lowQualScore : 111111 11
lowQualScore : 000000 1 1 333 1 22 44 1 4444 4 22 666666
lowQualScore : ...... . . ... . .. .. . .... . .. ......
lowQualScore : 222222 9 9 777 9 66 00 9 0000 9 66 777777
consensus : TGAAAAT------AT-TT-G--AT-TC--GG--CGA-ACGGGAA----TATT--GA----TNAAGTCGGTTAACAGGAAGTT
Reference ( gi|29916 ) : TGAAAAT------AT-TT-G--AT-TC--GG--CAA-ATGGGAA----TACT--GA----TGAAGTCGGTTAACAGGAAGTT
gi|29917 : TGAAAAT------AT-TT-G--AT-TC--GG--CAA-ATGGGAA----TACT--GA----TGAAGTCGGTTAAACGGAAGTT
gi|29918 : TGAAAAT------AT-TT-G--AT-TC--GG--CAA-ATGGGAA----TATT--GA----TGAAGTCAGATAACAGGAAGTT
gi|29920 : TGAAAATGCTAGTAT-TC-G--AT-TC--GG--CAA-ATGGGAA----TATT--GA----TGAAGTCGGTTAACAGGAAGTT
gi|29921 : TGAAAAT------AT-TT-G--AT-TC--GG--CAA-ATGGGAA----TATT--GA----TGAAGTCGGT
gi|29922 : TGAAAAT------AT-TG-G--AT-TC--GG--CAA-ACGGGTA----TATT--GA----TTACGTCGGTTAACAGGAAGTT
gi|29923 : TGAAAA-------AT-TT-G--AT--C--GG--CAA-AATGGAA----TATT--GA----TGAAATCGGTTAACAGGAAGTT
gi|29919 : TGAAAAT------AT-TTTG--AT-TC--GG--CAA-ATGGGAA----TAGTTGGA----TGAAGCAGATAAACAGG-AGTT
gi|29924 : TGAAAAT------AT-TT-G--AT-TC--GG--TAA-ATAGGAA----TATT--GA----TG---------AACAGGAAGTT
gi|29925 : TGAAAAT------AT-TT-G--TT-TC------CGG-ACAGGAA----TATT--GA----CTAAGTCGGTTAACGGGAAGTT
gi|29926 : TGAAAATGGTAA-AT-TT-GCAAT-TC--GGTTCAATATGG-AA----TATT--GA----T-AAGTCGGTTAACAGGAAGTT
gi|29927 : GAAAAT------AT-TT-G--TT-TC--GGA-CGA-GTGGGAA----TATT--GACTAATTAAGTCGGAAAACAGGAAGTT
gi|29928 : GAAAAT------AT-TT-G--TT-TC--GGA-CGG-ACGGAAAATAATATT--GAA---TTAAGTCGGTTAACAGGAAGTT
gi|29930 : GAAAAT------AT-TT-G--TT-TC--GGA-CAG-ACGAAAA----TATT--GA----CTAAGTCGGTTTACCGGAAGTT
gi|29931 : GAAAAT------AT-TT-G--TT-TC--GG--C----CGG--A----CATT--GA----CTAAGTCAGTTAACAGGAAGTT
gi|29929 : GAAAAT------AT-TT-G--TT-TC--GGA-TAG-ATGGAAA----TATT--TA----GTAAGTCACTTAACAGGAAGTT
gi|29932 : AAAAT------AT-TT-G--GT-TTCAGA--CGG-ATGGGAA----TATT--GA----CTTATTCGGTTAACAGGAAGT
gi|29933 : AAAT------ATGTT-G--AT-TC--GG--CAA--TGGGAA----TATT--GA----TGAAGTCGGTTAACAGGAAGTT
gi|29934 : AAAT------AT-GT-G--AT-TC--GG--CAA--TGGGAA----TACT--G-----TGAAGTCGGTTAACAGGAAGTT
gi|29935 : AAT------AT-TT-G--TC-TC--GGA-CGG-ATGGGAA----TATT--GA----CTAAGTCGGATAACAGGAAGTT
gi|29936 : AAT------AT-TT-T--GTCTC--GGA-CGG-ATGGGAA----TATT--GA----CTAAGTCGGATAACAGGAAGTT
gi|29937 : ------AT-GT-G--AT-TT--AT--GAA-ACGGGAA----TATT--GA----TGAAGTCGGTTAACAGGAAGTT
Alignments
lowQualScore : 11
lowQualScore : 999999 1 1 333 1 22 33 6 2 3333 1 1 5555 2
lowQualScore : ...... . . ... . .. .. . . .... . . .... .
