lowQualScore : 222 11 22222222222222 11 111 1 111 1 1111
lowQualScore : 4444 22 2 2 2 2 2 2 2 77 1 1 6 6 6 000 6 22 6 11111111111111 33 6 6 6 99 6 99999 5 6 000 77 1 000 5 5 1 5 4 2222 5
lowQualScore : .... .. . . . . . . . .. . . . . . ... . .. . .............. .. . . . .. . ..... . . ... .. . ... . . . . . .... .
lowQualScore : 2222 88 0 1 1 1 4 5 5 99 4 9 7 7 7 000 7 77 7 55555555555555 33 7 7 7 22 7 33333 7 0 000 99 4 000 7 7 4 7 3 1111 7
consensus : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAA--GCC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TATC--G--C-AGTGCAT---AAAGTAA--TG-CTTTG---ACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
Reference ( gi|24690 ) : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAA-GGCC-T-GA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TATT--G--C-AGTACAT---AAAGTAA--TG-TTTTG---ACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24689 : CACAGGGGCTGAGC----ACGTT--TTGATCCGAA-T-CTC-CT-CATAA-CC-AT-AAACAAAGAAGGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAA-CGCCTT-AA-AA------A--A--TAAAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TATT--G--C-AGTGCAT---AAAGTAA--TG-CTTTG---AATTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24691 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTCTCT-CGTAA-CC-ATAAAATAAAGAAAGGGG--TCGAACTCC-A-CAAGATGAAAAACTACC-CACT-CGCT-TCAAA-GGCC-TAAA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-TAAA--ACTACA-TATC--G--C-AGTGCAT---AAAGTAA--TGCTTTTG---ACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24692 : CACAGGGACTAAGC----ACGTT--TGTATGCGAA-AACTC-CT-CGTAA-C--AT-AAATAA-GAAAGGGGGTTCGAACTCCTACCAAGACGAAAAACTACC-CACT-CACT-TCAAA-CGCC-T-AA-AA------A--AATT-CAAAAA-CACGTTTC-AAAATGCG-T-AA--TCTACA-TATC--G--C-AGTGCAT---AAAGTAA--TG-CTTTG---GACTC-AT-GC--T-G-CGAATTT----CAAAGTCACAGGGTCTT
gi|24694 : CACAGGG-TTAAGC----A-GTT--TTGATCC-AA-C-CTC-CT-CGTAA-AC-CT-AAATAGAGAAA-GGG--TCGAACT-CTACCAAA--GAATAACTACC---CC-CGC--TCAA----CC-T-AATAA------AATA--T-CACAAA--GCGTTTC-AAAATGCGCT-AA--TCTACA-TATC--GTCC-AGTGC-T----AAGT-A--TG-TTT-----ACTT--ATAGCTAT-ACCGA--TT----T-AAAT--CAAGGTCTT
gi|24695 : CACGGGGGCTAAGC----ACGTTTGTTG--CCGAG-A-CTC-CT-CATAA-CC-AT-AGATAAAGAAAGGGG--TCGAACTCCTACGAAGACTAACAA
gi|24696 : CACAGGGGCTAAGC----GCGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAAT
gi|24698 : CACAGGGACTAAGC----ACGTT--TTGATCCAAA-A-CTC-CT-CGTAA-CC-AT-AAATA
gi|24700 : CACAGGGGCTTAG-----ACGTT--TTGATCCGAA-A-CTC-CTTCGTAA-CC-AT-AAATAAAGAAGGG
gi|24701 : CACAGGGGCTAAGC----AAGTT--TTGATCCGAA-A-CTC-AT-CGTAA-CC-AT-AAATAA
gi|24702 : CAAAGGGATAAAGC----CCGTT--TTGATCCGAA-A-CTC-CT-CGAAA-CC-AT-AAATAAGGA
