lowQualScore : 1 2222222 11111
lowQualScore : 1 3 7777777 2 22 2 1 33333 3 1 66 222 33 888 3333333 11111 4444444 4 11 1 1 1 6 1 55 11 1 3 5555555 1 66666666 3 5 1
lowQualScore : . . ....... . .. . . ..... . . .. ... .. ... ....... ..... ....... . .. . . . . . .. .. . . ....... . ........ . . .
lowQualScore : 4 1 2222222 8 66 2 8 88888 1 5 77 777 77 111 1111111 44444 0000000 0 99 4 4 4 9 4 99 99 4 2 4444444 7 00000000 3 8 7
consensus : AAA-AAGAAGGA-------AAAATGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A-------TTAAG---AAAA-------AA-TATCG--C-G-A-T-ATA-TCG-CG--ATA-C-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
Reference ( gi|106805 ) : AAA-AAAAAAAA-------AAAATGCAATGTCCT--AGA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A-------TTAAG---AAAA-------AA-TATCG--T-G-A-T-ATA-TCA-CG--ATA-C-AAA-------A-T--------TTTTG-GTGA-TACCCATCCCTA
gi|106806 : AAA-GAGAAAAACAATGACAAAATGCAGTGTCCT--AGA-ATA-----TC-GCAATA-T-TA---TCACG--AT---A-------TTAAG---AAAA-------AA-TATCG--T-G-A-T-ATA-TCA-CG--ATA-C-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106807 : AAATAAGAGAAA-------AAAATGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A-------TAAGG---TAAA-------AA-TGTTG--T-G-A-T-ATA-TCT-TG--ATA-C-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106808 : AAATAAGAGAAA-------AAAATGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A-------TAAGG---TAAA-------AA-TGTTG--T-G-A-T-ATA-TCT-TG--ATA-C-AAA-------A-T--------TTTTG-GCAA-TA-CCATCCCTA
gi|106809 : AA-AAATAAGA-------AAAACCTAATGTCTT--CGA-ATA-----TC-GCGACA-T-TA---TCACA--AT---A-------TTAAG---AAAA-------AA-TATCA--T-G-A-T-ATA-TCA-CG--ATA-C-AAA-------A-T--------TTTTG-GCGA-TACCCAGCCCTA
gi|106810 : AA-AATAAGAA-------AAAATGCAATGTCCT--AAATATA-----TC-GTGATA-T-TA---TCACG--AT---A-------TTAAA---GAAA-------AG-TA-CG--T-G-A-T-ATA-TCA-CA--ATA-C-AAA-------A-T--------TTTTG-GCGA-TA
gi|106811 : A-AAAACAAA-------AAAACGCAATGTCCT--TGA-ATA-----TT-GTGATA---------CATG---T---A-------TTAAG---AAAA-------AA-TATTG--T-G-----ATA-TTG-CA--ATA-C-GAA-------A-T--------GCTTG-GCAA-TACC
gi|106812 : -AATAAAGA-------GAAATCT--TATTTT--AAA-ATA-----TTTGCGATA-CATA---TCGCA--AT---ACAT----TTGA-------A-------AA-TATCG--C-A-A-T-AT--TCGCCG--ATA-C-GAA-------A-T--------TTTTACCCGA-TACGCAGCCCTA
gi|106813 : AAGGAA-------AAACTGCAATGTCCT--AAA-ATA-----TT-GCGATA-T-TA---TCACG--AT---A-------TTAAG---AAAA-------AA-TATTG--G-G-A-T-ATA-TTG-CG--ATA-C-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCT
gi|106814 : AAGGA-------AAAATGCAATGTCCT--AAA-ATAAATTATT-GCGATA-T-TA---TCACG--AT---A-------TTAAG---AAAA-------AA-TATTG--T-G-A-T-ATA-TCG-CG--ATA-C-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106816 : AAGGA-------AAAATGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA-------TTAAG---AAAA-------AAATATTG--G-G-A-T-ATA-TCG-CA--ATA-C-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106815 : AAGGA-------AAAATGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA-------TTAAG---AAAA-------AAATATTG--G-G-A-T-ATA-TCG-CA--ATA-C-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106817 : AAGGA-------AAAATGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA-------TTAAG---AAAA-------AAATATTG--G-G-A-T-ATA-TCG-CA--ATA-A-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106818 : AAGG-------AAAATGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACGA-AT---A-------TTAAA---AAAA-------AA-TATTG--T-GAA-TAATA-TCAGAG--ATA-C-AAATTCTTCTA-A--------TCTTG-GCGA-TACCCATCCCTA
