lowQualScore                  :                                                                          1                               
lowQualScore                  :        1  555    1  3 22 1    1 88888 3333 1  4 1 44  33 5555555    99 1 2 1  44    3   1  33  2     2   
lowQualScore                  :        .  ...    .  . .. .    . ..... .... .  . . ..  .. .......    .. . . .  ..    .   .  ..  .     .   
lowQualScore                  :        7  111    7  2 33 7    7 33333 5555 7  0 7 11  33 7777777    00 7 2 7  11    5   9  11  2     0   
consensus                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
Reference ( gi|116707 )       : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116709                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116710                     : TTTTTAG-AC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116712                     : TTTTTAG-CC-TTGGCT-TTGC--T-AAAA-G-----C----C-ATAGAG--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116708                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTGCA----T-ACAAAGTAA
gi|116713                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-GTGCT-CT------TGACA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116714                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116719                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C-------------------------AGCCA-TC-G-T-GA--ACGC-TTG-AT--TT-ACAAAGTAA
gi|116715                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TTGTA-TC-G-T-GA--TCGC-T---AT--TT-ACAAAATAA
gi|116720                     : TCTTTAG-CC-T-GGCT-TTGCGCT-AAAAAG-----C----C-ATAG-G--CT-CTCTCTTTGCTCA-TC-G-T-GA--TCGC-TTG-ATTCTT-ACAAAATA
gi|116724                     : TTTTTAG-CC-TTGGCT-TT-T--T-AA---G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GAATTCGC-TTG--T--TT-ACAAA-TAA
gi|116711                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACGG-----T-CT------AGGCA-CA-C-T-GA--TCGC-TTG-CA--TT-ACAAA-TAA
gi|116716                     : TTTTTAG-CC-T-GGCT-TTTC--T-AAAA-A-----C----C-CT-G-G--CTATT------AGGCA--C-GCT-GA--TCAC-TTG-
gi|116718                     : TTTTTAG-CC-G-GGCT-TTGC--TAAAAA-G-----C----C-CTAG-C--CT-AT------AGGCC-AC-GCT-GAT-TCGC-TTG-
gi|116717                     : TTTTTAG-CC-G-GGTT-TTGC--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCAC-
gi|116722                     : TTTTTAG-CC-G-GGCT-TTTT--T-AAAA-G-----C----C-CT---G--CT-AT------AGGCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116725                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-AT
gi|116723                     : TTTTTAG-CC-T-GACT-TTGT--T-AAAA-G-----C----C-CT---G--CT-AT------AATCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116721                     : TTTTTAG-TC-A-GGCT-TTGC--T-AAAA-G-----G----C-CTGG-G---T-AT------TGGCA--C-GCT-GA--TCGC-
gi|116726                     :  TTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116728                     :  TTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116729                     :  TTTAAG-CCCT-GGCG-TTGC--T-AAAA-G-----CAAAGCAATAG-GC-CT-GT------AGGCG-TCGG-TGGA--TCGCTTTG-AT--TTAACAAAGTAA
gi|116727                     :  TTTTAG-CC-G-GGCT-TTAT--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCGC-ATG-TA--TT-AC
gi|116731                     :    TTAGGCC-T-GGATATTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GG--TCGCTTTG-AT--TT-ACAAAGTAA
gi|116730                     :    TTAG-CC---GGCT-TTGC--T-AAAA-G-----C------ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTG-





Alignments
lowQualScore                  :                                                                          1                               
lowQualScore                  :        1  444    1  2 22 1    1 88888 3333 1  3 1 44  22 5555555    88 1 1 1  44    3   1  22  2     1   
lowQualScore                  :        .  ...    .  . .. .    . ..... .... .  . . ..  .. .......    .. . . .  ..    .   .  ..  .     .   
