lowQualScore : 1 11111
lowQualScore : 4 2 2 3 7 8 3 3 3 7777 3 33333 2 33 55555 33 5555 2 666 2 7777777 2 2 3 999 5 2 2 6 2 5 66 4
lowQualScore : . . . . . . . . . .... . ..... . .. ..... .. .... . ... . ....... . . . ... . . . . . . .. .
lowQualScore : 0 9 9 1 3 2 3 3 3 4444 3 33333 5 44 99999 22 0000 4 555 4 6666666 4 4 2 333 3 7 7 1 9 5 22 4
consensus : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAA-T-G-AACA-TTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTGT---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTCATAATGTAACGCTGG-TAA-AAT
Reference ( gi|105316 ) : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAA-T-G-A-CA-TTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTGT---T-A-C-GCTTTGATAAAG-TTCATTGTTACGCCATAATGTAACGCTGG-TAA-AAT
gi|105317 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAA-T-G-A-CA-TTGCT-AA--TTACACAA---A-TACAC-----AG-C--TATT------CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTGT---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGCCATAATGTAACGCTGG-TAA-AAT
gi|105319 : GACT-AGTTTCTATCAA-TCTTCAGGAG-ATAA-T-GAA-CA-TTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----C-A--AGTGATA----T-G---AAAA-G-------CTGCCAATG-AATTGT---T-A-C-GCTTTGATAAAGTTTCATTGTTACGTT-CAATGTAACGCTGG-TAA-
gi|105318 : GACTTAGTTTCTA-CAAT-CTTCAGGAGTATAA-T-G-AACA-TTGCTTAG-GTTACACAA---AATACAC-----AGGC--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTG----T-A-C-GCTTTGAT-AAG-TTCATTGTTA-GTCATAATGTAACGCTTA-TAA-
gi|105320 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAA-TAA-A-CA-TTTTT------------A---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATT-T---T-ATC-GTTTT
gi|105322 : GACT-AGTTTCCG-TAATTCTTCAGAAGAACAATT-A-A-TA-TTGCT-TA-ATTATACAT---A-TACAT-----A--C--CACTG-----TAAACAGTAAT-----T-C---AAAA-G-------C-AACTTTGAAATTAC---T-G-T-G-TATGATA----TTCATTAT
gi|105323 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAacttctggataat
gi|105324 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATCA-T-
gi|105325 : GACT-AGTTTCTA-CAAGTCTTCAGGAGTATAA-
gi|105321 : GACT-AGTTTCTA-CAATTCTTCAGGAGTACAG-T-
gi|105326 : T-AGTTTCTG-TTAATCTTCAGGAGTATAA-T-GAA-CA-TTGCT-AG-GTTACACAT---G-TTCAC-----AG-TGATATTTTCTCGTAG--AATGATAATACT-G---ATAA------------CAAATG-AA
gi|105327 : GTTTCTA-CAATTCT-CAGTA-TATAA-T-G-AACA-TTGCT-AG-GT-ACACA------TACAC-----A--C--TATT------CAA--AGTGAGA----T-GAAAAAAA-G-------C-GCCAATA-A----T---T-A-C-GCTTTGAT-AAG-TTCATT-TCACTGCATAATGT-ACGCTGG-TAA-AAT
gi|105328 : TTTCAC-CAATTCTT-AGGAGTATA--T-G-AACA-TTGCC-AGTGTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-GG--AAAA-G-------G-CCCAATG-AATTGT---TTA-C-GCTTTGATAAAG-TTCATTG-TACTTAATAAAGTA
