lowQualScore : 1111111111111111 1 1111 111
lowQualScore : 2 2 2 2 55555 4 7777777777777777 2 2 2 2 4 4 2 2 6666 2 2 4 333 22 2 2 2 22 4 3 1 1 1 1 1 1 0 1 3 1 6 3 4
lowQualScore : . . . . ..... . ................ . . . . . . . . .... . . . ... .. . . . .. . . . . . . . . . . . . . . .
lowQualScore : 2 0 0 0 00000 0 5555555555555555 0 0 0 0 0 0 0 0 0000 0 0 0 000 88 0 0 0 88 0 8 9 9 9 9 9 9 2 9 8 9 0 9 0
consensus : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
Reference ( gi|103642 ) : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103646 : TTTAAC-TGATATC-A-TA-C-----T-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-AAAT-TATAAA-GGA---TT--TT-TTTT-C-ATT--GAATGGCAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103643 : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GGACGTT-AAA-A-T-T-ATC-TGTAA-A--C-T-TAAA-G-ATT-TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TTC-A-CTTG-AAG--A-TGAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103648 : TTTAAC-TGATATC-AATA-C-----G-TG------------TAA-GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--TT-TTTTCC-ATG--AAATG-CAATTA-A-TGCAA-CTTGAAAGA-A-TTAGATAAAAACAAATTCAGCA-CTTGTT
gi|103649 : TTTAAC-TGATATC---TA-C-----G-TG------------TAA-GCACGTT-AAA-A-AAT-ATC-TGT-A-AA-T-T-TAAA-G-ATTTTT--TT-TTTT-C-ATG--AAATG-C----A-A-TGC-A-CTTG-AGGA-ATTTAGA--AAAA--AATTCAGCA-CTTGTT
gi|103647 : TTTAAT-TGATATC-A-TA-C-----G-TG------------TT--GACCGAA-CAA-A-T-T-ATC-TGT-A-AA-T-T-TACA-G-A---CT--TT-TTTT-C-TTG--ATATG-CAA-TA-A-TGC-A-CTTA-GGGA-A-TTAGAT-AAAAC-AATTCTGCA-ATT
gi|103652 : TTTA-C-TGATATC-A-TA-C-----G-TG------------T---TCAGATT-AAA-A-A-T-ATC-TGT-A-AA-T-T-TAAAAG-A---TT--TT-TTTT-C-ATG--AATTG-CAA-TA-A-TG--A-CTTG-AGGA-A-T--AAT-AAAA--AATTCAGCA-CT
gi|103645 : TTTAAT-TGATATC-A-TA-C-----G-TGGTGTTGGTGGTGTT--GCGCGTT-AAA-AAT-T-ATC-TGT-A-AA-T-T-GAAA-G-A---TTATTT-TTTT-C-ATG--ATATG-CAA-TA-A-TAC-A-CTT--AAGA-A-TTA-AT-AAAAC-AATTCTGCA-CTTGTT
gi|103650 : TTTAAT-T----TC-A-TA-CAGGGGG-TA------------TT--GCATGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-AAAA-G-A---CT--TT-T-TT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTG-TGGA-A-TTAAAT-AAAAC-AATTATGTA-CTTG
gi|103653 : TTTAACATG-TATCCA-TA-C-----G-GG------------TAAGGCACGTT-AAA-A-T-TTATC-TGTAA-A--T-T-T--A-G-A---TT--TT-TTTT-CAATG--AAATG-C-A-T--A-TGC-A-CTTG-AGGA-A-TTATA--AAAAC-AATTCAGCAGATTGTT