lowQualScore                  :        6  666    6  6 22 6    6 00000 4444 6  5 7 00  88 1111111    33 7 7 7  00    3   8  99  1     2   
consensus                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
Reference ( family-722 )      : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116707                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116708                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTGCA----T-ACAAAGTAA
gi|116709                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116710                     : TTTTTAG-AC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116711                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACGG-----T-CT------AGGCA-CA-C-T-GA--TCGC-TTG-CA--TT-ACAAA-TAA
gi|116712                     : TTTTTAG-CC-TTGGCT-TTGC--T-AAAA-G-----C----C-ATAGAG--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116713                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-GTGCT-CT------TGACA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116714                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116715                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TTGTA-TC-G-T-GA--TCGC-T---AT--TT-ACAAAATAA
gi|116716                     : TTTTTAG-CC-T-GGCT-TTTC--T-AAAA-A-----C----C-CT-G-G--CTATT------AGGCA--C-GCT-GA--TCAC-TTG-
gi|116717                     : TTTTTAG-CC-G-GGTT-TTGC--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCAC-
gi|116718                     : TTTTTAG-CC-G-GGCT-TTGC--TAAAAA-G-----C----C-CTAG-C--CT-AT------AGGCC-AC-GCT-GAT-TCGC-TTG-
gi|116719                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C-------------------------AGCCA-TC-G-T-GA--ACGC-TTG-AT--TT-ACAAAGTAA
gi|116720                     : TCTTTAG-CC-T-GGCT-TTGCGCT-AAAAAG-----C----C-ATAG-G--CT-CTCTCTTTGCTCA-TC-G-T-GA--TCGC-TTG-ATTCTT-ACAAAATA
gi|116721                     : TTTTTAG-TC-A-GGCT-TTGC--T-AAAA-G-----G----C-CTGG-G---T-AT------TGGCA--C-GCT-GA--TCGC-
gi|116722                     : TTTTTAG-CC-G-GGCT-TTTT--T-AAAA-G-----C----C-CT---G--CT-AT------AGGCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116723                     : TTTTTAG-CC-T-GACT-TTGT--T-AAAA-G-----C----C-CT---G--CT-AT------AATCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116724                     : TTTTTAG-CC-TTGGCT-TT-T--T-AA---G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GAATTCGC-TTG--T--TT-ACAAA-TAA
gi|116725                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-AT
gi|116726                     :  TTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116727                     :  TTTTAG-CC-G-GGCT-TTAT--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCGC-ATG-TA--TT-AC
gi|116728                     :  TTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116729                     :  TTTAAG-CCCT-GGCG-TTGC--T-AAAA-G-----CAAAGCAATAG-GC-CT-GT------AGGCG-TCGG-TGGA--TCGCTTTG-AT--TTAACAAAGTAA
gi|116730                     :    TTAG-CC---GGCT-TTGC--T-AAAA-G-----C------ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTG-
gi|116731                     :    TTAGGCC-T-GGATATTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GG--TCGCTTTG-AT--TT-ACAAAGTAAcataca





Alignments
lowQualScore                  :                                                                          1                               
lowQualScore                  :        1  444    1  2 22 1    1 88888 3333 1  3 1 44  22 5555555    88 1 1 1  44    3   1  22  2     1   
lowQualScore                  :        .  ...    .  . .. .    . ..... .... .  . . ..  .. .......    .. . . .  ..    .   .  ..  .     .   
lowQualScore                  :        6  666    6  6 22 6    6 00000 4444 6  5 7 00  88 1111111    33 7 7 7  00    3   8  99  1     2   
consensus                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
Reference ( family-722 )      : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116707                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116708                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTGCA----T-ACAAAGTAA
gi|116709                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116710                     : TTTTTAG-AC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116711                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACGG-----T-CT------AGGCA-CA-C-T-GA--TCGC-TTG-CA--TT-ACAAA-TAA
gi|116712                     : TTTTTAG-CC-TTGGCT-TTGC--T-AAAA-G-----C----C-ATAGAG--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116713                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-GTGCT-CT------TGACA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116714                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116715                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TTGTA-TC-G-T-GA--TCGC-T---AT--TT-ACAAAATAA
gi|116716                     : TTTTTAG-CC-T-GGCT-TTTC--T-AAAA-A-----C----C-CT-G-G--CTATT------AGGCA--C-GCT-GA--TCAC-TTG-