gi|105329 : TCTA-CA-TTCTTCAGGAGT-TAA-T-G-AACA-TTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTTT---TAA-CGGCTTTGA-AAAG-TTCATTATTACGTCATAATGTAACGTTGG-GGA-AA
gi|105330 : TCTA-CAATTCTTCAGGAGTATAA-T-G-AACA-TTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAAA---------------ATG-AATT-T---T-A-C-GCTTGTATAAAG-TTCATTATTACGTCATAATGTAACGTTGG-GAA-AAT
gi|105331 : GTATAA-T-G-A-AAATTGCT-AG-GTCACACAA---A-TACAA-----AG-C--GATCT-----AAA--AGTGATA----TAA---AAAA-G-------C-ACAAATA-A
gi|105332 : A-TCGCT-TA-GTTACACATGTTA-TCAAC-----AA-T--TGTTT-----CTA----TGACA----T-C---AAAT-A-------C-GCCAA----ATTATATTT-G-C-TCTTTAACAAAG-TTCATTGTGACGTCATAATATAAC
gi|105333 : CAC-----GG-T--AATTT-----AAA--AGTGATA----T-A---AAAAAG-------C-G--AATG-AATTGT---T-A-C-GCTTTGATAAAG-TTCATTAATACATCATAATGTAACGTTGGATAATAAT
gi|105334 : AC-----AA-T--TTTTT-----CTA----TGACA----T-C---AAAT-G-------C-GCCAA----ATTATATTT-G-C-GCTTTAACAAAG-TTCATTGTGACGTCATAATATAACGTT
gi|105335 : -----AG-T--TATCA-----TAA--ACAGATA----T-G---AAA--G-------C--CCAATG-AATTGT---T-A---GATTTGATAAAA-TTCATTAATA-GTTCTAATGTAACGTTGG--AA-AAT
gi|105336 : G-C--TGTTT-----CGG--GGTGGTG----T-G---GAGG-GGGAGGGGC-GTCAGTG-AGTTGT---T-G-C-TCTTTGATGAAG-TTCATTGTTGCGTCATAATGT
gi|105337 : ATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTGT---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGTCATAATGTAACGCTTA-TAA-AAT
Alignments
lowQualScore : 11111
lowQualScore : 3 2 3 3 555 3 22222 2 33 55555 33 4444 4 333 22 7777777 2 2 44 888 2 2 2 5 2 1 444 44 4
lowQualScore : . . . . ... . ..... . .. ..... .. .... . ... .. ....... . . .. ... . . . . . . ... .. .
lowQualScore : 6 7 1 1 444 1 55555 4 22 66666 11 7777 4 999 44 2222222 2 2 99 888 5 5 5 1 7 0 777 77 0
consensus : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
Reference ( family-800 ) : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
gi|105316 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGA-CATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGCC---ATAATGTAACGCTGG-TAA-AAT
gi|105317 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGA-CATTGCT-AA--TTACACAA---A-TACAC-----AG-C--TATT------CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGCC---ATAATGTAACGCTGG-TAA-AAT
gi|105318 : GACTTAGTTTCTA-CAAT-CTTCAGGAGTATAATGAACATTGCTTAG-GTTACACAA---AATACAC-----AGGC--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTG-----T-A-C-GCTTTGAT-AAG-TTCATTGTTA-GTC---ATAATGTAACGCTTA-TAA-
gi|105319 : GACT-AGTTTCTATCAAT-CTTCAGGAG-ATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----C-A--AGTGATA----T-G---AAAA-G-------CTGCCAATG-AATTG-T---T-A-C-GCTTTGATAAAGTTTCATTGTTACGTT----CAATGTAACGCTGG-TAA-
gi|105320 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATAAACATTTTT------------A---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATT--T---T-ATC-GTTTT
