lowQualScore : 1 11
lowQualScore : 1 0 2 1 66666666 1 3 1 00 1 1 5 44 1 3 1 1 1 22
lowQualScore : . . . . ........ . . . .. . . . .. . . . . . ..
lowQualScore : 1 2 0 9 33333333 7 3 7 33 7 7 0 00 7 3 7 7 7 33
consensus : CTTATTTTCC-A-A--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
Reference ( gi|122238 ) : CTTACTTTTC-A-A--------TTGG-GAA-G-GA-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122239 : CTTATTTTCC-A-A--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--TC-CA-AA-T-CAGAGAG-AGT--GACAGTCC
gi|122240 : CTTATTTTCC-A-A--------TTGG-GAA-G-GG-T-CCTTTG-A-TTGGA--CC-CA-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122241 : CTTATTTTCC-A-A--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-ATTGAGATAGCCC
gi|122243 : CTTAATTTCC-A-A--------TTGGCGAA-G-GG-T-CCTTTT-A-TCGGAAACC-CA-AA-T-CAGGGAG-AGT--GACAGCC
gi|122244 : CTTATCTTTC-G-C--------TTGG-GAA-G-GG-T-CCTTTC-A-TCGGA--CC-CA-AA-C-TAGGGAG-AGT--GACAGCCC
gi|122247 : CTTA-TTATC-A-A--------TTGG-AAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGGG-ATT--GACAGCC
gi|122249 : CTTATTTTCCCA-A--------TTGG-GAA-G-GA-T-CATTTT-A-TGGGA--CC-TA-AA-T-TAGGGCG-AGT--GACAGCCC
gi|122245 : CTTATTTTCC-A-A--------TTGG-CAA-G-GG-T-CCATTT-A-TGGGA--CC-CG-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122246 : CTTATTTTCC-A-AAAAAAAAATTGG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-CAGGACG-AGT--GACAGCC
gi|122242 : CCTATTTTCC-T-A--------ATGG-GAA-G-G--T-CTTTTT-A-TCGGA--CC--A-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122248 : CTTATGTTCC-A-A--------TTGA-GAA-G-GG-T-CCTTTT-A-TCAGA--TC-CC-AA-T-TAGGGAG-AGT--GAGAGCCC
gi|122250 : CTTA-TTTTC-A----------TTGG-GAA-G-GG-T-CCTTTT-A-ATGGA--CC-CA-AA-T-CAGGGAGAAGT--G-CAGCCC
gi|122251 : CTTAATTCCC-A-A--------TTGG-GAA-G-GGCT-CCTTTT-ATTCGGA--CC-CCTAA-TGCAGGGAG-AGT--GACGTCCC
gi|122253 : TTATTTTTC-A-G--------TTAG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122254 : TATTTTCC-T-A--------ATGG-GAA-G-GG-T-CTTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122255 : TATTTTTC-A-G--------TTAG-GAG-G-G--T-CCTTTT-A-TTGGA--CCACA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122257 : ATTTTTG-G-A--------TTAG-GAATG-GG-G-CCGAAT-A-TCGGA--CC-CA-AA-T-CAGGTAG-ATT--GACGGCCC
gi|122258 : TTTTC-GCA--------TTGG-GAATG-GG-G-CCGAAT-A-TTGGA--CC-CA-AA-T-CAGGTAG-AGT--GACAGCCC
gi|122259 : C-A-A--------TTGG-GAA-G-GT-TTCCTTTT-AATCAGA--CC-CA-AA-T-CAGGGAG-A-T--GACAGCCC
gi|122256 : tcc-A-A--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGG---CC-C--AA-T-CAGGTAG-AGT--GACAGCCC
gi|122260 : attttaa-A--------TTGG-GAG-G-AG-T-CATTTC-A-TCGGA--CC-CA-GA-T-CAGGAGG-AGT--GACAACCC
gi|122252 : --------TTGG-GAA-ACGG-T-CCTTTTTA-TCGGAA-CC-CA-AAAT-CAGGGAG-GGT--GACACCC
gi|122261 : cttatt--------TTGG-GAA-G-GG-T-CCTTTT-ATTCGGA--CC-TAGAA-T-CAGCGAG-AGT--
gi|122262 : A-G-GG-T-CCTTTT-A-TCAGA--CT-CA-AA-T-TAGGGGG-AGT--GACAGCCC
Alignments
lowQualScore : 1 66666666 1 3 1 1 1 1 4 33 1 3 1 1 1 22
lowQualScore : . ........ . . . . . . . .. . . . . . ..
