lowQualScore : 111 1111111111111111 1111
lowQualScore : 0 77777 888 22 22 3 4 444 0000000000000000 1 444 222 1 1 1 1 1 3 1111 5555 1 3
lowQualScore : . ..... ... .. .. . . ... ................ . ... ... . . . . . . .... .... . .
lowQualScore : 8 99999 222 22 22 2 8 222 6666666666666666 6 444 888 6 6 7 7 7 3 3333 8888 7 3
consensus : TTTCCCCGGATTTTT--TTGATTGAC-G-AAGA--A--T-A-T-A-TT----------------G-T---TTAC---GA-AGG-A-G-TT-G-TCN---G----C-GAC-TGAT
Reference ( gi|89942 ) : TTTCCCCGGATTTTT--TTGATTGAC-A-AAGA--A--T-A-T-G-TT----------------G-T---TTAC---GA-AGG-A-G-TT-G-TCT---G----C-GAC-TGAT
gi|89943 : TTTCCCCGGATTTT---TTGATTGAC-G-AAGA--A--T-A-T-A-TT----------------GTT---TTAC---GA-AGG-A-G-TTGG-TCT---G----C-GCG-TGAT
gi|89948 : TTTCCCCGGACTTTT---TGATTGAC-G-AAGA--A--T-A-T-G-TT----------------G-T---TAAC---GA-AGG-A-G-TT-T-TAT---G----C-TAC-TGAT
gi|89946 : TTTTCCAGGATTTT---TTGATTGAC-A-AAGA--T--T-A-T-A-TT----------------G-T---TTAC---GA-AGG-A-A-TT-A-TCA---G----C-GAC-TGAT
gi|89944 : TTTTCCAGGATTTTT--TT-ATTGAC-G-AAGA--A--T-A-T-A-TT----------------A-T---TTAT---GA-AAG-A-G-TT-G-TCA---G----C-GAC-TGAT
gi|89947 : TTTTCCCAGATTTTT--T-GATTTAC-G-AAGA--A--T-A-T-A-TT----------------G-T---TTAC---AA-AGG-A-G-TT-G-TCA---G----C-AAT-TG
gi|89950 : TTTCCC-----TTAT--TTGACTAAC-G-AAGA--A--T-A-T-A-TT----------------G-T---TTAC---GA-AGG-A-G-TT-G-TCA---G----C-GAC-TGAT
gi|89953 : tTTCCCCCGGATTTT---TTGATTGACGA-AAAA--A--T-A-T-GATT----------------G-T---TTAC---GA-A-G-A-G-TT-GTTCT---A------GAC-TGAT
gi|89961 : TTTCCC---ATATAT--TTGATTGAC-G-AAGA--A--T-A-C-A-TT----------------G-T---TTAC---GA-AGG-A---TT-G-TCA---G----T-G-C-TGAT
gi|89954 : TTTTCCAGGATTTTT-----GTTGAC-G-AAGA--AAAT-A-T-A-TT----------------G-T---TTAA---GA-AGGTA-G-T--G-TCA---G----C-GAC-TGAT
gi|89951 : TTTTCCCGGATTTAT--T-GATTGAC-G-AAGA--A--TAA-T-A--T----------------G-T---TTAC----A-AGG-ATG-TT---TCA---G----C-GAC-TGAT
gi|89962 : TTTCCACAGATT-------AATTGAC-G-AAGA--A--T-G-T-ACTT----------------G-TG--TTAC---GA-AGG-A-G-TT-G-TCC---AGC--C-GAC-TGAT
gi|89949 : TTTCCCCCGACTTTT--T--ATTGAC-G-AAGA--A--T-A-T---TT----------------A-TCTCTCCC---GA-AGG-A---TT-GTTCT---G----C-GAC-TGA
gi|89945 : TTTTCCAGGATTTTTAATT-ATTGAC-G-AAGA--A--T-A-T-A-TT----------------A-T---TTAT---GA-AAG-A-G-CT-A-TGTCAAA----CAGAC-TGAT
gi|89956 : TTTTTCCGGAGTTTT--TTTTTTGAC-G-AGCA--A--T-AAT-A-TT----------------G-T---TTAC---AA-GGA-A-G-TT---TCA---G----C-GACTTGAT
gi|89957 : TTGCCCGGA--TTT--TTGATTGAC-GCAAGA--A--T-ATT-A-TT----------------G-T---TTAC---GA-AGG-A-G-TT-G-TCT---G----C-GAC-TGAT
