lowQualScore : 222222222222222 111111111 1 111 1 2222 11
lowQualScore : 888888888888888 2 000000000 0 555 66666 333 666 0 777777 0 5555 1 1 1 44444 22 0 3 7777
lowQualScore : ............... . ......... . ... ..... ... ... . ...... . .... . . . ..... .. . . ....
lowQualScore : 333333333333333 1 555555555 9 999 55555 333 666 4 000000 1 6666 7 7 7 33333 55 8 6 0000
consensus : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT---------CATTTAG--CGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGAGTTGA-AAAA-GTG-TGC-----A-ATTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
Reference ( gi|73822 ) : ACTGAATTTAAAGGATT-------------TTCACA-ATTTAT---------CATTTCG--CGTGAATTTT----GATGTAC---AGGCATG-ACAG-----CGTGAATGGTATTGA-AAAA-GTG-TGC-----A-TTTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73812 : ACTGAATTTAAAGGATT-------------TGCAGA-ATTTAT---------CATTTCG--CGTGAATTTT----TGTGTAC---AGGCGTG-ACAG-----CGCGAATGCAGTTGA-AAAA---G-TGC-----A-TATTTTTGTAC-AATCTGTAC----ATATCACATGTATG
gi|73817 : agACTGAATTTATATGATT-------------TCCACA-ATTAATT--------CATTTCAATTGTGAATTT-----GA-GTAC---AGGCGTG-ACAG-----CGTGAATGGTGTTGA-AAAG-GTG-TGC-----A-ATTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73823 : agACTGAATTTAAAGGATT-------------TGCACA-ATTTAC---------CATTTAG--TGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTAA-AAAA-GTG-TAC-----A-TTTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73813 : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT---------CATTTAG--CATGAAATTT----GGTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAA-AAAA-GTG-TAC-----A-TTTTTTTCTAC-AGCCTGTAC----ATATCACATGTATG
gi|73815 : agACTCAATTTAAAGGATT-------------TGCACA-ATTTAT---------CATTTAG--CGTGAATTTT----GTTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAA-GAAA-GTG-TAC-----A-TTTTTTTGTAC-AGTCTGTAC----ATATCACATGCA
gi|73814 : agACTGGATTTAAAGGATT-------------TGCACA-ATTTAT---------CATTTAG--TGTGAATTTT----GGTGTAC---AGTC-TGTACAT-----CGTGAATTCAATTAA-AAAA-ATG-TAC-----ATTTTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73816 : agACAGAATTTAAGGG-TT-------------GGCACA-ATTTAT---------CATTTAG--AGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTGA-AAAA-GTG-TAC-----A--TTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73818 : agACTGAATTTAAAGGATT-------------TGCTCA-ATTTAT---------CCTTTTG--TGTGAATTTG----GATGCAC---AAGTGTG-ACAG-----CG--------GTTGA-AAAA-GTG-TGC-----A-AATATTTGTAC-AGTCTGTACAT--ATATCACATGTAT
