lowQualScore : 1111111 1
lowQualScore : 2 2 0000000 99999 2 0 2 2 2 2 1 1 44 1 2 6
lowQualScore : . . ....... ..... . . . . . . . . .. . . .
lowQualScore : 9 9 0000000 33333 7 3 4 4 4 0 9 9 55 9 0 0
consensus : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
Reference ( gi|117334 ) : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGTCGAGTG
gi|117336 : GCAGCC-AT-CTT-C-----TCAA-----T-GACACTTTACGT-CATA-CA-GCCGAGGTCAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCAAGT
gi|117335 : GCAGCC-AT-CTTACATGTATCAA-----T-GGCGGTTTACGT-CATA-CA-GCCGAAGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117339 : GCAACC-AT-CTT-C-----TCAA-----T-GGCGATTTACGT-CAAA-TA-GCCGAGGTAAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117337 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGGTTTACGT-CACA-TA-GCCAAGGTTAGTATG-AGGTAC-GAA-TG--TTCCGA-GA-TTGGCCGA
gi|117338 : GCAGCC-AT-CTT-G-----TCAA-----T-GACGGTTTACGG-CATA-CA-GCCGAGATTATTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117341 : GCAGCC-AT-CTT-C-----ACAA-----T-GACGCTTTACCT-CAAA-CA-GCCGAGGTCAGTATA-AGGTAC-GAA-TA--CCCCGA-TG-TTGGCCGAGTG
gi|117342 : GCAGCC-AT-CTT-------TCA------T-GGCGATTTACGT--ATA-CA-GCCAACGTTAATATG-AGCTACGGAA-TA--TTCCGAGGG-TTGGCCGAGTG
gi|117340 : GCAACC-AT-CTT-C-----TCAA-----TTGGCGATTTACGT-CAAAATA-GC-GAGGTAAATATG-AGGTAC-GAA-TAACTTCCGA-GGTTTGGCCGACTG
gi|117343 : GCAGCCCATTCTTAT-----TTAA-----T-GGCAGATTACGTTCATA-CATGCCGAG-TTAGTATG-AGGTAC-GAATTAT-TTCCGA-CG-TTGGCCGA
gi|117344 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTGTTGTAT-ATTA-CA-GCCGAG----GTAT----GCAT-GGA-TA--TTCCGA-GG-TTAGC
gi|117345 : GCAGCC-AT-CTT-T-----TCAG-----T-GGCTCTTTACGT-CATA-CA-GCCGAGGTT
gi|117346 : AGCC-AT-CCT-C-----TCAG-----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117347 : AGCC-AT-CCT-C-----TCAGG----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117348 : GCC-AT-CTT-C-----TCAAAATTTT-GTC-CTTTACAT-CATA-CA-GCCGAGATTAGTACG-AAGTA-----------------GG-TTGGCCGAGTG
gi|117350 : -----TCAA-----T-G-CGATTTACGT-CATA-CA-GCCGAGGTTAATATG-AGGTAC-GAT-TA--TTCCGA-
gi|117351 : TACAT-CATA-C--------GTTAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117349 : TACAT-CATA-C--------GTTAGTGTG-AGGTAC-AAA-TA--TTCCGA-GG-TTGGCCGAATG
gi|117352 : ttttcgattccggaaccTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117353 : TTAGTATG-AGGTAT-GAA-TA--TTCTGA-GG-TTGG
gi|117354 : AGTATGCAGGTAC-GAA-TA--TTCCGA--G-TTGGCCGAGTGc
gi|117355 : ACG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117356 : GGTAC-GAA-TA--TTCCGA-GG-CTGGCCGAGTG
Alignments
lowQualScore : 2 2 8888888 88888 2 1 2 2 2 1 1 1 44 1 1
lowQualScore : . . ....... ..... . . . . . . . . .. . .