gi|89958 : TTTCCCGGATTTTG--T-GATTGAC-G-AAGA--A--T-A-T----T----------------G-T---TTAC---GA-AGG-A-T-TT-G-TC----A----C-GAC-TGAT
gi|89960 : TTTCCCAGATTTTT--TTGATTGAC-G-AAG---A--T-A-T-A-TT----------------G-G---TTAC---GA-AGC-A-T-TT-G-TCA---G----C-GACATGAT
gi|89959 : TTTCCCGGATTTTT--T-GATTGA--A-AAGA--A----A-T-A-TT----------------A-T---TTCC---GA-AAG-G-G-TT-G-TTC---G----C-GAC-TGAT
gi|89964 : TCCCTGGATTTT----TGATTGAC-G-AAGAATA--T-A-T-A-TT----------------G-T---TTACGCTGA-CGG-A-G-TT-G-TCA---G----C-GAC-TGA
gi|89952 : CCCGGATTTTT--G-GATTGAC-G-AAGA--A--T-A-T-T-AT----------------G-T---TTAC---GA-----A-G-TT-G-TCA---G----C-GGC-TGAT
gi|89955 : ttatGATTTTT--TTA--TGAC-A-AAGA--A--TTA-TTA-TT----------------G-T---TTAC---GA-TGA-G-G-TT-G-TCA---G----C-GAC-TGAT
gi|89965 : ttgtccTTTTT--TTAATTGAC-G-AAGA--A--T-A-T-A-TT----------------G-T---TTAC---AA-AGG-
gi|89966 : ttcccgagttcTTTT--TTTATTGAC----AGA--A--T-A-T-A--T----------------G-T---TTAC---GA-AGA-A-GTTT-G-TCA---G----C-GAC-TGAT
gi|89963 : TTTT--ATGATTGAC-G-AAGA--A--T-A-T-A-TTACAATACTGAAATATTG-T---TTA----GA-AGG-A-A-TT-A-TCT---G----T-GAC-AGAT
gi|89967 : ttttctagaGATTGAC-G-AAGA--A--T-ACT-ATTT----------------G-T---TTAC---GAGAGG-A-G-TT-G-TCT---GTCAAC-GAC-TG
Alignments
lowQualScore : 1111111111111111
lowQualScore : 0 66666 3 22 22 3333333333333333 55 3 3 1 1 1 222 1 1 1 1 22 1 1 22 5555 1 3
lowQualScore : . ..... . .. .. ................ .. . . . . . ... . . . . .. . . .. .... . .
lowQualScore : 3 55555 1 11 11 3333333333333333 22 1 1 5 5 5 777 5 5 6 6 22 6 6 66 6666 6 2
consensus : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T--T-G-TC-AG----C-GAC-TGAT
Reference ( family-707 ) : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T--T-G-TC-NG----C-GAC-TGAT
gi|89942 : TTTCCCCGGATTTTT--TTGATTGACA-AAGA--A--T----------------A--T-G-T-TG-T-TTAC---GA-AGG-A-G-T--T-G-TC-TG----C-GAC-TGAT
gi|89943 : TTTCCCCGGATTTT---TTGATTGACG-AAGA--A--T----------------A--T-A-T-TGTT-TTAC---GA-AGG-A-G-T--TGG-TC-TG----C-GCG-TGAT
gi|89944 : TTTTCCAGGATTTTT--TT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-T--T-G-TC-AG----C-GAC-TGAT
gi|89945 : TTTTCCAGGATTTTTAATT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-CTAT-G-TCAAA----CAGAC-TGAT
gi|89946 : TTTTCCAGGATTTT---TTGATTGACA-AAGA--T--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-A-T--T-A-TC-AG----C-GAC-TGAT
gi|89947 : TTTTCCCAGATTTTT--T-GATTTACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-A-G-T--T-G-TC-AG----C-AAT-TG
gi|89948 : TTTCCCCGGACTTTT---TGATTGACG-AAGA--A--T----------------A--T-G-T-TG-T-TAAC---GA-AGG-A-G-T--T-T-TA-TG----C-TAC-TGAT