gi|73819 : agACTGAATTTATAGGACTAGAC---------CTCAAA-ATCTGTACATTTTTCCATTTAG--AGTGAATTTT----AATGTAC---AGAAGTG-ACAG-----AGTGAACAGGGATGA-AAAA-GTG-TGC-----A-ATTTTGTGTAC-AGTCTGTAC----ATATCATATGTATG
gi|73821 : agACTGAATTTATAGGACTAGACCTGAAAATCTGTACA-ATTTAT---------CATTTAG--AGTGAATTTTTTAAAATGTAC---AGGAGTG-ACAA-----AGTGAATAGGGTTGA-AAAA-GTG-TGC-----A-AATTTGTGTAC-AGGCTGTACATGTATATCACATGTATG
gi|73820 : gACTAAATCTAAGAAATC-------------GGCAAATATTTAT---------CATCGAG--AGTAAATTTT----ATTGTAC---AGGAGTG-ACAG-----AGTGAACAGGGTTGA-AAAG-GTG-TTC-----A-ATGTTGTGTAC-AGTCTGTAC----ATATCACAT
gi|73824 : agACTAAACCTGAAA-ATG-------------TGTACA-ATTCAA---------CATTTAG--AGTGAATTTT----AATGTGC---ATGAGTA-ACAG-----AGTGAACAGGGTTGA-AAAA---G-TGC-----A-ATTTTGTGAAC-AGTTTTTAC----ATATCACATGTTTG
gi|73825 : CTGAATTTAATGGGTT-------------TGCACA-ATTTAT---------CATTTAG--CATGAATTTT----GATGTAC---AGGCATT-ACAG-----CGTGAATTCAGTTGA-AAAA-GTG-TAC-----
gi|73826 : TTTAAAGAATT-------------TGCACA-ATTTAT---------CATTTAG--CCTGAATTTT----GA-ATTC---A--------------------------ATTAA-AAAATGTG-TAC-----A-TTTTTTTGTA---GTCTTTAA----ATATCACATGTATG
gi|73827 : AAGGATT-------------TGCACG-ATTTAT---------CATTTAG--CGGGAATTTT----TGTGTAC---AGTC-TGTACAG-----TGTGAATTCAATTAA-GAAA-GTG-TAC-----A--TTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73828 : ACA-ATTTAT---------CATTTTG--AGTGAATTTT----AATGTAC---AGGAGTG-ACAG-----AGTTAATAGGGTTGA-AAAA-GCG-TGC-----A-ATTTTGTGTAC-AATCTGTAC----ATATCACATGCA
gi|73829 : atctgtACA-ATTTAT---------CATTTAG--AGTGAATATT----AATGCAC---GGGAGTG-ACAG-----AGGGAATGG-GTTG--GAAA-GTG-TGT-----A-ATTTTGTATAC-AGTCTGTA
gi|73830 : atctgaACA-ATTTTT---------CATTATG--CATAAATTTT-----ATGTAC---AGGTATG-ACCG-----CGTGAATGGGGATGA-AAAA-GCG-TG------A------TTGTACTAATC---AC----ATA
gi|73831 : atctatCA-ATTTAT---------CATTTAG--AATGAATTTT-----ATGTACATTAGGAGTA-AGAG------G-GAACGG--GTGAGAAAA-GTT-GGC-----A-TTTTGGTGAACAAGTCTG-A-----ATATCACAT
gi|73832 : G--CGTGAATTTT----ATTGTAC---AG-CGTG-A-----------GAATGGG--TGA-AAAA-GTG-TGC-----A-ATTTTTTGTAC-AGGCTGTAC----AAATAACATGTGT
gi|73833 : aTTT----GATGTAC---AGGTGTG-ACAG-----CGTGAATGG-GTTGA-AAAA-GTG-TGC-----T-ATTTTTTGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73834 : GACATG-ACAGATTTTCGTGAATAGAGTTGA-AAAA-GTGTTGCAAATTA-TTTTTGTGTAC-AGTCT
gi|73835 : TG-ACAG-----AGGGAACGGAATTAA-AAAA-GTG-CAC-----A-ATACTGCGTAC-TGTCTTTAC----ATATCGCATGTATG
Alignments
lowQualScore : 2222222222222 1
lowQualScore : 3333333333333 2 2 22 2 66666 333 888 0 666666 555 1 1 88888 1 3 6666
lowQualScore : ............. . . .. . ..... ... ... . ...... ... . . ..... . . ....
