lowQualScore : 1111
lowQualScore : 2 2 2 55 1 3 777 1 2222 1 22 1 1
lowQualScore : . . . .. . . ... . .... . .. . .
lowQualScore : 2 1 1 99 9 8 111 9 1111 9 66 9 9
consensus : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
Reference ( gi|54146 ) : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54147 : TAACGA-GTACTC-GA-GTATGAAAT-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54149 : TAACGA-GTAATC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGCGTACTCG
gi|54143 : TAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54150 : tgTAGCGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACT-GA--G-CGATAG-TCGAGTACTCG
gi|54148 : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GC----TACGACC-GA--C-CGATAG-TTGAATACTCG
gi|54144 : TAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC--G----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54152 : tgTAACGA-GTACTC-GA-GTATGAAAA-AT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATA--TCTAGTACTC
gi|54155 : TAGCGAAGTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACCTGA--A-CGATAG-TCGAGTACTCG
gi|54151 : TAACGA-GCACTC-GA-CTAAGAAAA-AT-TTAGTTG-A---TGATC-AT----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54153 : TAACGA-ATACTC-GA-CTAAGAAAA-AT-TTAGTCG-A---TGACC-GA----TACGACC-AA--G-CGATAG-TCGAGTAATCG
gi|54158 : TAACGA-GTGCTC-GA-CAATGCAAA-AT-TTAGTCT-A---TGATC-GG----TACGATC-GA--G-CGATAG-TCGAGTTCTCG
gi|54156 : TAATGA-GTACTC-GA-CTAAGAAAA-AT-TAAGTCG-A---TGATC-GG----AAAGACC-GA--A-CGATAG-TCGAGTACTCG
gi|54159 : TAACGA-GTACTCGGA-GTATGAACA-TTGTTAGTCGAA---TGATC-GA----TACGA-C-GA--G-CGATAG-TCGAGTCCT
gi|54154 : TAACGA-GTACTC-GA-CTAAGAAAA-AA-TTAGTAG-A---TGATC-GA----TTCGAGC-GA--G-TGATAG-TCGAGTACTCG
gi|54157 : TAACGA-GTACTC-GAAGTATGAAAA--T-TTAGTCGTA---TGATC-GT----AACGACC-GACGG-CGATAG--CGAGTAC
gi|54145 : TAACGA-GTACTG-AG-GTTTGAAAAATT-TTAATCG-A---TCATCCGG----TAC-ACC-GA--G-CGATAG-TCGATAACTCG
gi|54160 : tgAACGA-GTACTC-GA-GTATGGAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--GCCGATAGATCGAGAACTCG
gi|54161 : A-GTACTC-GA-GTATGAAA---T-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTA-TCG
gi|54162 : TACTC-G------GATAG-CT-TTAGTCG-AAGTTACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54164 : -TTAGTCG-AG--TACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54163 : tactcggatagc-TTAGTCG-AG--TACTC-GGAGGTTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
Alignments
lowQualScore : 1111
lowQualScore : 2 2 2 55 1 3 666 1 1111 1 22 1 1
lowQualScore : . . . .. . . ... . .... . .. . .
