lowQualScore                  :                                                  111                                                                   
lowQualScore                  :        5   1       99 4    9  1 77 3  4 1  1     777    5555   4   1  44 22       3333      22         22     2        
lowQualScore                  :        .   .       .. .    .  . .. .  . .  .     ...    ....   .   .  .. ..       ....      ..         ..     .        
lowQualScore                  :        0   7       00 8    6  6 00 2  8 6  6     000    0000   8   6  44 55       9999      55         99     2        
consensus                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTG-A-CGGA----CTC-CGT-GCCAG--TCAGAAA----TTTCTT--TCTCCACCT--ACGAA-CTGTCCCA
Reference ( gi|114717 )       : TACAGTC-ACA-GGTCGGCT-A-GATT-TT-G--C-TG-C-AT-CTTTG-C-CGGA----CTC-TGT-GCTAG--TCAGAAA----TTTCTT--TCTCCACCT--ACGAA-CTGTCTCA
gi|114718                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTA-AACGGA----CTC-TGT-GCCAG--TCAGAAA----TTTCTT--TCTCCACCT--AAGAA-CTGTCTCA
gi|114721                     : TACTGTC-ACA-GGTTGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTG-C-CAGA----CTC-TGT-GCTAG--TCAGAAA----TGTCTT--TCCCCACCT--ATGCA-CTATCTCA
gi|114719                     : TACAGTC-ACA-GGTCGGTC-A-GATT-TT-G--C-TC-C-AT-CTATG-A-CGAA----CTC-TGT-GTCAG--TCAGAAA----TTTCTT--TCTTCACCT--ACGAA-CTGTCTCA
gi|114722                     : TATAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTG-A-CTGA----CTC-TGT-GCCAG--TCA-ATT----TTTTTT--TCTCCACCT--ACGAA-CTGTCTCA
gi|114720                     : TACAATC-ACA-GGTCTGCCCA-GATT-TT-G--C-CG-C-AT-CTTTG-A-CGGA----GTC-CGT-GCCAG--TCAGAGA----TTTCTT--TTTCCACCT--ATGAA-CTGTCCCA
gi|114726                     : TACAGTC-ACA-GGTCGGCA-A-GATT-TT-G--C-TG-C-AT-CTTTG-A-CGGA----CTT-TGT-GCCGG--TCA-ATA----T---TT--TTTCCAGCT--ACGAA-CTGTCTCA
gi|114724                     : TACAGTC-ACA-GGTTCACC-A-AATT-TT-G--CAGG-C-AT-CTTCG-A-CGGA----CTC-CGT-GCCAG--TCAGAAA----TTACTT--TCTCCACCT--ATGAA-CTGTCCCA
gi|114723                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-G--C-CG-C-AT-CTTCG-A-CGGA----CTC-TGT-GCCAC--TCAGATA----TTTTGT--TCTCCACCT--ATGAA-CTGTCCCA
gi|114725                     : TGCAGTC-ACA-AG---GCC-A-GATT-TT-G--C-CG-C-AT-CTTGG-A-CGGA----CTT-CGT-GTCCG--TCAGAAA----TTTCTT--TCTCCACCT--ATGAA-CTGTCCCA
gi|114727                     : TACAGTC-ACA-GGTTGGCC-A-GATTGTT-G--C-TG-CCAT-CTTTG-A-CGGA----CGC-TGT-GCCAG--TCAGAAA----TGTCTT--TC-CCA-CT--ACAAACCTGT
gi|114728                     : TACAGTC-ACA-GGGCGGTC-A-GA-------------------CTTTG-A-CGGA----CTC-TGT-GCCAG--TCAGAAA----TTT-TT--TTTCCACCT--GCGAA-CTGTCTCAtc
gi|114731                     : TACATTT-ACA-GGTCAACTTA-GATC-TT-G--C-TG-C-AT-CGTTG-C-CGGA----CTC-CGT-GACAT--TCAGAAA----TTTATT--TCTCCACCT--
gi|114729                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-TTCC-TA-A-AG--TTCG-A-CGGAA---CTC-CGT-GCCAG--TCAGAAA----TTTCTT--TCTCCA-CT--ATGAA-CTGTTCCAgtaaa
gi|114730                     : TACAGTC-ACA-GGTCCATC-A-GATTCTT-G--CCTA-A-AT-GTTCA-A-CGGAATCACTC--GTCGCTAG--T--AAAA----TTTCTT--TCTCCACCT--ATGAA-CTGTCCCA
gi|114732                     : TATAGTC-ACAAGGTCCATC-A-GATT-TTTG--C-CG-A-AT-GTTCG-A-CGGA----CTC-CGT-GGCAG--TCAGAAA----ATT-TT--TCTCCACCT--ATTAA-
gi|114736                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGAC-CAGA----CTCTTTT-GCT----TTACAGA----TTTCTC--TCTCC
gi|114735                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGAC-CAGA----CTCTTTT-GCT----TTACAGA----TTTCTC--TCTCCcagccatgttgttcca
gi|114734                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGAC-CAGA----CTCTTTT-GCT----TTACAGA----TTTCTC--TCTCCcagccatgttgttcca
gi|114733                     : TACAGT--ACA-GTTCTATC-A-AAGTGTT-G--C--G-C-AT-CT----CACGGA----CTC-CGG-GC--A--TCAGAAA----TTTCTT--TCT-AACCT--ATGAA-CTGTCCCAcagccatgttgttcca