lowQualScore : 8 00000000 7 2 6 6 6 6 8 88 6 2 6 6 6 22
consensus : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
Reference ( family-721 ) : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122238 : CTTACTTTTC-AA--------TTGG-GAA-G-GA-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122239 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--TC-CA-AA-T-CAGAGAG-AGT--GACAGTCC
gi|122240 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTG-A-TTGGA--CC-CA-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122241 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-ATTGAGATAGCCC
gi|122242 : CCTATTTTCC-TA--------ATGG-GAA-G-G--T-CTTTTT-A-TCGGA--CC--A-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122243 : CTTAATTTCC-AA--------TTGGCGAA-G-GG-T-CCTTTT-A-TCGGAAACC-CA-AA-T-CAGGGAG-AGT--GACAGCC
gi|122244 : CTTATCTTTC-GC--------TTGG-GAA-G-GG-T-CCTTTC-A-TCGGA--CC-CA-AA-C-TAGGGAG-AGT--GACAGCCC
gi|122245 : CTTATTTTCC-AA--------TTGG-CAA-G-GG-T-CCATTT-A-TGGGA--CC-CG-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122246 : CTTATTTTCC-AAAAAAAAAATTGG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-CAGGACG-AGT--GACAGCC
gi|122247 : CTTATTATC--AA--------TTGG-AAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGGG-ATT--GACAGCC
gi|122248 : CTTATGTTCC-AA--------TTGA-GAA-G-GG-T-CCTTTT-A-TCAGA--TC-CC-AA-T-TAGGGAG-AGT--GAGAGCCC
gi|122249 : CTTATTTTCCCAA--------TTGG-GAA-G-GA-T-CATTTT-A-TGGGA--CC-TA-AA-T-TAGGGCG-AGT--GACAGCCC
gi|122250 : CTTATTTTC---A--------TTGG-GAA-G-GG-T-CCTTTT-A-ATGGA--CC-CA-AA-T-CAGGGAGAAGT--G-CAGCCC
gi|122251 : CTTAATTCCC-AA--------TTGG-GAA-G-GGCT-CCTTTT-ATTCGGA--CC-CCTAA-TGCAGGGAG-AGT--GACGTCCC
gi|122252 : CTTATTTT---------------GG-GAA-ACGG-T-CCTTTTTA-TCGGAA-CC-CA-AAAT-CAGGGAG-GGT--GACACCC
gi|122253 : TTATTTTTC-AG--------TTAG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122254 : TATTTTCC-TA--------ATGG-GAA-G-GG-T-CTTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122255 : TATTTTTC-AG--------TTAG-GA--G-GG-T-CCTTTT-A-TTGGA--CCACA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122256 : ATTTTAA-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGG---CC-C--AA-T-CAGGTAG-AGT--GACAGCCC
gi|122257 : ATTTTTG-GA--------TTAG-GAATG-GG-G-CCGAAT-A-TCGGA--CC-CA-AA-T-CAGGTAG-ATT--GACGGCCC
gi|122258 : TTTTCG-CA--------TTGG-GAATG-GG-G-CCGAAT-A-TTGGA--CC-CA-AA-T-CAGGTAG-AGT--GACAGCCC
gi|122259 : TCCC-AA--------TTGG-GAA-G-GT-TTCCTTTT-AATCAGA--CC-CA-AA-T-CAGGGAG-A-T--GACAGCCC
gi|122260 : A--------TTGG-GAG-G-AG-T-CATTTC-A-TCGGA--CC-CA-GA-T-CAGGAGG-AGT--GACAACCC
gi|122261 : --------TTGG-GAA-G-GG-T-CCTTTT-ATTCGGA--CC-TAGAA-T-CAGCGAG-AGT--
gi|122262 : A-G-GG-T-CCTTTT-A-TCAGA--CT-CA-AA-T-TAGGGGG-AGT--GACAGCCC
Alignments
lowQualScore : 1 66666666 1 3 1 1 1 1 4 33 1 3 1 1 1 22
lowQualScore : . ........ . . . . . . . .. . . . . . ..
