lowQualScore : 1111111
lowQualScore : 8 1 222 666 11 1 22 1 0000000 5 1 1 1 222 1
lowQualScore : . . ... ... .. . .. . ....... . . . . ... .
lowQualScore : 1 7 999 222 88 7 33 7 0000000 0 7 7 7 999 7
consensus : TATATTAANAA-C---CCTT-C-ATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
Reference ( gi|131932 ) : TATATTAATAA-C---CCTT-T-ATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131933 : TATATTAATAA-C---CCTT-T-ATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131935 : TATATTAATAA-C---CCTT-T-ATC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TAAG-TCATTTGTC
gi|131934 : TATATTAATAA-C---CCTT-T-ATC-TT-AA--CTGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTC
gi|131937 : TACATTAATAA-C---CCTT-T-ATC-TC-TA--CAGTTA-T--G----GTTCAAT-TG-TG---TAAG-TCATTCGTCacc
gi|131938 : TATATTATTAA-C---CCTT-T-ATC-TC-AA--CAGTCA-TAGG----GTTC-AT-TGATG---AGAG-TCATTCGT
gi|131936 : TATATTAAAAA-C---TCTT-C-ATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATTCATC
gi|131944 : TGTATTAAAAAAC---CCTT-C-ATT-TC-AA--CAGTCATT--G----GTTC-AT-TG-TGTACTAAG-TCATTTGTC
gi|131939 : TATATTAATGA-C---CCTT-A-TTC-TCAAA--CAGTCA-T--G----GTTG-ATATG-TG---TAAGTTCATTCATC
gi|131946 : TATATTAAAAA-C---CCTT-T-ATT-TC-AA--CAG--------------TC-AT-TG-TG---CAAG-TCATTTGTC
gi|131945 : TATATTAATAA-C---CCTT-T-ATCTTC-AAACCAGTCA-T--G----GTTC-AT----TA---TAAA-TC-TTC
gi|131940 : TATATTAAAAA-C---CCTT-C-ATT-TC-AA--CATTTA-T--G----TATC-GT-TG-CG---TAAA-TCATTTGTCa
gi|131951 : TATCTTAATAA-C---CCTT-A-TTC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TA
gi|131941 : TATATTAAAAA-C---CCTT-G-ATT-TC-AA--CACTTA-T--T----GATC-GT-TG-CG---CAAG-TCATTTGTC
gi|131942 : TATTTTAAAAA-A---CCCT-C-ATT-TC-AA--CAATCA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC
gi|131943 : TATATTAAAAA-CGTACCTT-TCATT-TC-AA--CAGCCA-T--T----GATC-AT-TG-TG---CAAT-TCATTTGTC
gi|131947 : TATATCAAAAA-T---CCTT--------C-AA--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATT
gi|131948 : TATAT-AA-AA-C---CCCT-C-ATT-TC-AA--CACTTA-T--ATATTGATC-AT-TG-TG---TAGG-TCATTCATC
gi|131949 : TATATTAAAAT-C---CCTA-C-ATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-ACACTC
gi|131950 : TATATTAAAAA-C---C-------------AA--CAATCA-T--T----GATC-AT-TG-TG---TAAG-TCAGTCATCa
gi|131952 : ACACTGATAG-C---CCTT-T-ATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-ACATTCGT
gi|131953 : ATTTTAAAAA-C---TCTT-C-ATT-TC-AA--CAGTTA-T--T----GATC-GT-TG-TA---TAAT-TCATTCATC
gi|131954 : ATAAATAA-C---CCTT-T-ATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131955 : ATTAA-AA-T---CCTTAC-ATT-TC-AC--CAATTA-T--T----GATC-AT-TG-CG---TAAG-TCATTCATC
gi|131956 : AAAAA-C---CTTT-C-ATT-TC-AG--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC
Alignments
lowQualScore : 2 1 3333 22 1 1 22 1 7777777 1 1 1 1 222 1
lowQualScore : . . .... .. . . .. . ....... . . . . ... .
