lowQualScore : 11 1111 33 11111111111 2222
lowQualScore : 5 66 8 55 77 1 1 1 4444 00 22 1 1 77 22222222222 1 1 22 1 3 0000 1 3 1 5 1 5
lowQualScore : . .. . .. .. . . . .... .. .. . . .. ........... . . .. . . .... . . . . . .
lowQualScore : 0 11 9 66 33 9 9 9 2222 00 55 8 8 77 77777777777 8 8 55 8 6 9999 8 6 8 0 4 7
consensus : AAATTTT-TCT--A-GT-GTAAAA--GTTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTN-TGA--NTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( gi|129963 ) : AAATTTT-TCT--A-GT-GTAAAA--GTCT-GGAC-AAGTAA--T-TTTTT--T--T-CGGAC-AAGTGAAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129966 : AAATTTT-TCT--A-GT-GTAAAA--GTCT-GGAC-AAGTAA--TATTTTT--T--T-TGGAC-AAGTGAAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129964 : AATTTTT-TCT--A-GT-GTAAAAA-GTCT-GGAC-AAGCAA--T-TTTTT--T--T-CGGAC-AAGTGGAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965 : AATTTTT-TCT--AAGT-GTAAAAA-GTCT-GGAC-AAGCAA--T-TTTTT--T--TTCGGAC-AAGTGGAA-TTA-TCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129968 : AAATTTT-TCT--A-GTTGTAAAA--GTCT--GACAAAGTAAT-T-TTTTT--T--T-CGGACAAAGTGAAA-TTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129967 : AATTTT-TCCTAA-GT-GTAAAA--GTCT-GGAC-AAGTAA--T-TTTTT--T--T-CGGAC-AAGTGAAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129969 : AATTTTATCT--A-GT-GTAAAG-----C-GGAC-AA-TAA--TATTTTT--T--T-CGGAC-AAGTGAAA-TTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129972 : TTTT-TCT--ACAT-TTAAAATAATTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAG-AAGTGAAA-GTT-TTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973 : TT-TTT--A-GT--TAAAA--GTCT-GGA---AGTAA--T-ATTTT--T--T-TGGAC-ACGTG-AA-TTC-TAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129970 : --A-GT-CTAAAATTGTTTTGGAC-AGGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGAG-TTA-T-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971 : atttcttttagtacAAAA--ATTT-GGAC-AAGTAA--G-TGTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129974 : ttttttatacagttaaaAAAA--CTTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAAGTTG-GAG--T--TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975 : TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976 : TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129979 : TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978 : TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129977 : TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980 : TTT-GGAC-AAGTAA--G-TTTTT--CAAT-CGGAC-AAGTGAAAGTTA-GAG--T--TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981 : TTT-GGAC-AA-TAA--G-TTTTTCAT--T-CAGAC-AAGTGAAA-GTT-TGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129983 : TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CAGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129982 : TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CAGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984 : TTT-GGAC-AAGCAAAAT-TTGTG--T--T-CGGAC-AAGTAAA---TA-TCA--AAGTC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G
gi|129984 : --T--T-AGGAC-AAGTGACT-TTG-ATA--TT--T-ACT-TGT--CC-G-A----AC-ACA-AAT-
Alignments
lowQualScore : 11 2222
lowQualScore : 4 55 8 4 3 22 1 1 3 88 1 22 1 1 77777 1 1 22 1 3 0000 1 3 1 4 5
lowQualScore : . .. . . . .. . . . .. . .. . . ..... . . .. . . .... . . . . .
lowQualScore : 4 55 0 0 3 55 8 8 6 55 8 88 0 0 22222 8 8 55 8 6 9999 8 6 8 4 0
consensus : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 ) : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-NTGANT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964 : AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965 : AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCATT---ATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967 : AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968 : AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATT-ATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969 : AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCATT---TTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970 : --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---TAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971 : atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972 : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTAGT----TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973 : TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAATT---ATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974 : -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGAGT----TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980 : TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGAGT----TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981 : TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGAGT---ATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984 : TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGT--AAAT-ATCAAA---GTC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G
Alignments
lowQualScore : 11 2222
lowQualScore : 4 55 8 4 3 22 1 1 3 88 1 3 0 22 44 1 1 22 1 3 0000 1 3 1 4 5
lowQualScore : . .. . . . .. . . . .. . . . .. .. . . .. . . .... . . . . .
lowQualScore : 4 55 0 0 3 55 8 8 6 55 8 6 5 55 55 8 8 55 8 6 9999 8 6 8 4 0
consensus : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 ) : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964 : AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965 : AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967 : AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968 : AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969 : AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970 : --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTTAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971 : atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972 : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973 : TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974 : -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGA--GT-TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980 : TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGA--GT-TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981 : TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984 : TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGTAAATAT-CAAA--G--TC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G
Alignments
lowQualScore : 11 2222
lowQualScore : 4 55 8 4 3 22 1 1 3 88 1 3 0 22 44 1 1 22 1 3 0000 1 3 1 4 5
lowQualScore : . .. . . . .. . . . .. . . . .. .. . . .. . . .... . . . . .
lowQualScore : 4 55 0 0 3 55 8 8 6 55 8 6 5 55 55 8 8 55 8 6 9999 8 6 8 4 0
consensus : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 ) : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964 : AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965 : AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967 : AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968 : AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969 : AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970 : --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTTAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971 : atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972 : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973 : TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974 : -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGA--GT-TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980 : TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGA--GT-TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981 : TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984 : TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGTAAATAT-CAAA--G--TC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G
blockSeqs : A TA A T A TT T A T CA A A TC AT T G GG A A TTCC G C A G C
blockSeqs : . . C . . TA . . T CA . A . AT . . . . A AT . C . . .
blockSeqs : . . . . . A . . . CA . . . AT . . . . . T . . . . .
blockSeqs : . . . . . . . . . CA . . . AT . . . . . T . . . . .
blockSeqs : . . . . . . . . . CA . . . AT . . . . . T . . . . .
blockSeqs : . . . . . . . . . CA . . . TT . . . . . C . . . . .
blockSeqs : . . . . . . . . . CA . . . TA . . . . . C . . . . .
blockSeqs : . . . . . . . . . CA . . . AT . . . . . C . . . .
blockSeqs : . . . . . . . . CA . . . AT . . . . . C . . .
blockSeqs : . . . . . CA . . . AT . . . . . C . . .
blockSeqs : . . . . . CA . . . AT . . . . . . . . .
blockSeqs : . . . CA . . . AT . . . . . . . . .
blockSeqs : . . . CA . . . A . . . . . . . . .
blockSeqs : . . . TG . . . T . . . . . . . . .
blockSeqs : . . . T . . . T . . . . . . . . .
blockSeqs : . . . T . . . A . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . . .
blockSeqCons : CA
originalCons : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
finalCons : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Alignments
lowQualScore : 11 2222
lowQualScore : 4 55 8 4 3 22 1 1 3 88 1 3 0 22 44 1 1 22 1 3 0000 1 3 1 4 5
lowQualScore : . .. . . . .. . . . .. . . . .. .. . . .. . . .... . . . . .
lowQualScore : 4 55 0 0 3 55 8 8 6 55 8 6 5 55 55 8 8 55 8 6 9999 8 6 8 4 0
consensus : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 ) : AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964 : AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965 : AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966 : AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967 : AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968 : AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969 : AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970 : --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTTAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971 : atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972 : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973 : TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974 : -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGA--GT-TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979 : TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980 : TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGA--GT-TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981 : TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983 : TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984 : TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGTAAATAT-CAAA--G--TC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G