lowQualScore : 2222222222222 0 0 66 6 99999 222 222 0 333333 222 7 7 66666 7 5 7777
consensus : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGGGTTGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
Reference ( family-740 ) : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGAGTTGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73812 : ACTGAATTTAAAGGATT-------------TGCAGA-ATTTAT-CATTT--CGCGTGAATTTT----TGTGTAC---AGGCGTG-ACAG-----CGCGAATGCAGTTGAAAAA-GTG-CATA------TTTT-TGTAC-AATCTGTAC----ATATCACATGTATG
gi|73813 : agACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCATGAAATTT----GGTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAAAAAA-GTG-TACA----TTTTTT-TCTAC-AGCCTGTAC----ATATCACATGTATG
gi|73814 : agACTGGATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGTGTGAATTTT----GGTGTAC---AGTC-TGTACAT-----CGTGAATTCAATTAAAAAA-ATG-TACAT---TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73815 : agACTCAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GTTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAAGAAA-GTG-TACA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGCA
gi|73816 : agACAGAATTTAAGGG-TT-------------GGCACA-ATTTAT-CATTT--AGAGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTGAAAAA-GTG-TAC-----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73817 : agACTGAATTTATATGATT-------------TCCACA-ATTAATTCATTTCAATTGTGAATTT-----GA-GTAC---AGGCGTG-ACAG-----CGTGAATGGTGTTGAAAAG-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73818 : agACTGAATTTAAAGGATT-------------TGCTCA-ATTTAT-CCTTT--TGTGTGAATTTG----GATGCAC---AAGTGTG-ACAG-----CG--------GTTGAAAAA-GTG-TGCA----AATATT-TGTAC-AGTCTGTACAT--ATATCACATGTAT
gi|73819 : agACTGAATTTATAGGACTAGACCTCAAAATCTGTACA-TTTTTC-CATTT--AGAGTGAATTTT----AATGTAC---AGAAGTG-ACAG-----AGTGAACAGGGATGAAAAA-GTG-TGCA----ATTTTG-TGTAC-AGTCTGTAC----ATATCATATGTATG
gi|73820 : agACTAAATCTAAGAAATC-------------GGCAAATATTTAT-CATCG--AGAGTAAATTTT----ATTGTAC---AGGAGTG-ACAG-----AGTGAACAGGGTTGAAAAG-GTG-TTCA----ATGTTG-TGTAC-AGTCTGTAC----ATATCACAT
gi|73821 : agACTGAATTTATAGGACTAGACCTGAAAATCTGTACA-ATTTAT-CATTT--AGAGTGAATTTTTTAAAATGTAC---AGGAGTG-ACAA-----AGTGAATAGGGTTGAAAAA-GTG-TGCA----AATTTG-TGTAC-AGGCTGTACATGTATATCACATGTATG
gi|73822 : gACTGAATTTAAAGGATT-------------TTCACA-ATTTAT-CATTT--CGCGTGAATTTT----GATGTAC---AGGCATG-ACAG-----CGTGAATGGTATTGAAAAA-GTG-TGCA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73823 : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAC-CATTT--AGTGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTAAAAAA-GTG-TACA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73824 : ACTAAACCTGAAA-ATG-------------TGTACA-ATTCAA-CATTT--AGAGTGAATTTT----AATGTGC---ATGAGTA-ACAG-----AGTGAACAGGGTTGAAAAA---G-TGCA----ATTTTG-TGAAC-AGTTTTTAC----ATATCACATGTTTG
gi|73825 : CTGAATTTAATGGGTT-------------TGCACA-ATTTAT-CATTT--AGCATGAATTTT----GATGTAC---AGGCATT-ACAG-----CGTGAATTCAGTTGAAAAA-GTG-TAC
gi|73826 : TTTAAAGAATT-------------TGCACA-ATTTAT-CATTT--AGCCTGAATTT----------------------------------TGAATTCAATTAAAAAATGTG-TACA----TTTTTT-TGT---AGTCTTTAA----ATATCACATGTATG