lowQualScore : 1 0 0 22 8 6 888 8 6666 8 55 8 8
consensus : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
Reference ( family-794 ) : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54143 : TAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54144 : tgTAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC--G----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54145 : tgTAACGA-GTACTG-AG-GTTTGAAAAATT-TTAATCG-A---TCATCCGG----TAC-ACC-GA--G-CGATAG-TCGATAACTCG
gi|54146 : tgTAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54147 : TAACGA-GTACTC-GA-GTATGAAAT-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54148 : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GC----TACGACC-GA--C-CGATAG-TTGAATACTCG
gi|54149 : TAACGA-GTAATC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGCGTACTCG
gi|54150 : TAGCGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACT-GA--G-CGATAG-TCGAGTACTCG
gi|54151 : TAACGA-GCACTC-GA-CTAAGAAAA-AT-TTAGTTG-A---TGATC-AT----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54152 : TAACGA-GTACTC-GA-GTATGAAAA-AT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATA--TCTAGTACTC
gi|54153 : TAACGA-ATACTC-GA-CTAAGAAAA-AT-TTAGTCG-A---TGACC-GA----TACGACC-AA--G-CGATAG-TCGAGTAATCG
gi|54154 : TAACGA-GTACTC-GA-CTAAGAAAA-AA-TTAGTAG-A---TGATC-GA----TTCGAGC-GA--G-TGATAG-TCGAGTACTCG
gi|54155 : TAGCGAAGTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACCTGA--A-CGATAG-TCGAGTACTCG
gi|54156 : TAATGA-GTACTC-GA-CTAAGAAAA-AT-TAAGTCG-A---TGATC-GG----AAAGACC-GA--A-CGATAG-TCGAGTACTCG
gi|54157 : TAACGA-GTACTC-GAAGTATGAAAA--T-TTAGTCGTA---TGATC-GT----AACGACC-GACGG-CGATAG--CGAGTAC
gi|54158 : TAACGA-GTGCTC-GA-CAATGCAAA-AT-TTAGTCT-A---TGATC-GG----TACGATC-GA--G-CGATAG-TCGAGTTCTCG
gi|54159 : TAACGA-GTACTCGGA-GTATGAACA-TTGTTAGTCGAA---TGATC-GA----TACGA-C-GA--G-CGATAG-TCGAGTCCT
gi|54160 : AACGA-GTACTC-GA-GTATGGAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--GCCGATAGATCGAGAACTCG
gi|54161 : A-GTACTC-GA-GTATGAAA---T-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTA-TCG
gi|54162 : TACTC-G------GATAG-CT-TTAGTCG-AAGTTACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54163 : -TTAGTCG-AG--TACTC-GGAGGTTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54164 : tactcggatagc-TTAGTCG-AG--TACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
Alignments
lowQualScore : 1111
lowQualScore : 2 2 2 55 1 3 666 1 1111 1 22 1 1
lowQualScore : . . . .. . . ... . .... . .. . .
lowQualScore : 1 0 0 22 8 6 888 8 6666 8 55 8 8
consensus : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
Reference ( family-794 ) : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54143 : TAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54144 : tgTAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC--G----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54145 : tgTAACGA-GTACTG-AG-GTTTGAAAAATT-TTAATCG-A---TCATCCGG----TAC-ACC-GA--G-CGATAG-TCGATAACTCG
gi|54146 : tgTAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54147 : TAACGA-GTACTC-GA-GTATGAAAT-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54148 : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GC----TACGACC-GA--C-CGATAG-TTGAATACTCG
gi|54149 : TAACGA-GTAATC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGCGTACTCG
gi|54150 : TAGCGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACT-GA--G-CGATAG-TCGAGTACTCG
gi|54151 : TAACGA-GCACTC-GA-CTAAGAAAA-AT-TTAGTTG-A---TGATC-AT----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54152 : TAACGA-GTACTC-GA-GTATGAAAA-AT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATA--TCTAGTACTC
gi|54153 : TAACGA-ATACTC-GA-CTAAGAAAA-AT-TTAGTCG-A---TGACC-GA----TACGACC-AA--G-CGATAG-TCGAGTAATCG
gi|54154 : TAACGA-GTACTC-GA-CTAAGAAAA-AA-TTAGTAG-A---TGATC-GA----TTCGAGC-GA--G-TGATAG-TCGAGTACTCG
gi|54155 : TAGCGAAGTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACCTGA--A-CGATAG-TCGAGTACTCG
gi|54156 : TAATGA-GTACTC-GA-CTAAGAAAA-AT-TAAGTCG-A---TGATC-GG----AAAGACC-GA--A-CGATAG-TCGAGTACTCG
gi|54157 : TAACGA-GTACTC-GAAGTATGAAAA--T-TTAGTCGTA---TGATC-GT----AACGACC-GACGG-CGATAG--CGAGTAC
gi|54158 : TAACGA-GTGCTC-GA-CAATGCAAA-AT-TTAGTCT-A---TGATC-GG----TACGATC-GA--G-CGATAG-TCGAGTTCTCG
gi|54159 : TAACGA-GTACTCGGA-GTATGAACA-TTGTTAGTCGAA---TGATC-GA----TACGA-C-GA--G-CGATAG-TCGAGTCCT
gi|54160 : AACGA-GTACTC-GA-GTATGGAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--GCCGATAGATCGAGAACTCG
gi|54161 : A-GTACTC-GA-GTATGAAA---T-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTA-TCG
gi|54162 : TACTC-G------GATAG-CT-TTAGTCG-AAGTTACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54163 : -TTAGTCG-AG--TACTC-GGAGGTTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54164 : tactcggatagc-TTAGTCG-AG--TACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
blockSeqs : A G A AT G T AGT C AGGC T CG C A
blockSeqs : . . . T . A G . AGGT . . . .