gi|89949 : TTTCCCCCGACTTTT--T--ATTGACG-AAGA--A--T----------------ATTT-A-T-CT-C-TCCC---GA-AGG-A---T--T-GTTC-TG----C-GAC-TGA
gi|89950 : TTTCCC-----TTAT--TTGACTAACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T--T-G-TC-AG----C-GAC-TGAT
gi|89951 : tTTTTCCCGGATTTAT--T-GATTGACG-AAGA--A--T----------------A----A-TATG-T-TTAC----A-AGG-ATG-T--T---TC-AG----C-GAC-TGAT
gi|89952 : CCCGGATTTTT--G-GATTGACG-AAGA--A--T----------------A--T-T-A-TG-T-TTAC---GA-----A-G-T--T-G-TC-AG----C-GGC-TGAT
gi|89953 : ttatTTCCCCCGGATTTT---TTGATTGACGAAAAA--A--T----------------A--TGA-T-TG-T-TTAC---GA-A-G-A-G-T--T-G-TT-CT----A-GAC-TGAT
gi|89954 : TTTTCCAGGATTTTT-----GTTGACG-AAGA--AAAT----------------A--T-A-T-TG-T-TTAA---GA-AGGTA-G----T-G-TC-AG----C-GAC-TGAT
gi|89955 : GATTTTT--TTA--TGACA-AAGA--A--TT---------------A--TTA-T-TG-T-TTAC---GA-TGA-G-G-T--T-G-TC-AG----C-GAC-TGAT
gi|89956 : ttgtccTTTTTCCGGAGTTTT--TTTTTTGACG-AGCA--A--TA---------------A--T-A-T-TG-T-TTAC---AA-GGA-A-G-T--T---TC-AG----C-GACTTGAT
gi|89957 : TTGCCCGGA--TTT--TTGATTGACGCAAGA--A--T----------------AT-T-A-T-TG-T-TTAC---GA-AGG-A-G-T--T-G-TC-TG----C-GAC-TGAT
gi|89958 : TTTCCCGGATTTTG--T-GATTGACG-AAGA--A--T----------------A--T-----TG-T-TTAC---GA-AGG-A-T-T--T-G-TC-A-----C-GAC-TGAT
gi|89959 : TTTCCCGGATTTTT--T-GATTGA-A-AAGA--A-------------------A--T-A-T-TA-T-TTCC---GA-AAG-G-G-T--T-G-TT-CG----C-GAC-TGAT
gi|89960 : TTTCCCAGATTTTT--TTGATTGACG-AAG---A--T----------------A--T-A-T-TG-G-TTAC---GA-AGC-A-T-T--T-G-TC-AG----C-GACATGAT
gi|89961 : TTTCCC---ATATAT--TTGATTGACG-AAGA--A--T----------------A--C-A-T-TG-T-TTAC---GA-AGG-A---T--T-G-TC-AG----T-G-C-TGAT
gi|89962 : TTTCCACAGATT-------AATTGACG-AAGA--A--T----------------G--T-ACT-TG-TGTTAC---GA-AGG-A-G-T--T-G-TC-CAGC--C-GAC-TGAT
gi|89963 : TTTT--ATGATTGACG-AAGA--A--TATATTACAATACTGAAA--T-A-T-TG-T-TTA----GA-AGG-A-A-T--T-A-TC-TG----T-GAC-AGAT
gi|89964 : ttttctagaTCCCTGGATTTT----TGATTGACG-AAGAATA--T----------------A--T-A-T-TG-T-TTACGCTGA-CGG-A-G-T--T-G-TC-AG----C-GAC-TGA
gi|89965 : TTTTT--TTAATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-
gi|89966 : ttcccgagttcTTTT--TTTATTGAC---AGA--A--T----------------A--T-A-T--G-T-TTAC---GA-AGA-A-GTT--T-G-TC-AG----C-GAC-TGAT
gi|89967 : GATTGACG-AAGA--A--T----------------AC-T-ATT-TG-T-TTAC---GAGAGG-A-G-T--T-G-TC-TGTCAAC-GAC-TG
Alignments
lowQualScore : 1111111111111111
lowQualScore : 0 66666 3 22 22 1111111111111111 66 3 3 1 1 1 222 1 1 1 1 5555 1 1 1 1 1 1 3
lowQualScore : . ..... . .. .. ................ .. . . . . . ... . . . . .... . . . . . . .
