lowQualScore : 2 555555 1 3333 3333 1 0 66 33 3 6666 1 333 1
lowQualScore : . ...... . .... .... . . .. .. . .... . ... .
lowQualScore : 0 888888 8 9999 4444 8 5 11 55 6 5555 8 333 9
consensus : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-ATAG-G-C-AAATG---GAG-CAAATAT
Reference ( gi|58086 ) : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-ATAG-A-C-AAATG---GAG-CAAATAT
gi|58087 : AATTGATT-TCT------AAACTG-T----AAA-C--GCAT-CAGC--ATGA-AG-ATAG-A-C-AAATG---GAG-CAAATAT
gi|58088 : AATTGATT-TCT------AAAATA-T----AAA-C--GCAT-CAGC--ACGA-AG-ATAG-A-C-AAATG---GAG-CAATTATa
gi|58089 : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--TAAA-AG-ATAG-A-C-AAATG---GAG-CAAATATa
gi|58090 : AATTGATT-TCT------AAGATG-TTTACAAA-C--GCAT-CAGC--ATGA-AG-ATAG-G-C-AAATG---GAG-CAAATATa
gi|58093 : AATTGATT-TCT------AAAATG-T----AAA-CCGGCAT-CAGCA-ATGA-AG-ATAG-A-C--AATG---GAG-AAAATATa
gi|58095 : AATTG----TCT------AAA-TG-T----AAA-C--GCAT-CAGC--ATGA-AG-ATAG-G-A-AAATG---GAG-CAAATATa
gi|58092 : AATTGATT-TTTTTTTTTAAATTG-T----AAA-C--GCAT-CAGC--ATGA-AGCATAT-G-C-AAATG---GAG-CAAATATa
gi|58094 : AATTGATT-TCT------AAAATC-T----AAA-C--GCAT-CAGCATATGC-TG-ATAG-G-C-GAATA---CAG-CAAATATa
gi|58091 : AATTGATT-TCT------AAAATG-T----TAA-A--GCAC-CAAT--ATGA-TG-ATAT-G-C-AAATA---GAG-CAAATATa
gi|58101 : AATTGATT-TCT------AAAATG-T----AAA-C--CCAT-CAGC--ATAA-AG-ATAA-AGT-AAAT
gi|58096 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CATC--ATGA-TA-ATAT-G-C-AAATA---GAG-CGAATATata
gi|58098 : AATTGATT-TCT------ATAATG-T----TGA-A--GCAC-CATC--ATGA-TG-ATAT-G-T-AAATG---AAG-CAAATAa
gi|58099 : AATTGATT-TCC------AGAATG-T----TAA-A--GCAC-CATC--ATGA-TG-ATAT-G-C-CAATA---GAG-TAAATAT
gi|58100 : AATTGATT-TCT------AAAATGTT----AAA-A--GCAC-CATCT-ATGA-TG-ACTT-G-C-AAATG---GAG-CCAATGT
gi|58097 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CA-C--ATGA-TA-ATAT-G-CAAAATA---GAG-CGAATATa
gi|58102 : AATTGATT-CTA------AAAACG-T----TAA-A--GCAC-CATC--ATGA-TG-ATAT-G-C-AAATA---GGG-CAAATa
gi|58103 : ATTGATT-TCT------AAAATG-T----AAA-C--GTAT-CAAC--ATGA-AG-ATAG-A-C-AAATG---GAG-CAAATAT
gi|58104 : ATTGATT-TCT------AAAATC-T----TGA-A--GCAC-CATC--ATGA-TG-ATAT-G-C-AAATGATTGAGCCAAATATa
gi|58106 : TTGATTCTAT------ACAATG-T----AAA-C--GCATTCAGC--ATTA-AG-ATAG-A-C-AAATG---AGA-CAAATAT
gi|58105 : TTGTTT-TTT------CAATTG-T----AAAGC--GCAT-CAGC--ATGATAGCATAATG-C-AAATG---GAG-CAAATAT
gi|58107 : AATG-T----AAA-C--GCAT-CAGC--ATGA-AG-ATAG-G-C-AAATG---GAG-CAAATATa
gi|58108 : G-T----AAA-C--GCAT-CAGC--ATGA-AG-ATAG-G-C-AAATG---GAG-CAAATATa
Alignments
lowQualScore : 1 555555 1 3333 2222 1 0 55 22 3 1 22 1 333 1
lowQualScore : . ...... . .... .... . . .. .. . . .. . ... .