gi|24699 : CACAGGGGCTAAGC----ACATT--TTGATCCAAG-A-CTC-CT-TGTAA-TG-AG-AAATA
gi|24697 : CACAGGGTCTAAGC----ATGTT--TTGATCCGAA-A-ATC-CT-CTTAA-CC-AT-
gi|24704 : CACAGGGGCTAAGCTAGCACGTT--TTGATCCAAA-A-CTC-CT-CGT
gi|24705 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-
gi|24693 : CACAGGGGCTAAGC----ACGTT--TTGATTCGAA-A-
gi|24706 : CACAGGGGTTAAGC----ACGTT--GTGATCCAAA-A-CTC-TT-
gi|24703 : CAAAGGGATAAAGC----CCATT--TTGATCCGAATA-CTC-CT-CGAAA-CCGAT-GAATAA
gi|24707 : GGGCTAAGC----GCGTT--TTGATCCGAA-A-TTC-C---GTAA-CC-AT-AAATAAAG----GGG--TCGAACTCTGGCCAAGACAAATCACTACT-CACT-CGCT-TCAAA---CG-T-AA-AAAAAAATA--A--T-CAAAAA--GCGTTTA-AAAATGCG-T-AT--CCTACAGGATT--C--C-A-TGCAT---AAATCAA--TG-TCTTA---ACTTC-AT-GC-AT-G-CGAATTT----C-AAGCCACAGGGTCTT
gi|24708 : GCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-
gi|24709 : AAGC----ACGTT--TTGACCCGAA-A-CTC-CT-CGTAA-CG-AT-AAATAAAGAAGG
gi|24710 : C-CT-CGTAAACC-AT-AAATAAAGAAAGGG---TCGAACTCCTACCAAGACGAAAAACTGCCGCACTCCACTGTCAAACGCCC-T-AA-AA------A--A--A-CAAAAACCGCGTTTCAAAAATGCG-T-AATCTCTACA-TATTCCG--CAAGTGCATACAAAGGTAAATCGCTTTTGGGAACTTCAAT-ACGATGGCCGAACTTTCTCC-AAGTCACAGGGTCTT
gi|24711 : --G--C-AGTGCAT---AAAGTAA--TG-CTTTG---ACTTC-AT-GT-AT-GCCGAATTT----C-AAGGCACAGGGTCTT
Alignments
lowQualScore : 333 111111 11 1111 1 1111
lowQualScore : 4444 22 1 2 2 2 2 2 2 66 0 0 5 5 5 555 5 5 5 666666 77 8888 00 5 5 5 77 5 77 66 5 888 66 5 0000 5 5 0 5 2 0000 5
lowQualScore : .... .. . . . . . . . .. . . . . . ... . . . ...... .. .... .. . . . .. . .. .. . ... .. . .... . . . . . .... .
lowQualScore : 0000 66 9 0 0 0 2 4 4 99 1 5 7 7 7 000 7 7 7 444444 99 3333 00 7 7 7 99 7 99 99 0 888 99 0 6666 0 0 0 0 5 6666 0
consensus : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
Reference ( family-768 ) : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAA-G-CC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24689 : CACAGGGGCTGAGC----ACGTT--TTGATCCGAA-T-CTC-CT-CATAA-CC-AT-AAACAAAGAAGGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CCTT-AA-AA------A--A--TAAAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--TG--C-AGTGCAT---AAAGTAA--TGC-TTT----GAATTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24690 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAAGG-CC-T-GA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--TG--C-AGTACAT---AAAGTAA--TGT-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24691 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTCTCT-CGTAA-CC-ATAAAATAAAGAAAGGGG--TCGAACTCC-A-CAAGATGAAAAACTACC-CACT-CGCT-TCAAAGG-CC-TAAA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-TAAA--ACTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGCTTTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24692 : CACAGGGACTAAGC----ACGTT--TGTATGCGAA-AACTC-CT-CGTAA-C--AT-AAATAA-GAAAGGGGGTTCGAACTCCTACCAAGACGAAAAACTACC-CACT-CACT-TCAAACG-CC-T-AA-AA------A--AATT-CAAAAA-CACGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GGACTC-AT-GC--T-G-CGAATTT----CAAAGTCACAGGGTCTT
