lowQualScore : 11111111 1111111 111
lowQualScore : 4444 33 9999 1 1 99 1 5555555 1 22 1 1 66 4 1 00000000 1 1 1 1 5 1 111 22 4444444 1 22 111 333 1 99999999 3 22 7777 1 1 1 333 1 1 1 1 66666666 1 88 2 3 1
lowQualScore : .... .. .... . . .. . ....... . .. . . .. . . ........ . . . . . . ... .. ....... . .. ... ... . ........ . .. .... . . . ... . . . . ........ . .. . . .
lowQualScore : 7777 11 6666 9 9 88 8 9999999 8 55 8 8 11 6 8 44444444 8 8 8 8 5 8 999 55 9999999 7 44 333 000 7 33333333 5 00 8888 7 7 7 000 7 7 7 7 33333333 9 99 0 0 3
consensus : TTTCATTT----AA--TT--N-GAT-G-TATTTTA-A-T-------T-TAGTA--AAA-T-GAA--TNAAGTAA-A----TC--TC-C-A-T-CA-C-T-C-AT--AG-TT-G--A-A--TAG--A---C-TA--------T-GA-CTCCAA----T-TTT-C-TTTCCATTTG---TT-G-T-CA-T--------C-TAA-TCC-ACACATANAACCAGA
Reference ( gi|78247 ) : TTTCATTT----AA--TT--G-GAT-G-TATTTTG-A-T-------T-TAGTA--AAA-T-GAA--TAAAGTAA-A----TC--TC-C-A-T-CA-C-T-T-AT--AG-CT-A--A-A--TAG--A---C-TA--------T-GA-CTCCAA----T-TTT-C-TTTCCATTTG---TT-G-T-CA-T--------C-TAA-CCC-ACACATAAAACCAGA
gi|78250 : TTCCATTT----AA--CT--G-GAT-G-TGTTTTA-A-T-------T-TAGTA--AAA-T-GAA--TAAAGTAA-A----TC--TC-C-A-T-CA-C-T-T-AT--AG-TT-G--A-A--TAG--A---C-TA--------T-GA-ATCCAA----T-TTT-C-TTTCCATTTC---TT-G-T-CA-T--------C-TAA-TCC-ACACATAAAACCAGA
gi|78248 : TTTCATTT----AA--TT--T-GAT-G-TATTTTA-A-T-------T-TAGTA--AAA-T-GAA--TTAAGT-A-A----TA--TT-C-A-T-CA-C-T-C-AT--AG-TT-G--A-A--TAT--A---C-TA--------T-GA-TTCCAA----T-TTT---TTTCCATTTG---TT-G-T-CA-T--------C-TAA-TCC-ACACATACAACCAGA
gi|78249 : TTTCATTT----AA--TT--T-GAT-T-TAATTTA-A-T-------T-TAGTA--AAA-T-GAA--TTCAGTAA-A----TC--TC-C-A-T-CA-C-T-C-AT--AGATT-G--A-A--TGA--A---C-TA--------TGGA-CTCCAA----T-TTT-C-TTTCCATT-----TT-G-T-CA-T--------C-TAA-TCC-ACACATACAACCAGA
gi|78257 : TTTTATTT----AC--CT--G-GAT-G-TATTTTG-A-T-------T-TAGTA--AAA-T-AAA--TACAGTAACA----TC---C-C-A-T-CA-C-T-T-AT--AG-TT-G--A-A--TAG--A---C-TA--------T-GG-CTCCAATCTTT-TTT-T-TTCCCATTTC---TT-G-T-TA-T--------C-TAA-TCC-ACACATTAATCCAGA
gi|78253 : TTTCATTT----AA--TT--T-GATTG-TATTTTA-A-T-------T-TAGTA--AAG---AAA--TTAAGTAA-A----TA--TC-C-A-T-CA-C-T-C--T--AG-TT-G--A-A--TAT--A---C-TA--------T-GA-TTCCAA----T-TTT-C-TTTCCATTTG---TT-G-T-CA-T--------C-TAA-TCC-A-ACATA
gi|78252 : TTTCATTT----AA--TT--T-GAT-G-TATTT-A-A-T-------T-TAGTA--AAA-T-GAA--TTAAGTAA-A----TAAATC-C-A-T-CA-C-T-TCAT--AG-TT-G--A-A--TA---A---C-TA--------T-GA-TTCCA-----T-TTT-C-TTTCCATTTG---TT-G-T-CA-T--------C-TAATCCC-A-ACATACAAtaca
gi|78251 : TTTCATTT----AAAATT--G--AT-G-TATTTTA-A-T-------T-TAGCA--AAAAT-GAA--TTAAGTAA-A----TA--TC-C-A-T-CA-G-T-C-ATTTAG-TTTG--A-A--TAT--A---C-TA--------T-GA-TTCCAA----T-TTT-C-TTT-CATTTG---TT-G-T-C--T--------C-TAA-TCC-ACACATACAACCAGA
gi|78254 : TTTCATTT----AA--TT--T-GAT-G-TACTTTACA-T-------T-TACTA--AAA-T--AA--TAA-GTAA-A----TA--TC-C-A-T-CA-C-T-C-AT--AG-TT-G--A-T--TA-------C-TA--------T-GA-T--CAA----T-TTT-C-TTTCCATTTG---TT---T-CA-T--------C-TAA--CC-ACACATACAACCAGA
gi|78255 : TTTCATTT----AA--TT--A--AT-G-TATTTTA-A-T-------T-TAGTA--AAA-TTGAA--TTAAGTAA-A----TA--TC-C-A-T-CAAC-TAC-AT--AG-TT-A--G-AAGTAT--A---C-TA--------T-GA-TTCCAA----T-TTT-CCTTTCCATTTG---TT-G-T-CA-T--------A-CAA-CC
