lowQualScore                  :                         11                1111     33                      11111111111                 2222                                       
lowQualScore                  :        5   66 8  55     77  1 1    1      4444     00 22 1     1        77 22222222222 1   1   22  1 3 0000  1   3   1    5  1        5           
lowQualScore                  :        .   .. .  ..     ..  . .    .      ....     .. .. .     .        .. ........... .   .   ..  . . ....  .   .   .    .  .        .           
lowQualScore                  :        0   11 9  66     33  9 9    9      2222     00 55 8     8        77 77777777777 8   8   55  8 6 9999  8   6   8    0  4        7           
consensus                     : AAATTTT-TCT--A-GT-GTAAAA--GTTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTN-TGA--NTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( gi|129963 )       : AAATTTT-TCT--A-GT-GTAAAA--GTCT-GGAC-AAGTAA--T-TTTTT--T--T-CGGAC-AAGTGAAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129966                     : AAATTTT-TCT--A-GT-GTAAAA--GTCT-GGAC-AAGTAA--TATTTTT--T--T-TGGAC-AAGTGAAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129964                     : AATTTTT-TCT--A-GT-GTAAAAA-GTCT-GGAC-AAGCAA--T-TTTTT--T--T-CGGAC-AAGTGGAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965                     : AATTTTT-TCT--AAGT-GTAAAAA-GTCT-GGAC-AAGCAA--T-TTTTT--T--TTCGGAC-AAGTGGAA-TTA-TCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129968                     : AAATTTT-TCT--A-GTTGTAAAA--GTCT--GACAAAGTAAT-T-TTTTT--T--T-CGGACAAAGTGAAA-TTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129967                     :  AATTTT-TCCTAA-GT-GTAAAA--GTCT-GGAC-AAGTAA--T-TTTTT--T--T-CGGAC-AAGTGAAA-TTA-TCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129969                     :  AATTTTATCT--A-GT-GTAAAG-----C-GGAC-AA-TAA--TATTTTT--T--T-CGGAC-AAGTGAAA-TTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129972                     :    TTTT-TCT--ACAT-TTAAAATAATTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAG-AAGTGAAA-GTT-TTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973                     :      TT-TTT--A-GT--TAAAA--GTCT-GGA---AGTAA--T-ATTTT--T--T-TGGAC-ACGTG-AA-TTC-TAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129970                     :            --A-GT-CTAAAATTGTTTTGGAC-AGGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGAG-TTA-T-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971                     :       atttcttttagtacAAAA--ATTT-GGAC-AAGTAA--G-TGTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129974                     :    ttttttatacagttaaaAAAA--CTTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAAGTTG-GAG--T--TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975                     :                            TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976                     :                            TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129979                     :                            TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978                     :                            TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129977                     :                            TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CGGAC-AAGTGAAA-GTT-TGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980                     :                            TTT-GGAC-AAGTAA--G-TTTTT--CAAT-CGGAC-AAGTGAAAGTTA-GAG--T--TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981                     :                            TTT-GGAC-AA-TAA--G-TTTTTCAT--T-CAGAC-AAGTGAAA-GTT-TGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129983                     :                            TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CAGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129982                     :                            TTT-GGAC-AAGTAA--G-TTTTTCAT--T-CAGAC-AAGTGAAA-GTT-TGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984                     :                            TTT-GGAC-AAGCAAAAT-TTGTG--T--T-CGGAC-AAGTAAA---TA-TCA--AAGTC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G
gi|129984                     :                                                    --T--T-AGGAC-AAGTGACT-TTG-ATA--TT--T-ACT-TGT--CC-G-A----AC-ACA-AAT-





Alignments
lowQualScore                  :                                        11                                                                        2222                                       
lowQualScore                  :                      4   55 8 4   3    22    1    1      3      88       1          22 1 1 77777 1   1   22  1 3 0000  1   3   1    4           5           
lowQualScore                  :                      .   .. . .   .    ..    .    .      .      ..       .          .. . . ..... .   .   ..  . . ....  .   .   .    .           .           
lowQualScore                  :                      4   55 0 0   3    55    8    8      6      55       8          88 0 0 22222 8   8   55  8 6 9999  8   6   8    4           0           
consensus                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 )      :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-NTGANT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964                     :               AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965                     :               AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCATT---ATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967                     :                AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCATT---ATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968                     :               AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATT-ATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969                     :                AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCATT---TTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970                     :                          --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---TAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971                     :                     atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972                     : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTAGT----TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973                     :                    TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAATT---ATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974                     :                                   -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGAGT----TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGAGT---ATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980                     :                                           TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGAGT----TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981                     :                                           TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGAGT---ATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGAGT---A-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984                     :                                           TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGT--AAAT-ATCAAA---GTC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G