lowQualScore : 9 555555 7 7777 8888 7 1 99 99 5 7 99 7 222 8
consensus : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
Reference ( family-758 ) : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
gi|58086 : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58087 : AATTGATT-TCT------AAACTG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58088 : AATTGATT-TCT------AAAATA-T----AAA-C--GCAT-CAGC--ACGA-AG-AT-AG-AC-AAATG---GAG-CAATTATa
gi|58089 : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--TAAA-AG-AT-AG-AC-AAATG---GAG-CAAATATa
gi|58090 : AATTGATT-TCT------AAGATG-TTTACAAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATATa
gi|58091 : AATTGATT-TCT------AAAATG-T----TAA-A--GCAC-CAAT--ATGA-TG-AT-AT-GC-AAATA---GAG-CAAATATa
gi|58092 : AATTGATT-TTTTTTTTTAAATTG-T----AAA-C--GCAT-CAGC--ATGA-AGCAT-AT-GC-AAATG---GAG-CAAATAT
gi|58093 : AATTGATT-TCT------AAAATG-T----AAA-CCGGCAT-CAGCA-ATGA-AG-AT-AG-AC--AATG---GAG-AAAATATa
gi|58094 : AATTGATT-TCT------AAAATC-T----AAA-C--GCAT-CAGCATATGC-TG-AT-AG-GC-GAATA---CAG-CAAATATa
gi|58095 : AATTG----TCT------AAA-TG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GA-AAATG---GAG-CAAATATa
gi|58096 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CATC--ATGA-TA-AT-AT-GC-AAATA---GAG-CGAATATa
gi|58097 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CA-C--ATGA-TA-AT-AT-GCAAAATA---GAG-CGAATATa
gi|58098 : AATTGATT-TCT------ATAATG-T----TGA-A--GCAC-CATC--ATGA-TG-AT-AT-GT-AAATG---AAG-CAAATAa
gi|58099 : AATTGATT-TCC------AGAATG-T----TAA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-CAATA---GAG-TAAATAT
gi|58100 : AATTGATT-TCT------AAAATGTT----AAA-A--GCAC-CATCT-ATGA-TG-AC-TT-GC-AAATG---GAG-CCAATGT
gi|58101 : AATTGATT-TCT------AAAATG-T----AAA-C--CCAT-CAGC--ATAA-AG-ATAAA-GT-AAATa
gi|58102 : AATTGATT-CTA------AAAACG-T----TAA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-AAATA---GGG-CAAATata
gi|58103 : ATTGATT-TCT------AAAATG-T----AAA-C--GTAT-CAAC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58104 : ATTGATT-TCT------AAAATC-T----TGA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-AAATGATTGAGCCAAATATa
gi|58105 : TTGTTT-TTT------CAATTG-T----AAAGC--GCAT-CAGC--ATGATAGCAT-AATGC-AAATG---GAG-CAAATAT
gi|58106 : TTGATTCTAT------ACAATG-T----AAA-C--GCATTCAGC--ATTA-AG-AT-AG-AC-AAATG---AGA-CAAATATa
gi|58107 : AATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
gi|58108 : G-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATATa
Alignments
lowQualScore : 1 555555 1 3333 2222 1 0 55 22 3 1 22 1 333 1
lowQualScore : . ...... . .... .... . . .. .. . . .. . ... .