gi|78256 : TTTCATTT----AA--TT--TTGAT-G-TAATTTA-AAT-------T-TAGTA--AAA-T--AA--TTAAGTAA-------T--TC-C-A-T-CA-C-----AT--AG-TT-G--A-A--TAGG-A---C-TA--------T-GA-CTCCAA----T-TTTTC-TTTCCATTTG---CT-G-T-CA-T----------TAA--TC-ACACAagaggtaca
gi|78259 : TTTCATTTTTAAAA--TT--G-GAT-G-TATTTTG-A-T-------T-TAGTA--TTA-T-GAA--TAAAGTAA-A----TC--CC-C-A-T-CA-C-A-T-AT--AG-TT-G--A-A--TAG-----------------------------------TTT-C-TTTCCAT------TT-G-A-CA-T--------C-TAA-TCC-AAATATAatacaccaaga
gi|78258 : TTTCATTT----AA--TT--T--AT-G-TATTTTA-A-T-------T-TAGTA--AAA-T-AGA--TTAAGTAA-A--------TC-C-A-T-CA-C-A-T-GT--AG-------A-A--TAT--A-----TA--------T--A-TTCCAA----T-TTT-C-TTT-CATTT----TT-G-T-CATT--------C-TAA-TCC-ACA-ATAAA--CAGA
gi|78264 : TTTGATTT--------TT--G-TAT-----TTTTA-A-T-------T-TAGTA--AAA-T-GAAA-TTAAGTAA-AAA--TC--TC-C-A-T-CA-C-T-C-AT--AG-TT-G--ATA--TAATTA---C-TA--------TTGA-TTCCAA----T-TTT-C-TTTC-ATTTG---TT-G-T-CA-G--------T-CAA-TCC-ACATA
gi|78260 : TTTCTTTT----AA--TT--TTGAT-G-TCTTCT-----------------TA--AAT-T------TCTAGAAA-A----TCG-TC-C-AAT-CAAC-T-C-AT--AG-AT-G--A-A--TAT--A---CCTA--------T-GA-TTCCAA----T-TT--C-TTTCCATTTG---TT-GGT-CA-T--------C-TAA-TCCAACAC-TAAA--CAGA
gi|78261 : TCCATTT----AA--TT--G-GAT-A-TATTTTG-A-T-------T-TAGT---AAA-T-GAA--TACAGTAA-A----T---TC-C-----TA-C-T-T-AT--AG-TT-----------G--A---G-TT--------T-GA-ATCCAA----T-TTT-C-TAATCATTTT---TC-G-A-CA-T--------
gi|78262 : ATTT----AC--CT--G-GAT-G-TATTTTT-A-T-------T-TAGTA--AAA-G-GAA--TACAATAA-C----GC--TC-T-A-T-CA-C-T-T-AT--AG-TT-G--A-A--TAA--A---C-AC--------T-GG-CTCCAA----TCTTT-T-TTTCCATTTG---TT-G-T-CA-T--------C-TAA-TCC-ACA
gi|78263 : TTC----AA--TT--T-GAT-G-TATT--A-A-T----------AGTATAAAA-T-GAA--TTAAGTAA-A----TA--TC-C-A-T-CA-C-T-C-AT--AG--T-G--A-A--TAT--A---C-TAGTG-----T-GAATTCCAA----T-TTT-C-TTTCCATTTG---TT-G-T-CA-T--------C-TAA-TCC-ACACATACAACCAGA
gi|78266 : T----AA--TTATG-GAT-G-TATTA-A-A-T-------T-TAGTA--AAA-T-GAAAATAAAGTAA-AATTTTC--TC-CCA-T-TA-C-T-T-AT--AG-TT-G--A-A--TAG--G---C-TAAAAGGCTAT-GA-CTC-AA----T-TT--C-TTTCCATTTG---TT-G-T-CA-TCTATAATAC-TAA-TCC-ACACACA
gi|78265 : T--G-GAT-G-TTTTTTTTA-T-------T-TAGTA--AAA-G-GAA--TACAATAA-C----GC--TC-T-A-T-CA-CTT-T-AT--AG-TT-G--A-A--TAAACA---C-T---------T-GG-CTCCAATC--T-TTT-T-TTTCCATTTG---TT-G-T-CA-T--------CATAA-TCC-ACA
gi|78267 : tttagatttcc-GAT-GGTATTTTA-A-T-------T-TAGTA--AAA-T-GAAA-TGCAGTAA-C----GC--TCAC-A-T-CA-C-T-T-AT--AG-TT-G--A-T--CAG--A---C-AA--------T-GG-CT-CAA----T-CTT-T-TTTCCCATTG---AT-A-T-CA-T--------
gi|78268 : AT-G-TATTTCA-A-TATACAGCTGTAGTA--AAA-T-GAA--TAAAGTAA-A----TC--TG-G-A-T-CA-C-T-T-AT--AG-TT-G--A-A--TAG--A---C-TA--------T-GA-CTCCAA----T-TTT-C-TTTCTATTTG---TT-G-T-CA-T--------T-TAA-TGC-ACACATAAAACCAGA
gi|78269 : TTTA-A-A-------T-TAGTA--CAA-T-GAA--TAA-GTAA-A----TC--TC-C-A-TTCATC-T-T-AT--AG-TT-GTGA-T--TAG--AGGAC-TA--------T-GA-CTCCAAG---T-TTT-C-TTTCCATTTGCTTTT-G-T-CA-T--------C-TGT-CCC-ACACA
gi|78270 : --A-A--GAG--A---C-T---------T-GA-CTCCAA----T-TTT-C-TTTCCATTTG---TTCG-TCCA-T--------C-TAA-TGC-ACACATAAAACCAGA
Alignments
lowQualScore : 11111111
lowQualScore : 4444 2 777 1 1 1 3 1 5555555 1 22 3 55 4 1 99999999 1 1 1 1 1 3 444 22 1 3 22 1 1 888 222 44 00000000 1 22 5555 44 3 222 1 1 1 1 66666666 1 1 2 1 1