gi|114739                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTG-A-CAGA----CTC-TGT-GC
gi|114738                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTG-A-CAGA----CTC-TGT-GC
gi|114737                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTG-A-CAGA----CTC-TGT-GC
gi|114740                     :   CAGTC-ACA-TGTTGGCC-A-GATT-TT-G--C-TA-C-AT-CTTTT-A-CGGA----CTC-TGT-GCTAG--TCCGAAA----TTTCTT--TCTCCATCT--ACAAA-CTGTCTCA
gi|114741                     :        -ACA-G-TTGGCC-A-GATT-TT-G--C-AG-A-ATTCATTG-A-CGGA----CTC-TGT-GCCAGATTCAGAAAAAGTTTTCATAGTCTCCACCTTAACGAA-CTG
gi|114742                     :                     -A-GATA-TT-G--C-TG-T-AT-CATTG-A-CAGA----ATC-TGT-GCGAG--TCAGAAA----TTTCTT--TCTCCACCT--ACGAA-CTGTCTCA





Alignments
lowQualScore                  :        4   1        3 4    9  1 66 3  4 1  1      6    1   8888  1   0 22       3333      22   5      22     1        
lowQualScore                  :        .   .        . .    .  . .. .  . .  .      .    .   ....  .   . ..       ....      ..   .      ..     .        
lowQualScore                  :        8   6        1 6    2  5 77 1  6 5  5      2    5   4444  5   1 44       7777      44   2      44     8        
consensus                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA
Reference ( family-700 )      : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA
gi|114717                     : TACAGTC-ACA-GGTCGGCT-A-GATT-TT-G--C-TG-C-AT-CTTTGC-CGGA-CTC---TGT-GCTAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCTCA
gi|114718                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTAAACGGA-CTC---TGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--AAGAA-CTGTCTCA
gi|114719                     : TACAGTC-ACA-GGTCGGTC-A-GATT-TT-G--C-TC-C-AT-CTATGA-CGAA-CTC---TGT-GTCAG--TCAGAAA----TTTCTT--TCT-TCACCT--ACGAA-CTGTCTCA
gi|114720                     : TACAATC-ACA-GGTCTGCCCA-GATT-TT-G--C-CG-C-AT-CTTTGA-CGGA-GTC---CGT-GCCAG--TCAGAGA----TTTCTT--TTT-CCACCT--ATGAA-CTGTCCCA
gi|114721                     : TACTGTC-ACA-GGTTGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGC-CAGA-CTC---TGT-GCTAG--TCAGAAA----TGTCTT--TCC-CCACCT--ATGCA-CTATCTCA
gi|114722                     : TATAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CTGA-CTC---TGT-GCCAG--TCA-ATT----TTTTTT--TCT-CCACCT--ACGAA-CTGTCTCA
gi|114723                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-G--C-CG-C-AT-CTTCGA-CGGA-CTC---TGT-GCCAC--TCAGATA----TTTTGT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114724                     : TACAGTC-ACA-GGTTCACC-A-AATT-TT-G--CAGG-C-AT-CTTCGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTACTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114725                     : TGCAGTC-ACA-AG---GCC-A-GATT-TT-G--C-CG-C-AT-CTTGGA-CGGA-CTT---CGT-GTCCG--TCAGAAA----TTTCTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114726                     : TACAGTC-ACA-GGTCGGCA-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTT---TGT-GCCGG--TCA-ATA----T---TT--TTT-CCAGCT--ACGAA-CTGTCTCA
gi|114727                     : TACAGTC-ACA-GGTTGGCC-A-GATTGTT-G--C-TG-CCAT-CTTTGA-CGGA-CGC---TGT-GCCAG--TCAGAAA----TGTCTT--TC--CCA-CT--ACAAACCTGTTC
gi|114728                     : TACAGTC-ACA-GGGCGGTC-A-GA-------------------CTTTGA-CGGA-CTC---TGT-GCCAG--TCAGAAA----TTT-TT--TTT-CCACCT--GCGAA-CTGTCTCA
gi|114729                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-TTCC-TA-A-AG--TTCGA-CGGAACTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCA-CT--ATGAA-CTGTTCCA
gi|114730                     : TACAGTC-ACA-GGTCCATC-A-GATTCTT-G--CCTA-A-AT-GTTCAA-CGGA-ATCACTCGTCGCTAG--T--AAAA----TTTCTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114731                     : TACATTT-ACA-GGTCAACTTA-GATC-TT-G--C-TG-C-AT-CGTTGC-CGGA-CTC---CGT-GACAT--TCAGAAA----TTTATT--TCT-CCACCT--