gi|73827 : AAGGATT-------------TGCACG-ATTTAT-CATTT--AGCGGGAATTTT----TGTGTAC---AGTC-TGTACAG-----TGTGAATTCAATTAAGAAA-GTG-TAC-----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73828 : ATC-------------TGTACA-ATTTAT-CATTT--TGAGTGAATTTT----AATGTAC---AGGAGTG-ACAG-----AGTTAATAGGGTTGAAAAA-GCG-TGCA----ATTTTG-TGTAC-AATCTGTAC----ATATCACATGCA
gi|73829 : ATC-------------TGAACA-ATTTAT-CATTT--AGAGTGAATATT----AATGCAC---GGGAGTG-ACAG-----AGGGAATGG-GTTG-GAAA-GTG-TGTA----ATTTTG-TATAC-AGTCTGTA
gi|73830 : ATC-------------TATACA-ATTTTT-CATTA--TGCATAAATTTT-----ATGTAC---AGGTATG-ACCG-----CGTGAATGGGGATGAAAAA-GCG-TG-A---------T-TGTACTAATC---AC----ATA
gi|73831 : CA-ATTTAT-CATTT--AGAATGAATTTT-----ATGTACATTAGGAGTA-AGAG------G-GAA-CGGGTGAGAAAA-GTT-GGCA----TTTTGG-TGAACAAGTCTG-A-----ATATCACAT
gi|73832 : --AGCGTGAATTTT----ATTGTAC---AG-CGTG-A-----------GAATGGG--TGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGGCTGTAC----AAATAACATGTGT
gi|73833 : TTT----GATGTAC---AGGTGTG-ACAG-----CGTGAATGG-GTTGAAAAA-GTG-TGCT----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73834 : GACATG-ACAGATTTTCGTGAATAGAGTTGAAAAA-GTGTTGCAAATTATTTTTGTGTAC-AGTCT
gi|73835 : GTG-ACAG-----AGGGAACGGAATTAAAAAA-GTG-CACA----ATACTG-CGTAC-TGTCTTTAC----ATATCGCATGTATG
Alignments
lowQualScore : 2222222222222 1
lowQualScore : 3333333333333 2 2 22 2 66666 333 888 0 666666 55 1 1 88888 1 3 6666
lowQualScore : ............. . . .. . ..... ... ... . ...... .. . . ..... . . ....
lowQualScore : 2222222222222 0 0 66 6 99999 222 222 0 333333 22 7 7 66666 7 5 7777
consensus : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGGGTTGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
Reference ( family-740 ) : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGGGTTGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73812 : ACTGAATTTAAAGGATT-------------TGCAGA-ATTTAT-CATTT--CGCGTGAATTTT----TGTGTAC---AGGCGTG-ACAG-----CGCGAATGCAGTTGAAAAA-GTG-CATA------TTTT-TGTAC-AATCTGTAC----ATATCACATGTATG
gi|73813 : agACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCATGAAATTT----GGTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAAAAAA-GTG-TACA----TTTTTT-TCTAC-AGCCTGTAC----ATATCACATGTATG
gi|73814 : agACTGGATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGTGTGAATTTT----GGTGTAC---AGTC-TGTACAT-----CGTGAATTCAATTAAAAAA-ATG-TACAT---TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73815 : agACTCAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GTTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAAGAAA-GTG-TACA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGCA
gi|73816 : agACAGAATTTAAGGG-TT-------------GGCACA-ATTTAT-CATTT--AGAGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTGAAAAA-GTG-TAC-----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73817 : agACTGAATTTATATGATT-------------TCCACA-ATTAATTCATTTCAATTGTGAATTT-----GA-GTAC---AGGCGTG-ACAG-----CGTGAATGGTGTTGAAAAG-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73818 : agACTGAATTTAAAGGATT-------------TGCTCA-ATTTAT-CCTTT--TGTGTGAATTTG----GATGCAC---AAGTGTG-ACAG-----C--------GGTTGAAAAA-GTG-TGCA----AATATT-TGTAC-AGTCTGTACAT--ATATCACATGTAT