gi|105321 : GACT-AGTTTCTA-CAATTCTTCAGGAGTACAGT
gi|105322 : GACT-AGTTTCCG-TAATTCTTCAGAAGAACAATTAATATTGCT-TA-ATTATACAT---A-TACAT-----A--C--CACTG-----TAAACAGTAAT-----T-C---AAAA-G-------C-AACTTTGAAATTA-C---T-G-T-G-TATGATA----TTCATTA-TACTTCTGGATAAT
gi|105323 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATA
gi|105324 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATCAT
gi|105325 : GACT-AGTTTCTA-CAAGTCTTCAGGAGTATAA
gi|105326 : T-AGTTTCTG-TTAATCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAT---G-TTCAC-----AG-TGATATTTTCTCGTAG--AATGATAATACT-G---ATAA------------CAAATG-AA
gi|105327 : GTTTCTA-CAATTCT-CAGTA-TATAATGAACATTGCT-AG-G-TACAC-----A-TACAC-----A--C--TA-TT-----CAA--AGTGAGA----T-GAAAAAAA-G-------C-GCCAATA-A-----T---T-A-C-GCTTTGAT-AAG-TTCATT-TCACTGC---ATAATGT-ACGCTGG-TAA-AAT
gi|105328 : TTTCAC-CAATTCTT-AGGAGTATA-TGAACATTGCC-AGTGTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----TGG---AAAA-G-------G-CCCAATG-AATTGTT---T-A-C-GCTTTGATAAAG-TTCATTG-TACTTA---ATAAAGTA
gi|105329 : TCTA-CA-TTCTTCAGGAGT-TAATGAACATTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTT-T---TAA-CGGCTTTGA-AAAG-TTCATTATTACGTC---ATAATGTAACGTTGG-GGA-AA
gi|105330 : TCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAA---------------AATG-AATT--T---T-A-C-GCTTGTATAAAG-TTCATTATTACGTC---ATAATGTAACGTTGG-GAA-AAT
gi|105331 : GTATAATGAAAATTGCT-AG-GTCACACAA---A-TACAA-----AG-C--GATCT-----AAA--AGTGATA----TAA---AAAA-G-------C-ACAAATA-A
gi|105332 : ATCGCT-TA-GTTACACATGTTA-TCAAC-----AA-T--TGTTT-----CTA----TGACA----T-C---AAAT-A-------C-GCCAA----ATTA-TATTT-G-C-TCTTTAACAAAG-TTCATTGTGACGTC---ATAATATAAC
gi|105333 : CAC-----GG-T--AATTT-----AAA--AGTGATA----T-A---AAAAAG-------C-G--AATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTAATACATC---ATAATGTAACGTTGGATAATAAT
gi|105334 : AC-----AA-T--TTTTT-----CTA----TGACA----T-C---AAAT-G-------C-GCCAA----ATTA-TATTT-G-C-GCTTTAACAAAG-TTCATTGTGACGTC---ATAATATAACGTT
gi|105335 : -----AG-T--TATCA-----TAA--ACAGATA----T-G---AAA--G-------C--CCAATG-AATTG-T---T-A---GATTTGATAAAA-TTCATTAATA-GTT---CTAATGTAACGTTGG--AA-AAT
gi|105336 : G-C--TGTTT-----CGG--GGTGGTG----T-G---GAGG-GGGAGGGGC-GTCAGTG-AGTTG-T---T-G-C-TCTTTGATGAAG-TTCATTGTTGCGTC---ATAATGT
gi|105337 : ATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTG-T---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGTC---ATAATGTAACGCTTA-TAA-AAT
Alignments
lowQualScore : 11111
lowQualScore : 3 2 3 3 555 3 22222 2 33 55555 33 4444 4 333 22 7777777 2 2 44 888 2 2 2 5 2 1 444 44 4
lowQualScore : . . . . ... . ..... . .. ..... .. .... . ... .. ....... . . .. ... . . . . . . ... .. .