lowQualScore : 8 00000000 7 2 6 6 6 6 8 88 6 2 6 6 6 22
consensus : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
Reference ( family-721 ) : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122238 : CTTACTTTTC-AA--------TTGG-GAA-G-GA-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122239 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--TC-CA-AA-T-CAGAGAG-AGT--GACAGTCC
gi|122240 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTG-A-TTGGA--CC-CA-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122241 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-ATTGAGATAGCCC
gi|122242 : CCTATTTTCC-TA--------ATGG-GAA-G-G--T-CTTTTT-A-TCGGA--CC--A-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122243 : CTTAATTTCC-AA--------TTGGCGAA-G-GG-T-CCTTTT-A-TCGGAAACC-CA-AA-T-CAGGGAG-AGT--GACAGCC
gi|122244 : CTTATCTTTC-GC--------TTGG-GAA-G-GG-T-CCTTTC-A-TCGGA--CC-CA-AA-C-TAGGGAG-AGT--GACAGCCC
gi|122245 : CTTATTTTCC-AA--------TTGG-CAA-G-GG-T-CCATTT-A-TGGGA--CC-CG-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122246 : CTTATTTTCC-AAAAAAAAAATTGG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-CAGGACG-AGT--GACAGCC
gi|122247 : CTTATTATC--AA--------TTGG-AAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGGG-ATT--GACAGCC
gi|122248 : CTTATGTTCC-AA--------TTGA-GAA-G-GG-T-CCTTTT-A-TCAGA--TC-CC-AA-T-TAGGGAG-AGT--GAGAGCCC
gi|122249 : CTTATTTTCCCAA--------TTGG-GAA-G-GA-T-CATTTT-A-TGGGA--CC-TA-AA-T-TAGGGCG-AGT--GACAGCCC
gi|122250 : CTTATTTTC---A--------TTGG-GAA-G-GG-T-CCTTTT-A-ATGGA--CC-CA-AA-T-CAGGGAGAAGT--G-CAGCCC
gi|122251 : CTTAATTCCC-AA--------TTGG-GAA-G-GGCT-CCTTTT-ATTCGGA--CC-CCTAA-TGCAGGGAG-AGT--GACGTCCC
gi|122252 : CTTATTTT---------------GG-GAA-ACGG-T-CCTTTTTA-TCGGAA-CC-CA-AAAT-CAGGGAG-GGT--GACACCC
gi|122253 : TTATTTTTC-AG--------TTAG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122254 : TATTTTCC-TA--------ATGG-GAA-G-GG-T-CTTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122255 : TATTTTTC-AG--------TTAG-GA--G-GG-T-CCTTTT-A-TTGGA--CCACA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122256 : ATTTTAA-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGG---CC-C--AA-T-CAGGTAG-AGT--GACAGCCC
gi|122257 : ATTTTTG-GA--------TTAG-GAATG-GG-G-CCGAAT-A-TCGGA--CC-CA-AA-T-CAGGTAG-ATT--GACGGCCC
gi|122258 : TTTTCG-CA--------TTGG-GAATG-GG-G-CCGAAT-A-TTGGA--CC-CA-AA-T-CAGGTAG-AGT--GACAGCCC
gi|122259 : TCCC-AA--------TTGG-GAA-G-GT-TTCCTTTT-AATCAGA--CC-CA-AA-T-CAGGGAG-A-T--GACAGCCC
gi|122260 : A--------TTGG-GAG-G-AG-T-CATTTC-A-TCGGA--CC-CA-GA-T-CAGGAGG-AGT--GACAACCC
gi|122261 : --------TTGG-GAA-G-GG-T-CCTTTT-ATTCGGA--CC-TAGAA-T-CAGCGAG-AGT--
gi|122262 : A-G-GG-T-CCTTTT-A-TCAGA--CT-CA-AA-T-TAGGGGG-AGT--GACAGCCC
blockSeqs : C AAAAAAAA C T C C T T T AA A T A G A GA
blockSeqs : . . . T . . . . A A . G . . . .
blockSeqs : . . . . . . . . T . . . . . . .