gi|106819 : AA-------AAACTGCAATGTC-T--AAA-ATA-----TCCGCGATAAT-TAATCTCACG--AT---A-------TTAAGGAAAAAA-------AA-TATTGCTC-G-ATT-ATA-TCG-CGCCATA-C-AAA-------ATT--------TTTTG-GCGACTACCCAACCC
gi|106820 : A-------AAAATACAATGTC-T--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A-------TTAAG---AAAA-------AA-TATTG--T-G-A-T-ATA--CG-CG--ATA-C-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106821 : A-------AAAATGCAATGTCCT--AAT-ATG-----TT-GCGAAA-T-TA---TCACG--GT---A-------TTAGG---TTAA-------CA-TATTG--G-G-A-T-ATA-TCG-CG--ATA-C-ACT-------T-T--------TTTTA-GCGA-TACCCATCCCTA
gi|106822 : A-------AAAATACAATGTCCT--AAA-ACA-----TC-GCAATA-T-TA---TCATG--AT---A-------TTAAG---AAAA-------AA-
gi|106823 : -------AAAATGCAATGTCCTTAAAG-ATA-----TC-GCGATA-T-TA---TCACG--AT---A-------TTAAG----AAA-------AA-TATTG--TAG-A-T-ATATTCG-TG--ATA-C--AA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106824 : --AAA-ATA-----TT-GCAATA-CGTA---TCGCA--GT---ACAT----TTGA-------A-------AA-TATCG--C-A-A-T-ATA-TCG-CG--ATA-CGAAA-------A-T--------TTCAC-CCGA-TACGCAGCCCT
gi|106825 : --AAA-ATA-----TT-GCAATA-CATA---TCGCA--AT---ACAT----TTGA-------A-------AA-TATCG--C-A-A-T-ATA-TCG-CG--ATG-CGAAA-------A-T--------TTTCA-ACGA-AACC
gi|106826 : --AAA-ATA-----TT-GCAATA-CATA---TCGCAGTAT---A-------TTTG------AA-------AA-TATGG--C-A-A-T-ATA-TCG-TG--ATACC-AAA-------A-T--------TTCTC-CAGA-TACACAGCCCTA
gi|106810 : A-ATA-----TC-GTGATA-A-TA---TCACG--AT---A-------T
gi|106806 : aaaataagaaaaaatgcaatgtcctaaatTA-----TC-GTGATA-T--A---TCACG--AT---ATTTTTTCTT-----------------AA-TATCG--T-G-A-TAATA-TTG-CG--ATA-aaagaaaagtacgtgatatatcacaatacaaaatttttggcgata
gi|106814 : aaagagaaaaacaatgacaaaatgcagtgtcctagaaTA-----TC-GCGATA---TA---TCACA--AT---ATTTTTTCTT-----------------AA-TATCG--T-G-A-TAATA-TCG-CA--ATA-caaaatttttggcgatacccatcccta
gi|106820 : aaggaaaaatgcaatgtcctaaaataaatTA-----TC-GCG-TA-T--A---TCACA--AT---A-------TT----------TTTTCTTAA-TATCG--T-G-A-TAATA-TCG-CG--ATA-caaaatttttggcgatacccatcccta
gi|106810 : aaaaatacaatgtctaaaaTA-----TT-GTGATA-T--A---TCACG---T---ACTTTTCTTTAA------------------TATCG--T-G-A-TAATA-TCA-CG--ATA-T-Acaaaatttttggcgatacccatcccta
gi|106827 : aaaataagaaaaaatgcaatgtcctaaaAA-------AA-TATTG--C-A-A-T-ATA-TCG-TG--ATA-C-GAA-------A-T--------TTTCACCCGA-TACACAGCCCTAcaaaatttttggcgata
gi|106828 : A-TATTG--T-G-A-T-ATA-TCG-CG--ATA-C-AAA-------A-TTCTTCTAATCTTG-GCGA-TACCCATCCCTA
gi|106806 : -TATCG--T-G-A-T-ATA-TCA-CG--ATA-T-------------T--------TTTTC-TTAA-TATC
gi|106809 : aaagagaaaaacaatgacaaaatgcagtgtcctagaatatcgcaatattatcac-TATCG--T-G-A-T-ATA-TCA-TG--ATA-caaaatttttggcgatacccatcccta
gi|106829 : aaaaataagaaaaacctaatgtcttcgaatatcgcgacattatcacaatattaagaaaaaa-TATTG--T-G-A-T-GTA-TCG-CG--ATA-T-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTAcaaaatttttggcgatacccagcccta
Alignments
lowQualScore : 1 1111111
lowQualScore : 0 7 2 2 2 22 1 44444 3 1 7 333 44 0000000 55555 4 1 7777 1 1 1 1 1 1 22 5 5555555 1 66666666 3 1
lowQualScore : . . . . . .. . ..... . . . ... .. ....... ..... . . .... . . . . . . .. . ....... . ........ . .