lowQualScore : 888888 8 8 111 8 55 44 3 5 9999 8 8 7777 8
consensus : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
Reference ( family-781 ) : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TNAAGTCGGTTAACAGGAAGTT
gi|29916 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-CT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29917 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-CT-GA----TGAAGTCGGTTAAACGGAAGTT
gi|29918 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCAGATAACAGGAAGTT
gi|29919 : TGAAAAT------AT-TTTG--AT-TC--GG--CAAATGGGAA----TAGTTGGA----TGAAGCAGATAAACAGG-AGTT
gi|29920 : TGAAAATGCTAGTAT-TC-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29921 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCGGT
gi|29922 : TGAAAAT------AT-TG-G--AT-TC--GG--CAAACGGGTA----TA-TT-GA----TTACGTCGGTTAACAGGAAGTT
gi|29923 : TGAAAA-------AT-TT-G--AT--C--GG--CAAAATGGAA----TA-TT-GA----TGAAATCGGTTAACAGGAAGTT
gi|29924 : TGAAAAT------AT-TT-G--AT-TC--GG--TAAATAGGAA----TA-TT-GA----TG---------AACAGGAAGTT
gi|29925 : TGAAAAT------AT-TT-G--TT-TC------CGGACAGGAA----TA-TT-GA----CTAAGTCGGTTAACGGGAAGTT
gi|29926 : TGAAAATGGTAA-AT-TT-GCAAT-TC--GGTTCAATATGGAA----TA-TT-GA----T-AAGTCGGTTAACAGGAAGTT
gi|29927 : GAAAAT------AT-TT-G--TT-TC--GGA-CGAGTGGGAA----TA-TT-GACTAATTAAGTCGGAAAACAGGAAGTT
gi|29928 : GAAAAT------AT-TT-G--TT-TC--GGA-CGGACGGAAAATAATA-TT-GAA---TTAAGTCGGTTAACAGGAAGTT
gi|29929 : GAAAAT------AT-TT-G--TT-TC--GGA-TAGATGGAAA----TA-TT-TA----GTAAGTCACTTAACAGGAAGTT
gi|29930 : GAAAAT------AT-TT-G--TT-TC--GGA-CAGACGAAAA----TA-TT-GA----CTAAGTCGGTTTACCGGAAGTT
gi|29931 : GAAAAT------AT-TT-G--TT-TC--GG--C---CGG--A----CA-TT-GA----CTAAGTCAGTTAACAGGAAGTT
gi|29932 : AAAAT------AT-TT-G--GT-TTCAGA--CGGATGGGAA----TA-TT-GA----CTTATTCGGTTAACAGGAAGT
gi|29933 : AAAT------ATGTT-G--AT-TC--GG--C-AATGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29934 : AAAT------AT-GT-G--AT-TC--GG--C-AATGGGAA----TA-CT-G-----TGAAGTCGGTTAACAGGAAGTT
gi|29935 : AAT------AT-TT-G--TC-TC--GGA-CGGATGGGAA----TA-TT-GA----CTAAGTCGGATAACAGGAAGTT
gi|29936 : AAT------AT-TT-T--GTCTC--GGA-CGGATGGGAA----TA-TT-GA----CTAAGTCGGATAACAGGAAGTT
gi|29937 : ------AT-GT-G--AT-TT--AT--GAAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
Alignments
lowQualScore : 11
lowQualScore : 999999 1 1 333 1 22 33 6 2 3333 1 1 5555 3
lowQualScore : ...... . . ... . .. .. . . .... . . .... .