gi|103651 : TTTAAT-TGATATC-A-TA-C-----A-TG------------TT--GTACGTT-TAA-A-T-T-ATC-TGT-A-A-------AAA-G-A----T--TT-TTTT-C-ATG--ATATG-CAA-AA-A-TGC-A------A--------AGAT-AAAAC-AATTCTGCA-CTTGTT
gi|103655 : TTTAAC-TGATAAC-A-TA-C-----GTTG------------TA--GCCAGTTCAAA-A-T-TAATCTTGT-ACA-------AAA-G-AT--TT--TT-TTTT-C-ATGAAAAATG-CAA-AA-A-GCC-ATCTTG-AGGATA-TTAGAT--AAAC-AATTCAGCA--TTGT
gi|103654 : TTTAAT-TGATATC-A-GA-G-----T-TG------------T---GC-CGTT-AAA---T-T-GTC-TGT-A-A--TAT-TAAA-G-A---TT--TT-TTTT---ATG--ATATG-C-A-TA-A-TGC-A-CTTG-AGG--A-TTAAAT-AAA
gi|103656 : TAAT-TGATAAC-A-CA-C-----G----------------------------AA-A-T-T-ATC-TGT-A-AA-T-T-TAAA-G-G---TT--TT-TTT----ATG--ATATG-CAA-TG-A-TGC-A-CTTG-AAGA-ATTTAAAT-AAAAC-AATTCTGCA-CTTGTT
gi|103658 : AAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-A-T-ATC-TCTAA-A--T-T-TAAA-G-AT--TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-A-GA-A-TTAGAT-AAAACAAATTCAGCACCTTGTT
gi|103657 : AAT-TGATATC-A-TA-C-----G-TG------------TT--ACACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--AT-TTTT-T-ATG---AATG-CAT-TA-A-TG--A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCT-CTTGTT
gi|103659 : AAT-TCATATC-A-TAAC-----G-TG------------TA--G-ACGTT-AAATA-A-T-ATC-TGA-A-A--T-T-AAAA-G-A---TT--TTTTTTT-C-ATG--AAATG-CAA-CATA-TGC-A-CTTG-A-GA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103660 : AT-TGATATC-A-TA-C-----A-T-------------TA----ATTTA-AAA-A-T-T-ATCCTGT-A-A--A-T-TAAA-GGA---TT--TT-TTT----ATG--ATATG-CAA-TA-AATGT-A-CTCG-AGGA-A-TTAAAT-AAAGCAAAATCTGCA-CTTGTT
gi|103644 : -TGATACC-A-TA-G-----G-TG------------CT--GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A----T--GT-TTTT-C-ACG--ATATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAAAT-AAAAC-AATTCCACA-CTTGTT
gi|103661 : tttgttC-A-CA-T-----A-TG------------TT--GCACGTT-GAA-A-T-A-ATC-TGT-A-AA-T-T-TAAA-G-A---AT--TT-TTTT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTA-AGGA-A-TTAAAT-GAAAT-AATTCTGCA-CTTGTT
gi|103662 : -A-TA-C-----GGTG------------TT--GCACGTG-AAA-A-T-T-ATC-TGT-A-A--A-T-TTAA-G-ACT-TT--TT-TTTT-A-ATG--ATATGACAA-TA-A-TAC-A-CTTA-AGGG-A-ATAAAT-AAAAC-AATTCTGCA-TTTGT
gi|103663 : ATG-CAA-TA-A-TGC-A-CTTG-GGGA-A-TTAGAT--AAAC-AATTCTGCA-CTTGTT
Alignments
lowQualScore : 1111111111111111 1 1111 111
lowQualScore : 2 1 1 1 44444 3 2222222222222222 1 1 1 1 3 3 1 1 4444 1 1 3 222 22 1 1 1 22 2 3 1 1 1 1 1 1 1 3 1 5 1 3
lowQualScore : . . . . ..... . ................ . . . . . . . . .... . . . ... .. . . . .. . . . . . . . . . . . . . .