lowQualScore : 0 6 1 1 1 55 8 55555 6 8 3 222 33 1111111 55555 8 7 8888 7 7 7 7 7 7 33 0 4444444 7 00000000 3 7
consensus : AAA-AANAAGGA-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
Reference ( family-730 ) : AAA-AAGAAGGA-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106805 : AAA-AAAAAAAA-AAAA-TGCAATGTCCT--AGA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GTGA-TACCCATCCCTA
gi|106806 : AAA-AACAATGACAAAA-TGCAGTGTCCT--AGA-ATA-----TC-GCAATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106807 : aaagagAAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106808 : AAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TA-CCATCCCTA
gi|106809 : AAA-AATAAG-A-AAAA-CCTAATGTCTT--CGA-ATA-----TC-GCGACA-T-TA---TCACA--AT---A---TTAAG---AAAAAA-TATCA--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCAGCCCTA
gi|106810 : AA-AATAAGAA-AAAA-TGCAATGTCCT--AAATATA-----TC-GTGATA-T-TA---TCACG--AT---A---TTAAA---GAAAAG-TA-CG--T-G-A-T-ATA-TC-A-CA--ATAC-AAA-------A-T--------TTTTG-GCGA-TA
gi|106811 : AAA-AACAA--A-AAAA-CGCAATGTCCT--TGA-ATA-----TT-GTGATA---------CATG---T---A---TTAAG---AAAAAA-TATTG--T-G-----ATA-TT-G-CA--ATAC-GAA-------A-T--------GCTTG-GCAA-TACC
gi|106812 : -AATAAAGA-GAAA-TCT--TATTTT--AAA-ATA-----TTTGCGATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-AT--TC-GCCG--ATAC-GAA-------A-T--------TTTTACCCGA-TACGCAGCCCTA
gi|106813 : AAGGA-AAAACTGCAATGTCCT--AAA-ATA-----TT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--G-G-A-T-ATA-TT-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCT
gi|106814 : AAGGA-AAAA-TGCAATGTCCT--AAA-ATAAATTATT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106815 : AAGGA-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106816 : AAGGA-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106817 : AAGGA-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAA-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106818 : AAGGA-AAA--TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACGA-AT---A---TTAAA---AAAAAA-TATTG--T-GAA-TAATA-TCAG-AG--ATAC-AAATTCTTCTA-A--------TCTTG-GCGA-TACCCATCCCTA
gi|106819 : A-AAAC-TGCAATGTC-T--AAA-ATA-----TCCGCGATAAT-TAATCTCACG--AT---A---TTAAGGAAAAAAAA-TATTGCTC-G-ATT-ATA-TC-G-CGCCATAC-AAA-------ATT--------TTTTG-GCGACTACCCAACCC
gi|106820 : aA-AAAA-TACAATGTC-T--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA--C-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106821 : A-AAAA-TGCAATGTCCT--AAT-ATG-----TT-GCGAAA-T-TA---TCACG--GT---A---TTAGG---TTAACA-TATTG--G-G-A-T-ATA-TC-G-CG--ATAC-ACT-------T-T--------TTTTA-GCGA-TACCCATCCCTA
gi|106822 : A-AAAA-TACAATGTCCT--AAA-ACA-----TC-GCAATA-T-TA---TCATG--AT---A---TTAAG---AAAAAA-
gi|106823 : -AAAA-TGCAATGTCCTTAAAG-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG----AAAAA-TATTG--TAG-A-T-ATATTC-G-TG--ATAC--AA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106824 : --AAA-ATA-----TT-GCAATA-CGTA---TCGCA--GT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATACGAAA-------A-T--------TTCAC-CCGA-TACGCAGCCCT
gi|106825 : --AAA-ATA-----TT-GCAATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATGCGAAA-------A-T--------TTTCA-ACGA-AACC
gi|106826 : --AAA-ATA-----TT-GCAATA-CATA---TCGCAGTAT---A---TTTG------AAAA-TATGG--C-A-A-T-ATA-TC-G-TG--ATACCAAA-------A-T--------TTCTC-CAGA-TACACAGCCCTA
gi|106827 : AAAA-TATTG--C-A-A-T-ATA-TC-G-TG--ATAC-GAA-------A-T--------TTTCACCCGA-TACACAGCCCTA
gi|106828 : A-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-TTCTTCTAATCTTG-GCGA-TACCCATCCCTA
gi|106829 : -TATTG--T-G-A-T-GTA-TC-G-CG--ATAT-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
Alignments
lowQualScore : 1111111
lowQualScore : 1 777 2 2 2 22 1 44444 3 1 7 333 44 0000000 55555 4 1 7777 1 1 1 1 1 1 22 5 5555555 1 66666666 3 1
lowQualScore : . ... . . . .. . ..... . . . ... .. ....... ..... . . .... . . . . . . .. . ....... . ........ . .