lowQualScore : 6 7 1 1 444 1 55555 4 22 66666 11 7777 4 999 44 2222222 2 2 99 888 5 5 5 1 7 0 777 77 0
consensus : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
Reference ( family-800 ) : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
gi|105316 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGA-CATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGCC---ATAATGTAACGCTGG-TAA-AAT
gi|105317 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGA-CATTGCT-AA--TTACACAA---A-TACAC-----AG-C--TATT------CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGCC---ATAATGTAACGCTGG-TAA-AAT
gi|105318 : GACTTAGTTTCTA-CAAT-CTTCAGGAGTATAATGAACATTGCTTAG-GTTACACAA---AATACAC-----AGGC--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTG-----T-A-C-GCTTTGAT-AAG-TTCATTGTTA-GTC---ATAATGTAACGCTTA-TAA-
gi|105319 : GACT-AGTTTCTATCAAT-CTTCAGGAG-ATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----C-A--AGTGATA----T-G---AAAA-G-------CTGCCAATG-AATTG-T---T-A-C-GCTTTGATAAAGTTTCATTGTTACGTT----CAATGTAACGCTGG-TAA-
gi|105320 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATAAACATTTTT------------A---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATT--T---T-ATC-GTTTT
gi|105321 : GACT-AGTTTCTA-CAATTCTTCAGGAGTACAGT
gi|105322 : GACT-AGTTTCCG-TAATTCTTCAGAAGAACAATTAATATTGCT-TA-ATTATACAT---A-TACAT-----A--C--CACTG-----TAAACAGTAAT-----T-C---AAAA-G-------C-AACTTTGAAATTA-C---T-G-T-G-TATGATA----TTCATTA-TACTTCTGGATAAT
gi|105323 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATA
gi|105324 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATCAT
gi|105325 : GACT-AGTTTCTA-CAAGTCTTCAGGAGTATAA
gi|105326 : T-AGTTTCTG-TTAATCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAT---G-TTCAC-----AG-TGATATTTTCTCGTAG--AATGATAATACT-G---ATAA------------CAAATG-AA
gi|105327 : GTTTCTA-CAATTCT-CAGTA-TATAATGAACATTGCT-AG-G-TACAC-----A-TACAC-----A--C--TA-TT-----CAA--AGTGAGA----T-GAAAAAAA-G-------C-GCCAATA-A-----T---T-A-C-GCTTTGAT-AAG-TTCATT-TCACTGC---ATAATGT-ACGCTGG-TAA-AAT
gi|105328 : TTTCAC-CAATTCTT-AGGAGTATA-TGAACATTGCC-AGTGTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----TGG---AAAA-G-------G-CCCAATG-AATTGTT---T-A-C-GCTTTGATAAAG-TTCATTG-TACTTA---ATAAAGTA
gi|105329 : TCTA-CA-TTCTTCAGGAGT-TAATGAACATTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTT-T---TAA-CGGCTTTGA-AAAG-TTCATTATTACGTC---ATAATGTAACGTTGG-GGA-AA
gi|105330 : TCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAA---------------AATG-AATT--T---T-A-C-GCTTGTATAAAG-TTCATTATTACGTC---ATAATGTAACGTTGG-GAA-AAT
gi|105331 : GTATAATGAAAATTGCT-AG-GTCACACAA---A-TACAA-----AG-C--GATCT-----AAA--AGTGATA----TAA---AAAA-G-------C-ACAAATA-A
gi|105332 : ATCGCT-TA-GTTACACATGTTA-TCAAC-----AA-T--TGTTT-----CTA----TGACA----T-C---AAAT-A-------C-GCCAA----ATTA-TATTT-G-C-TCTTTAACAAAG-TTCATTGTGACGTC---ATAATATAAC
gi|105333 : CAC-----GG-T--AATTT-----AAA--AGTGATA----T-A---AAAAAG-------C-G--AATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTAATACATC---ATAATGTAACGTTGGATAATAAT
gi|105334 : AC-----AA-T--TTTTT-----CTA----TGACA----T-C---AAAT-G-------C-GCCAA----ATTA-TATTT-G-C-GCTTTAACAAAG-TTCATTGTGACGTC---ATAATATAACGTT
gi|105335 : -----AG-T--TATCA-----TAA--ACAGATA----T-G---AAA--G-------C--CCAATG-AATTG-T---T-A---GATTTGATAAAA-TTCATTAATA-GTT---CTAATGTAACGTTGG--AA-AAT
gi|105336 : G-C--TGTTT-----CGG--GGTGGTG----T-G---GAGG-GGGAGGGGC-GTCAGTG-AGTTG-T---T-G-C-TCTTTGATGAAG-TTCATTGTTGCGTC---ATAATGT
gi|105337 : ATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTG-T---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGTC---ATAATGTAACGCTTA-TAA-AAT
blockSeqs : T T T T GTT A TTGCA G GA TCTCG AC ATAC G AAA AA GGAGGGG T A GT ATT A T G A T T TGG AT T
blockSeqs : . . . . . . TTGCA . . . . . A . A . . . G ATT . . . A . T . T .