gi|73819 : agACTGAATTTATAGGACTAGACCTCAAAATCTGTACA-TTTTTC-CATTT--AGAGTGAATTTT----AATGTAC---AGAAGTG-ACAG-----AGTGAACAGGGATGAAAAA-GTG-TGCA----ATTTTG-TGTAC-AGTCTGTAC----ATATCATATGTATG
gi|73820 : agACTAAATCTAAGAAATC-------------GGCAAATATTTAT-CATCG--AGAGTAAATTTT----ATTGTAC---AGGAGTG-ACAG-----AGTGAACAGGGTTGAAAAG-GTG-TTCA----ATGTTG-TGTAC-AGTCTGTAC----ATATCACAT
gi|73821 : agACTGAATTTATAGGACTAGACCTGAAAATCTGTACA-ATTTAT-CATTT--AGAGTGAATTTTTTAAAATGTAC---AGGAGTG-ACAA-----AGTGAATAGGGTTGAAAAA-GTG-TGCA----AATTTG-TGTAC-AGGCTGTACATGTATATCACATGTATG
gi|73822 : gACTGAATTTAAAGGATT-------------TTCACA-ATTTAT-CATTT--CGCGTGAATTTT----GATGTAC---AGGCATG-ACAG-----CGTGAATGGTATTGAAAAA-GTG-TGCA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73823 : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAC-CATTT--AGTGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTAAAAAA-GTG-TACA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73824 : ACTAAACCTGAAA-ATG-------------TGTACA-ATTCAA-CATTT--AGAGTGAATTTT----AATGTGC---ATGAGTA-ACAG-----AGTGAACAGGGTTGAAAAA---G-TGCA----ATTTTG-TGAAC-AGTTTTTAC----ATATCACATGTTTG
gi|73825 : CTGAATTTAATGGGTT-------------TGCACA-ATTTAT-CATTT--AGCATGAATTTT----GATGTAC---AGGCATT-ACAG-----CGTGAATTCAGTTGAAAAA-GTG-TAC
gi|73826 : TTTAAAGAATT-------------TGCACA-ATTTAT-CATTT--AGCCTGAATTT----------------------------------TGAATTCAATTAAAAAATGTG-TACA----TTTTTT-TGT---AGTCTTTAA----ATATCACATGTATG
gi|73827 : AAGGATT-------------TGCACG-ATTTAT-CATTT--AGCGGGAATTTT----TGTGTAC---AGTC-TGTACAG-----TGTGAATTCAATTAAGAAA-GTG-TAC-----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73828 : ATC-------------TGTACA-ATTTAT-CATTT--TGAGTGAATTTT----AATGTAC---AGGAGTG-ACAG-----AGTTAATAGGGTTGAAAAA-GCG-TGCA----ATTTTG-TGTAC-AATCTGTAC----ATATCACATGCA
gi|73829 : ATC-------------TGAACA-ATTTAT-CATTT--AGAGTGAATATT----AATGCAC---GGGAGTG-ACAG-----AGGGAAT-GGGTTG-GAAA-GTG-TGTA----ATTTTG-TATAC-AGTCTGTA
gi|73830 : ATC-------------TATACA-ATTTTT-CATTA--TGCATAAATTTT-----ATGTAC---AGGTATG-ACCG-----CGTGAATGGGGATGAAAAA-GCG-TG-A---------T-TGTACTAATC---AC----ATA
gi|73831 : CA-ATTTAT-CATTT--AGAATGAATTTT-----ATGTACATTAGGAGTA-AGAG------G-GAA-CGGGTGAGAAAA-GTT-GGCA----TTTTGG-TGAACAAGTCTG-A-----ATATCACAT
gi|73832 : --AGCGTGAATTTT----ATTGTAC---AG-CGTG-A-----------GAATGGG--TGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGGCTGTAC----AAATAACATGTGT
gi|73833 : TTT----GATGTAC---AGGTGTG-ACAG-----CGTGAAT-GGGTTGAAAAA-GTG-TGCT----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73834 : GACATG-ACAGATTTTCGTGAATAGAGTTGAAAAA-GTGTTGCAAATTATTTTTGTGTAC-AGTCT
gi|73835 : GTG-ACAG-----AGGGAACGGAATTAAAAAA-GTG-CACA----ATACTG-CGTAC-TGTCTTTAC----ATATCGCATGTATG
blockSeqs : AGACCTCAAAATC T T CA C TTAAA ATT GCG T ATTTTC TC T T AATTA G T ATGT
blockSeqs : AGACCTGAAAATC . . . T G . GTG T C TC . . TT . A AT
blockSeqs : . . . . C G . AAG T C TC . . T . . .
blockSeqs : . . . . A G . GAG T C TC . . T . . .
blockSeqs : . . . . T G . GAG T C GG . . A . . .
blockSeqs : . . . . T G . GCA T C AG . . A . . .