lowQualScore : .... . ... . . . . . ....... . .. . .. . . ........ . . . . . . ... .. . . .. . . ... ... .. ........ . .. .... .. . ... . . . . ........ . . . . .
lowQualScore : 5555 0 444 8 8 7 5 7 7777777 7 44 5 99 4 7 11111111 7 7 7 7 7 5 000 44 7 5 33 7 7 111 999 00 66666666 7 99 2222 00 3 999 7 7 7 7 00000000 8 9 1 0 6
consensus : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
Reference ( family-751 ) : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
gi|78247 : TTTCATTT----AAT-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--AAA-TGAA--TAAAGTAA-A----TC--TC-C-A-T-C-A-CT-T-AT--AG-CT-A--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAACCC-ACAC-ATAAAACCAGA
gi|78248 : TTTCATTT----AAT-TT--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TTAAGT-A-A----TA--TT-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT--TTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78249 : TTTCATTT----AAT-TT--GAT-T-TAATTT-A-A-T-------T-TAGTA--AAA-TGAA--TTCAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AGATT-G--A-A-TGA--A---C--TA--------TGGA-CTCCAA----T--TTT-CTTTCCATT-----TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78250 : TTCCATTT----AAC-TG--GAT-G-TGTTTT-A-A-T-------T-TAGTA--AAA-TGAA--TAAAGTAA-A----TC--TC-C-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-ATCCAA----T--TTT-CTTTCCATTTC---TT-G-T-CA-T--------C-TAATCC-ACAC-ATAAAACCAGA
gi|78251 : TTTCATTT----AAAATT--GAT-G-TATTTT-A-A-T-------T-TAGCA--AAAATGAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-GT-C-ATTTAG-TTTG--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT-CTTT-CATTTG---TT-G-T-C--T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78252 : TTTCATTT----AAT-TT--GAT-G-TATTT--A-A-T-------T-TAGTA--AAA-TGAA--TTAAGTAA-A----TAAATC-C-A-T-C-A-CTTC-AT--AG-TT-G--A-A-TA---A---C--TA--------T-GA-TTCCA-----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-CAAC-ATACAA
gi|78253 : TTTCATTT----AAT-TT--GATTG-TATTTT-A-A-T-------T-TAGTA--AAG--AAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-CT-C--T--AG-TT-G--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-A-AC-ATATA
gi|78254 : TTTCATTT----AAT-TT--GAT-G-TACTTT-ACA-T-------T-TACTA--AAA-T-AA--T-AAGTAA-A----TA--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-T-T----A---C--TA--------T-GA---TCAA----T--TTT-CTTTCCATTTG---TT---T-CA-T--------C-TAA-CC-ACAC-ATACAACCAGAca
gi|78255 : TTTCATTT----AAT-TA---AT-G-TATTTT-A-A-T-------T-TAGTA--AAATTGAA--TTAAGTAA-A----TA--TC-C-A-T-CAA-CTAC-AT--AG-TTAG--A-AGTAT--A---C--TA--------T-GA-TTCCAA----T--TTTCCTTTCCATTTG---TT-G-T-CA-T--------A-CAACC
gi|78256 : TTTCATTT----AAT-TTT-GAT-G-TAATTT-A-AAT-------T-TAGTA--AAA-T-AA--TTAAGTAA-------T--TC-C-A-T-C-A-C----AT--AG-TT-G--A-A-TAGG-A---C--TA--------T-GA-CTCCAA----T--TTTTCTTTCCATTTG---CT-G-T-CA-T----------TAAT-C-ACACAATACACCAAGAagaggtaca
gi|78257 : TTTTATTT----ACC-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--AAA-TAAA--TACAGTAACA----TC---C-C-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GG-CTCCAATCTTT--TTT-TTTCCCATTTC---TT-G-T-TA-T--------C-TAATCC-ACAC-ATTAATCCAGA