lowQualScore : 1 9 9 9 88888 8 6666666666666666 9 9 9 9 8 8 4 9 8888 9 9 8 444 66 9 9 9 66 9 6 8 8 8 8 8 8 8 6 8 7 0 8
consensus : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
Reference ( family-780 ) : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
gi|103642 : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103643 : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GGACGTT-AAA-A-T-T-ATC-TGTAA-A--C-T-TAAA-G-ATT-TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TTC-A-CTTG-AAG--A-TGAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103644 : -TGATACC-A-TA-G-----G-TG------------CT--GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A----T--GT-TTTT-C-ACG--ATATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAAAT-AAAAC-AATTCCACA-CTTGTT
gi|103645 : tttgttTTTAAT-TGATATC-A-TA-C-----G-TGGTGTTGGTGGTGTT--GCGCGTT-AAA-AAT-T-ATC-TGT-A-AA-T-T-GAAA-G-A---TTATTT-TTTT-C-ATG--ATATG-CAA-TA-A-TAC-A-CTT--AAGA-A-TTA-AT-AAAAC-AATTCTGCA-CTTGTT
gi|103646 : TTTAAC-TGATATC-A-TA-C-----T-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-AAAT-TATAAA-GGA---TT--TT-TTTT-C-ATT--GAATGGCAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103647 : TTTAAT-TGATATC-A-TA-C-----G-TG------------TT--GACCGAA-CAA-A-T-T-ATC-TGT-A-AA-T-T-TACA-G-A---CT--TT-TTTT-C-TTG--ATATG-CAA-TA-A-TGC-A-CTTA-GGGA-A-TTAGAT-AAAAC-AATTCTGCA-ATT
gi|103648 : TTTAAC-TGATATC-AATA-C-----G-TG------------TAA-GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--TT-TTTTCC-ATG--AAATG-CAATTA-A-TGCAA-CTTGAAAGA-A-TTAGATAAAAACAAATTCAGCA-CTTGTT
gi|103649 : TTTAAC-TGATATC---TA-C-----G-TG------------TAA-GCACGTT-AAA-A-AAT-ATC-TGT-A-AA-T-T-TAAA-G-ATTTTT--TT-TTTT-C-ATG--AAATG-C----A-A-TGC-A-CTTG-AGGA-ATTTAGA--AAAA--AATTCAGCA-CTTGTT
gi|103650 : TTTAAT-T----TC-A-TA-CAGGGGG-TA------------TT--GCATGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-AAAA-G-A---CT--TT-T-TT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTG-TGGA-A-TTAAAT-AAAAC-AATTATGTA-CTTG
gi|103651 : TTTAAT-TGATATC-A-TA-C-----A-TG------------TT--GTACGTT-TAA-A-T-T-ATC-TGT-A-A-------AAA-G-A----T--TT-TTTT-C-ATG--ATATG-CAA-AA-A-TGC-A------A--------AGAT-AAAAC-AATTCTGCA-CTTGTT
gi|103652 : TTTA-C-TGATATC-A-TA-C-----G-TG------------TT---CAGATT-AAA-A-A-T-ATC-TGT-A-AA-T-T-TAAAAG-A---TT--TT-TTTT-C-ATG--AATTG-CAA-TA-A-TG--A-CTTG-AGGA-A-T--AAT-AAAA--AATTCAGCA-CT