lowQualScore : 6 6 4444 00 6 6 22 6 2222222 6 6 6 6 888 7
consensus : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
Reference ( family-718 ) : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131932 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131933 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131934 : TATATTAATAA-C----CCTT-TATC-TT-AA--CTGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTC
gi|131935 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TAAG-TCATTTGTCacc
gi|131936 : TATATTAAAAA-C----TCTT-CATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATTCATC
gi|131937 : TACATTAATAA-C----CCTT-TATC-TC-TA--CAGTTA-T--G----GTTCAAT-TG-TG---TAAG-TCATTCGTC
gi|131938 : TATATTATTAA-C----CCTT-TATC-TC-AA--CAGTCA-TAGG----GTTC-AT-TGATG---AGAG-TCATTCGT
gi|131939 : TATATTAATGA-C----CCTT-ATTC-TCAAA--CAGTCA-T--G----GTTG-ATATG-TG---TAAGTTCATTCATC
gi|131940 : TATATTAAAAA-C----CCTT-CATT-TC-AA--CATTTA-T--G----TATC-GT-TG-CG---TAAA-TCATTTGTC
gi|131941 : TATATTAAAAA-C----CCTT-GATT-TC-AA--CACTTA-T--T----GATC-GT-TG-CG---CAAG-TCATTTGTC
gi|131942 : TATTTTAAAAA-A----CCCT-CATT-TC-AA--CAATCA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC
gi|131943 : TATATTAAAAA-CGTACCTTT-CATT-TC-AA--CAGCCA-T--T----GATC-AT-TG-TG---CAAT-TCATTTGTC
gi|131944 : TGTATTAAAAAAC----CCTT-CATT-TC-AA--CAGTCATT--G----GTTC-AT-TG-TGTACTAAG-TCATTTGTC
gi|131945 : TATATTAATAA-C----CCTT-TATCTTC-AAACCAGTCA-T--G----GTTC-AT----TA---TAAA-TC-TTC
gi|131946 : TATATTAAAAA-C----CCTT-TATT-TC-AA--CAG--------------TC-AT-TG-TG---CAAG-TCATTTGTCa
gi|131947 : TATATCAAAAA-T----CCTT-CA-------A--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATT
gi|131948 : TATAT--AAAA-C----CCCT-CATT-TC-AA--CACTTA-T--ATATTGATC-AT-TG-TG---TAGG-TCATTCATC
gi|131949 : TATATTAAAAT-C----CCTA-CATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-ACACTC
gi|131950 : TATATTAAAAA-C----C------------AA--CAATCA-T--T----GATC-AT-TG-TG---TAAG-TCAGTCATCa
gi|131951 : TATCTTAATAA-C----CCTT-ATTC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TA
gi|131952 : ACACTGATAG-C----CCTT-TATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-ACATTCGT
gi|131953 : ATTTTAAAAA-C----TCTT-CATT-TC-AA--CAGTTA-T--T----GATC-GT-TG-TA---TAAT-TCATTCATC
gi|131954 : ATAAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131955 : ATTAA-AA-T----CCTTACATT-TC-AC--CAATTA-T--T----GATC-AT-TG-CG---TAAG-TCATTCATC
gi|131956 : AAAAA-C----CTTT-CATT-TC-AG--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC
Alignments
lowQualScore : 2 1 3333 22 1 1 22 1 7777777 1 1 1 1 222 1
lowQualScore : . . .... .. . . .. . ....... . . . . ... .