gi|116717                     : TTTTTAG-CC-G-GGTT-TTGC--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCAC-
gi|116718                     : TTTTTAG-CC-G-GGCT-TTGC--TAAAAA-G-----C----C-CTAG-C--CT-AT------AGGCC-AC-GCT-GAT-TCGC-TTG-
gi|116719                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C-------------------------AGCCA-TC-G-T-GA--ACGC-TTG-AT--TT-ACAAAGTAA
gi|116720                     : TCTTTAG-CC-T-GGCT-TTGCGCT-AAAAAG-----C----C-ATAG-G--CT-CTCTCTTTGCTCA-TC-G-T-GA--TCGC-TTG-ATTCTT-ACAAAATA
gi|116721                     : TTTTTAG-TC-A-GGCT-TTGC--T-AAAA-G-----G----C-CTGG-G---T-AT------TGGCA--C-GCT-GA--TCGC-
gi|116722                     : TTTTTAG-CC-G-GGCT-TTTT--T-AAAA-G-----C----C-CT---G--CT-AT------AGGCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116723                     : TTTTTAG-CC-T-GACT-TTGT--T-AAAA-G-----C----C-CT---G--CT-AT------AATCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116724                     : TTTTTAG-CC-TTGGCT-TT-T--T-AA---G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GAATTCGC-TTG--T--TT-ACAAA-TAA
gi|116725                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-AT
gi|116726                     :  TTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116727                     :  TTTTAG-CC-G-GGCT-TTAT--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCGC-ATG-TA--TT-AC
gi|116728                     :  TTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116729                     :  TTTAAG-CCCT-GGCG-TTGC--T-AAAA-G-----CAAAGCAATAG-GC-CT-GT------AGGCG-TCGG-TGGA--TCGCTTTG-AT--TTAACAAAGTAA
gi|116730                     :    TTAG-CC---GGCT-TTGC--T-AAAA-G-----C------ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTG-
gi|116731                     :    TTAGGCC-T-GGATATTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GG--TCGCTTTG-AT--TT-ACAAAGTAAcataca


blockSeqs                     :        G  TT     A  G GC A    A CAAAG AAAG A  A A TG  AT CTCTTTG    GT G C G  AT    T   C  TC  A     G
blockSeqs                     :        .  TT     .  G .  .    . CAAAG .    .  A . C   C  A          GT . C .  T     T   .  .   .     G
blockSeqs                     :        .  CT     .  G .  .    . .     .    .  A . .   G  A          T  . C .  .     .   .  .   .     A
blockSeqs                     :        .  G      .  G .  .    . .     .    .  G . .   C  T          T  . C .  .     .   .  .   .     A
blockSeqs                     :        .  T      .  G .  .    . .     .    .  A . .   C  A          C  . C .  .     .   .  .   .     A
blockSeqs                     :        .  T      .  T .  .    . .     .    .  A . .   C  T          T  . C .  .     .   .  .   .     G
blockSeqs                     :        .  G      .  G .  .    . .     .    .  A . .   C  T          T  . C .  .     .   .  .   .     A
blockSeqs                     :        .  T      .  G .  .    . .     .    .  A . .   C  T          T  . . .  .     .   .  .   .     G
blockSeqs                     :        .  T      .  G .  .    . .     .    .  A . .   C  T          T  . . .  .     .   .  .   .     G
blockSeqs                     :        .  T      .  G .  .    . .     .    .  A . .   A  A          A  . . .  .     .   .  .   .     G
blockSeqs                     :        .  T      .  G .  .    . .     .    .  G . .   A  A          T  . . .  .     .   .  .   .     A
blockSeqs                     :        .  G      .  T .  .    . .     .    .  A . .   C  A          T  . . .  .     .   .  .   .     G
blockSeqs                     :        .  G      .  G .  .    . .     .    .  A . .   A  A          T  . . .  .     .   .  .   .     G
blockSeqs                     :        .  T      .  G .  .    . .     .    .  A . .   A  T          T  . . .  .     .   .  .   .     .
blockSeqs                     :        .  T      .  G .  .    . .     .    .  A . .   A  A          T  . . .  .     .   .  .   .     .
blockSeqs                     :        .  A      .  A .  .    . .     .    .  A . .   C  A          T  . . .  .     .   .  .   .      
blockSeqs                     :        .  G      .  G .  .    . .     .    .  A . .   C  T          T  . . .  .     .   .  .   .      
blockSeqs                     :        .  T      .  G .  .    . .     .    .  . . .   A  A          .  . . .  .     .   .  .   .      
blockSeqs                     :        .  T      .  G .  .    . .     .    .  . . .   C  A          .  . . .  .     .   .             
blockSeqs                     :        .  T      .  . .  .    . .     .    .  . . .   G  T          .  . . .  .     .   .             
blockSeqs                     :        .  G      .  . .  .    . .     .    .  . . .   C  A          .  . . .  .     .   .             
blockSeqs                     :        .  T      .  . .  .    . .     .    .  . . .   G  A          .  . . .  .     .                 
blockSeqs                     :        .  T      .  . .  .    . .     .    .  . . .   .  A          .  . . .  .     .                 