lowQualScore : 7 7 7777777 88888 5 0 2 2 2 9 8 8 33 8 9
consensus : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
Reference ( family-762 ) : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117334 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGTCGAGTG
gi|117335 : GCAGCC-AT-CTTACATGTATCAA-----T-GGCGGTTTACGT-CATA-CA-GCCGAAGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117336 : GCAGCC-AT-CTT-C-----TCAA-----T-GACACTTTACGT-CATA-CA-GCCGAGGTCAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCAAGT
gi|117337 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGGTTTACGT-CACA-TA-GCCAAGGTTAGTATG-AGGTAC-GAA-TG--TTCCGA-GA-TTGGCCGA
gi|117338 : GCAGCC-AT-CTT-G-----TCAA-----T-GACGGTTTACGG-CATA-CA-GCCGAGATTATTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117339 : GCAACC-AT-CTT-C-----TCAA-----T-GGCGATTTACGT-CAAA-TA-GCCGAGGTAAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117340 : GCAACC-AT-CTT-C-----TCAA-----TTGGCGATTTACGT-CAAAATA-GC-GAGGTAAATATG-AGGTAC-GAA-TAACTTCCGA-GGTTTGGCCGACTG
gi|117341 : GCAGCC-AT-CTT-C-----ACAA-----T-GACGCTTTACCT-CAAA-CA-GCCGAGGTCAGTATA-AGGTAC-GAA-TA--CCCCGA-TG-TTGGCCGAGTG
gi|117342 : GCAGCC-AT-CTT-------TCA------T-GGCGATTTACGT--ATA-CA-GCCAACGTTAATATG-AGCTACGGAA-TA--TTCCGAGGG-TTGGCCGAGTG
gi|117343 : GCAGCCCATTCTTAT-----TTAA-----T-GGCAGATTACGTTCATA-CATGCCGAG-TTAGTATG-AGGTAC-GAATTAT-TTCCGA-CG-TTGGCCGA
gi|117344 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTGTTGTAT-ATTA-CA-GCCGAG----GTAT----GCAT-GGA-TA--TTCCGA-GG-TTAGCC
gi|117345 : GCAGCC-AT-CTT-T-----TCAG-----T-GGCTCTTTACGT-CATA-CA-GCCGAGGTT
gi|117346 : AGCC-AT-CCT-C-----TCAG-----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117347 : AGCC-AT-CCT-C-----TCAGG----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117348 : GCC-AT-CTT-C-----TCAAAATTTT-GTC-CTTTACAT-CATA-CA-GCCGAGATTAGTACG-AAGTA-----------------GG-TTGGCCGAGTG
gi|117349 : TACAT-CATA-C--------GTTAGTGTG-AGGTAC-AAA-TA--TTCCGA-GG-TTGGCCGAATG
gi|117350 : ttttcgattccggaacc-----TCAA-----T-G-CGATTTACGT-CATA-CA-GCCGAGGTTAATATG-AGGTAC-GAT-TA--TTCCGA-
gi|117351 : TACAT-CATA-C--------GTTAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117352 : TTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117353 : TTAGTATG-AGGTAT-GAA-TA--TTCTGA-GG-TTGGC
gi|117354 : AGTATGCAGGTAC-GAA-TA--TTCCGA--G-TTGGCCGAGTG
gi|117355 : ACG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117356 : GGTAC-GAA-TA--TTCCGA-GG-CTGGCCGAGTG
Alignments
lowQualScore : 2 2 8888888 88888 2 1 2 2 2 1 1 1 44 1 1
lowQualScore : . . ....... ..... . . . . . . . . .. . .