gi|78258 : TTTCATTT----AAT-TT---AT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TAGA--TTAAGTAA-A--------TC-C-A-T-C-A----C-AT---G-TA-G--A-A-TAT--A------TA--------T--A-TTCCAA----T--TTT-CTTT-CATTT----TT-G-T-CATT--------C-TAATCC-ACA--ATAAA--CAGA
gi|78259 : TTTCATTTTTAAAAT-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--TTA-TGAA--TAAAGTAA-A----TC--CC-C-A-T-C-A-CA-T-AT--AG-TT-G--A-A-TAG-------------------------------------TTT-CTTTCCAT------TT-G-A-CA-T--------C-TAATCC-AAAT-ATA
gi|78260 : TTTCTTTT----AAT-TTT-GAT-G-TCTTCT------------------TA--AAT-T-----TCTAGAAA-A----TCG-TC-C-AAT-C-AACT-C-AT--AG-AT-G--A-A-TAT--A---CC-TA--------T-GA-TTCCAA----T--TT--CTTTCCATTTG---TT-GGT-CA-T--------C-TAATCCAACAC--TAAA--CAGA
gi|78261 : TCCATTT----AAT-TG--GAT-A-TATTTT-G-A-T-------T-TAGT---AAA-TGAA--TACAGTAA-A----T---TC-C-----T-A-CT-T-AT--AG-TT-G--A-G-T-----------T---------T-GA-ATCCAA----T--TTT-CTAATCATTTT---TC-G-A-CA-T--------
gi|78262 : ATTT----ACC-TG--GAT-G-TATTTT-T-A-T-------T-TAGTA--AAA-GGAA--TACAATAA-C----GC--TC-T-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAA--A---C--AC--------T-GG-CTCCAA----TC-TTT-TTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACA
gi|78263 : TTC----AAT-TT--GAT-G-TATT---A-A-T----------AGTATAAAA-TGAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-CT-C-AT--AG-T--G--A-A-TAT--A---C--TAGTG-----T-GAATTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78264 : TTT----GAT-TT--T-T-G-TATTTTTA-A-T-------T-TAGTA--AAA-TGAAA-TTAAGTAA-AAA--TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--ATA-TAATTA---C--TAT-------T-GA-TTCCAA----T--TTT-CTTT-CATTTG---TT-G-T-CA-G--------T-CAATCC-ACAT-A
gi|78265 : -TG--GAT-G-TTTTTT-TTA-T-------T-TAGTA--AAA-GGAA--TACAATAA-C----GC--TC-T-A-T-C-A-CT-TTAT--AG-TT-G--A-A-TAA--A---CACT---------T-GG-CTCCAA----TCTTTT-TTTTCCATTTG---TT-G-T-CA-T--------CATAATCC-ACA
gi|78266 : tttagatttccT----AAT-TATGGAT-G-TATTA--A-A-T-------T-TAGTA--AAA-TGAAAATAAAGTAA-AATTTTC--TC-CCA-T-T-A-CT-T-AT--AG-TT-G--A-A-TAG--G---C--TAAAAGGCTAT-GA-CTC-AA----T--TT--CTTTCCATTTG---TT-G-T-CA-TCTATAATAC-TAATCC-ACAC-ACA
gi|78267 : --GAT-GGTATTTT-A-A-T-------T-TAGTA--AAA-TGAAA-TGCAGTAA-C----GC--TCAC-A-T-C-A-CT-T-AT--AG-TT-G--A-T-CAG--A---C--AA--------T-GG-CT-CAA----T--CTT-TTTTCCCATTG---AT-A-T-CA-T--------
gi|78268 : AT-G-TATTTC-A-A-TATACAGCTGTAGTA--AAA-TGAA--TAAAGTAA-A----TC--TG-G-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCTATTTG---TT-G-T-CA-T--------T-TAATGC-ACAC-ATAAAACCAGA
gi|78269 : TTT-A-A-A-------T-TAGTA--CAA-TGAA--T-AAGTAA-A----TC--TC-C-A-TTC-ATCT-T-AT--AG-TT-GTGA-T-TAG--AGGAC--TA--------T-GA-CTCCAAG---T--TTT-CTTTCCATTTGCTTTT-G-T-CA-T--------C-TGTCCC-ACAC-A
gi|78270 : --A-A-GAG--A---C--T---------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TTCG-TCCA-T--------C-TAATGC-ACAC-ATAAAACCAGA
Alignments
lowQualScore : 11111111
lowQualScore : 4444 2 777 1 1 1 3 1 5555555 1 22 3 55 4 1 99999999 1 1 1 1 1 3 444 22 1 3 22 1 1 888 222 44 00000000 1 22 5555 44 3 222 1 1 1 1 66666666 1 1 2 1 1
lowQualScore : .... . ... . . . . . ....... . .. . .. . . ........ . . . . . . ... .. . . .. . . ... ... .. ........ . .. .... .. . ... . . . . ........ . . . . .