gi|114732                     : TATAGTC-ACAAGGTCCATC-A-GATT-TTTG--C-CG-A-AT-GTTCGA-CGGA-CTC---CGT-GGCAG--TCAGAAA----ATT-TT--TCT-CCACCT--ATTAA-gtaaa
gi|114733                     : TACAGT--ACA-GTTCTATC-A-AAGTGTT-G--C--G-C-AT-CTC--A-CGGA-CTC---CGG-GC--A--TCAGAAA----TTTCTT--TCT--AACCT--ATGAA-CTGTCCCA
gi|114734                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114735                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114736                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114737                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114738                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114739                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114740                     :   CAGTC-ACA-TGTTGGCC-A-GATT-TT-G--C-TA-C-AT-CTTTTA-CGGA-CTC---TGT-GCTAG--TCCGAAA----TTTCTT--TCT-CCATCT--ACAAA-CTGTCTCA
gi|114741                     :        -ACA-G-TTGGCC-A-GATT-TT-G--C-AG-A-ATTCATTGA-CGGA-CTC---TGT-GCCAGATTCAGAAAAAGTTTTCATAGTCT-CCACCTTAACGAA-CTG
gi|114742                     :                     -A-GATA-TT-G--C-TG-T-AT-CATTGA-CAGA-ATC---TGT-GCGAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCTCA





Alignments
lowQualScore                  :        4   1        3 4    9  1 66 3  4 1  1      6    1   8888  1   0 22       3333      22   5      22     1        
lowQualScore                  :        .   .        . .    .  . .. .  . .  .      .    .   ....  .   . ..       ....      ..   .      ..     .        
lowQualScore                  :        8   6        1 6    2  5 77 1  6 5  5      2    5   4444  5   1 44       7777      44   2      44     8        
consensus                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA
Reference ( family-700 )      : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA
gi|114717                     : TACAGTC-ACA-GGTCGGCT-A-GATT-TT-G--C-TG-C-AT-CTTTGC-CGGA-CTC---TGT-GCTAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCTCA
gi|114718                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTAAACGGA-CTC---TGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--AAGAA-CTGTCTCA
gi|114719                     : TACAGTC-ACA-GGTCGGTC-A-GATT-TT-G--C-TC-C-AT-CTATGA-CGAA-CTC---TGT-GTCAG--TCAGAAA----TTTCTT--TCT-TCACCT--ACGAA-CTGTCTCA
gi|114720                     : TACAATC-ACA-GGTCTGCCCA-GATT-TT-G--C-CG-C-AT-CTTTGA-CGGA-GTC---CGT-GCCAG--TCAGAGA----TTTCTT--TTT-CCACCT--ATGAA-CTGTCCCA
gi|114721                     : TACTGTC-ACA-GGTTGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGC-CAGA-CTC---TGT-GCTAG--TCAGAAA----TGTCTT--TCC-CCACCT--ATGCA-CTATCTCA
gi|114722                     : TATAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CTGA-CTC---TGT-GCCAG--TCA-ATT----TTTTTT--TCT-CCACCT--ACGAA-CTGTCTCA
gi|114723                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-G--C-CG-C-AT-CTTCGA-CGGA-CTC---TGT-GCCAC--TCAGATA----TTTTGT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114724                     : TACAGTC-ACA-GGTTCACC-A-AATT-TT-G--CAGG-C-AT-CTTCGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTACTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114725                     : TGCAGTC-ACA-AG---GCC-A-GATT-TT-G--C-CG-C-AT-CTTGGA-CGGA-CTT---CGT-GTCCG--TCAGAAA----TTTCTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114726                     : TACAGTC-ACA-GGTCGGCA-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTT---TGT-GCCGG--TCA-ATA----T---TT--TTT-CCAGCT--ACGAA-CTGTCTCA
gi|114727                     : TACAGTC-ACA-GGTTGGCC-A-GATTGTT-G--C-TG-CCAT-CTTTGA-CGGA-CGC---TGT-GCCAG--TCAGAAA----TGTCTT--TC--CCA-CT--ACAAACCTGTTC
gi|114728                     : TACAGTC-ACA-GGGCGGTC-A-GA-------------------CTTTGA-CGGA-CTC---TGT-GCCAG--TCAGAAA----TTT-TT--TTT-CCACCT--GCGAA-CTGTCTCA