gi|103653 : TTTAACATG-TATCCA-TA-C-----G-GG------------TAAGGCACGTT-AAA-A-T-TTATC-TGTAA-A--T-T-T--A-G-A---TT--TT-TTTT-CAATG--AAATG-C-A-T--A-TGC-A-CTTG-AGGA-A-TTATA--AAAAC-AATTCAGCAGATTGTT
gi|103654 : TTTAAT-TGATATC-A-GA-G-----T-TG------------T---GC-CGTT-AAA---T-T-GTC-TGT-A-A--TAT-TAAA-G-A---TT--TT-TTTT---ATG--ATATG-C-A-TA-A-TGC-A-CTTG-AGG--A-TTAAAT-AAA
gi|103655 : TTTAAC-TGATAAC-A-TA-C-----GTTG------------TA--GCCAGTTCAAA-A-T-TAATCTTGT-ACA-------AAA-G-AT--TT--TT-TTTT-C-ATGAAAAATG-CAA-AA-A-GCC-ATCTTG-AGGATA-TTAGAT--AAAC-AATTCAGCA--TTGT
gi|103656 : TAAT-TGATAAC-A-CA-C-----G----------------------------AA-A-T-T-ATC-TGT-A-AA-T-T-TAAA-G-G---TT--TT-TTT----ATG--ATATG-CAA-TG-A-TGC-A-CTTG-AAGA-ATTTAAAT-AAAAC-AATTCTGCA-CTTGTT
gi|103657 : AAT-TGATATC-A-TA-C-----G-TG------------TT--ACACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--AT-TTTT-T-ATG--A-ATG-CAT-TA-A-TG--A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCT-CTTGTT
gi|103658 : AAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-A-T-ATC-TCTAA-A--T-T-TAAA-G-AT--TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-A-GA-A-TTAGAT-AAAACAAATTCAGCACCTTGTT
gi|103659 : AAT-TCATATC-A-TAAC-----G-TG------------TA--G-ACGTT-AAATA-A-T-ATC-TGA-A-A--T-T-AAAA-G-A---TT--TTTTTTT-C-ATG--AAATG-CAA-CATA-TGC-A-CTTG-A-GA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103660 : AT-TGATATC-A-TA-C-----A-T-------------TA----ATTTA-AAA-A-T-T-ATCCTGT-A-A--A-T-TAAA-GGA---TT--TT-TTT----ATG--ATATG-CAA-TA-AATGT-A-CTCG-AGGA-A-TTAAAT-AAAGCAAAATCTGCA-CTTGTT
gi|103661 : C-A-CA-T-----A-TG------------TT--GCACGTT-GAA-A-T-A-ATC-TGT-A-AA-T-T-TAAA-G-A---AT--TT-TTTT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTA-AGGA-A-TTAAAT-GAAAT-AATTCTGCA-CTTGTT
gi|103662 : -A-TA-C-----GGTG------------TT--GCACGTG-AAA-A-T-T-ATC-TGT-A-A--A-T-TTAA-G-ACT-TT--TT-TTTT-A-ATG--ATATGACAA-TA-A-TAC-A-CTTA-AGGG-A-ATAAAT-AAAAC-AATTCTGCA-TTTGT
gi|103663 : ATG-CAA-TA-A-TGC-A-CTTG-GGGA-A-TTAGAT--AAAC-AATTCTGCA-CTTGTT
Alignments
lowQualScore : 1111111111111111 1 1111 111
lowQualScore : 2 1 1 1 44444 3 2222222222222222 1 1 1 1 3 3 1 1 4444 1 1 3 222 22 1 1 1 22 2 3 1 1 1 1 1 1 1 3 1 5 1 3
lowQualScore : . . . . ..... . ................ . . . . . . . . .... . . . ... .. . . . .. . . . . . . . . . . . . . .