lowQualScore : 5555 0 444 8 8 7 5 7 7777777 7 44 5 99 4 7 11111111 7 7 7 7 7 5 000 44 7 5 33 7 7 111 999 00 66666666 7 99 2222 00 3 999 7 7 7 7 00000000 8 9 1 0 6
consensus : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
Reference ( family-751 ) : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
gi|78247 : TTTCATTT----AAT-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--AAA-TGAA--TAAAGTAA-A----TC--TC-C-A-T-C-A-CT-T-AT--AG-CT-A--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAACCC-ACAC-ATAAAACCAGA
gi|78248 : TTTCATTT----AAT-TT--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TTAAGT-A-A----TA--TT-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT--TTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78249 : TTTCATTT----AAT-TT--GAT-T-TAATTT-A-A-T-------T-TAGTA--AAA-TGAA--TTCAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AGATT-G--A-A-TGA--A---C--TA--------TGGA-CTCCAA----T--TTT-CTTTCCATT-----TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78250 : TTCCATTT----AAC-TG--GAT-G-TGTTTT-A-A-T-------T-TAGTA--AAA-TGAA--TAAAGTAA-A----TC--TC-C-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-ATCCAA----T--TTT-CTTTCCATTTC---TT-G-T-CA-T--------C-TAATCC-ACAC-ATAAAACCAGA
gi|78251 : TTTCATTT----AAAATT--GAT-G-TATTTT-A-A-T-------T-TAGCA--AAAATGAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-GT-C-ATTTAG-TTTG--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT-CTTT-CATTTG---TT-G-T-C--T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78252 : TTTCATTT----AAT-TT--GAT-G-TATTT--A-A-T-------T-TAGTA--AAA-TGAA--TTAAGTAA-A----TAAATC-C-A-T-C-A-CTTC-AT--AG-TT-G--A-A-TA---A---C--TA--------T-GA-TTCCA-----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-CAAC-ATACAA
gi|78253 : TTTCATTT----AAT-TT--GATTG-TATTTT-A-A-T-------T-TAGTA--AAG--AAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-CT-C--T--AG-TT-G--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-A-AC-ATATA
gi|78254 : TTTCATTT----AAT-TT--GAT-G-TACTTT-ACA-T-------T-TACTA--AAA-T-AA--T-AAGTAA-A----TA--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-T-T----A---C--TA--------T-GA---TCAA----T--TTT-CTTTCCATTTG---TT---T-CA-T--------C-TAA-CC-ACAC-ATACAACCAGAca
gi|78255 : TTTCATTT----AAT-TA---AT-G-TATTTT-A-A-T-------T-TAGTA--AAATTGAA--TTAAGTAA-A----TA--TC-C-A-T-CAA-CTAC-AT--AG-TTAG--A-AGTAT--A---C--TA--------T-GA-TTCCAA----T--TTTCCTTTCCATTTG---TT-G-T-CA-T--------A-CAACC
gi|78256 : TTTCATTT----AAT-TTT-GAT-G-TAATTT-A-AAT-------T-TAGTA--AAA-T-AA--TTAAGTAA-------T--TC-C-A-T-C-A-C----AT--AG-TT-G--A-A-TAGG-A---C--TA--------T-GA-CTCCAA----T--TTTTCTTTCCATTTG---CT-G-T-CA-T----------TAAT-C-ACACAATACACCAAGAagaggtaca
gi|78257 : TTTTATTT----ACC-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--AAA-TAAA--TACAGTAACA----TC---C-C-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GG-CTCCAATCTTT--TTT-TTTCCCATTTC---TT-G-T-TA-T--------C-TAATCC-ACAC-ATTAATCCAGA
gi|78258 : TTTCATTT----AAT-TT---AT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TAGA--TTAAGTAA-A--------TC-C-A-T-C-A----C-AT---G-TA-G--A-A-TAT--A------TA--------T--A-TTCCAA----T--TTT-CTTT-CATTT----TT-G-T-CATT--------C-TAATCC-ACA--ATAAA--CAGA
gi|78259 : TTTCATTTTTAAAAT-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--TTA-TGAA--TAAAGTAA-A----TC--CC-C-A-T-C-A-CA-T-AT--AG-TT-G--A-A-TAG-------------------------------------TTT-CTTTCCAT------TT-G-A-CA-T--------C-TAATCC-AAAT-ATA
gi|78260 : TTTCTTTT----AAT-TTT-GAT-G-TCTTCT------------------TA--AAT-T-----TCTAGAAA-A----TCG-TC-C-AAT-C-AACT-C-AT--AG-AT-G--A-A-TAT--A---CC-TA--------T-GA-TTCCAA----T--TT--CTTTCCATTTG---TT-GGT-CA-T--------C-TAATCCAACAC--TAAA--CAGA