blockSeqs : . . . . . . . . . . . . . . A . . . G . . . . A . T . T .
blockSeqs : . . . . . . . . . . . . . . A . . . G . . . . A . T . T .
blockSeqs : . . . . . . . . . . . . . . A . . . A . . . . A . T . T .
blockSeqs : . . . . . . . . . . . . . . A . . . T . . . . A . T . G .
blockSeqs : . . . . . . . . . . . . . . A . . . A . . . . A . T . G .
blockSeqs : . . . . . . . . . . . . . . A . . . G . . . . A . A . T .
blockSeqs : . . . . . . . . . . . . . . A . . . A . . . . A . T . . .
blockSeqs : . . . . . . . . . . . . . . A . . . G . . . . G . A .
blockSeqs : . . . . . . . . . . . . . A . . . G . . . . . . T .
blockSeqs : . . . . . . . . . . . . . T . . . G . . . . . . T .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
finalCons : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
Alignments
lowQualScore : 11111
lowQualScore : 3 2 3 3 555 3 22222 2 33 55555 33 4444 4 333 22 7777777 2 2 44 888 2 2 2 5 2 1 444 44 4
lowQualScore : . . . . ... . ..... . .. ..... .. .... . ... .. ....... . . .. ... . . . . . . ... .. .
lowQualScore : 6 7 1 1 444 1 55555 4 22 66666 11 7777 4 999 44 2222222 2 2 99 888 5 5 5 1 7 0 777 77 0
consensus : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
Reference ( family-800 ) : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGTC---ATAATGTAACGCTGG-TAA-AAT
gi|105316 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGA-CATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTGTTACGCC---ATAATGTAACGCTGG-TAA-AAT
gi|105317 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATGA-CATTGCT-AA--TTACACAA---A-TACAC-----AG-C--TATT------CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTG-T---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGCC---ATAATGTAACGCTGG-TAA-AAT
gi|105318 : GACTTAGTTTCTA-CAAT-CTTCAGGAGTATAATGAACATTGCTTAG-GTTACACAA---AATACAC-----AGGC--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTG-----T-A-C-GCTTTGAT-AAG-TTCATTGTTA-GTC---ATAATGTAACGCTTA-TAA-
gi|105319 : GACT-AGTTTCTATCAAT-CTTCAGGAG-ATAATGAACATTGCT-AG-GTTACACAA---A-TACAC-----AG-C--TATTT-----C-A--AGTGATA----T-G---AAAA-G-------CTGCCAATG-AATTG-T---T-A-C-GCTTTGATAAAGTTTCATTGTTACGTT----CAATGTAACGCTGG-TAA-
gi|105320 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATAATAAACATTTTT------------A---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATT--T---T-ATC-GTTTT