lowQualScore : 1 9 9 9 88888 8 6666666666666666 9 9 9 9 8 8 4 9 8888 9 9 8 444 66 9 9 9 66 9 6 8 8 8 8 8 8 8 6 8 7 0 8
consensus : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
Reference ( family-780 ) : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
gi|103642 : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103643 : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GGACGTT-AAA-A-T-T-ATC-TGTAA-A--C-T-TAAA-G-ATT-TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TTC-A-CTTG-AAG--A-TGAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103644 : -TGATACC-A-TA-G-----G-TG------------CT--GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A----T--GT-TTTT-C-ACG--ATATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAAAT-AAAAC-AATTCCACA-CTTGTT
gi|103645 : tttgttTTTAAT-TGATATC-A-TA-C-----G-TGGTGTTGGTGGTGTT--GCGCGTT-AAA-AAT-T-ATC-TGT-A-AA-T-T-GAAA-G-A---TTATTT-TTTT-C-ATG--ATATG-CAA-TA-A-TAC-A-CTT--AAGA-A-TTA-AT-AAAAC-AATTCTGCA-CTTGTT
gi|103646 : TTTAAC-TGATATC-A-TA-C-----T-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-AAAT-TATAAA-GGA---TT--TT-TTTT-C-ATT--GAATGGCAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103647 : TTTAAT-TGATATC-A-TA-C-----G-TG------------TT--GACCGAA-CAA-A-T-T-ATC-TGT-A-AA-T-T-TACA-G-A---CT--TT-TTTT-C-TTG--ATATG-CAA-TA-A-TGC-A-CTTA-GGGA-A-TTAGAT-AAAAC-AATTCTGCA-ATT
gi|103648 : TTTAAC-TGATATC-AATA-C-----G-TG------------TAA-GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--TT-TTTTCC-ATG--AAATG-CAATTA-A-TGCAA-CTTGAAAGA-A-TTAGATAAAAACAAATTCAGCA-CTTGTT
gi|103649 : TTTAAC-TGATATC---TA-C-----G-TG------------TAA-GCACGTT-AAA-A-AAT-ATC-TGT-A-AA-T-T-TAAA-G-ATTTTT--TT-TTTT-C-ATG--AAATG-C----A-A-TGC-A-CTTG-AGGA-ATTTAGA--AAAA--AATTCAGCA-CTTGTT
gi|103650 : TTTAAT-T----TC-A-TA-CAGGGGG-TA------------TT--GCATGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-AAAA-G-A---CT--TT-T-TT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTG-TGGA-A-TTAAAT-AAAAC-AATTATGTA-CTTG
gi|103651 : TTTAAT-TGATATC-A-TA-C-----A-TG------------TT--GTACGTT-TAA-A-T-T-ATC-TGT-A-A-------AAA-G-A----T--TT-TTTT-C-ATG--ATATG-CAA-AA-A-TGC-A------A--------AGAT-AAAAC-AATTCTGCA-CTTGTT
gi|103652 : TTTA-C-TGATATC-A-TA-C-----G-TG------------TT---CAGATT-AAA-A-A-T-ATC-TGT-A-AA-T-T-TAAAAG-A---TT--TT-TTTT-C-ATG--AATTG-CAA-TA-A-TG--A-CTTG-AGGA-A-T--AAT-AAAA--AATTCAGCA-CT
gi|103653 : TTTAACATG-TATCCA-TA-C-----G-GG------------TAAGGCACGTT-AAA-A-T-TTATC-TGTAA-A--T-T-T--A-G-A---TT--TT-TTTT-CAATG--AAATG-C-A-T--A-TGC-A-CTTG-AGGA-A-TTATA--AAAAC-AATTCAGCAGATTGTT
gi|103654 : TTTAAT-TGATATC-A-GA-G-----T-TG------------T---GC-CGTT-AAA---T-T-GTC-TGT-A-A--TAT-TAAA-G-A---TT--TT-TTTT---ATG--ATATG-C-A-TA-A-TGC-A-CTTG-AGG--A-TTAAAT-AAA
gi|103655 : TTTAAC-TGATAAC-A-TA-C-----GTTG------------TA--GCCAGTTCAAA-A-T-TAATCTTGT-ACA-------AAA-G-AT--TT--TT-TTTT-C-ATGAAAAATG-CAA-AA-A-GCC-ATCTTG-AGGATA-TTAGAT--AAAC-AATTCAGCA--TTGT
gi|103656 : TAAT-TGATAAC-A-CA-C-----G----------------------------AA-A-T-T-ATC-TGT-A-AA-T-T-TAAA-G-G---TT--TT-TTT----ATG--ATATG-CAA-TG-A-TGC-A-CTTG-AAGA-ATTTAAAT-AAAAC-AATTCTGCA-CTTGTT