lowQualScore : 3 55555 1 11 11 7777777777777777 77 1 1 5 5 5 777 5 5 6 6 6666 6 6 6 6 6 6 2
consensus : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
Reference ( family-707 ) : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89942 : TTTCCCCGGATTTTT--TTGATTGACA-AAGA--A--T----------------A--T-G-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-TG-C-GAC-TGAT
gi|89943 : TTTCCCCGGATTTT---TTGATTGACG-AAGA--A--T----------------A--T-A-T-TGTT-TTAC---GA-AGG-A-G-T----TGG-T-C-TG-C-GCG-TGAT
gi|89944 : TTTTCCAGGATTTTT--TT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89945 : TTTTCCAGGATTTTTAATT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-CTA--T-G-T-CAAA-CAGAC-TGAT
gi|89946 : TTTTCCAGGATTTT---TTGATTGACA-AAGA--T--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-A-T----T-A-T-C-AG-C-GAC-TGAT
gi|89947 : TTTTCCCAGATTTTT--T-GATTTACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-A-G-T----T-G-T-C-AG-C-AAT-TG
gi|89948 : TTTCCCCGGACTTTT---TGATTGACG-AAGA--A--T----------------A--T-G-T-TG-T-TAAC---GA-AGG-A-G-T----T-T-T-A-TG-C-TAC-TGAT
gi|89949 : TTTCCCCCGACTTTT--T--ATTGACG-AAGA--A--T----------------ATTT-A-T-CT-C-TCCC---GA-AGG-A---T----T-GTT-C-TG-C-GAC-TGA
gi|89950 : TTTCCC-----TTAT--TTGACTAACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89951 : tTTTTCCCGGATTTAT--T-GATTGACG-AAGA--A--T----------------A----A-TATG-T-TTAC----A-AGG-ATG-T----T---T-C-AG-C-GAC-TGAT
gi|89952 : CCCGGATTTTT--G-GATTGACG-AAGA--A--T----------------A--T-T-A-TG-T-TTAC---GA-----A-G-T----T-G-T-C-AG-C-GGC-TGAT
gi|89953 : ttatTTCCCCCGGATTTT---TTGATTGACGAAAAA--A--T----------------A--TGA-T-TG-T-TTAC---GA-A-G-A-G-T----T-G-T-T-CT-A-GAC-TGAT
gi|89954 : TTTTCCAGGATTTTT-----GTTGACG-AAGA--AAAT----------------A--T-A-T-TG-T-TTAA---GA-AGGTA-G------T-G-T-C-AG-C-GAC-TGAT
gi|89955 : GATTTTT--TTA--TGACA-AAGA--A--TT---------------A--TTA-T-TG-T-TTAC---GA-TGA-G-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89956 : ttgtccTTTTTCCGGAGTTTT--TTTTTTGACG-AGCA--A--T----------------AA-T-A-T-TG-T-TTAC---AA-GGA-A-G-T----T---T-C-AG-C-GACTTGAT
gi|89957 : TTGCCCGGA--TTT--TTGATTGACGCAAGA--A--T----------------AT-T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-TG-C-GAC-TGAT
gi|89958 : TTTCCCGGATTTTG--T-GATTGACG-AAGA--A--T----------------A--T-----TG-T-TTAC---GA-AGG-A-T-T----T-G-T-C-A--C-GAC-TGAT
gi|89959 : TTTCCCGGATTTTT--T-GATTGA-A-AAGA--A-------------------A--T-A-T-TA-T-TTCC---GA-AAG-G-G-T----T-G-T-T-CG-C-GAC-TGAT
gi|89960 : TTTCCCAGATTTTT--TTGATTGACG-AAG---A--T----------------A--T-A-T-TG-G-TTAC---GA-AGC-A-T-T----T-G-T-C-AG-C-GACATGAT
gi|89961 : TTTCCC---ATATAT--TTGATTGACG-AAGA--A--T----------------A--C-A-T-TG-T-TTAC---GA-AGG-A---T----T-G-T-C-AG-T-G-C-TGAT
gi|89962 : TTTCCACAGATT-------AATTGACG-AAGA--A--T----------------G--T-ACT-TG-TGTTAC---GA-AGG-A-G-T----T-G-TCC-AGCC-GAC-TGAT
gi|89963 : TTTT--ATGATTGACG-AAGA--A--TATATTACAATACTGAAA--T-A-T-TG-T-TTA----GA-AGG-A-A-T----T-A-T-C-TG-T-GAC-AGAT
gi|89964 : ttttctagaTCCCTGGATTTT----TGATTGACG-AAGAATA--T----------------A--T-A-T-TG-T-TTACGCTGA-CGG-A-G-T----T-G-T-C-AG-C-GAC-TGA
gi|89965 : TTTTT--TTAATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-
gi|89966 : ttcccgagttcTTTT--TTTATTGAC---AGA--A--T----------------A--T-A-T--G-T-TTAC---GA-AGA-A-GTT----T-G-T-C-AG-C-GAC-TGAT
gi|89967 : GATTGACG-AAGA--A--T----------------AC-T-ATT-TG-T-TTAC---GAGAGG-A-G-TTGTCT-G-T-C-AA-C-GAC-TG
Alignments
lowQualScore : 1111111111111111
lowQualScore : 0 66666 3 22 22 1111111111111111 66 3 3 1 1 1 222 1 1 1 1 5555 1 1 1 1 1 1 3
lowQualScore : . ..... . .. .. ................ .. . . . . . ... . . . . .... . . . . . . .