lowQualScore : 7 7 7777777 88888 5 0 2 2 2 9 8 8 33 8 9
consensus : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
Reference ( family-762 ) : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117334 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGTCGAGTG
gi|117335 : GCAGCC-AT-CTTACATGTATCAA-----T-GGCGGTTTACGT-CATA-CA-GCCGAAGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117336 : GCAGCC-AT-CTT-C-----TCAA-----T-GACACTTTACGT-CATA-CA-GCCGAGGTCAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCAAGT
gi|117337 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGGTTTACGT-CACA-TA-GCCAAGGTTAGTATG-AGGTAC-GAA-TG--TTCCGA-GA-TTGGCCGA
gi|117338 : GCAGCC-AT-CTT-G-----TCAA-----T-GACGGTTTACGG-CATA-CA-GCCGAGATTATTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117339 : GCAACC-AT-CTT-C-----TCAA-----T-GGCGATTTACGT-CAAA-TA-GCCGAGGTAAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117340 : GCAACC-AT-CTT-C-----TCAA-----TTGGCGATTTACGT-CAAAATA-GC-GAGGTAAATATG-AGGTAC-GAA-TAACTTCCGA-GGTTTGGCCGACTG
gi|117341 : GCAGCC-AT-CTT-C-----ACAA-----T-GACGCTTTACCT-CAAA-CA-GCCGAGGTCAGTATA-AGGTAC-GAA-TA--CCCCGA-TG-TTGGCCGAGTG
gi|117342 : GCAGCC-AT-CTT-------TCA------T-GGCGATTTACGT--ATA-CA-GCCAACGTTAATATG-AGCTACGGAA-TA--TTCCGAGGG-TTGGCCGAGTG
gi|117343 : GCAGCCCATTCTTAT-----TTAA-----T-GGCAGATTACGTTCATA-CATGCCGAG-TTAGTATG-AGGTAC-GAATTAT-TTCCGA-CG-TTGGCCGA
gi|117344 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTGTTGTAT-ATTA-CA-GCCGAG----GTAT----GCAT-GGA-TA--TTCCGA-GG-TTAGCC
gi|117345 : GCAGCC-AT-CTT-T-----TCAG-----T-GGCTCTTTACGT-CATA-CA-GCCGAGGTT
gi|117346 : AGCC-AT-CCT-C-----TCAG-----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117347 : AGCC-AT-CCT-C-----TCAGG----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117348 : GCC-AT-CTT-C-----TCAAAATTTT-GTC-CTTTACAT-CATA-CA-GCCGAGATTAGTACG-AAGTA-----------------GG-TTGGCCGAGTG
gi|117349 : TACAT-CATA-C--------GTTAGTGTG-AGGTAC-AAA-TA--TTCCGA-GG-TTGGCCGAATG
gi|117350 : ttttcgattccggaacc-----TCAA-----T-G-CGATTTACGT-CATA-CA-GCCGAGGTTAATATG-AGGTAC-GAT-TA--TTCCGA-
gi|117351 : TACAT-CATA-C--------GTTAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117352 : TTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117353 : TTAGTATG-AGGTAT-GAA-TA--TTCTGA-GG-TTGGC
gi|117354 : AGTATGCAGGTAC-GAA-TA--TTCCGA--G-TTGGCCGAGTG
gi|117355 : ACG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117356 : GGTAC-GAA-TA--TTCCGA-GG-CTGGCCGAGTG
blockSeqs : C T ACATGTA AATTT T G T A T C G T AC G T
blockSeqs : . . AT G . C . . . . . . T . .
blockSeqs : . . C . . G . . . . . . . . .
blockSeqs : . . C . . G . . . . . . . . .
blockSeqs : . . G . . A . . . . . . . . .
blockSeqs : . . C . . A . . . . . . . . .
blockSeqs : . . C . . C . . . . . . . . .
blockSeqs : . . C . . A . . . . . . . . .
blockSeqs : . . C . . G . . . . . . . . .
blockSeqs : . . T . . T . . . . . . . . .
blockSeqs : . . C . . C . . . . . . . . .
blockSeqs : . . C . . C . . . . . . . . .
blockSeqs : . . C . . C . . . . . . . . .
blockSeqs : . . . . . C . . . . . . . . .
blockSeqs : . . A . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
finalCons : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
Alignments
lowQualScore : 2 2 8888888 88888 2 1 2 2 2 1 1 1 44 1 1
lowQualScore : . . ....... ..... . . . . . . . . .. . .