gi|24693 : CACAGGGGCTAAGC----ACGTT--TTGATTCGAA-A-
gi|24694 : CACAGGG-TTAAGC----A-GTT--TTGATCC-AA-C-CTC-CT-CGTAA-AC-CT-AAATAGAGAAA-GGG--TCGAACT-CTACCAAA--GAATAACTACC---CC-CGC--TCAA----CC-T-AATAA------AATA--T-CACAAA--GCGTTTC-AAAATGCGCT-AA--TCTACA-TAT--CGTCC-AGTGC-T----AAGT-A--TGT-TT------ACTT--ATAGCTAT-ACCGA--TT----T-AAAT--CAAGGTCTT
gi|24695 : CACGGGGGCTAAGC----ACGTTTGTTG--CCGAG-A-CTC-CT-CATAA-CC-AT-AGATAAAGAAAGGGG--TCGAACTCCTACGAAGACTAACAA
gi|24696 : CACAGGGGCTAAGC----GCGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAAT
gi|24697 : CACAGGGTCTAAGC----ATGTT--TTGATCCGAA-A-ATC-CT-CTTAA-CC-AT-
gi|24698 : CACAGGGACTAAGC----ACGTT--TTGATCCAAA-A-CTC-CT-CGTAA-CC-AT-AAATA
gi|24699 : CACAGGGGCTAAGC----ACATT--TTGATCCAAG-A-CTC-CT-TGTAA-TG-AG-AAATA
gi|24700 : CACAGGGGCTTAG-----ACGTT--TTGATCCGAA-A-CTC-CTTCGTAA-CC-AT-AAATAAAGAAGGG
gi|24701 : CACAGGGGCTAAGC----AAGTT--TTGATCCGAA-A-CTC-AT-CGTAA-CC-AT-AAATAA
gi|24702 : CAAAGGGATAAAGC----CCGTT--TTGATCCGAA-A-CTC-CT-CGAAA-CC-AT-AAATAAGGA
gi|24703 : CAAAGGGATAAAGC----CCATT--TTGATCCGAATA-CTC-CT-CGAAA-CCGAT-GAATAA
gi|24704 : CACAGGGGCTAAGCTAGCACGTT--TTGATCCAAA-A-CTC-CT-CGT
gi|24705 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-
gi|24706 : CACAGGGGTTAAGC----ACGTT--GTGATCCAAA-A-CTC-TT-
gi|24707 : GGGCTAAGC----GCGTT--TTGATCCGAA-A-TTC-C---GTAA-CC-AT-AAATAAAG----GGG--TCGAACTCTGGCCAAGACAAATCACTACT-CACT-CGCT-TCAAA---CG-T-AA-AAAAAAATA--A--T-CAAAAA--GCGTTTA-AAAATGCG-T-AT--CCTACAGGAT--TC--C-A-TGCAT---AAATCAA--TGT-CTT----AACTTC-AT-GC-AT-G-CGAATTT----C-AAGCCACAGGGTCTT
gi|24708 : GCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-
gi|24709 : AAGC----ACGTT--TTGACCCGAA-A-CTC-CT-CGTAA-CG-AT-AAATAAAGAAGG
gi|24710 : C-CT-CGTAAACC-AT-AAATAAAGAAAGGG---TCGAACTCCTACCAAGACGAAAAACTGCCGCACTCCACTGTCAAACGCCC-T-AA-AA------A--A--A-CAAAAACCGCGTTTCAAAAATGCG-T-AATCTCTACA-TATTCCG--CAAGTGCATACAAAGGTAAATCGC-TTTTGGGAACTTCAAT-ACGATGGCCGAACTTTCTCC-AAGTCACAGGGTCTT
gi|24711 : G--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GT-AT-GCCGAATTT----C-AAGGCACAGGGTCTT
Alignments
lowQualScore : 111111 11 1111 1 1111
lowQualScore : 4444 22 1 2 2 2 2 2 2 66 0 0 5 5 5 0 5 5 5 5 666666 77 8888 00 5 5 5 77 5 77 66 5 888 66 5 0000 5 5 0 5 2 0000 5
lowQualScore : .... .. . . . . . . . .. . . . . . . . . . . ...... .. .... .. . . . .. . .. .. . ... .. . .... . . . . . .... .