lowQualScore : 9 555555 7 7777 8888 7 1 99 99 5 7 99 7 222 8
consensus : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
Reference ( family-758 ) : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
gi|58086 : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58087 : AATTGATT-TCT------AAACTG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58088 : AATTGATT-TCT------AAAATA-T----AAA-C--GCAT-CAGC--ACGA-AG-AT-AG-AC-AAATG---GAG-CAATTATa
gi|58089 : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--TAAA-AG-AT-AG-AC-AAATG---GAG-CAAATATa
gi|58090 : AATTGATT-TCT------AAGATG-TTTACAAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATATa
gi|58091 : AATTGATT-TCT------AAAATG-T----TAA-A--GCAC-CAAT--ATGA-TG-AT-AT-GC-AAATA---GAG-CAAATATa
gi|58092 : AATTGATT-TTTTTTTTTAAATTG-T----AAA-C--GCAT-CAGC--ATGA-AGCAT-AT-GC-AAATG---GAG-CAAATAT
gi|58093 : AATTGATT-TCT------AAAATG-T----AAA-CCGGCAT-CAGCA-ATGA-AG-AT-AG-AC--AATG---GAG-AAAATATa
gi|58094 : AATTGATT-TCT------AAAATC-T----AAA-C--GCAT-CAGCATATGC-TG-AT-AG-GC-GAATA---CAG-CAAATATa
gi|58095 : AATTG----TCT------AAA-TG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GA-AAATG---GAG-CAAATATa
gi|58096 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CATC--ATGA-TA-AT-AT-GC-AAATA---GAG-CGAATATa
gi|58097 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CA-C--ATGA-TA-AT-AT-GCAAAATA---GAG-CGAATATa
gi|58098 : AATTGATT-TCT------ATAATG-T----TGA-A--GCAC-CATC--ATGA-TG-AT-AT-GT-AAATG---AAG-CAAATAa
gi|58099 : AATTGATT-TCC------AGAATG-T----TAA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-CAATA---GAG-TAAATAT
gi|58100 : AATTGATT-TCT------AAAATGTT----AAA-A--GCAC-CATCT-ATGA-TG-AC-TT-GC-AAATG---GAG-CCAATGT
gi|58101 : AATTGATT-TCT------AAAATG-T----AAA-C--CCAT-CAGC--ATAA-AG-ATAAA-GT-AAATa
gi|58102 : AATTGATT-CTA------AAAACG-T----TAA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-AAATA---GGG-CAAATata
gi|58103 : ATTGATT-TCT------AAAATG-T----AAA-C--GTAT-CAAC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58104 : ATTGATT-TCT------AAAATC-T----TGA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-AAATGATTGAGCCAAATATa
gi|58105 : TTGTTT-TTT------CAATTG-T----AAAGC--GCAT-CAGC--ATGATAGCAT-AATGC-AAATG---GAG-CAAATAT
gi|58106 : TTGATTCTAT------ACAATG-T----AAA-C--GCATTCAGC--ATTA-AG-AT-AG-AC-AAATG---AGA-CAAATATa
gi|58107 : AATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
gi|58108 : G-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATATa
blockSeqs : C TTTTTT T TTAC CCG T AT TA C A AT A ATT C
blockSeqs : . . . . GC . A A C . G . . .
blockSeqs : . . . . C . T A . . G . . .
blockSeqs : . . . . C . . A . . G . . .
blockSeqs : . . . . C . . A . . G . . .
blockSeqs : . . . . C . . T . . T . . .
blockSeqs : . . . . A . . A . . T . . .
blockSeqs : . . . . C . . A . . G . . .
blockSeqs : . . . . C . . T . . G . . .
blockSeqs : . . . . C . . A . . G . . .
blockSeqs : . . . . A . . T . . T . . .
blockSeqs : . . . . A . . T . . T . . .
blockSeqs : . . . . A . . T . . T . . .
blockSeqs : . . . . A . . T . . T . . .
blockSeqs : . . . . A . . T . . T . . .
blockSeqs : . . . . C . . A . . A . . .
blockSeqs : . . . . A . . T . . T . . .
blockSeqs : . . . . C . . A . . G . . .
blockSeqs : . . . . A . . T . . T . . .