lowQualScore : 0 888 1 1 1 55 8 55555 6 8 3 222 33 1111111 55555 8 7 8888 7 7 7 7 7 7 33 0 4444444 7 00000000 3 7
consensus : AAAAATAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
Reference ( family-730 ) : AAAAANAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106805 : AAAAAAAAAA---A-AAAA-TGCAATGTCCT--AGA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GTGA-TACCCATCCCTA
gi|106806 : AAAAACAATG---ACAAAA-TGCAGTGTCCT--AGA-ATA-----TC-GCAATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106807 : aaagagAAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106808 : AAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TA-CCATCCCTA
gi|106809 : AAAAATAAG----A-AAAA-CCTAATGTCTT--CGA-ATA-----TC-GCGACA-T-TA---TCACA--AT---A---TTAAG---AAAAAA-TATCA--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCAGCCCTA
gi|106810 : AAAATAAGA---A-AAAA-TGCAATGTCCT--AAATATA-----TC-GTGATA-T-TA---TCACG--AT---A---TTAAA---GAAAAG-TA-CG--T-G-A-T-ATA-TC-A-CA--ATAC-AAA-------A-T--------TTTTG-GCGA-TA
gi|106811 : AAAAACAA-----A-AAAA-CGCAATGTCCT--TGA-ATA-----TT-GTGATA---------CATG---T---A---TTAAG---AAAAAA-TATTG--T-G-----ATA-TT-G-CA--ATAC-GAA-------A-T--------GCTTG-GCAA-TACC
gi|106812 : AATAAAG---A-GAAA-TCT--TATTTT--AAA-ATA-----TTTGCGATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-AT--TC-GCCG--ATAC-GAA-------A-T--------TTTTACCCGA-TACGCAGCCCTA
gi|106813 : AAGG---A-AAAACTGCAATGTCCT--AAA-ATA-----TT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--G-G-A-T-ATA-TT-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCT
gi|106814 : AAGG---A-AAAA-TGCAATGTCCT--AAA-ATAAATTATT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106815 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106816 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106817 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAA-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106818 : AAGG---A-AAA--TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACGA-AT---A---TTAAA---AAAAAA-TATTG--T-GAA-TAATA-TCAG-AG--ATAC-AAATTCTTCTA-A--------TCTTG-GCGA-TACCCATCCCTA
gi|106819 : ---A-AAAC-TGCAATGTC-T--AAA-ATA-----TCCGCGATAAT-TAATCTCACG--AT---A---TTAAGGAAAAAAAA-TATTGCTC-G-ATT-ATA-TC-G-CGCCATAC-AAA-------ATT--------TTTTG-GCGACTACCCAACCC
gi|106820 : a---A-AAAA-TACAATGTC-T--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA--C-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106821 : ---A-AAAA-TGCAATGTCCT--AAT-ATG-----TT-GCGAAA-T-TA---TCACG--GT---A---TTAGG---TTAACA-TATTG--G-G-A-T-ATA-TC-G-CG--ATAC-ACT-------T-T--------TTTTA-GCGA-TACCCATCCCTA
gi|106822 : ---A-AAAA-TACAATGTCCT--AAA-ACA-----TC-GCAATA-T-TA---TCATG--AT---A---TTAAG---AAAAAA-
gi|106823 : -AAAA-TGCAATGTCCTTAAAG-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG----AAAAA-TATTG--TAG-A-T-ATATTC-G-TG--ATAC--AA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106824 : --AAA-ATA-----TT-GCAATA-CGTA---TCGCA--GT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATACGAAA-------A-T--------TTCAC-CCGA-TACGCAGCCCT
gi|106825 : --AAA-ATA-----TT-GCAATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATGCGAAA-------A-T--------TTTCA-ACGA-AACC
gi|106826 : --AAA-ATA-----TT-GCAATA-CATA---TCGCAGTAT---A---TTTG------AAAA-TATGG--C-A-A-T-ATA-TC-G-TG--ATACCAAA-------A-T--------TTCTC-CAGA-TACACAGCCCTA
gi|106827 : AAAA-TATTG--C-A-A-T-ATA-TC-G-TG--ATAC-GAA-------A-T--------TTTCACCCGA-TACACAGCCCTA