blockSeqs : . . . . A G . GAG . C AG . . A . . .
blockSeqs : . . . . A A . GCA . A AG . . A . . .
blockSeqs : . . . . A A . GAG . A GG . . A . . .
blockSeqs : . . . . C G . GAG . A TC . . A . . .
blockSeqs : . . . . T G . GTA . C AG . . T . . .
blockSeqs : . . . . A A . GAG . C TC . . T . . .
blockSeqs : . . . . C G . GTG . A TC . . A . . .
blockSeqs : . . . . C T . ACA . C TC . . T . . .
blockSeqs : . . . . C A . TC . T AG . . A . . .
blockSeqs : . . . . A A . TC . A GG . . A . . .
blockSeqs : . . . . A A . TC . A CG . . A . . .
blockSeqs : . . . . C G . TC . C GG . . T . . .
blockSeqs : . . . A . . TC . C AG . . A . . .
blockSeqs : . C . . TC . A GG . . A . . .
blockSeqs : . . CG . . G . . A . .
blockSeqs : . . . G . . . . .
blockSeqs : . . . . .
blockSeqCons : A****
originalCons : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGGGTTGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
finalCons : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGGGTTGAAAAA-GTG-TGCAA----TTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
Alignments
lowQualScore : 2222222222222 1
lowQualScore : 3333333333333 2 2 22 2 66666 333 888 0 666666 55 1 1 88888 1 3 6666
lowQualScore : ............. . . .. . ..... ... ... . ...... .. . . ..... . . ....
lowQualScore : 2222222222222 0 0 66 6 99999 222 222 0 333333 22 7 7 66666 7 5 7777
consensus : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGGGTTGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
Reference ( family-740 ) : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GATGTAC---AGGCGTG-ACAG-----CGTGAATNGGGTTGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73812 : ACTGAATTTAAAGGATT-------------TGCAGA-ATTTAT-CATTT--CGCGTGAATTTT----TGTGTAC---AGGCGTG-ACAG-----CGCGAATGCAGTTGAAAAA-GTG-CATA------TTTT-TGTAC-AATCTGTAC----ATATCACATGTATG
gi|73813 : agACTGAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCATGAAATTT----GGTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAAAAAA-GTG-TACA----TTTTTT-TCTAC-AGCCTGTAC----ATATCACATGTATG
gi|73814 : agACTGGATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGTGTGAATTTT----GGTGTAC---AGTC-TGTACAT-----CGTGAATTCAATTAAAAAA-ATG-TACAT---TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73815 : agACTCAATTTAAAGGATT-------------TGCACA-ATTTAT-CATTT--AGCGTGAATTTT----GTTGTAC---AGTC-TGTACAG-----CGTGAATTCAATTAAGAAA-GTG-TACA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGCA
gi|73816 : agACAGAATTTAAGGG-TT-------------GGCACA-ATTTAT-CATTT--AGAGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTGAAAAA-GTG-TAC-----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73817 : agACTGAATTTATATGATT-------------TCCACA-ATTAATTCATTTCAATTGTGAATTT-----GA-GTAC---AGGCGTG-ACAG-----CGTGAATGGTGTTGAAAAG-GTG-TGCA----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73818 : agACTGAATTTAAAGGATT-------------TGCTCA-ATTTAT-CCTTT--TGTGTGAATTTG----GATGCAC---AAGTGTG-ACAG-----C--------GGTTGAAAAA-GTG-TGCA----AATATT-TGTAC-AGTCTGTACAT--ATATCACATGTAT