lowQualScore : 6 6 4444 00 6 6 22 6 2222222 6 6 6 6 888 7
consensus : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
Reference ( family-718 ) : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131932 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131933 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131934 : TATATTAATAA-C----CCTT-TATC-TT-AA--CTGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTC
gi|131935 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TAAG-TCATTTGTCacc
gi|131936 : TATATTAAAAA-C----TCTT-CATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATTCATC
gi|131937 : TACATTAATAA-C----CCTT-TATC-TC-TA--CAGTTA-T--G----GTTCAAT-TG-TG---TAAG-TCATTCGTC
gi|131938 : TATATTATTAA-C----CCTT-TATC-TC-AA--CAGTCA-TAGG----GTTC-AT-TGATG---AGAG-TCATTCGT
gi|131939 : TATATTAATGA-C----CCTT-ATTC-TCAAA--CAGTCA-T--G----GTTG-ATATG-TG---TAAGTTCATTCATC
gi|131940 : TATATTAAAAA-C----CCTT-CATT-TC-AA--CATTTA-T--G----TATC-GT-TG-CG---TAAA-TCATTTGTC
gi|131941 : TATATTAAAAA-C----CCTT-GATT-TC-AA--CACTTA-T--T----GATC-GT-TG-CG---CAAG-TCATTTGTC
gi|131942 : TATTTTAAAAA-A----CCCT-CATT-TC-AA--CAATCA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC
gi|131943 : TATATTAAAAA-CGTACCTTT-CATT-TC-AA--CAGCCA-T--T----GATC-AT-TG-TG---CAAT-TCATTTGTC
gi|131944 : TGTATTAAAAAAC----CCTT-CATT-TC-AA--CAGTCATT--G----GTTC-AT-TG-TGTACTAAG-TCATTTGTC
gi|131945 : TATATTAATAA-C----CCTT-TATCTTC-AAACCAGTCA-T--G----GTTC-AT----TA---TAAA-TC-TTC
gi|131946 : TATATTAAAAA-C----CCTT-TATT-TC-AA--CAG--------------TC-AT-TG-TG---CAAG-TCATTTGTCa
gi|131947 : TATATCAAAAA-T----CCTT-CA-------A--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATT
gi|131948 : TATAT--AAAA-C----CCCT-CATT-TC-AA--CACTTA-T--ATATTGATC-AT-TG-TG---TAGG-TCATTCATC
gi|131949 : TATATTAAAAT-C----CCTA-CATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-ACACTC
gi|131950 : TATATTAAAAA-C----C------------AA--CAATCA-T--T----GATC-AT-TG-TG---TAAG-TCAGTCATCa
gi|131951 : TATCTTAATAA-C----CCTT-ATTC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TA
gi|131952 : ACACTGATAG-C----CCTT-TATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-ACATTCGT
gi|131953 : ATTTTAAAAA-C----TCTT-CATT-TC-AA--CAGTTA-T--T----GATC-GT-TG-TA---TAAT-TCATTCATC
gi|131954 : ATAAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131955 : ATTAA-AA-T----CCTTACATT-TC-AC--CAATTA-T--T----GATC-AT-TG-CG---TAAG-TCATTCATC
gi|131956 : AAAAA-C----CTTT-CATT-TC-AG--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC
blockSeqs : T A GTAC AC T A AC T ATATT T A A A TAC T
blockSeqs : T . . T . . . . AGG T . . . . .
blockSeqs : T . . T . . . . G T . . . . .
blockSeqs : A . . T . . . . G A . . . . .
blockSeqs : T . . C . . . . G T . . . . .
blockSeqs : T . . T . . . . T T . . . . .
blockSeqs : T . . T . . . . G T . . . . .
blockSeqs : A . . A . . . . G A . . . . .
blockSeqs : A . . C . . . . G A . . . . .
blockSeqs : A . . G . . . . T A . . . . .
blockSeqs : A . . C . . . . T A . . . . .
blockSeqs : A . . C . . . . T T . . . . .
blockSeqs : T . . C . . . . G T . . . . .
blockSeqs : A . . T . . . . G A . . . . .
blockSeqs : A . . T . . . . T A . . . . .
blockSeqs : A . . C . . . . T A . . . . .
blockSeqs : A . . C . . . . T A . . . . .
blockSeqs : A . . C . . . . G T . . . . .
blockSeqs : T . . A . . . . T T . . . . .
blockSeqs : T . . T . . . . T A . . . . .
blockSeqs : A . . C . . . . T T . . . . .
blockSeqs : T . . T . . . . T A . . . . .