lowQualScore : 3 55555 1 11 11 7777777777777777 77 1 1 5 5 5 777 5 5 6 6 6666 6 6 6 6 6 6 2
consensus : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
Reference ( family-707 ) : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89942 : TTTCCCCGGATTTTT--TTGATTGACA-AAGA--A--T----------------A--T-G-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-TG-C-GAC-TGAT
gi|89943 : TTTCCCCGGATTTT---TTGATTGACG-AAGA--A--T----------------A--T-A-T-TGTT-TTAC---GA-AGG-A-G-T----TGG-T-C-TG-C-GCG-TGAT
gi|89944 : TTTTCCAGGATTTTT--TT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89945 : TTTTCCAGGATTTTTAATT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-CTA--T-G-T-CAAA-CAGAC-TGAT
gi|89946 : TTTTCCAGGATTTT---TTGATTGACA-AAGA--T--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-A-T----T-A-T-C-AG-C-GAC-TGAT
gi|89947 : TTTTCCCAGATTTTT--T-GATTTACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-A-G-T----T-G-T-C-AG-C-AAT-TG
gi|89948 : TTTCCCCGGACTTTT---TGATTGACG-AAGA--A--T----------------A--T-G-T-TG-T-TAAC---GA-AGG-A-G-T----T-T-T-A-TG-C-TAC-TGAT
gi|89949 : TTTCCCCCGACTTTT--T--ATTGACG-AAGA--A--T----------------ATTT-A-T-CT-C-TCCC---GA-AGG-A---T----T-GTT-C-TG-C-GAC-TGA
gi|89950 : TTTCCC-----TTAT--TTGACTAACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89951 : tTTTTCCCGGATTTAT--T-GATTGACG-AAGA--A--T----------------A----A-TATG-T-TTAC----A-AGG-ATG-T----T---T-C-AG-C-GAC-TGAT
gi|89952 : CCCGGATTTTT--G-GATTGACG-AAGA--A--T----------------A--T-T-A-TG-T-TTAC---GA-----A-G-T----T-G-T-C-AG-C-GGC-TGAT
gi|89953 : ttatTTCCCCCGGATTTT---TTGATTGACGAAAAA--A--T----------------A--TGA-T-TG-T-TTAC---GA-A-G-A-G-T----T-G-T-T-CT-A-GAC-TGAT
gi|89954 : TTTTCCAGGATTTTT-----GTTGACG-AAGA--AAAT----------------A--T-A-T-TG-T-TTAA---GA-AGGTA-G------T-G-T-C-AG-C-GAC-TGAT
gi|89955 : GATTTTT--TTA--TGACA-AAGA--A--TT---------------A--TTA-T-TG-T-TTAC---GA-TGA-G-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89956 : ttgtccTTTTTCCGGAGTTTT--TTTTTTGACG-AGCA--A--T----------------AA-T-A-T-TG-T-TTAC---AA-GGA-A-G-T----T---T-C-AG-C-GACTTGAT
gi|89957 : TTGCCCGGA--TTT--TTGATTGACGCAAGA--A--T----------------AT-T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-TG-C-GAC-TGAT
gi|89958 : TTTCCCGGATTTTG--T-GATTGACG-AAGA--A--T----------------A--T-----TG-T-TTAC---GA-AGG-A-T-T----T-G-T-C-A--C-GAC-TGAT
gi|89959 : TTTCCCGGATTTTT--T-GATTGA-A-AAGA--A-------------------A--T-A-T-TA-T-TTCC---GA-AAG-G-G-T----T-G-T-T-CG-C-GAC-TGAT
gi|89960 : TTTCCCAGATTTTT--TTGATTGACG-AAG---A--T----------------A--T-A-T-TG-G-TTAC---GA-AGC-A-T-T----T-G-T-C-AG-C-GACATGAT
gi|89961 : TTTCCC---ATATAT--TTGATTGACG-AAGA--A--T----------------A--C-A-T-TG-T-TTAC---GA-AGG-A---T----T-G-T-C-AG-T-G-C-TGAT