gi|114729                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-TTCC-TA-A-AG--TTCGA-CGGAACTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCA-CT--ATGAA-CTGTTCCA
gi|114730                     : TACAGTC-ACA-GGTCCATC-A-GATTCTT-G--CCTA-A-AT-GTTCAA-CGGA-ATCACTCGTCGCTAG--T--AAAA----TTTCTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114731                     : TACATTT-ACA-GGTCAACTTA-GATC-TT-G--C-TG-C-AT-CGTTGC-CGGA-CTC---CGT-GACAT--TCAGAAA----TTTATT--TCT-CCACCT--
gi|114732                     : TATAGTC-ACAAGGTCCATC-A-GATT-TTTG--C-CG-A-AT-GTTCGA-CGGA-CTC---CGT-GGCAG--TCAGAAA----ATT-TT--TCT-CCACCT--ATTAA-gtaaa
gi|114733                     : TACAGT--ACA-GTTCTATC-A-AAGTGTT-G--C--G-C-AT-CTC--A-CGGA-CTC---CGG-GC--A--TCAGAAA----TTTCTT--TCT--AACCT--ATGAA-CTGTCCCA
gi|114734                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114735                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114736                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114737                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114738                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114739                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114740                     :   CAGTC-ACA-TGTTGGCC-A-GATT-TT-G--C-TA-C-AT-CTTTTA-CGGA-CTC---TGT-GCTAG--TCCGAAA----TTTCTT--TCT-CCATCT--ACAAA-CTGTCTCA
gi|114741                     :        -ACA-G-TTGGCC-A-GATT-TT-G--C-AG-A-ATTCATTGA-CGGA-CTC---TGT-GCCAGATTCAGAAAAAGTTTTCATAGTCT-CCACCTTAACGAA-CTG
gi|114742                     :                     -A-GATA-TT-G--C-TG-T-AT-CATTGA-CAGA-ATC---TGT-GCGAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCTCA


blockSeqs                     :        T   A        C A    G  T TC A  C C  T      A    A   ACTC  C     AT       AAGT      AG   C      TA     C
blockSeqs                     :        T   .        T A    C  . G  C  C .  .      C    .   TT    .     .        .         .    C      .      .
blockSeqs                     :        T   .        . A    G  . G  .  C .  .      C    .   TT    .     .        .         .    C      .      .
blockSeqs                     :        .   .        . .    G  . G  .  . .  .      C    .   TT    .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    G  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    G  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   C     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   C     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   C     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   C     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   C     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   C     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   C     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .      .
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .     .        .         .    .      .       
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .                                            
blockSeqs                     :        .   .        . .    .  . .  .  . .  .      .    .   T     .                                            
blockSeqs                     :                     . .    .  . .  .  . .  .      .    .   T     .                                            


blockSeqCons                  : 
originalCons                  : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA
finalCons                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA





Alignments
lowQualScore                  :        4   1        3 4    9  1 66 3  4 1  1      6    1   8888  1   0 22       3333      22   5      22     1        
lowQualScore                  :        .   .        . .    .  . .. .  . .  .      .    .   ....  .   . ..       ....      ..   .      ..     .        