gi|103657 : AAT-TGATATC-A-TA-C-----G-TG------------TT--ACACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--AT-TTTT-T-ATG--A-ATG-CAT-TA-A-TG--A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCT-CTTGTT
gi|103658 : AAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-A-T-ATC-TCTAA-A--T-T-TAAA-G-AT--TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-A-GA-A-TTAGAT-AAAACAAATTCAGCACCTTGTT
gi|103659 : AAT-TCATATC-A-TAAC-----G-TG------------TA--G-ACGTT-AAATA-A-T-ATC-TGA-A-A--T-T-AAAA-G-A---TT--TTTTTTT-C-ATG--AAATG-CAA-CATA-TGC-A-CTTG-A-GA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103660 : AT-TGATATC-A-TA-C-----A-T-------------TA----ATTTA-AAA-A-T-T-ATCCTGT-A-A--A-T-TAAA-GGA---TT--TT-TTT----ATG--ATATG-CAA-TA-AATGT-A-CTCG-AGGA-A-TTAAAT-AAAGCAAAATCTGCA-CTTGTT
gi|103661 : C-A-CA-T-----A-TG------------TT--GCACGTT-GAA-A-T-A-ATC-TGT-A-AA-T-T-TAAA-G-A---AT--TT-TTTT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTA-AGGA-A-TTAAAT-GAAAT-AATTCTGCA-CTTGTT
gi|103662 : -A-TA-C-----GGTG------------TT--GCACGTG-AAA-A-T-T-ATC-TGT-A-A--A-T-TTAA-G-ACT-TT--TT-TTTT-A-ATG--ATATGACAA-TA-A-TAC-A-CTTA-AGGG-A-ATAAAT-AAAAC-AATTCTGCA-TTTGT
gi|103663 : ATG-CAA-TA-A-TGC-A-CTTG-GGGA-A-TTAGAT--AAAC-AATTCTGCA-CTTGTT
blockSeqs : A C A A AGGGG T GTGTTGGTGGTGTT C T A A T T A C AAT A A G TTT AT T C A AA A G T T A A T A T T A A A G
blockSeqs : . . . . . G TAAG . . . . A C A . AT . . G TT . . . . . T A . . . . . . . T . A C C
blockSeqs : . . . . . . TAA . . . . . . A . AT . . . CT . . . . . T . . . . . . . . . . A T .
blockSeqs : . . . . . . TAA . . . . . . A . AT . . . T . . . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . TA . . . . . . A . AT . . . T . . . . . T . . . . . . . . . . . T .
blockSeqs : . . . . . . CT . . . . . . A . TA . . . . . . . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . TA . . . . . . . . AT . . . . . . . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . TT . . . . . . . . AT . . . . . . . . . T . . . . . . . . . . . T .
blockSeqs : . . . . . . TT . . . . . . . . C . . . . . . . . . T . . . . . . . . . . . T .
blockSeqs : . . . . . . TT . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . TT . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . TA . . . . . . . . T . . . . . . . . . T . . . . . . . . . . . A .
blockSeqs : . . . . . . TT . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . T .
blockSeqs : . . . . . . TA . . . . . . . . T . . . . . . . . . T . . . . . . . . . . . A .
blockSeqs : . . . . . . TA . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . TA . . . . . . . . T . . . . . . . . . A . . . . . . . . . . . A .
blockSeqs : . . . . . . TT . . . . . . . . A . . . . . . . . . T . . . . . . . . . . . T .
blockSeqs : . . . . . . TT . . . . . . . . A . . . . . . . . . T . . . . . . . . . . . T .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
finalCons : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
Alignments
lowQualScore : 1111111111111111 1 1111 111
lowQualScore : 2 1 1 1 44444 3 2222222222222222 1 1 1 1 3 3 1 1 4444 1 1 3 222 22 1 1 1 22 2 3 1 1 1 1 1 1 1 3 1 5 1 3
lowQualScore : . . . . ..... . ................ . . . . . . . . .... . . . ... .. . . . .. . . . . . . . . . . . . . .