lowQualScore : 0000 66 9 0 0 0 2 4 4 99 1 5 7 7 7 7 7 7 7 7 444444 99 3333 00 7 7 7 99 7 99 99 0 888 99 0 6666 0 0 0 0 5 6666 0
consensus : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
Reference ( family-768 ) : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24689 : CACAGGGGCTGAGC----ACGTT--TTGATCCGAA-T-CTC-CT-CATAA-CC-AT-AAACAAAGAAGGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CCTT-AA-AA------A--A--TAAAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--TG--C-AGTGCAT---AAAGTAA--TGC-TTT----GAATTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24690 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAAGG-CC-T-GA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--TG--C-AGTACAT---AAAGTAA--TGT-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24691 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTCTCT-CGTAA-CC-ATAAAATAAAGAAAGGGG--TCGAACTCC-A-CAAGATGAAAAACTACC-CACT-CGCT-TCAAAGG-CC-TAAA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-TAAA--ACTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGCTTTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24692 : CACAGGGACTAAGC----ACGTT--TGTATGCGAA-AACTC-CT-CGTAA-C--AT-AAATAA-GAAAGGGGGTTCGAACTCCTACCAAGACGAAAAACTACC-CACT-CACT-TCAAACG-CC-T-AA-AA------A--AATT-CAAAAA-CACGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GGACTC-AT-GC--T-G-CGAATTT----CAAAGTCACAGGGTCTT
gi|24693 : CACAGGGGCTAAGC----ACGTT--TTGATTCGAA-A-
gi|24694 : CACAGGG-TTAAGC----A-GTT--TTGATCC-AA-C-CTC-CT-CGTAA-AC-CT-AAATAGAGAAA-GGG--TCGAACT-CTACCAAA--GAATAACTACC---CC-CGC--TCAA----CC-T-AATAA------AATA--T-CACAAA--GCGTTTC-AAAATGCGCT-AA--TCTACA-TAT--CGTCC-AGTGC-T----AAGT-A--TGT-TT------ACTT--ATAGCTAT-ACCGA--TT----T-AAAT--CAAGGTCTT
gi|24695 : CACGGGGGCTAAGC----ACGTTTGTTG--CCGAG-A-CTC-CT-CATAA-CC-AT-AGATAAAGAAAGGGG--TCGAACTCCTACGAAGACTAACAA
gi|24696 : CACAGGGGCTAAGC----GCGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAAT
gi|24697 : CACAGGGTCTAAGC----ATGTT--TTGATCCGAA-A-ATC-CT-CTTAA-CC-AT-
gi|24698 : CACAGGGACTAAGC----ACGTT--TTGATCCAAA-A-CTC-CT-CGTAA-CC-AT-AAATA
gi|24699 : CACAGGGGCTAAGC----ACATT--TTGATCCAAG-A-CTC-CT-TGTAA-TG-AG-AAATA
gi|24700 : CACAGGGGCTTAG-----ACGTT--TTGATCCGAA-A-CTC-CTTCGTAA-CC-AT-AAATAAAGAAGGG
gi|24701 : CACAGGGGCTAAGC----AAGTT--TTGATCCGAA-A-CTC-AT-CGTAA-CC-AT-AAATAA
gi|24702 : CAAAGGGATAAAGC----CCGTT--TTGATCCGAA-A-CTC-CT-CGAAA-CC-AT-AAATAAGGA
gi|24703 : CAAAGGGATAAAGC----CCATT--TTGATCCGAATA-CTC-CT-CGAAA-CCGAT-GAATAA
gi|24704 : CACAGGGGCTAAGCTAGCACGTT--TTGATCCAAA-A-CTC-CT-CGT
gi|24705 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-