lowQualScore : 888888 8 8 111 8 55 44 3 5 9999 8 8 7777 6
consensus : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
Reference ( family-781 ) : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29916 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-CT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29917 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-CT-GA----TGAAGTCGGTTAAACGGAAGTT
gi|29918 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCAGATAACAGGAAGTT
gi|29919 : TGAAAAT------AT-TTTG--AT-TC--GG--CAAATGGGAA----TAGTTGGA----TGAAGCAGATAAACAGG-AGTT
gi|29920 : TGAAAATGCTAGTAT-TC-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29921 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCGGT
gi|29922 : TGAAAAT------AT-TG-G--AT-TC--GG--CAAACGGGTA----TA-TT-GA----TTACGTCGGTTAACAGGAAGTT
gi|29923 : TGAAAA-------AT-TT-G--AT--C--GG--CAAAATGGAA----TA-TT-GA----TGAAATCGGTTAACAGGAAGTT
gi|29924 : TGAAAAT------AT-TT-G--AT-TC--GG--TAAATAGGAA----TA-TT-GA----TG---------AACAGGAAGTT
gi|29925 : TGAAAAT------AT-TT-G--TT-TC------CGGACAGGAA----TA-TT-GA----CTAAGTCGGTTAACGGGAAGTT
gi|29926 : TGAAAATGGTAA-AT-TT-GCAAT-TC--GGTTCAATATGGAA----TA-TT-GA----T-AAGTCGGTTAACAGGAAGTT
gi|29927 : GAAAAT------AT-TT-G--TT-TC--GGA-CGAGTGGGAA----TA-TT-GACTAATTAAGTCGGAAAACAGGAAGTT
gi|29928 : GAAAAT------AT-TT-G--TT-TC--GGA-CGGACGGAAAATAATA-TT-GAA---TTAAGTCGGTTAACAGGAAGTT
gi|29929 : GAAAAT------AT-TT-G--TT-TC--GGA-TAGATGGAAA----TA-TT-TA----GTAAGTCACTTAACAGGAAGTT
gi|29930 : GAAAAT------AT-TT-G--TT-TC--GGA-CAGACGAAAA----TA-TT-GA----CTAAGTCGGTTTACCGGAAGTT
gi|29931 : GAAAAT------AT-TT-G--TT-TC--GG--C---CGG--A----CA-TT-GA----CTAAGTCAGTTAACAGGAAGTT
gi|29932 : AAAAT------AT-TT-G--GT-TTCAGA--CGGATGGGAA----TA-TT-GA----CTTATTCGGTTAACAGGAAGT
gi|29933 : AAAT------ATGTT-G--AT-TC--GG--C-AATGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29934 : AAAT------AT-GT-G--AT-TC--GG--C-AATGGGAA----TA-CT-G-----TGAAGTCGGTTAACAGGAAGTT
gi|29935 : AAT------AT-TT-G--TC-TC--GGA-CGGATGGGAA----TA-TT-GA----CTAAGTCGGATAACAGGAAGTT
gi|29936 : AAT------AT-TT-T--GTCTC--GGA-CGGATGGGAA----TA-TT-GA----CTAAGTCGGATAACAGGAAGTT
gi|29937 : ------AT-GT-G--AT-TT--AT--GAAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
blockSeqs : GCTAGT G T CAA C CA TT A T ATAA G G CTAA G
blockSeqs : GGTAA . . A . . A A T . . . A G
blockSeqs : . . . A . . A A T . . . . G
blockSeqs : . . . A . . A A T . . . . G
blockSeqs : . . . A . . A A T . . . . G
blockSeqs : . . . A . . A A C . . . . T
blockSeqs : . . . A . . A A A . . . . G
blockSeqs : . . . A . . . A T . . . . G
blockSeqs : . . . A . . . G C . . . . T
blockSeqs : . . . T . . . A A . . . . T
blockSeqs : . . . T . . . G T . . . . T
blockSeqs : . . . T . . . G C . . . . T
blockSeqs : . . . T . . . A T . . . . T
blockSeqs : . . . T . . . A C . . . . T
blockSeqs : . . . T . . . G C . . . . T
blockSeqs : . . . G . . . G T . . . . G
blockSeqs : . . . A . . . G T . . . . G
blockSeqs : . . . A . . . A T . . . . T
blockSeqs : . . . T . . . . T . . . . T
blockSeqs : . . . G . . . . T . . . . G
blockSeqs : . . . A . . . . C . . . . .