lowQualScore : 1 9 9 9 88888 8 6666666666666666 9 9 9 9 8 8 4 9 8888 9 9 8 444 66 9 9 9 66 9 6 8 8 8 8 8 8 8 6 8 7 0 8
consensus : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
Reference ( family-780 ) : TTTAAC-TGATATC-A-TA-C-----G-TG------------TN--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--ANATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCNGCA-CTTGTT
gi|103642 : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-TAAA-G-A---TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103643 : TTTAAC-TGATATC-A-TA-C-----G-TG------------TA--GGACGTT-AAA-A-T-T-ATC-TGTAA-A--C-T-TAAA-G-ATT-TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TTC-A-CTTG-AAG--A-TGAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103644 : -TGATACC-A-TA-G-----G-TG------------CT--GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A----T--GT-TTTT-C-ACG--ATATG-CAA-TA-A-TGC-A-CTTG-AGGA-A-TTAAAT-AAAAC-AATTCCACA-CTTGTT
gi|103645 : tttgttTTTAAT-TGATATC-A-TA-C-----G-TGGTGTTGGTGGTGTT--GCGCGTT-AAA-AAT-T-ATC-TGT-A-AA-T-T-GAAA-G-A---TTATTT-TTTT-C-ATG--ATATG-CAA-TA-A-TAC-A-CTT--AAGA-A-TTA-AT-AAAAC-AATTCTGCA-CTTGTT
gi|103646 : TTTAAC-TGATATC-A-TA-C-----T-TG------------TA--GCACGTT-AAA-A-T-T-ATC-TGT-A-AAAT-TATAAA-GGA---TT--TT-TTTT-C-ATT--GAATGGCAA-TA-A-TGC-A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103647 : TTTAAT-TGATATC-A-TA-C-----G-TG------------TT--GACCGAA-CAA-A-T-T-ATC-TGT-A-AA-T-T-TACA-G-A---CT--TT-TTTT-C-TTG--ATATG-CAA-TA-A-TGC-A-CTTA-GGGA-A-TTAGAT-AAAAC-AATTCTGCA-ATT
gi|103648 : TTTAAC-TGATATC-AATA-C-----G-TG------------TAA-GCACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--TT-TTTTCC-ATG--AAATG-CAATTA-A-TGCAA-CTTGAAAGA-A-TTAGATAAAAACAAATTCAGCA-CTTGTT
gi|103649 : TTTAAC-TGATATC---TA-C-----G-TG------------TAA-GCACGTT-AAA-A-AAT-ATC-TGT-A-AA-T-T-TAAA-G-ATTTTT--TT-TTTT-C-ATG--AAATG-C----A-A-TGC-A-CTTG-AGGA-ATTTAGA--AAAA--AATTCAGCA-CTTGTT
gi|103650 : TTTAAT-T----TC-A-TA-CAGGGGG-TA------------TT--GCATGTT-AAA-A-T-T-ATC-TGT-A-A--T-T-AAAA-G-A---CT--TT-T-TT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTG-TGGA-A-TTAAAT-AAAAC-AATTATGTA-CTTG