gi|106828 : A-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-TTCTTCTAATCTTG-GCGA-TACCCATCCCTA
gi|106829 : -TATTG--T-G-A-T-GTA-TC-G-CG--ATAT-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
Alignments
lowQualScore : 1111111
lowQualScore : 777 2 2 2 22 1 44444 3 1 7 333 44 0000000 55555 4 1 7777 1 1 1 1 1 1 22 5 5555555 1 66666666 3 1
lowQualScore : ... . . . .. . ..... . . . ... .. ....... ..... . . .... . . . . . . .. . ....... . ........ . .
lowQualScore : 888 1 1 1 55 8 55555 6 8 3 222 33 1111111 55555 8 7 8888 7 7 7 7 7 7 33 0 4444444 7 00000000 3 7
consensus : AAAAATAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
Reference ( family-730 ) : AAAAATAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106805 : AAAAAAAAAA---A-AAAA-TGCAATGTCCT--AGA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GTGA-TACCCATCCCTA
gi|106806 : AAAAACAATG---ACAAAA-TGCAGTGTCCT--AGA-ATA-----TC-GCAATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106807 : aaagagAAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106808 : AAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TA-CCATCCCTA
gi|106809 : AAAAATAAG----A-AAAA-CCTAATGTCTT--CGA-ATA-----TC-GCGACA-T-TA---TCACA--AT---A---TTAAG---AAAAAA-TATCA--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCAGCCCTA
gi|106810 : AAAATAAGA---A-AAAA-TGCAATGTCCT--AAATATA-----TC-GTGATA-T-TA---TCACG--AT---A---TTAAA---GAAAAG-TA-CG--T-G-A-T-ATA-TC-A-CA--ATAC-AAA-------A-T--------TTTTG-GCGA-TA
gi|106811 : AAAAACAA-----A-AAAA-CGCAATGTCCT--TGA-ATA-----TT-GTGATA---------CATG---T---A---TTAAG---AAAAAA-TATTG--T-G-----ATA-TT-G-CA--ATAC-GAA-------A-T--------GCTTG-GCAA-TACC
gi|106812 : AATAAAG---A-GAAA-TCT--TATTTT--AAA-ATA-----TTTGCGATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-AT--TC-GCCG--ATAC-GAA-------A-T--------TTTTACCCGA-TACGCAGCCCTA
gi|106813 : AAGG---A-AAAACTGCAATGTCCT--AAA-ATA-----TT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--G-G-A-T-ATA-TT-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCT
gi|106814 : AAGG---A-AAAA-TGCAATGTCCT--AAA-ATAAATTATT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106815 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106816 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106817 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAA-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106818 : AAGG---A-AAA--TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACGA-AT---A---TTAAA---AAAAAA-TATTG--T-GAA-TAATA-TCAG-AG--ATAC-AAATTCTTCTA-A--------TCTTG-GCGA-TACCCATCCCTA
gi|106819 : ---A-AAAC-TGCAATGTC-T--AAA-ATA-----TCCGCGATAAT-TAATCTCACG--AT---A---TTAAGGAAAAAAAA-TATTGCTC-G-ATT-ATA-TC-G-CGCCATAC-AAA-------ATT--------TTTTG-GCGACTACCCAACCC
gi|106820 : a---A-AAAA-TACAATGTC-T--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA--C-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106821 : ---A-AAAA-TGCAATGTCCT--AAT-ATG-----TT-GCGAAA-T-TA---TCACG--GT---A---TTAGG---TTAACA-TATTG--G-G-A-T-ATA-TC-G-CG--ATAC-ACT-------T-T--------TTTTA-GCGA-TACCCATCCCTA
gi|106822 : ---A-AAAA-TACAATGTCCT--AAA-ACA-----TC-GCAATA-T-TA---TCATG--AT---A---TTAAG---AAAAAA-
gi|106823 : -AAAA-TGCAATGTCCTTAAAG-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG----AAAAA-TATTG--TAG-A-T-ATATTC-G-TG--ATAC--AA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106824 : --AAA-ATA-----TT-GCAATA-CGTA---TCGCA--GT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATACGAAA-------A-T--------TTCAC-CCGA-TACGCAGCCCT