gi|24706 : CACAGGGGTTAAGC----ACGTT--GTGATCCAAA-A-CTC-TT-
gi|24707 : GGGCTAAGC----GCGTT--TTGATCCGAA-A-TTC-C---GTAA-CC-AT-AAATAAAG----GGG--TCGAACTCTGGCCAAGACAAATCACTACT-CACT-CGCT-TCAAACG----T-AA-AAAAAAATA--A--T-CAAAAA--GCGTTTA-AAAATGCG-T-AT--CCTACAGGAT--TC--C-A-TGCAT---AAATCAA--TGT-CTT----AACTTC-AT-GC-AT-G-CGAATTT----C-AAGCCACAGGGTCTT
gi|24708 : GCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-
gi|24709 : AAGC----ACGTT--TTGACCCGAA-A-CTC-CT-CGTAA-CG-AT-AAATAAAGAAGG
gi|24710 : C-CT-CGTAAACC-AT-AAATAAAGAAAGGG---TCGAACTCCTACCAAGACGAAAAACTGCCGCACTCCACTGTCAAACGCCC-T-AA-AA------A--A--A-CAAAAACCGCGTTTCAAAAATGCG-T-AATCTCTACA-TATTCCG--CAAGTGCATACAAAGGTAAATCGC-TTTTGGGAACTTCAAT-ACGATGGCCGAACTTTCTCC-AAGTCACAGGGTCTT
gi|24711 : G--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GT-AT-GCCGAATTT----C-AAGGCACAGGGTCTT
blockSeqs : TAGC TG T A T T A G A GT G C G C . A T AAAAAT AT ATT CC A C A TC G TC TC A ACA AT T TGGG A A T G C TCTC A
blockSeqs : . . . . . . . . . . . . . . . . . . . T C . . . . . . . . . . . . . . G . C . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T C . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T C . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : T***
originalCons : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
finalCons : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CC-T-AA-AA------A--AT---CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
Alignments
lowQualScore : 111111 11 1111 1 1111
lowQualScore : 4444 22 1 2 2 2 2 2 2 66 0 0 5 5 5 0 5 5 5 5 666666 77 8888 00 5 5 5 77 5 77 66 5 888 66 5 0000 5 5 0 5 2 0000 5
lowQualScore : .... .. . . . . . . . .. . . . . . . . . . . ...... .. .... .. . . . .. . .. .. . ... .. . .... . . . . . .... .
lowQualScore : 0000 66 9 0 0 0 2 4 4 99 1 5 7 7 7 7 7 7 7 7 444444 99 3333 00 7 7 7 99 7 99 99 0 888 99 0 6666 0 0 0 0 5 6666 0
consensus : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
Reference ( family-768 ) : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CC-T-AA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24689 : CACAGGGGCTGAGC----ACGTT--TTGATCCGAA-T-CTC-CT-CATAA-CC-AT-AAACAAAGAAGGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAACG-CCTT-AA-AA------A--A--TAAAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--TG--C-AGTGCAT---AAAGTAA--TGC-TTT----GAATTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24690 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAATAAAGAAAGGGG--TCGAACTCCTACCAAGACGAAAAACTACC-CACT-CGCT-TCAAAGG-CC-T-GA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-T-AA--TCTACA-TAT--TG--C-AGTACAT---AAAGTAA--TGT-TTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24691 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-A-CTCTCT-CGTAA-CC-ATAAAATAAAGAAAGGGG--TCGAACTCC-A-CAAGATGAAAAACTACC-CACT-CGCT-TCAAAGG-CC-TAAA-AA------A--A--T-CAAAAA-CGCGTTTC-AAAATGCG-TAAA--ACTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGCTTTT----GACTTC-AT-GC-AT-GCCGAATTT----C-AAGTCACAGGGTCTT