blockSeqs : . . . T . . G . AGGC . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . . T . . . . . . . . .
blockSeqs : . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
finalCons : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
Alignments
lowQualScore : 1111
lowQualScore : 2 2 2 55 1 3 666 1 1111 1 22 1 1
lowQualScore : . . . .. . . ... . .... . .. . .
lowQualScore : 1 0 0 22 8 6 888 8 6666 8 55 8 8
consensus : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
Reference ( family-794 ) : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54143 : TAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54144 : tgTAACGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC--G----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54145 : tgTAACGA-GTACTG-AG-GTTTGAAAAATT-TTAATCG-A---TCATCCGG----TAC-ACC-GA--G-CGATAG-TCGATAACTCG
gi|54146 : tgTAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54147 : TAACGA-GTACTC-GA-GTATGAAAT-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54148 : TAACGA-GTACTC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GC----TACGACC-GA--C-CGATAG-TTGAATACTCG
gi|54149 : TAACGA-GTAATC-GA-GTATGAAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGCGTACTCG
gi|54150 : TAGCGA-GTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACT-GA--G-CGATAG-TCGAGTACTCG
gi|54151 : TAACGA-GCACTC-GA-CTAAGAAAA-AT-TTAGTTG-A---TGATC-AT----TACGACC-GA--G-CGATAG-TCGAGTACTCG
gi|54152 : TAACGA-GTACTC-GA-GTATGAAAA-AT-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATA--TCTAGTACTC
gi|54153 : TAACGA-ATACTC-GA-CTAAGAAAA-AT-TTAGTCG-A---TGACC-GA----TACGACC-AA--G-CGATAG-TCGAGTAATCG
gi|54154 : TAACGA-GTACTC-GA-CTAAGAAAA-AA-TTAGTAG-A---TGATC-GA----TTCGAGC-GA--G-TGATAG-TCGAGTACTCG
gi|54155 : TAGCGAAGTACTC-GA-GTTTGAAAA-TT-TTAGTCG-A---TCATC-GG----TACGACCTGA--A-CGATAG-TCGAGTACTCG
gi|54156 : TAATGA-GTACTC-GA-CTAAGAAAA-AT-TAAGTCG-A---TGATC-GG----AAAGACC-GA--A-CGATAG-TCGAGTACTCG
gi|54157 : TAACGA-GTACTC-GAAGTATGAAAA--T-TTAGTCGTA---TGATC-GT----AACGACC-GACGG-CGATAG--CGAGTAC
gi|54158 : TAACGA-GTGCTC-GA-CAATGCAAA-AT-TTAGTCT-A---TGATC-GG----TACGATC-GA--G-CGATAG-TCGAGTTCTCG
gi|54159 : TAACGA-GTACTCGGA-GTATGAACA-TTGTTAGTCGAA---TGATC-GA----TACGA-C-GA--G-CGATAG-TCGAGTCCT
gi|54160 : AACGA-GTACTC-GA-GTATGGAAA-TT-TTAGTCG-A---TGATC-GG----TACGACC-GA--GCCGATAGATCGAGAACTCG
gi|54161 : A-GTACTC-GA-GTATGAAA---T-TTAGTCG-A---TGATC-GG----TACGACC-GA--G-CGATAG-TCGAGTA-TCG
gi|54162 : TACTC-G------GATAG-CT-TTAGTCG-AAGTTACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54163 : -TTAGTCG-AG--TACTC-GGAGGTTTTAGTC-GA--G-CGATAG-TCGAGTACTCG
gi|54164 : tactcggatagc-TTAGTCG-AG--TACTC-GGAGGCTTTAGTC-GA--G-CGATAG-TCGAGTACTCG