blockSeqCons :
originalCons : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
finalCons : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
Alignments
lowQualScore : 11
lowQualScore : 999999 1 1 333 1 22 33 6 2 3333 1 1 5555 3
lowQualScore : ...... . . ... . .. .. . . .... . . .... .
lowQualScore : 888888 8 8 111 8 55 44 3 5 9999 8 8 7777 6
consensus : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
Reference ( family-781 ) : TGAAAAT------AT-TT-G--AT-TC--GG--CGAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29916 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-CT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29917 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-CT-GA----TGAAGTCGGTTAAACGGAAGTT
gi|29918 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCAGATAACAGGAAGTT
gi|29919 : TGAAAAT------AT-TTTG--AT-TC--GG--CAAATGGGAA----TAGTTGGA----TGAAGCAGATAAACAGG-AGTT
gi|29920 : TGAAAATGCTAGTAT-TC-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29921 : TGAAAAT------AT-TT-G--AT-TC--GG--CAAATGGGAA----TA-TT-GA----TGAAGTCGGT
gi|29922 : TGAAAAT------AT-TG-G--AT-TC--GG--CAAACGGGTA----TA-TT-GA----TTACGTCGGTTAACAGGAAGTT
gi|29923 : TGAAAA-------AT-TT-G--AT--C--GG--CAAAATGGAA----TA-TT-GA----TGAAATCGGTTAACAGGAAGTT
gi|29924 : TGAAAAT------AT-TT-G--AT-TC--GG--TAAATAGGAA----TA-TT-GA----TG---------AACAGGAAGTT
gi|29925 : TGAAAAT------AT-TT-G--TT-TC------CGGACAGGAA----TA-TT-GA----CTAAGTCGGTTAACGGGAAGTT
gi|29926 : TGAAAATGGTAA-AT-TT-GCAAT-TC--GGTTCAATATGGAA----TA-TT-GA----T-AAGTCGGTTAACAGGAAGTT
gi|29927 : GAAAAT------AT-TT-G--TT-TC--GGA-CGAGTGGGAA----TA-TT-GACTAATTAAGTCGGAAAACAGGAAGTT
gi|29928 : GAAAAT------AT-TT-G--TT-TC--GGA-CGGACGGAAAATAATA-TT-GAA---TTAAGTCGGTTAACAGGAAGTT
gi|29929 : GAAAAT------AT-TT-G--TT-TC--GGA-TAGATGGAAA----TA-TT-TA----GTAAGTCACTTAACAGGAAGTT
gi|29930 : GAAAAT------AT-TT-G--TT-TC--GGA-CAGACGAAAA----TA-TT-GA----CTAAGTCGGTTTACCGGAAGTT
gi|29931 : GAAAAT------AT-TT-G--TT-TC--GG--C---CGG--A----CA-TT-GA----CTAAGTCAGTTAACAGGAAGTT
gi|29932 : AAAAT------AT-TT-G--GT-TTCAGA--CGGATGGGAA----TA-TT-GA----CTTATTCGGTTAACAGGAAGT
gi|29933 : AAAT------ATGTT-G--AT-TC--GG--C-AATGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT
gi|29934 : AAAT------AT-GT-G--AT-TC--GG--C-AATGGGAA----TA-CT-G-----TGAAGTCGGTTAACAGGAAGTT
gi|29935 : AAT------AT-TT-G--TC-TC--GGA-CGGATGGGAA----TA-TT-GA----CTAAGTCGGATAACAGGAAGTT
gi|29936 : AAT------AT-TT-T--GTCTC--GGA-CGGATGGGAA----TA-TT-GA----CTAAGTCGGATAACAGGAAGTT
gi|29937 : ------AT-GT-G--AT-TT--AT--GAAACGGGAA----TA-TT-GA----TGAAGTCGGTTAACAGGAAGTT