gi|24692 : CACAGGGACTAAGC----ACGTT--TGTATGCGAA-AACTC-CT-CGTAA-C--AT-AAATAA-GAAAGGGGGTTCGAACTCCTACCAAGACGAAAAACTACC-CACT-CACT-TCAAACG-CC-T-AA-AA------A--AATT-CAAAAA-CACGTTTC-AAAATGCG-T-AA--TCTACA-TAT--CG--C-AGTGCAT---AAAGTAA--TGC-TTT----GGACTC-AT-GC--T-G-CGAATTT----CAAAGTCACAGGGTCTT
gi|24693 : CACAGGGGCTAAGC----ACGTT--TTGATTCGAA-A-
gi|24694 : CACAGGG-TTAAGC----A-GTT--TTGATCC-AA-C-CTC-CT-CGTAA-AC-CT-AAATAGAGAAA-GGG--TCGAACT-CTACCAAA--GAATAACTACC---CC-CGC--TCAA----CC-T-AATAA------AATA--T-CACAAA--GCGTTTC-AAAATGCGCT-AA--TCTACA-TAT--CGTCC-AGTGC-T----AAGT-A--TGT-TT------ACTT--ATAGCTAT-ACCGA--TT----T-AAAT--CAAGGTCTT
gi|24695 : CACGGGGGCTAAGC----ACGTTTGTTG--CCGAG-A-CTC-CT-CATAA-CC-AT-AGATAAAGAAAGGGG--TCGAACTCCTACGAAGACTAACAA
gi|24696 : CACAGGGGCTAAGC----GCGTT--TTGATCCGAA-A-CTC-CT-CGTAA-CC-AT-AAAT
gi|24697 : CACAGGGTCTAAGC----ATGTT--TTGATCCGAA-A-ATC-CT-CTTAA-CC-AT-
gi|24698 : CACAGGGACTAAGC----ACGTT--TTGATCCAAA-A-CTC-CT-CGTAA-CC-AT-AAATA
gi|24699 : CACAGGGGCTAAGC----ACATT--TTGATCCAAG-A-CTC-CT-TGTAA-TG-AG-AAATA
gi|24700 : CACAGGGGCTTAG-----ACGTT--TTGATCCGAA-A-CTC-CTTCGTAA-CC-AT-AAATAAAGAAGGG
gi|24701 : CACAGGGGCTAAGC----AAGTT--TTGATCCGAA-A-CTC-AT-CGTAA-CC-AT-AAATAA
gi|24702 : CAAAGGGATAAAGC----CCGTT--TTGATCCGAA-A-CTC-CT-CGAAA-CC-AT-AAATAAGGA
gi|24703 : CAAAGGGATAAAGC----CCATT--TTGATCCGAATA-CTC-CT-CGAAA-CCGAT-GAATAA
gi|24704 : CACAGGGGCTAAGCTAGCACGTT--TTGATCCAAA-A-CTC-CT-CGT
gi|24705 : CACAGGGGCTAAGC----ACGTT--TTGATCCGAA-
gi|24706 : CACAGGGGTTAAGC----ACGTT--GTGATCCAAA-A-CTC-TT-
gi|24707 : GGGCTAAGC----GCGTT--TTGATCCGAA-A-TTC-C---GTAA-CC-AT-AAATAAAG----GGG--TCGAACTCTGGCCAAGACAAATCACTACT-CACT-CGCT-TCAAACG----T-AA-AAAAAAATA--A--T-CAAAAA--GCGTTTA-AAAATGCG-T-AT--CCTACAGGAT--TC--C-A-TGCAT---AAATCAA--TGT-CTT----AACTTC-AT-GC-AT-G-CGAATTT----C-AAGCCACAGGGTCTT
gi|24708 : GCTAAGC----ACGTT--TTGATCCGAA-A-CTC-CT-CGTAA-
gi|24709 : AAGC----ACGTT--TTGACCCGAA-A-CTC-CT-CGTAA-CG-AT-AAATAAAGAAGG
gi|24710 : C-CT-CGTAAACC-AT-AAATAAAGAAAGGG---TCGAACTCCTACCAAGACGAAAAACTGCCGCACTCCACTGTCAAACGCCC-T-AA-AA------A--A--A-CAAAAACCGCGTTTCAAAAATGCG-T-AATCTCTACA-TATTCCG--CAAGTGCATACAAAGGTAAATCGC-TTTTGGGAACTTCAAT-ACGATGGCCGAACTTTCTCC-AAGTCACAGGGTCTT
gi|24711 : G--C-AGTGCAT---AAAGTAA--TGC-TTT----GACTTC-AT-GT-AT-GCCGAATTT----C-AAGGCACAGGGTCTT