gi|78261 : TCCATTT----AAT-TG--GAT-A-TATTTT-G-A-T-------T-TAGT---AAA-TGAA--TACAGTAA-A----T---TC-C-----T-A-CT-T-AT--AG-TT-G--A-G-T-----------T---------T-GA-ATCCAA----T--TTT-CTAATCATTTT---TC-G-A-CA-T--------
gi|78262 : ATTT----ACC-TG--GAT-G-TATTTT-T-A-T-------T-TAGTA--AAA-GGAA--TACAATAA-C----GC--TC-T-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAA--A---C--AC--------T-GG-CTCCAA----TC-TTT-TTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACA
gi|78263 : TTC----AAT-TT--GAT-G-TATT---A-A-T----------AGTATAAAA-TGAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-CT-C-AT--AG-T--G--A-A-TAT--A---C--TAGTG-----T-GAATTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78264 : TTT----GAT-TT--T-T-G-TATTTTTA-A-T-------T-TAGTA--AAA-TGAAA-TTAAGTAA-AAA--TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--ATA-TAATTA---C--TAT-------T-GA-TTCCAA----T--TTT-CTTT-CATTTG---TT-G-T-CA-G--------T-CAATCC-ACAT-A
gi|78265 : -TG--GAT-G-TTTTTT-TTA-T-------T-TAGTA--AAA-GGAA--TACAATAA-C----GC--TC-T-A-T-C-A-CT-TTAT--AG-TT-G--A-A-TAA--A---CACT---------T-GG-CTCCAA----TCTTTT-TTTTCCATTTG---TT-G-T-CA-T--------CATAATCC-ACA
gi|78266 : tttagatttccT----AAT-TATGGAT-G-TATTA--A-A-T-------T-TAGTA--AAA-TGAAAATAAAGTAA-AATTTTC--TC-CCA-T-T-A-CT-T-AT--AG-TT-G--A-A-TAG--G---C--TAAAAGGCTAT-GA-CTC-AA----T--TT--CTTTCCATTTG---TT-G-T-CA-TCTATAATAC-TAATCC-ACAC-ACA
gi|78267 : --GAT-GGTATTTT-A-A-T-------T-TAGTA--AAA-TGAAA-TGCAGTAA-C----GC--TCAC-A-T-C-A-CT-T-AT--AG-TT-G--A-T-CAG--A---C--AA--------T-GG-CT-CAA----T--CTT-TTTTCCCATTG---AT-A-T-CA-T--------
gi|78268 : AT-G-TATTTC-A-A-TATACAGCTGTAGTA--AAA-TGAA--TAAAGTAA-A----TC--TG-G-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCTATTTG---TT-G-T-CA-T--------T-TAATGC-ACAC-ATAAAACCAGA
gi|78269 : TTT-A-A-A-------T-TAGTA--CAA-TGAA--T-AAGTAA-A----TC--TC-C-A-TTC-ATCT-T-AT--AG-TT-GTGA-T-TAG--AGGAC--TA--------T-GA-CTCCAAG---T--TTT-CTTTCCATTTGCTTTT-G-T-CA-T--------C-TGTCCC-ACAC-A
gi|78270 : --A-A-GAG--A---C--T---------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TTCG-TCCA-T--------C-TAATGC-ACAC-ATAAAACCAGA
blockSeqs : TTAA A ATG T G T C A ATACAGC G TA A AA T C ATTTTC A C A T A A TC TT A T TG T G ATT GGA AC AAAGGCTA G AT TCTT CT C CTT C G C T CTATAATA A A A C A
blockSeqs : . . TT . . . T . . . . T A T . TAAA . . . . . T AC . . A . . . GG . C GTG . T G C T . . . . . . . . . C A
blockSeqs : . . TT . . . . . . . . . A A . AATC . . . . . . TT . . . . . . T . . T . C . . . . . . . . . . . . A A
blockSeqs : . . T . . . . . . . . . . T . TCG . . . . . . C . . . . . . A . . . . A . . . . . . . . . . . . C A
blockSeqs : . . T . . . . . . . . . . T . TA . . . . . . C . . . . . . G . . . . T . . . . . . . . . . . . C A
blockSeqs : . . G . . . . . . . . . . T . TC . . . . . . T . . . . . . T . . . . T . . . . . . . . . . . . T A
blockSeqs : . . T . . . . . . . . . . T . TC . . . . . . C . . . . . . T . . . . T . . . . . . . . . . . . C C
blockSeqs : . . T . . . . . . . . . . T . TA . . . . . . C . . . . . . T . . . . T . . . . . . . . . . . . C T
blockSeqs : . . T . . . . . . . . . . A . TA . . . . . . C . . . . . . G . . . . C . . . . . . . . . . . . A A
blockSeqs : . . T . . . . . . . . . . T . TA . . . . . . T . . . . . . T . . . . C . . . . . . . . . . . . A A
blockSeqs : . . A . . . . . . . . . . A . TA . . . . . . C . . . . . . G . . . . T . . . . . . . . . . . . A A
blockSeqs : . . G . . . . . . . . . . C . TC . . . . . . T . . . . . . T . . . . T . . . . . . . . . . . . C .
blockSeqs : . . T . . . . . . . . . . A . TC . . . . . . C . . . . . . A . . . . A . . . . . . . . . . . . A .