gi|106825 : --AAA-ATA-----TT-GCAATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATGCGAAA-------A-T--------TTTCA-ACGA-AACC
gi|106826 : --AAA-ATA-----TT-GCAATA-CATA---TCGCAGTAT---A---TTTG------AAAA-TATGG--C-A-A-T-ATA-TC-G-TG--ATACCAAA-------A-T--------TTCTC-CAGA-TACACAGCCCTA
gi|106827 : AAAA-TATTG--C-A-A-T-ATA-TC-G-TG--ATAC-GAA-------A-T--------TTTCACCCGA-TACACAGCCCTA
gi|106828 : A-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-TTCTTCTAATCTTG-GCGA-TACCCATCCCTA
gi|106829 : -TATTG--T-G-A-T-GTA-TC-G-CG--ATAT-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
blockSeqs : GAA C C C TA T AATTA T A A ATC GT ACAT GGAAA A C CTC A T A T A C CC G TTCTTCT T TCTTCTAA C C
blockSeqs : GAA . . A . . . C . G . A GATA GA A T TA . . . . . . . G . . . C .
blockSeqs : . . . A . . . . . A . . GATA GT A T T . . . . . . . C . . . . .
blockSeqs : . . . T . . . . . A . . GATA GT . C T . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . ACAT GA . C T . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . ACAT AG . T T . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . A GA . C T . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . A GA . T T . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . A GA . T C . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . A GA . T G . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . A GA . T T . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . . A GA . T G . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . A AA . T G . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . A GA . T G . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . A GT . T T . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . A GA . T T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A G . T G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . C C . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . C C . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . G C . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . T C . . . . . . . . . . . . .
blockSeqs : . T T . . . . . . . . . . . . .
blockSeqs : . T T . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : AAAAATAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
finalCons : AAAAATAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
Alignments
lowQualScore : 1111111
lowQualScore : 777 2 2 2 22 1 44444 3 1 7 333 44 0000000 55555 4 1 7777 1 1 1 1 1 1 22 5 5555555 1 66666666 3 1
lowQualScore : ... . . . .. . ..... . . . ... .. ....... ..... . . .... . . . . . . .. . ....... . ........ . .
lowQualScore : 888 1 1 1 55 8 55555 6 8 3 222 33 1111111 55555 8 7 8888 7 7 7 7 7 7 33 0 4444444 7 00000000 3 7
consensus : AAAAATAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
Reference ( family-730 ) : AAAAATAAGG---A-AAAA-TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--C-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106805 : AAAAAAAAAA---A-AAAA-TGCAATGTCCT--AGA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GTGA-TACCCATCCCTA