lowQualScore : 7 7 7777777 88888 5 0 2 2 2 9 8 8 33 8 9
consensus : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
Reference ( family-762 ) : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGNTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117334 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTTTTACGT-CATA-CA-GCCGAGGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGTCGAGTG
gi|117335 : GCAGCC-AT-CTTACATGTATCAA-----T-GGCGGTTTACGT-CATA-CA-GCCGAAGTTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117336 : GCAGCC-AT-CTT-C-----TCAA-----T-GACACTTTACGT-CATA-CA-GCCGAGGTCAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCAAGT
gi|117337 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGGTTTACGT-CACA-TA-GCCAAGGTTAGTATG-AGGTAC-GAA-TG--TTCCGA-GA-TTGGCCGA
gi|117338 : GCAGCC-AT-CTT-G-----TCAA-----T-GACGGTTTACGG-CATA-CA-GCCGAGATTATTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117339 : GCAACC-AT-CTT-C-----TCAA-----T-GGCGATTTACGT-CAAA-TA-GCCGAGGTAAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117340 : GCAACC-AT-CTT-C-----TCAA-----TTGGCGATTTACGT-CAAAATA-GC-GAGGTAAATATG-AGGTAC-GAA-TAACTTCCGA-GGTTTGGCCGACTG
gi|117341 : GCAGCC-AT-CTT-C-----ACAA-----T-GACGCTTTACCT-CAAA-CA-GCCGAGGTCAGTATA-AGGTAC-GAA-TA--CCCCGA-TG-TTGGCCGAGTG
gi|117342 : GCAGCC-AT-CTT-------TCA------T-GGCGATTTACGT--ATA-CA-GCCAACGTTAATATG-AGCTACGGAA-TA--TTCCGAGGG-TTGGCCGAGTG
gi|117343 : GCAGCCCATTCTTAT-----TTAA-----T-GGCAGATTACGTTCATA-CATGCCGAG-TTAGTATG-AGGTAC-GAATTAT-TTCCGA-CG-TTGGCCGA
gi|117344 : GCAGCC-AT-CTT-C-----TCAA-----T-GGCGTGTTGTAT-ATTA-CA-GCCGAG----GTAT----GCAT-GGA-TA--TTCCGA-GG-TTAGCC
gi|117345 : GCAGCC-AT-CTT-T-----TCAG-----T-GGCTCTTTACGT-CATA-CA-GCCGAGGTT
gi|117346 : AGCC-AT-CCT-C-----TCAG-----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117347 : AGCC-AT-CCT-C-----TCAGG----T-GGCGCTTTATG----------------GTTAGTATG-AAGTAC-GAA-TA--TTCCGA-GG-TTTGCCGAG
gi|117348 : GCC-AT-CTT-C-----TCAAAATTTT-GTC-CTTTACAT-CATA-CA-GCCGAGATTAGTACG-AAGTA-----------------GG-TTGGCCGAGTG
gi|117349 : TACAT-CATA-C--------GTTAGTGTG-AGGTAC-AAA-TA--TTCCGA-GG-TTGGCCGAATG
gi|117350 : ttttcgattccggaacc-----TCAA-----T-G-CGATTTACGT-CATA-CA-GCCGAGGTTAATATG-AGGTAC-GAT-TA--TTCCGA-
gi|117351 : TACAT-CATA-C--------GTTAATATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117352 : TTAGTATG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117353 : TTAGTATG-AGGTAT-GAA-TA--TTCTGA-GG-TTGGC
gi|117354 : AGTATGCAGGTAC-GAA-TA--TTCCGA--G-TTGGCCGAGTG
gi|117355 : ACG-AGGTAC-GAA-TA--TTCCGA-GG-TTGGCCGAGTG
gi|117356 : GGTAC-GAA-TA--TTCCGA-GG-CTGGCCGAGTG