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blockSeqCons :
originalCons : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
finalCons : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
Alignments
lowQualScore : 1 66666666 1 3 1 1 1 1 4 33 1 3 1 1 1 22
lowQualScore : . ........ . . . . . . . .. . . . . . ..
lowQualScore : 8 00000000 7 2 6 6 6 6 8 88 6 2 6 6 6 22
consensus : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
Reference ( family-721 ) : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122238 : CTTACTTTTC-AA--------TTGG-GAA-G-GA-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122239 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--TC-CA-AA-T-CAGAGAG-AGT--GACAGTCC
gi|122240 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTG-A-TTGGA--CC-CA-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122241 : CTTATTTTCC-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-ATTGAGATAGCCC
gi|122242 : CCTATTTTCC-TA--------ATGG-GAA-G-G--T-CTTTTT-A-TCGGA--CC--A-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122243 : CTTAATTTCC-AA--------TTGGCGAA-G-GG-T-CCTTTT-A-TCGGAAACC-CA-AA-T-CAGGGAG-AGT--GACAGCC
gi|122244 : CTTATCTTTC-GC--------TTGG-GAA-G-GG-T-CCTTTC-A-TCGGA--CC-CA-AA-C-TAGGGAG-AGT--GACAGCCC
gi|122245 : CTTATTTTCC-AA--------TTGG-CAA-G-GG-T-CCATTT-A-TGGGA--CC-CG-AA-T-CAGGGAG-ATT--GACAGCCC
gi|122246 : CTTATTTTCC-AAAAAAAAAATTGG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-CAGGACG-AGT--GACAGCC
gi|122247 : CTTATTATC--AA--------TTGG-AAA-G-GG-T-CCTTTT-A-TCGGA--CC-CA-AA-T-CAGGGGG-ATT--GACAGCC
gi|122248 : CTTATGTTCC-AA--------TTGA-GAA-G-GG-T-CCTTTT-A-TCAGA--TC-CC-AA-T-TAGGGAG-AGT--GAGAGCCC
gi|122249 : CTTATTTTCCCAA--------TTGG-GAA-G-GA-T-CATTTT-A-TGGGA--CC-TA-AA-T-TAGGGCG-AGT--GACAGCCC
gi|122250 : CTTATTTTC---A--------TTGG-GAA-G-GG-T-CCTTTT-A-ATGGA--CC-CA-AA-T-CAGGGAGAAGT--G-CAGCCC
gi|122251 : CTTAATTCCC-AA--------TTGG-GAA-G-GGCT-CCTTTT-ATTCGGA--CC-CCTAA-TGCAGGGAG-AGT--GACGTCCC
gi|122252 : CTTATTTT---------------GG-GAA-ACGG-T-CCTTTTTA-TCGGAA-CC-CA-AAAT-CAGGGAG-GGT--GACACCC
gi|122253 : TTATTTTTC-AG--------TTAG-GAA-G-GG-T-CCTTTT-A-TTGGA--CC-CA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122254 : TATTTTCC-TA--------ATGG-GAA-G-GG-T-CTTTTT-A-TCGGA--CC-CA-AA-T-CAGGGAG-AGT--GACAGCCC
gi|122255 : TATTTTTC-AG--------TTAG-GA--G-GG-T-CCTTTT-A-TTGGA--CCACA-AA-T-TCGGGGG-ATT--GACAGCCC
gi|122256 : ATTTTAA-AA--------TTGG-GAA-G-GG-T-CCTTTT-A-TCGG---CC-C--AA-T-CAGGTAG-AGT--GACAGCCC
gi|122257 : ATTTTTG-GA--------TTAG-GAATG-GG-G-CCGAAT-A-TCGGA--CC-CA-AA-T-CAGGTAG-ATT--GACGGCCC
gi|122258 : TTTTCG-CA--------TTGG-GAATG-GG-G-CCGAAT-A-TTGGA--CC-CA-AA-T-CAGGTAG-AGT--GACAGCCC
gi|122259 : TCCC-AA--------TTGG-GAA-G-GT-TTCCTTTT-AATCAGA--CC-CA-AA-T-CAGGGAG-A-T--GACAGCCC
gi|122260 : A--------TTGG-GAG-G-AG-T-CATTTC-A-TCGGA--CC-CA-GA-T-CAGGAGG-AGT--GACAACCC
gi|122261 : --------TTGG-GAA-G-GG-T-CCTTTT-ATTCGGA--CC-TAGAA-T-CAGCGAG-AGT--
gi|122262 : A-G-GG-T-CCTTTT-A-TCAGA--CT-CA-AA-T-TAGGGGG-AGT--GACAGCCC