gi|105321 : GACT-AGTTTCTA-CAATTCTTCAGGAGTACAGT
gi|105322 : GACT-AGTTTCCG-TAATTCTTCAGAAGAACAATTAATATTGCT-TA-ATTATACAT---A-TACAT-----A--C--CACTG-----TAAACAGTAAT-----T-C---AAAA-G-------C-AACTTTGAAATTA-C---T-G-T-G-TATGATA----TTCATTA-TACTTCTGGATAAT
gi|105323 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATA
gi|105324 : GACT-AGTTTCTA-CAATTCTTCAGGAGTATCAT
gi|105325 : GACT-AGTTTCTA-CAAGTCTTCAGGAGTATAA
gi|105326 : T-AGTTTCTG-TTAATCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAT---G-TTCAC-----AG-TGATATTTTCTCGTAG--AATGATAATACT-G---ATAA------------CAAATG-AA
gi|105327 : GTTTCTA-CAATTCT-CAGTA-TATAATGAACATTGCT-AG-G-TACAC-----A-TACAC-----A--C--TA-TT-----CAA--AGTGAGA----T-GAAAAAAA-G-------C-GCCAATA-A-----T---T-A-C-GCTTTGAT-AAG-TTCATT-TCACTGC---ATAATGT-ACGCTGG-TAA-AAT
gi|105328 : TTTCAC-CAATTCTT-AGGAGTATA-TGAACATTGCC-AGTGTTACACAA---A-TACAC-----AG-C--TATTT-----CAA--AGTGATA----TGG---AAAA-G-------G-CCCAATG-AATTGTT---T-A-C-GCTTTGATAAAG-TTCATTG-TACTTA---ATAAAGTA
gi|105329 : TCTA-CA-TTCTTCAGGAGT-TAATGAACATTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AATTT-T---TAA-CGGCTTTGA-AAAG-TTCATTATTACGTC---ATAATGTAACGTTGG-GGA-AA
gi|105330 : TCTA-CAATTCTTCAGGAGTATAATGAACATTGCT-AG-GTTACACAA---A-TACACTTGCAAG-C--TATTT-----CAA--AGTGATA----T-G---AAA---------------AATG-AATT--T---T-A-C-GCTTGTATAAAG-TTCATTATTACGTC---ATAATGTAACGTTGG-GAA-AAT
gi|105331 : GTATAATGAAAATTGCT-AG-GTCACACAA---A-TACAA-----AG-C--GATCT-----AAA--AGTGATA----TAA---AAAA-G-------C-ACAAATA-A
gi|105332 : ATCGCT-TA-GTTACACATGTTA-TCAAC-----AA-T--TGTTT-----CTA----TGACA----T-C---AAAT-A-------C-GCCAA----ATTA-TATTT-G-C-TCTTTAACAAAG-TTCATTGTGACGTC---ATAATATAAC
gi|105333 : CAC-----GG-T--AATTT-----AAA--AGTGATA----T-A---AAAAAG-------C-G--AATG-AATTG-T---T-A-C-GCTTTGATAAAG-TTCATTAATACATC---ATAATGTAACGTTGGATAATAAT
gi|105334 : AC-----AA-T--TTTTT-----CTA----TGACA----T-C---AAAT-G-------C-GCCAA----ATTA-TATTT-G-C-GCTTTAACAAAG-TTCATTGTGACGTC---ATAATATAACGTT
gi|105335 : -----AG-T--TATCA-----TAA--ACAGATA----T-G---AAA--G-------C--CCAATG-AATTG-T---T-A---GATTTGATAAAA-TTCATTAATA-GTT---CTAATGTAACGTTGG--AA-AAT
gi|105336 : G-C--TGTTT-----CGG--GGTGGTG----T-G---GAGG-GGGAGGGGC-GTCAGTG-AGTTG-T---T-G-C-TCTTTGATGAAG-TTCATTGTTGCGTC---ATAATGT
gi|105337 : ATTT-----CAA--AGTGATA----T-G---AAAA-G-------C-GCCAATG-AAGTG-T---T-A-C-GCTTTGAT-AAG-TTCATTGTTACGTC---ATAATGTAACGCTTA-TAA-AAT