blockSeqs : . . . . C . . A . . G . . .
blockSeqs : . . C . . A . . G . . .
blockSeqs : . . C . . A . . G .
blockSeqCons :
originalCons : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
finalCons : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
Alignments
lowQualScore : 1 555555 1 3333 2222 1 0 55 22 3 1 22 1 333 1
lowQualScore : . ...... . .... .... . . .. .. . . .. . ... .
lowQualScore : 9 555555 7 7777 8888 7 1 99 99 5 7 99 7 222 8
consensus : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
Reference ( family-758 ) : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
gi|58086 : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58087 : AATTGATT-TCT------AAACTG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58088 : AATTGATT-TCT------AAAATA-T----AAA-C--GCAT-CAGC--ACGA-AG-AT-AG-AC-AAATG---GAG-CAATTATa
gi|58089 : AATTGATT-TCT------AAAATG-T----AAA-C--GCAT-CAGC--TAAA-AG-AT-AG-AC-AAATG---GAG-CAAATATa
gi|58090 : AATTGATT-TCT------AAGATG-TTTACAAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATATa
gi|58091 : AATTGATT-TCT------AAAATG-T----TAA-A--GCAC-CAAT--ATGA-TG-AT-AT-GC-AAATA---GAG-CAAATATa
gi|58092 : AATTGATT-TTTTTTTTTAAATTG-T----AAA-C--GCAT-CAGC--ATGA-AGCAT-AT-GC-AAATG---GAG-CAAATAT
gi|58093 : AATTGATT-TCT------AAAATG-T----AAA-CCGGCAT-CAGCA-ATGA-AG-AT-AG-AC--AATG---GAG-AAAATATa
gi|58094 : AATTGATT-TCT------AAAATC-T----AAA-C--GCAT-CAGCATATGC-TG-AT-AG-GC-GAATA---CAG-CAAATATa
gi|58095 : AATTG----TCT------AAA-TG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GA-AAATG---GAG-CAAATATa
gi|58096 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CATC--ATGA-TA-AT-AT-GC-AAATA---GAG-CGAATATa
gi|58097 : AATTGATT-TCT------AAAATG-T----TTA-A--GCAC-CA-C--ATGA-TA-AT-AT-GCAAAATA---GAG-CGAATATa
gi|58098 : AATTGATT-TCT------ATAATG-T----TGA-A--GCAC-CATC--ATGA-TG-AT-AT-GT-AAATG---AAG-CAAATAa
gi|58099 : AATTGATT-TCC------AGAATG-T----TAA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-CAATA---GAG-TAAATAT
gi|58100 : AATTGATT-TCT------AAAATGTT----AAA-A--GCAC-CATCT-ATGA-TG-AC-TT-GC-AAATG---GAG-CCAATGT
gi|58101 : AATTGATT-TCT------AAAATG-T----AAA-C--CCAT-CAGC--ATAA-AG-ATAAA-GT-AAATa
gi|58102 : AATTGATT-CTA------AAAACG-T----TAA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-AAATA---GGG-CAAATata
gi|58103 : ATTGATT-TCT------AAAATG-T----AAA-C--GTAT-CAAC--ATGA-AG-AT-AG-AC-AAATG---GAG-CAAATAT
gi|58104 : ATTGATT-TCT------AAAATC-T----TGA-A--GCAC-CATC--ATGA-TG-AT-AT-GC-AAATGATTGAGCCAAATATa
gi|58105 : TTGTTT-TTT------CAATTG-T----AAAGC--GCAT-CAGC--ATGATAGCAT-AATGC-AAATG---GAG-CAAATAT
gi|58106 : TTGATTCTAT------ACAATG-T----AAA-C--GCATTCAGC--ATTA-AG-AT-AG-AC-AAATG---AGA-CAAATATa
gi|58107 : AATG-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATAT
gi|58108 : G-T----AAA-C--GCAT-CAGC--ATGA-AG-AT-AG-GC-AAATG---GAG-CAAATATa