lowQualScore                  :        8   6        1 6    2  5 77 1  6 5  5      2    5   4444  5   1 44       7777      44   2      44     8        
consensus                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA
Reference ( family-700 )      : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCCCA
gi|114717                     : TACAGTC-ACA-GGTCGGCT-A-GATT-TT-G--C-TG-C-AT-CTTTGC-CGGA-CTC---TGT-GCTAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCTCA
gi|114718                     : TACAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTAAACGGA-CTC---TGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCACCT--AAGAA-CTGTCTCA
gi|114719                     : TACAGTC-ACA-GGTCGGTC-A-GATT-TT-G--C-TC-C-AT-CTATGA-CGAA-CTC---TGT-GTCAG--TCAGAAA----TTTCTT--TCT-TCACCT--ACGAA-CTGTCTCA
gi|114720                     : TACAATC-ACA-GGTCTGCCCA-GATT-TT-G--C-CG-C-AT-CTTTGA-CGGA-GTC---CGT-GCCAG--TCAGAGA----TTTCTT--TTT-CCACCT--ATGAA-CTGTCCCA
gi|114721                     : TACTGTC-ACA-GGTTGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGC-CAGA-CTC---TGT-GCTAG--TCAGAAA----TGTCTT--TCC-CCACCT--ATGCA-CTATCTCA
gi|114722                     : TATAGTC-ACA-GGTCGGCC-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CTGA-CTC---TGT-GCCAG--TCA-ATT----TTTTTT--TCT-CCACCT--ACGAA-CTGTCTCA
gi|114723                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-G--C-CG-C-AT-CTTCGA-CGGA-CTC---TGT-GCCAC--TCAGATA----TTTTGT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114724                     : TACAGTC-ACA-GGTTCACC-A-AATT-TT-G--CAGG-C-AT-CTTCGA-CGGA-CTC---CGT-GCCAG--TCAGAAA----TTACTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114725                     : TGCAGTC-ACA-AG---GCC-A-GATT-TT-G--C-CG-C-AT-CTTGGA-CGGA-CTT---CGT-GTCCG--TCAGAAA----TTTCTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114726                     : TACAGTC-ACA-GGTCGGCA-A-GATT-TT-G--C-TG-C-AT-CTTTGA-CGGA-CTT---TGT-GCCGG--TCA-ATA----T---TT--TTT-CCAGCT--ACGAA-CTGTCTCA
gi|114727                     : TACAGTC-ACA-GGTTGGCC-A-GATTGTT-G--C-TG-CCAT-CTTTGA-CGGA-CGC---TGT-GCCAG--TCAGAAA----TGTCTT--TC--CCA-CT--ACAAACCTGTTC
gi|114728                     : TACAGTC-ACA-GGGCGGTC-A-GA-------------------CTTTGA-CGGA-CTC---TGT-GCCAG--TCAGAAA----TTT-TT--TTT-CCACCT--GCGAA-CTGTCTCA
gi|114729                     : TACAGTC-ACA-GGTCCATC-A-GATT-TT-TTCC-TA-A-AG--TTCGA-CGGAACTC---CGT-GCCAG--TCAGAAA----TTTCTT--TCT-CCA-CT--ATGAA-CTGTTCCA
gi|114730                     : TACAGTC-ACA-GGTCCATC-A-GATTCTT-G--CCTA-A-AT-GTTCAA-CGGA-ATCACTCGTCGCTAG--T--AAAA----TTTCTT--TCT-CCACCT--ATGAA-CTGTCCCA
gi|114731                     : TACATTT-ACA-GGTCAACTTA-GATC-TT-G--C-TG-C-AT-CGTTGC-CGGA-CTC---CGT-GACAT--TCAGAAA----TTTATT--TCT-CCACCT--
gi|114732                     : TATAGTC-ACAAGGTCCATC-A-GATT-TTTG--C-CG-A-AT-GTTCGA-CGGA-CTC---CGT-GGCAG--TCAGAAA----ATT-TT--TCT-CCACCT--ATTAA-gtaaa
gi|114733                     : TACAGT--ACA-GTTCTATC-A-AAGTGTT-G--C--G-C-AT-CTC--A-CGGA-CTC---CGG-GC--A--TCAGAAA----TTTCTT--TCT--AACCT--ATGAA-CTGTCCCA
gi|114734                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114735                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114736                     : TACAATTTACA-GGTCGGCC-A-GATTGTT-G--C-TGCC-AT-CTTTGACCAGA-CTCT--TTT-GCT----TTACAGA----TTTCTC--TCTCCCAGCC--ATG---TTGTTCCA
gi|114737                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114738                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114739                     : TACACTC-ACA-AGTCGGCC-AAGATT-GT-GG-C-TG-C-AT-CTTTGA-CAGA-CTC---TGT-GC
gi|114740                     :   CAGTC-ACA-TGTTGGCC-A-GATT-TT-G--C-TA-C-AT-CTTTTA-CGGA-CTC---TGT-GCTAG--TCCGAAA----TTTCTT--TCT-CCATCT--ACAAA-CTGTCTCA
gi|114741                     :        -ACA-G-TTGGCC-A-GATT-TT-G--C-AG-A-ATTCATTGA-CGGA-CTC---TGT-GCCAGATTCAGAAAAAGTTTTCATAGTCT-CCACCTTAACGAA-CTG
gi|114742                     :                     -A-GATA-TT-G--C-TG-T-AT-CATTGA-CAGA-ATC---TGT-GCGAG--TCAGAAA----TTTCTT--TCT-CCACCT--ACGAA-CTGTCTCA