blockSeqs : A . . C . . . . T A . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
finalCons : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
Alignments
lowQualScore : 2 1 3333 22 1 1 22 1 7777777 1 1 1 1 222 1
lowQualScore : . . .... .. . . .. . ....... . . . . ... .
lowQualScore : 6 6 4444 00 6 6 22 6 2222222 6 6 6 6 888 7
consensus : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
Reference ( family-718 ) : TATATTAANAA-C----CCTT-CATC-TC-AA--CAGTCA-T--N----GNTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131932 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131933 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131934 : TATATTAATAA-C----CCTT-TATC-TT-AA--CTGTCA-T--G----GTTC-AT-TG-TG---TAAG-TCATTC
gi|131935 : TATATTAATAA-C----CCTT-TATC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TAAG-TCATTTGTCacc
gi|131936 : TATATTAAAAA-C----TCTT-CATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATTCATC
gi|131937 : TACATTAATAA-C----CCTT-TATC-TC-TA--CAGTTA-T--G----GTTCAAT-TG-TG---TAAG-TCATTCGTC
gi|131938 : TATATTATTAA-C----CCTT-TATC-TC-AA--CAGTCA-TAGG----GTTC-AT-TGATG---AGAG-TCATTCGT
gi|131939 : TATATTAATGA-C----CCTT-ATTC-TCAAA--CAGTCA-T--G----GTTG-ATATG-TG---TAAGTTCATTCATC
gi|131940 : TATATTAAAAA-C----CCTT-CATT-TC-AA--CATTTA-T--G----TATC-GT-TG-CG---TAAA-TCATTTGTC
gi|131941 : TATATTAAAAA-C----CCTT-GATT-TC-AA--CACTTA-T--T----GATC-GT-TG-CG---CAAG-TCATTTGTC
gi|131942 : TATTTTAAAAA-A----CCCT-CATT-TC-AA--CAATCA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC
gi|131943 : TATATTAAAAA-CGTACCTTT-CATT-TC-AA--CAGCCA-T--T----GATC-AT-TG-TG---CAAT-TCATTTGTC
gi|131944 : TGTATTAAAAAAC----CCTT-CATT-TC-AA--CAGTCATT--G----GTTC-AT-TG-TGTACTAAG-TCATTTGTC
gi|131945 : TATATTAATAA-C----CCTT-TATCTTC-AAACCAGTCA-T--G----GTTC-AT----TA---TAAA-TC-TTC
gi|131946 : TATATTAAAAA-C----CCTT-TATT-TC-AA--CAG--------------TC-AT-TG-TG---CAAG-TCATTTGTCa
gi|131947 : TATATCAAAAA-T----CCTT-CA-------A--CAGTTA-T--T----GATC-AT-TG-TG---TAAG-TCATT
gi|131948 : TATAT--AAAA-C----CCCT-CATT-TC-AA--CACTTA-T--ATATTGATC-AT-TG-TG---TAGG-TCATTCATC
gi|131949 : TATATTAAAAT-C----CCTA-CATT-TC-AA--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-ACACTC
gi|131950 : TATATTAAAAA-C----C------------AA--CAATCA-T--T----GATC-AT-TG-TG---TAAG-TCAGTCATCa
gi|131951 : TATCTTAATAA-C----CCTT-ATTC-TC-AA--CAGTTA-T--G----GTTC-AT-CG-TG---TA
gi|131952 : ACACTGATAG-C----CCTT-TATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-ACATTCGT
gi|131953 : ATTTTAAAAA-C----TCTT-CATT-TC-AA--CAGTTA-T--T----GATC-GT-TG-TA---TAAT-TCATTCATC
gi|131954 : ATAAATAA-C----CCTT-TATC-TC-AA--CAGTCA-T--T----GTTC-AT-TG-TG---TAAG-TCATTCGTC
gi|131955 : ATTAA-AA-T----CCTTACATT-TC-AC--CAATTA-T--T----GATC-AT-TG-CG---TAAG-TCATTCATC
gi|131956 : AAAAA-C----CTTT-CATT-TC-AG--CAGTTA-T--T----GATC-AT-TG-TG---CAAG-TCATTTGTC