Alignments
lowQualScore                  :                                        11                                                                       2222                                       
lowQualScore                  :                      4   55 8 4   3    22    1    1      3      88       1          3  0 22  44 1   1   22  1 3 0000  1   3   1    4           5           
lowQualScore                  :                      .   .. . .   .    ..    .    .      .      ..       .          .  . ..  .. .   .   ..  . . ....  .   .   .    .           .           
lowQualScore                  :                      4   55 0 0   3    55    8    8      6      55       8          6  5 55  55 8   8   55  8 6 9999  8   6   8    4           0           
consensus                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 )      :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964                     :               AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965                     :               AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967                     :                AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968                     :               AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969                     :                AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970                     :                          --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTTAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971                     :                     atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972                     : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973                     :                    TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974                     :                                   -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGA--GT-TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980                     :                                           TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGA--GT-TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981                     :                                           TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984                     :                                           TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGTAAATAT-CAAA--G--TC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G





Alignments
lowQualScore                  :                                        11                                                                       2222                                       
lowQualScore                  :                      4   55 8 4   3    22    1    1      3      88       1          3  0 22  44 1   1   22  1 3 0000  1   3   1    4           5           
lowQualScore                  :                      .   .. . .   .    ..    .    .      .      ..       .          .  . ..  .. .   .   ..  . . ....  .   .   .    .           .           
lowQualScore                  :                      4   55 0 0   3    55    8    8      6      55       8          6  5 55  55 8   8   55  8 6 9999  8   6   8    4           0           
consensus                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 )      :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964                     :               AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965                     :               AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967                     :                AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968                     :               AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969                     :                AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970                     :                          --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTTAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971                     :                     atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972                     : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973                     :                    TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974                     :                                   -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGA--GT-TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980                     :                                           TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGA--GT-TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981                     :                                           TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984                     :                                           TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGTAAATAT-CAAA--G--TC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G


blockSeqs                     :                      A   TA A T   A    TT    T    A      T      CA       A          A    TC  AT T   G   GG  A A TTCC  G   C   A    G           C
blockSeqs                     :                      .   .  C .   .    TA    .    .      T      CA       .          A    .   AT .   .   .   . A AT    .   C   .    .           .
blockSeqs                     :                      .   .  . .   .    A     .    .      .      CA       .          .    .   AT .   .   .   . . T     .   .   .    .           .
blockSeqs                     :                      .   .  . .   .    .     .    .      .      CA       .          .    .   AT .   .   .   . . T     .   .   .    .           .
blockSeqs                     :                      .   .  . .   .    .     .    .      .      CA       .          .    .   AT .   .   .   . . T     .   .   .    .           .
blockSeqs                     :                      .   .  . .   .    .     .    .      .      CA       .          .    .   TT .   .   .   . . C     .   .   .    .           .
blockSeqs                     :                      .   .  . .   .    .     .    .      .      CA       .          .    .   TA .   .   .   . . C     .   .   .    .           .
blockSeqs                     :                      .   .  . .   .    .     .    .      .      CA       .          .    .   AT .   .   .   . . C     .   .   .    .            
blockSeqs                     :                          .  . .   .    .     .    .      .      CA       .          .    .   AT .   .   .   . . C     .   .   .                 
blockSeqs                     :                                   .    .     .    .      .      CA       .          .    .   AT .   .   .   . . C     .   .   .                 
blockSeqs                     :                                   .    .     .    .      .      CA       .          .    .   AT .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      CA       .          .    .   AT .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      CA       .          .    .   A  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      TG       .          .    .   T  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      T        .          .    .   T  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      T        .          .    .   A  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      .        .          .    .   A  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      .        .          .    .   T  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      .        .          .    .   A  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      .        .          .    .   A  .   .   .   . . .     .   .   .                 
blockSeqs                     :                                              .    .      .      .        .          .    .   T  .   .   .   . . .     .   .   .                 


blockSeqCons                  :                                                                 CA
originalCons                  :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
finalCons                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC





Alignments
lowQualScore                  :                                        11                                                                       2222                                       
lowQualScore                  :                      4   55 8 4   3    22    1    1      3      88       1          3  0 22  44 1   1   22  1 3 0000  1   3   1    4           5           
lowQualScore                  :                      .   .. . .   .    ..    .    .      .      ..       .          .  . ..  .. .   .   ..  . . ....  .   .   .    .           .           
lowQualScore                  :                      4   55 0 0   3    55    8    8      6      55       8          6  5 55  55 8   8   55  8 6 9999  8   6   8    4           0           
consensus                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
Reference ( family-790 )      :               AAATTTT-TCT--A-G-TGT-AAAA--GTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129963                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCGCTAGATAT-TTCCACACCCC
gi|129964                     :               AATTTTT-TCT--A-G-TGTAAAAA--GTCT-GGAC-AAGCAA-TTTTTT--TTCGGAC-AAGTGGAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129965                     :               AATTTTT-TCT--AAG-TGT-AAAAA-GTCT-GGAC-AAGCAA-TTTTTTT-TTCGGAC-AAGTGGAATT-ATCA--TTATTTACT-TGC--CC-G-A----GGGACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129966                     :               AAATTTT-TCT--A-G-TGT-AAAA--GTCT-GGAC-AAGTAATATTTTT--TTTGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGT-GCTC-TCACTAGATAT-TTCCACACCCC
gi|129967                     :                AATTTT-TCCTAA-G-TGT-AAAA--GTCT-GGAC-AAGTAA-TTTTTT--TTCGGAC-AAGTGAAATT-ATCA--TTATT-ACT-TGC--CC-G-A----GG-ACA-AGA-GCTC-TTGCTAGATAT-TTCCACACCCC
gi|129968                     :               AAATTTT-TCT--A-GTTGT-AAAA--GTCT--GACAAAGTAA-TTTTTTT-TTCGGACAAAGTGAAATTATTCATCTCATT-ACT-TGG--CC-C-ATTCCGG-ACA-AGTAGCTCGTTGCTAGATATCTTCGACATCCC
gi|129969                     :                AATTTTATCT--A-G-TGT-AAAG-----C-GGAC-AA-TAATATTTTT--TTCGGAC-AAGTGAAATTATTCA--TTTTT-AC--TGC--CC-G-A----GG-ACA-AG--GCTC-TCACCAGATA--TTCCACACCC
gi|129970                     :                          --A-G-TCT-AAAATTGTTTTGGAC-AGGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTTAT-ACTGTGCGGCC-G-AT---GG-ACA-AGT--CTC-T
gi|129971                     :                     atttcttttagtac-AAAA--ATTT-GGAC-AAGTAA-GTGTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-G
gi|129972                     : ttttttatacagttaaaTTTT-TCT--ACA-TTT-AAAATAATTT-GGAC-AAGTAA-GTTTTTCATTCGGAG-AAGTGAAAGT-TTTA--GT-TT-ACT-TGC--CC-GAA----AG-ACG-AGT-G
gi|129973                     :                    TT-TTT--A-G-T-T-AAAA--GTCT-GG---AAGTAA-TATTTT--TTTGGAC-ACGTG-AATT-CTAA--TTATT-A-T-TG---CC-G-A-----G-ACA-ATT-GCTT-CTACT-GATAT-TTTC-CACCC
gi|129974                     :                                   -AAAA--CTTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TGGA--GT-TT-ACT-TGC--CCAA-A----GA-ACA-AGT-G
gi|129975                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AT---GG-ACA-AGT-GC
gi|129976                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129977                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129978                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129979                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCGGAC-AAGTGAAAGT-TTGA--GTATT--CT-TGC--CC-G-AC---GG-GCA-AGT-G
gi|129980                     :                                           TTT-GGAC-AAGTAA-GTTTTTCAATCGGAC-AAGTGAAAGT-TAGA--GT-TT-ACT-TGC--CC-GAA----GG-ACA-AGT-G
gi|129981                     :                                           TTT-GGAC-AA-TAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTATG-ACT-TGC--CC-G-AC---GG-ACA-AGT-G
gi|129982                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129983                     :                                           TTT-GGAC-AAGTAA-GTTTTTCATTCAGAC-AAGTGAAAGT-TTGA--GTA-T-ACT-TGC--CC-G-A----CG-GCACAGT-G
gi|129984                     :                                           TTT-GGAC-AAGCAA-AATTTGTGTTCGGAC-AAGTAAATAT-CAAA--G--TC-ACT-TGT--CC-T-AAT--GG-ACA-AGT-G