gi|106806 : AAAAACAATG---ACAAAA-TGCAGTGTCCT--AGA-ATA-----TC-GCAATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATCG--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106807 : aaagagAAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106808 : AAATAAGAGAAA-AAAA-TGCAATGTCAT--AGA-ATT-----TC-GTGATA-T-TA---TCACG--AT---A---TAAGG---TAAAAA-TGTTG--T-G-A-T-ATA-TC-T-TG--ATAC-AAA-------A-T--------TTTTG-GCAA-TA-CCATCCCTA
gi|106809 : AAAAATAAG----A-AAAA-CCTAATGTCTT--CGA-ATA-----TC-GCGACA-T-TA---TCACA--AT---A---TTAAG---AAAAAA-TATCA--T-G-A-T-ATA-TC-A-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCAGCCCTA
gi|106810 : AAAATAAGA---A-AAAA-TGCAATGTCCT--AAATATA-----TC-GTGATA-T-TA---TCACG--AT---A---TTAAA---GAAAAG-TA-CG--T-G-A-T-ATA-TC-A-CA--ATAC-AAA-------A-T--------TTTTG-GCGA-TA
gi|106811 : AAAAACAA-----A-AAAA-CGCAATGTCCT--TGA-ATA-----TT-GTGATA---------CATG---T---A---TTAAG---AAAAAA-TATTG--T-G-----ATA-TT-G-CA--ATAC-GAA-------A-T--------GCTTG-GCAA-TACC
gi|106812 : AATAAAG---A-GAAA-TCT--TATTTT--AAA-ATA-----TTTGCGATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-AT--TC-GCCG--ATAC-GAA-------A-T--------TTTTACCCGA-TACGCAGCCCTA
gi|106813 : AAGG---A-AAAACTGCAATGTCCT--AAA-ATA-----TT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--G-G-A-T-ATA-TT-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCT
gi|106814 : AAGG---A-AAAA-TGCAATGTCCT--AAA-ATAAATTATT-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106815 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106816 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAC-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106817 : AAGG---A-AAAA-TGCAATGTCTT--AAA-ATA-----TT-GCGATA-T-AA---TCACG--ATGATA---TTAAG---AAAAAAATATTG--G-G-A-T-ATA-TC-G-CA--ATAA-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA
gi|106818 : AAGG---A-AAA--TGCAATGTCCT--AAA-ATA-----TC-GCGATA-T-TA---TCACGA-AT---A---TTAAA---AAAAAA-TATTG--T-GAA-TAATA-TCAG-AG--ATAC-AAATTCTTCTA-A--------TCTTG-GCGA-TACCCATCCCTA
gi|106819 : ---A-AAAC-TGCAATGTC-T--AAA-ATA-----TCCGCGATAAT-TAATCTCACG--AT---A---TTAAGGAAAAAAAA-TATTGCTC-G-ATT-ATA-TC-G-CGCCATAC-AAA-------ATT--------TTTTG-GCGACTACCCAACCC
gi|106820 : a---A-AAAA-TACAATGTC-T--AAA-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG---AAAAAA-TATTG--T-G-A-T-ATA--C-G-CG--ATAC-AAA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106821 : ---A-AAAA-TGCAATGTCCT--AAT-ATG-----TT-GCGAAA-T-TA---TCACG--GT---A---TTAGG---TTAACA-TATTG--G-G-A-T-ATA-TC-G-CG--ATAC-ACT-------T-T--------TTTTA-GCGA-TACCCATCCCTA
gi|106822 : ---A-AAAA-TACAATGTCCT--AAA-ACA-----TC-GCAATA-T-TA---TCATG--AT---A---TTAAG---AAAAAA-
gi|106823 : -AAAA-TGCAATGTCCTTAAAG-ATA-----TC-GCGATA-T-TA---TCACG--AT---A---TTAAG----AAAAA-TATTG--TAG-A-T-ATATTC-G-TG--ATAC--AA-------A-T--------TTTTG-GCGA-TACCCATCCCTA
gi|106824 : --AAA-ATA-----TT-GCAATA-CGTA---TCGCA--GT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATACGAAA-------A-T--------TTCAC-CCGA-TACGCAGCCCT
gi|106825 : --AAA-ATA-----TT-GCAATA-CATA---TCGCA--AT---ACATTTGA-------AAA-TATCG--C-A-A-T-ATA-TC-G-CG--ATGCGAAA-------A-T--------TTTCA-ACGA-AACC
gi|106826 : --AAA-ATA-----TT-GCAATA-CATA---TCGCAGTAT---A---TTTG------AAAA-TATGG--C-A-A-T-ATA-TC-G-TG--ATACCAAA-------A-T--------TTCTC-CAGA-TACACAGCCCTA
gi|106827 : AAAA-TATTG--C-A-A-T-ATA-TC-G-TG--ATAC-GAA-------A-T--------TTTCACCCGA-TACACAGCCCTA
gi|106828 : A-TATTG--T-G-A-T-ATA-TC-G-CG--ATAC-AAA-------A-TTCTTCTAATCTTG-GCGA-TACCCATCCCTA
gi|106829 : -TATTG--T-G-A-T-GTA-TC-G-CG--ATAT-AAA-------A-T--------TTTTG-GCAA-TACCCATCCCTA