gi|103651 : TTTAAT-TGATATC-A-TA-C-----A-TG------------TT--GTACGTT-TAA-A-T-T-ATC-TGT-A-A-------AAA-G-A----T--TT-TTTT-C-ATG--ATATG-CAA-AA-A-TGC-A------A--------AGAT-AAAAC-AATTCTGCA-CTTGTT
gi|103652 : TTTA-C-TGATATC-A-TA-C-----G-TG------------TT---CAGATT-AAA-A-A-T-ATC-TGT-A-AA-T-T-TAAAAG-A---TT--TT-TTTT-C-ATG--AATTG-CAA-TA-A-TG--A-CTTG-AGGA-A-T--AAT-AAAA--AATTCAGCA-CT
gi|103653 : TTTAACATG-TATCCA-TA-C-----G-GG------------TAAGGCACGTT-AAA-A-T-TTATC-TGTAA-A--T-T-T--A-G-A---TT--TT-TTTT-CAATG--AAATG-C-A-T--A-TGC-A-CTTG-AGGA-A-TTATA--AAAAC-AATTCAGCAGATTGTT
gi|103654 : TTTAAT-TGATATC-A-GA-G-----T-TG------------T---GC-CGTT-AAA---T-T-GTC-TGT-A-A--TAT-TAAA-G-A---TT--TT-TTTT---ATG--ATATG-C-A-TA-A-TGC-A-CTTG-AGG--A-TTAAAT-AAA
gi|103655 : TTTAAC-TGATAAC-A-TA-C-----GTTG------------TA--GCCAGTTCAAA-A-T-TAATCTTGT-ACA-------AAA-G-AT--TT--TT-TTTT-C-ATGAAAAATG-CAA-AA-A-GCC-ATCTTG-AGGATA-TTAGAT--AAAC-AATTCAGCA--TTGT
gi|103656 : TAAT-TGATAAC-A-CA-C-----G----------------------------AA-A-T-T-ATC-TGT-A-AA-T-T-TAAA-G-G---TT--TT-TTT----ATG--ATATG-CAA-TG-A-TGC-A-CTTG-AAGA-ATTTAAAT-AAAAC-AATTCTGCA-CTTGTT
gi|103657 : AAT-TGATATC-A-TA-C-----G-TG------------TT--ACACGTT-AAA-A-T-T-ATC-TGTAA-A--T-T-TAAA-G-A---TT--AT-TTTT-T-ATG--A-ATG-CAT-TA-A-TG--A-CTTG-AGGA-A-TTAGAT-AAAAC-AATTCAGCT-CTTGTT
gi|103658 : AAC-TGATATC-A-TA-C-----G-TG------------TA--GCACGTT-AAA-A-A-T-ATC-TCTAA-A--T-T-TAAA-G-AT--TT--TT-TTTT-C-ATG--AAATG-CAA-TA-A-TGC-A-CTTG-A-GA-A-TTAGAT-AAAACAAATTCAGCACCTTGTT
gi|103659 : AAT-TCATATC-A-TAAC-----G-TG------------TA--G-ACGTT-AAATA-A-T-ATC-TGA-A-A--T-T-AAAA-G-A---TT--TTTTTTT-C-ATG--AAATG-CAA-CATA-TGC-A-CTTG-A-GA-A-TTAGAT-AAAAC-AATTCAGCA-CTTGTT
gi|103660 : AT-TGATATC-A-TA-C-----A-T-------------TA----ATTTA-AAA-A-T-T-ATCCTGT-A-A--A-T-TAAA-GGA---TT--TT-TTT----ATG--ATATG-CAA-TA-AATGT-A-CTCG-AGGA-A-TTAAAT-AAAGCAAAATCTGCA-CTTGTT
gi|103661 : C-A-CA-T-----A-TG------------TT--GCACGTT-GAA-A-T-A-ATC-TGT-A-AA-T-T-TAAA-G-A---AT--TT-TTTT-C-ATG--ATATG-CAA-TA-A-TGC-A-CTTA-AGGA-A-TTAAAT-GAAAT-AATTCTGCA-CTTGTT
gi|103662 : -A-TA-C-----GGTG------------TT--GCACGTG-AAA-A-T-T-ATC-TGT-A-A--A-T-TTAA-G-ACT-TT--TT-TTTT-A-ATG--ATATGACAA-TA-A-TAC-A-CTTA-AGGG-A-ATAAAT-AAAAC-AATTCTGCA-TTTGT
gi|103663 : ATG-CAA-TA-A-TGC-A-CTTG-GGGA-A-TTAGAT--AAAC-AATTCTGCA-CTTGTT