gi|89962 : TTTCCACAGATT-------AATTGACG-AAGA--A--T----------------G--T-ACT-TG-TGTTAC---GA-AGG-A-G-T----T-G-TCC-AGCC-GAC-TGAT
gi|89963 : TTTT--ATGATTGACG-AAGA--A--TATATTACAATACTGAAA--T-A-T-TG-T-TTA----GA-AGG-A-A-T----T-A-T-C-TG-T-GAC-AGAT
gi|89964 : ttttctagaTCCCTGGATTTT----TGATTGACG-AAGAATA--T----------------A--T-A-T-TG-T-TTACGCTGA-CGG-A-G-T----T-G-T-C-AG-C-GAC-TGA
gi|89965 : TTTTT--TTAATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-
gi|89966 : ttcccgagttcTTTT--TTTATTGAC---AGA--A--T----------------A--T-A-T--G-T-TTAC---GA-AGA-A-GTT----T-G-T-C-AG-C-GAC-TGAT
gi|89967 : GATTGACG-AAGA--A--T----------------AC-T-ATT-TG-T-TTAC---GAGAGG-A-G-TTGTCT-G-T-C-AA-C-GAC-TG
blockSeqs : TAATT A AT AA ATATTACAATACTGAA TT G C A T G GCT G T T T TGTC G T C A C A T
blockSeqs : TTT C . . T A T T . . . . . . . . TA . . . . . . A
blockSeqs : TTT . . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : TTT . . . . C . . . . . . . . . . . . . . . . . .
blockSeqs : TTT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TTT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TTT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TTT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TAT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TTT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TTT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TG . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : GT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : TT . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : TTT**
originalCons : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
finalCons : TTTCCCCGGATTTTTTT--GATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
Alignments
lowQualScore : 1111111111111111
lowQualScore : 0 66666 3 22 22 1111111111111111 66 3 3 1 1 1 222 1 1 1 1 5555 1 1 1 1 1 1 3
lowQualScore : . ..... . .. .. ................ .. . . . . . ... . . . . .... . . . . . . .
lowQualScore : 3 55555 1 11 11 7777777777777777 77 1 1 5 5 5 777 5 5 6 6 6666 6 6 6 6 6 6 2
consensus : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
Reference ( family-707 ) : TTTCCCCGGATTTTT--TTGATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89942 : TTTCCCCGGATTTTT--TTGATTGACA-AAGA--A--T----------------A--T-G-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-TG-C-GAC-TGAT
gi|89943 : TTTCCCCGGATTTT---TTGATTGACG-AAGA--A--T----------------A--T-A-T-TGTT-TTAC---GA-AGG-A-G-T----TGG-T-C-TG-C-GCG-TGAT
gi|89944 : TTTTCCAGGATTTTT--TT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89945 : TTTTCCAGGATTTTTAATT-ATTGACG-AAGA--A--T----------------A--T-A-T-TA-T-TTAT---GA-AAG-A-G-CTA--T-G-T-CAAA-CAGAC-TGAT