gi|73819 : agACTGAATTTATAGGACTAGACCTCAAAATCTGTACA-TTTTTC-CATTT--AGAGTGAATTTT----AATGTAC---AGAAGTG-ACAG-----AGTGAACAGGGATGAAAAA-GTG-TGCA----ATTTTG-TGTAC-AGTCTGTAC----ATATCATATGTATG
gi|73820 : agACTAAATCTAAGAAATC-------------GGCAAATATTTAT-CATCG--AGAGTAAATTTT----ATTGTAC---AGGAGTG-ACAG-----AGTGAACAGGGTTGAAAAG-GTG-TTCA----ATGTTG-TGTAC-AGTCTGTAC----ATATCACAT
gi|73821 : agACTGAATTTATAGGACTAGACCTGAAAATCTGTACA-ATTTAT-CATTT--AGAGTGAATTTTTTAAAATGTAC---AGGAGTG-ACAA-----AGTGAATAGGGTTGAAAAA-GTG-TGCA----AATTTG-TGTAC-AGGCTGTACATGTATATCACATGTATG
gi|73822 : gACTGAATTTAAAGGATT-------------TTCACA-ATTTAT-CATTT--CGCGTGAATTTT----GATGTAC---AGGCATG-ACAG-----CGTGAATGGTATTGAAAAA-GTG-TGCA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73823 : ACTGAATTTAAAGGATT-------------TGCACA-ATTTAC-CATTT--AGTGTGAATTTT----GGTGTAC---AGTC-TGTACAG-----CATTAATTCAATTAAAAAA-GTG-TACA----TTTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73824 : ACTAAACCTGAAA-ATG-------------TGTACA-ATTCAA-CATTT--AGAGTGAATTTT----AATGTGC---ATGAGTA-ACAG-----AGTGAACAGGGTTGAAAAA---G-TGCA----ATTTTG-TGAAC-AGTTTTTAC----ATATCACATGTTTG
gi|73825 : CTGAATTTAATGGGTT-------------TGCACA-ATTTAT-CATTT--AGCATGAATTTT----GATGTAC---AGGCATT-ACAG-----CGTGAATTCAGTTGAAAAA-GTG-TAC
gi|73826 : TTTAAAGAATT-------------TGCACA-ATTTAT-CATTT--AGCCTGAATTT----------------------------------TGAATTCAATTAAAAAATGTG-TACA----TTTTTT-TGT---AGTCTTTAA----ATATCACATGTATG
gi|73827 : AAGGATT-------------TGCACG-ATTTAT-CATTT--AGCGGGAATTTT----TGTGTAC---AGTC-TGTACAG-----TGTGAATTCAATTAAGAAA-GTG-TAC-----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73828 : ATC-------------TGTACA-ATTTAT-CATTT--TGAGTGAATTTT----AATGTAC---AGGAGTG-ACAG-----AGTTAATAGGGTTGAAAAA-GCG-TGCA----ATTTTG-TGTAC-AATCTGTAC----ATATCACATGCA
gi|73829 : ATC-------------TGAACA-ATTTAT-CATTT--AGAGTGAATATT----AATGCAC---GGGAGTG-ACAG-----AGGGAAT-GGGTTG-GAAA-GTG-TGTA----ATTTTG-TATAC-AGTCTGTA
gi|73830 : ATC-------------TATACA-ATTTTT-CATTA--TGCATAAATTTT-----ATGTAC---AGGTATG-ACCG-----CGTGAATGGGGATGAAAAA-GCG-TG-A---------T-TGTACTAATC---AC----ATA
gi|73831 : CA-ATTTAT-CATTT--AGAATGAATTTT-----ATGTACATTAGGAGTA-AGAG------G-GAA-CGGGTGAGAAAA-GTT-GGCA----TTTTGG-TGAACAAGTCTG-A-----ATATCACAT
gi|73832 : --AGCGTGAATTTT----ATTGTAC---AG-CGTG-A-----------GAATGGG--TGAAAAA-GTG-TGCA----ATTTTT-TGTAC-AGGCTGTAC----AAATAACATGTGT
gi|73833 : TTT----GATGTAC---AGGTGTG-ACAG-----CGTGAAT-GGGTTGAAAAA-GTG-TGCT----ATTTTT-TGTAC-AGTCTGTAC----ATATCACATGTATG
gi|73834 : GACATG-ACAGATTTTCGTGAATAGAGTTGAAAAA-GTGTTGCAAATTATTTTTGTGTAC-AGTCT
gi|73835 : GTG-ACAG-----AGGGAACGGAATTAAAAAA-GTG-CACA----ATACTG-CGTAC-TGTCTTTAC----ATATCGCATGTATG