blockSeqs : . . G . . . . . . . . . . A . GC . . . . . . T . . . . . . T . . . . C . . . . . . . . . . . . A
blockSeqs : . . G . . . . . . . . . . T . TA . . . . . . T . . . . . . A . . . . T . . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . T . GC . . . . . . C . . . . . . G . . . . C . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . A . GC . . . . . . C . . . . . . G . . . . C . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . A . TC . . . . . . T . . . . . . G . . . . C . . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . G . TC . . . . . . T . . . . . . G . . . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . T . . . . . . T . . . . . . G . . . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . . . T . . . . . . . . . . . C . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
finalCons : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
Alignments
lowQualScore : 11111111
lowQualScore : 4444 2 777 1 1 1 3 1 5555555 1 22 3 55 4 1 99999999 1 1 1 1 1 3 444 22 1 3 22 1 1 888 222 44 00000000 1 22 5555 44 3 222 1 1 1 1 66666666 1 1 2 1 1
lowQualScore : .... . ... . . . . . ....... . .. . .. . . ........ . . . . . . ... .. . . .. . . ... ... .. ........ . .. .... .. . ... . . . . ........ . . . . .
lowQualScore : 5555 0 444 8 8 7 5 7 7777777 7 44 5 99 4 7 11111111 7 7 7 7 7 5 000 44 7 5 33 7 7 111 999 00 66666666 7 99 2222 00 3 999 7 7 7 7 00000000 8 9 1 0 6
consensus : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
Reference ( family-751 ) : TTTCATTT----AAT-TN--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TNAAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATANAACCAGA
gi|78247 : TTTCATTT----AAT-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--AAA-TGAA--TAAAGTAA-A----TC--TC-C-A-T-C-A-CT-T-AT--AG-CT-A--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAACCC-ACAC-ATAAAACCAGA
gi|78248 : TTTCATTT----AAT-TT--GAT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TGAA--TTAAGT-A-A----TA--TT-C-A-T-C-A-CT-C-AT--AG-TT-G--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT--TTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78249 : TTTCATTT----AAT-TT--GAT-T-TAATTT-A-A-T-------T-TAGTA--AAA-TGAA--TTCAGTAA-A----TC--TC-C-A-T-C-A-CT-C-AT--AGATT-G--A-A-TGA--A---C--TA--------TGGA-CTCCAA----T--TTT-CTTTCCATT-----TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78250 : TTCCATTT----AAC-TG--GAT-G-TGTTTT-A-A-T-------T-TAGTA--AAA-TGAA--TAAAGTAA-A----TC--TC-C-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-ATCCAA----T--TTT-CTTTCCATTTC---TT-G-T-CA-T--------C-TAATCC-ACAC-ATAAAACCAGA
gi|78251 : TTTCATTT----AAAATT--GAT-G-TATTTT-A-A-T-------T-TAGCA--AAAATGAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-GT-C-ATTTAG-TTTG--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT-CTTT-CATTTG---TT-G-T-C--T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78252 : TTTCATTT----AAT-TT--GAT-G-TATTT--A-A-T-------T-TAGTA--AAA-TGAA--TTAAGTAA-A----TAAATC-C-A-T-C-A-CTTC-AT--AG-TT-G--A-A-TA---A---C--TA--------T-GA-TTCCA-----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-CAAC-ATACAA
gi|78253 : TTTCATTT----AAT-TT--GATTG-TATTTT-A-A-T-------T-TAGTA--AAG--AAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-CT-C--T--AG-TT-G--A-A-TAT--A---C--TA--------T-GA-TTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-A-AC-ATATA
gi|78254 : TTTCATTT----AAT-TT--GAT-G-TACTTT-ACA-T-------T-TACTA--AAA-T-AA--T-AAGTAA-A----TA--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--A-T-T----A---C--TA--------T-GA---TCAA----T--TTT-CTTTCCATTTG---TT---T-CA-T--------C-TAA-CC-ACAC-ATACAACCAGAca
