-AGTTTTAAC---G-A-AT-TC-C-TA-C-GAA-CCTTATGA-----T----TTTTTT----GCAAGTCA-----AT--ATACAAGA-A-TT-------TCAATGA-CAATT-AACTTCCGA-ATG-ATA-C-A-A--A-GCCTTTACGA-CCCTTAC--GAGA-T-------------------------G--C-TTAATGCAGG-A-T-AATTCG-ATGCG-AGT---CTAAGGGAATTCCCAAGTTCTAAGGAATT--T-TTGC-GAGTG-TC-T-T--------------T-AGAATAAA-ACG--AATTAA
gi|85741 : CAGAAAAGTTCG-TCA--GAAATAAT-A-------A-GATTG-GG-TC---TCTTAAAAT-AAATTACA---AAAT--A-CAAG-G--C-CTTAA------AGA-TCGTT--ACTGA-TTGTCTT---AAAC-GAACTCTTTAC-GT-A--TGGTT-T-GCGCA-GTTTAACAAGG-A-AT-TC-CATAAC-GAA-C--TATGA-----TACAATTTTTT----GCAA--TG-----AT--ATACAAGA-A-TTGAAGTCTTC--TTA-CAATT-AACTGCCGACATGAATA-C------ATGCCTTTACGA-CACTTAC--GA-ATT-------------------------G--C-T---TGC--GAA-T-AATC-GATTGCT-AGT---CTAA-------C------------GAATTGAC-TTGCGGAGTA-TCAT-T--------------TGAGCATAAA-ACGAAAATAAAGCA-CAT-GCGT
gi|85742 : AAAA-TTCG-TCA--GAATAAAT-A-------A-GATTG-GGGTT---T--TAAAAT-A--TTG-A---AAATTCATCAAA-G--C-TT--A------AGA-TCGTT-TAC-AAACTCTCTTTTTA--C-GAA-TTTTAAC-GA-G--TGTTT-T-GCG-A-CTTTAAT---GAA-AT-TC-CA-A-C-GAA-CCTTGTGA-----T----TTTTTTG---GCAA--TA-----AT--GCATAAGATA-TT-------TT--TTAGCGATT-AATTTCTGA-ATG-ATA-C-ATA--ATGCCTTTACGA-CCCTTAC--GA-A-T-------------------------G--C-T---TCA--A-A-TAAATT-G-TTGAAGAGT---CTAAG------C------------GAATT--C-TTGC--AGTATTCAA-T--------------T-AGAATAAA-ACG--AATAAAAGAGCATAGCGT
gi|85743 : AAA-TTCG-TCA--GAAATAAC-A-------A-GATGG-GG-TT---T--TAAAATTA--TTG-A---AACT--ATCAAG-G--T-TT--ACATGTAAGA-TCGTT-TAC-AA-CT-TCTT---A--CCAAA-TCTTTCCCGA-G--TGTTT-TTGCG-A-CTTTAAT---G-A-AT-TC--ATA-C-GAAACCTTGTGA-----T----TTTTTT----GCA---TA-----AT--A-A-AAGA-A-TT-------TC--T-A-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACAAGCCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-AGT-AATT-G-TTGCA-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAGTT--------------T-AGAATAAA-ACG--AAT-AAACAGCAT-GCGT
gi|85744 : AGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------AT-A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-CCT-GTGA-----T----TTTTTT----TCAA--TA-----AT--ATA-AAGA-A-TT-------TC--TTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAAT---C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85745 : aatgaaaaattttggcgttcgcaCAGAAAA-TTCG-CCA--GAAATAAC-A-------A-GA-------------------A--A--TTG-A---AAAT-C-----------------------------GTT-TAC-AA-CTGTCTT---A--C-CAA-TCTTTAC-AA-G--TGTTT-A-GCG-A-CTTTAAT---G-A-AT-TC-CATA-C-GAA-C-TTG-GA-----T----TTTTTTT---GCAA--TA-----AT--ATA-AAGA-A-TT-------TT--CTA-CAATT-AATTTCTGA-ATG-ATA-C-A-A--ATGCCTTTACGA-CCCTTAT--GA-A-T-------------------------G--C-T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GA-TT--C-TTGC-GAGTA-TCAG-TAAATGAGTTAGGCCT-AGAATAAA-ACG--AATAAAACAGCAT-GTGT
gi|85746 : aatgaaaaattttggcgttcgATT-A-CTTCTGA-ATG-ATACC-A-A--ATGCC-TTACGA-CCC-TAC--GA-A-A-------------------------G--C-T---TGT--G-A-T-AATC-G-TTGC--AGT---CTAA-------CG-----------GAATT--A-TTAC-GA-TG-TCAG----------------T-AGAATAAA-A
gi|85747 : ATT-A-CTTCTGA-ATG-ATA-CCA-A--ATGCCTT-ACCA-CCCT-AC--GA-A-NNNNNNNNNNNNNNNNNNNNNNNNNAG--C-T---TGT--G-A-T-AATC-G-TTGCG-AGT---CTAA-------C------------GAATT--A-TTAC-GAGTG-TCAG-T--------------T-AGAATAAA-A
gi|85748 : -T---TGC--G-A-T-AATT-G-TTGCA-AGT---CTAA-------C------------GAATC--C-TTGC-GAGTA-TTAA-T--------------T-AGAATAAA-ACG--AATAAAAGAG
gi|85749 : A-AGT---CTAA-------C------------GAATT--C-TTGC-GAGTA-TCAG-T--------------
gi|85750 : -AGT---CTAA-------G------------GAATT--T-TTGC-GAGTG-TCAT-T--------------T-AGAATAAA-ACG--AATAA