gi|89946 : TTTTCCAGGATTTT---TTGATTGACA-AAGA--T--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-A-T----T-A-T-C-AG-C-GAC-TGAT
gi|89947 : TTTTCCCAGATTTTT--T-GATTTACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-A-G-T----T-G-T-C-AG-C-AAT-TG
gi|89948 : TTTCCCCGGACTTTT---TGATTGACG-AAGA--A--T----------------A--T-G-T-TG-T-TAAC---GA-AGG-A-G-T----T-T-T-A-TG-C-TAC-TGAT
gi|89949 : TTTCCCCCGACTTTT--T--ATTGACG-AAGA--A--T----------------ATTT-A-T-CT-C-TCCC---GA-AGG-A---T----T-GTT-C-TG-C-GAC-TGA
gi|89950 : TTTCCC-----TTAT--TTGACTAACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89951 : tTTTTCCCGGATTTAT--T-GATTGACG-AAGA--A--T----------------A----A-TATG-T-TTAC----A-AGG-ATG-T----T---T-C-AG-C-GAC-TGAT
gi|89952 : CCCGGATTTTT--G-GATTGACG-AAGA--A--T----------------A--T-T-A-TG-T-TTAC---GA-----A-G-T----T-G-T-C-AG-C-GGC-TGAT
gi|89953 : ttatTTCCCCCGGATTTT---TTGATTGACGAAAAA--A--T----------------A--TGA-T-TG-T-TTAC---GA-A-G-A-G-T----T-G-T-T-CT-A-GAC-TGAT
gi|89954 : TTTTCCAGGATTTTT-----GTTGACG-AAGA--AAAT----------------A--T-A-T-TG-T-TTAA---GA-AGGTA-G------T-G-T-C-AG-C-GAC-TGAT
gi|89955 : GATTTTT--TTA--TGACA-AAGA--A--TT---------------A--TTA-T-TG-T-TTAC---GA-TGA-G-G-T----T-G-T-C-AG-C-GAC-TGAT
gi|89956 : ttgtccTTTTTCCGGAGTTTT--TTTTTTGACG-AGCA--A--T----------------AA-T-A-T-TG-T-TTAC---AA-GGA-A-G-T----T---T-C-AG-C-GACTTGAT
gi|89957 : TTGCCCGGA--TTT--TTGATTGACGCAAGA--A--T----------------AT-T-A-T-TG-T-TTAC---GA-AGG-A-G-T----T-G-T-C-TG-C-GAC-TGAT
gi|89958 : TTTCCCGGATTTTG--T-GATTGACG-AAGA--A--T----------------A--T-----TG-T-TTAC---GA-AGG-A-T-T----T-G-T-C-A--C-GAC-TGAT
gi|89959 : TTTCCCGGATTTTT--T-GATTGA-A-AAGA--A-------------------A--T-A-T-TA-T-TTCC---GA-AAG-G-G-T----T-G-T-T-CG-C-GAC-TGAT
gi|89960 : TTTCCCAGATTTTT--TTGATTGACG-AAG---A--T----------------A--T-A-T-TG-G-TTAC---GA-AGC-A-T-T----T-G-T-C-AG-C-GACATGAT
gi|89961 : TTTCCC---ATATAT--TTGATTGACG-AAGA--A--T----------------A--C-A-T-TG-T-TTAC---GA-AGG-A---T----T-G-T-C-AG-T-G-C-TGAT
gi|89962 : TTTCCACAGATT-------AATTGACG-AAGA--A--T----------------G--T-ACT-TG-TGTTAC---GA-AGG-A-G-T----T-G-TCC-AGCC-GAC-TGAT
gi|89963 : TTTT--ATGATTGACG-AAGA--A--TATATTACAATACTGAAA--T-A-T-TG-T-TTA----GA-AGG-A-A-T----T-A-T-C-TG-T-GAC-AGAT
gi|89964 : ttttctagaTCCCTGGATTTT----TGATTGACG-AAGAATA--T----------------A--T-A-T-TG-T-TTACGCTGA-CGG-A-G-T----T-G-T-C-AG-C-GAC-TGA
gi|89965 : TTTTT--TTAATTGACG-AAGA--A--T----------------A--T-A-T-TG-T-TTAC---AA-AGG-
gi|89966 : ttcccgagttcTTTT--TTTATTGAC---AGA--A--T----------------A--T-A-T--G-T-TTAC---GA-AGA-A-GTT----T-G-T-C-AG-C-GAC-TGAT
gi|89967 : GATTGACG-AAGA--A--T----------------AC-T-ATT-TG-T-TTAC---GAGAGG-A-G-TTGTCT-G-T-C-AA-C-GAC-TG