gi|78255 : TTTCATTT----AAT-TA---AT-G-TATTTT-A-A-T-------T-TAGTA--AAATTGAA--TTAAGTAA-A----TA--TC-C-A-T-CAA-CTAC-AT--AG-TTAG--A-AGTAT--A---C--TA--------T-GA-TTCCAA----T--TTTCCTTTCCATTTG---TT-G-T-CA-T--------A-CAACC
gi|78256 : TTTCATTT----AAT-TTT-GAT-G-TAATTT-A-AAT-------T-TAGTA--AAA-T-AA--TTAAGTAA-------T--TC-C-A-T-C-A-C----AT--AG-TT-G--A-A-TAGG-A---C--TA--------T-GA-CTCCAA----T--TTTTCTTTCCATTTG---CT-G-T-CA-T----------TAAT-C-ACACAATACACCAAGAagaggtaca
gi|78257 : TTTTATTT----ACC-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--AAA-TAAA--TACAGTAACA----TC---C-C-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GG-CTCCAATCTTT--TTT-TTTCCCATTTC---TT-G-T-TA-T--------C-TAATCC-ACAC-ATTAATCCAGA
gi|78258 : TTTCATTT----AAT-TT---AT-G-TATTTT-A-A-T-------T-TAGTA--AAA-TAGA--TTAAGTAA-A--------TC-C-A-T-C-A----C-AT---G-TA-G--A-A-TAT--A------TA--------T--A-TTCCAA----T--TTT-CTTT-CATTT----TT-G-T-CATT--------C-TAATCC-ACA--ATAAA--CAGA
gi|78259 : TTTCATTTTTAAAAT-TG--GAT-G-TATTTT-G-A-T-------T-TAGTA--TTA-TGAA--TAAAGTAA-A----TC--CC-C-A-T-C-A-CA-T-AT--AG-TT-G--A-A-TAG-------------------------------------TTT-CTTTCCAT------TT-G-A-CA-T--------C-TAATCC-AAAT-ATA
gi|78260 : TTTCTTTT----AAT-TTT-GAT-G-TCTTCT------------------TA--AAT-T-----TCTAGAAA-A----TCG-TC-C-AAT-C-AACT-C-AT--AG-AT-G--A-A-TAT--A---CC-TA--------T-GA-TTCCAA----T--TT--CTTTCCATTTG---TT-GGT-CA-T--------C-TAATCCAACAC--TAAA--CAGA
gi|78261 : TCCATTT----AAT-TG--GAT-A-TATTTT-G-A-T-------T-TAGT---AAA-TGAA--TACAGTAA-A----T---TC-C-----T-A-CT-T-AT--AG-TT-G--A-G-T-----------T---------T-GA-ATCCAA----T--TTT-CTAATCATTTT---TC-G-A-CA-T--------
gi|78262 : ATTT----ACC-TG--GAT-G-TATTTT-T-A-T-------T-TAGTA--AAA-GGAA--TACAATAA-C----GC--TC-T-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAA--A---C--AC--------T-GG-CTCCAA----TC-TTT-TTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACA
gi|78263 : TTC----AAT-TT--GAT-G-TATT---A-A-T----------AGTATAAAA-TGAA--TTAAGTAA-A----TA--TC-C-A-T-C-A-CT-C-AT--AG-T--G--A-A-TAT--A---C--TAGTG-----T-GAATTCCAA----T--TTT-CTTTCCATTTG---TT-G-T-CA-T--------C-TAATCC-ACAC-ATACAACCAGA
gi|78264 : TTT----GAT-TT--T-T-G-TATTTTTA-A-T-------T-TAGTA--AAA-TGAAA-TTAAGTAA-AAA--TC--TC-C-A-T-C-A-CT-C-AT--AG-TT-G--ATA-TAATTA---C--TAT-------T-GA-TTCCAA----T--TTT-CTTT-CATTTG---TT-G-T-CA-G--------T-CAATCC-ACAT-A
gi|78265 : -TG--GAT-G-TTTTTT-TTA-T-------T-TAGTA--AAA-GGAA--TACAATAA-C----GC--TC-T-A-T-C-A-CT-TTAT--AG-TT-G--A-A-TAA--A---CACT---------T-GG-CTCCAA----TCTTTT-TTTTCCATTTG---TT-G-T-CA-T--------CATAATCC-ACA
gi|78266 : tttagatttccT----AAT-TATGGAT-G-TATTA--A-A-T-------T-TAGTA--AAA-TGAAAATAAAGTAA-AATTTTC--TC-CCA-T-T-A-CT-T-AT--AG-TT-G--A-A-TAG--G---C--TAAAAGGCTAT-GA-CTC-AA----T--TT--CTTTCCATTTG---TT-G-T-CA-TCTATAATAC-TAATCC-ACAC-ACA
gi|78267 : --GAT-GGTATTTT-A-A-T-------T-TAGTA--AAA-TGAAA-TGCAGTAA-C----GC--TCAC-A-T-C-A-CT-T-AT--AG-TT-G--A-T-CAG--A---C--AA--------T-GG-CT-CAA----T--CTT-TTTTCCCATTG---AT-A-T-CA-T--------
gi|78268 : AT-G-TATTTC-A-A-TATACAGCTGTAGTA--AAA-TGAA--TAAAGTAA-A----TC--TG-G-A-T-C-A-CT-T-AT--AG-TT-G--A-A-TAG--A---C--TA--------T-GA-CTCCAA----T--TTT-CTTTCTATTTG---TT-G-T-CA-T--------T-TAATGC-ACAC-ATAAAACCAGA
gi|78269 : TTT-A-A-A-------T-TAGTA--CAA-TGAA--T-AAGTAA-A----TC--TC-C-A-TTC-ATCT-T-AT--AG-TT-GTGA-T-TAG--AGGAC--TA--------T-GA-CTCCAAG---T--TTT-CTTTCCATTTGCTTTT-G-T-CA-T--------C-TGTCCC-ACAC-A
gi|78270 : --A-A-GAG--A---C--T---------T-GA-CTCCAA----T--TTT-CTTTCCATTTG---TTCG-TCCA-T--------C-TAATGC-ACAC-ATAAAACCAGA