blockSeqs                     :        .  .      .  . .  .    . .     .    .                                                          


blockSeqCons                  : 
originalCons                  : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
finalCons                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA





Alignments
lowQualScore                  :                                                                          1                               
lowQualScore                  :        1  444    1  2 22 1    1 88888 3333 1  3 1 44  22 5555555    88 1 1 1  44    3   1  22  2     1   
lowQualScore                  :        .  ...    .  . .. .    . ..... .... .  . . ..  .. .......    .. . . .  ..    .   .  ..  .     .   
lowQualScore                  :        6  666    6  6 22 6    6 00000 4444 6  5 7 00  88 1111111    33 7 7 7  00    3   8  99  1     2   
consensus                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
Reference ( family-722 )      : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116707                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116708                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTGCA----T-ACAAAGTAA
gi|116709                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116710                     : TTTTTAG-AC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116711                     : TTGTTAG-CC-G-GGCT-TTGC--T-AAAA-G-----C----C-ACGG-----T-CT------AGGCA-CA-C-T-GA--TCGC-TTG-CA--TT-ACAAA-TAA
gi|116712                     : TTTTTAG-CC-TTGGCT-TTGC--T-AAAA-G-----C----C-ATAGAG--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116713                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-GTGCT-CT------TGACA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116714                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAA
gi|116715                     : TTTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TTGTA-TC-G-T-GA--TCGC-T---AT--TT-ACAAAATAA
gi|116716                     : TTTTTAG-CC-T-GGCT-TTTC--T-AAAA-A-----C----C-CT-G-G--CTATT------AGGCA--C-GCT-GA--TCAC-TTG-
gi|116717                     : TTTTTAG-CC-G-GGTT-TTGC--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCAC-
gi|116718                     : TTTTTAG-CC-G-GGCT-TTGC--TAAAAA-G-----C----C-CTAG-C--CT-AT------AGGCC-AC-GCT-GAT-TCGC-TTG-
gi|116719                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C-------------------------AGCCA-TC-G-T-GA--ACGC-TTG-AT--TT-ACAAAGTAA
gi|116720                     : TCTTTAG-CC-T-GGCT-TTGCGCT-AAAAAG-----C----C-ATAG-G--CT-CTCTCTTTGCTCA-TC-G-T-GA--TCGC-TTG-ATTCTT-ACAAAATA
gi|116721                     : TTTTTAG-TC-A-GGCT-TTGC--T-AAAA-G-----G----C-CTGG-G---T-AT------TGGCA--C-GCT-GA--TCGC-
gi|116722                     : TTTTTAG-CC-G-GGCT-TTTT--T-AAAA-G-----C----C-CT---G--CT-AT------AGGCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116723                     : TTTTTAG-CC-T-GACT-TTGT--T-AAAA-G-----C----C-CT---G--CT-AT------AATCAGTC---T-GA--TCGC-TCA-AC--GG-A-AAAGTAA
gi|116724                     : TTTTTAG-CC-TTGGCT-TT-T--T-AA---G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GAATTCGC-TTG--T--TT-ACAAA-TAA
gi|116725                     : TTTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-AT
gi|116726                     :  TTTTAG-CC-T-GGCT-TTGC--T-AAAA-G-----C----C-ATAG-G--CT-CT------AGGCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAGTAA
gi|116727                     :  TTTTAG-CC-G-GGCT-TTAT--T-AAAA-G-----C----C-CT-G-G--CT-AT------AGGCA--C-GCT-GA--TCGC-ATG-TA--TT-AC
gi|116728                     :  TTTTAG-CC-T-GGCT-TT---------A-G-----C----C-ATAG-G--CT-CT------TGTCA-TC-G-T-GA--TCGC-TTG-AT--TT-ACAAAATAA
gi|116729                     :  TTTAAG-CCCT-GGCG-TTGC--T-AAAA-G-----CAAAGCAATAG-GC-CT-GT------AGGCG-TCGG-TGGA--TCGCTTTG-AT--TTAACAAAGTAA
gi|116730                     :    TTAG-CC---GGCT-TTGC--T-AAAA-G-----C------ACAG-G--CT-CT------AGGCA--C-GCT-GA--TCGC-TTG-
gi|116731                     :    TTAGGCC-T-GGATATTGC--T-AAAA-GCAAAGC----C-ATAG-G--CT-GT------AGGCG-TC-G-T-GG--TCGCTTTG-AT--TT-ACAAAGTAAcataca