lowQualScore                  :                    222222                                                   1111111111                        
lowQualScore                  :       1 1  1   1 1 999999 22 22 22 3     44444 55   1  1  1 4  1  33      1 3333333333    1  1  3    1 1      
lowQualScore                  :       . .  .   . . ...... .. .. .. .     ..... ..   .  .  . .  .  ..      . ..........    .  .  .    . .      
lowQualScore                  :       7 7  7   6 6 888888 22 22 22 2     00000 88   6  6  6 8  6  88      6 6666666666    6  6  2    6 6      
consensus                     : GGTCGA-T-AT-GCT-T-TT-----C--T--G--T-GAAGT-----CG-ATA-TA-TC-T-AT-GG--ATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
Reference ( gi|117234 )       : GGTCGA-T-AT-GCT-T-T------C--T--G--T-GAAGT-----CA-ATA-TA-TC-T-AT-GG--ATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117236                     : GGTCGA-T-AT-GCT-T-TT-----C--T--G--T-GAAGT-----CA-ATA-AA-TC-T-AT-GA--ATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117238                     : GGTTGA-C-AT-GCT-T-TA-----C--T--G--T-GAAGT-----TG-ATA-TA-TC-T-AT-GG--ATCGAC-A---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117240                     : GGTCGA-T-AT-GCT-T-TTT----C--T--G--T-GAAGT-----CG-ATA-TA-TC-T-AT-GGGGATCAAC-C---TA-A---TGAA-AG-GG-CTAT-A-TTTGCAtaat
gi|117241                     : GGTCGA-T-AT-GCT-T-TTACTTTC--T--G--T-GAAGT-----CG-TTA-TA-TC-T-AT-GG--GTCGAC-C---CC-A---TGAA-AG-GG-CTAT-G-TTTGTAtaaagt
gi|117237                     : GGTCAA-T-TT-GCTCT-T------C--T--G--T-GAAGT-----CG-ATA-TA-TC-T-AT-AG--ATTGAC-A---TC-A---TGAA-AG-GG-CTAT-A-TTTGTAtaat
gi|117242                     : GGTCGA-T-AT-GCT-T-TT-----C--T--G--T-GAAGT-----CG-ATA-TT-TC-T-TT-GGG-AACGAC-C---TC-A---TGAA-AG-AG-CTAT-A-TTTGTAtaat
gi|117243                     : GGTCGA-T-AT-GCT-TGT------T--T--G--T-GAGGTAGATACATGTA-TA-TC-T-AT-GG--ATCGAC-C---TC-A---TGAA-AG-GG-CTAT-ATTTTGTAtaat
gi|117239                     : GGTTGA-C-AT-GCT-T-TA-----C--T--G--T--AAGT-----TG-ATA-TA-TC-T-AT-GG--ATCGACAT---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117233                     : GGTCGA-T-AT-GCT-T-TT-----C--T--G--T-AAAGT-----CA-ATA-TA-TC-T-AT-GG--ATTGA--C---TG-AT--TGAA-AG-GA-CTGC-A-TTTGTtaat
gi|117235                     : GGTTGA-T-AT-GCT-T--------C--T--G--T-GAAGT-----CG-ATA-TA-TC-T-AT-GG--ATTGA-------C-AGATTGAA-AG-GG-CTAC-A-TTTGT
gi|117244                     : GGTCGA-T----GCT-T-TT-----C--T--G--T-GAAGT-----CG-ATC-TA-TC-T-AT-GG--ATTGAC-CGA-CA-A---TGAA-AG-GGCCTATAA-TTTGTA
gi|117245                     : GGTCGA-T-AT-GCT-T-TT-----C--T--AGCT-GAAGT-----CG-A-A-TA-TC-T-AT-GG--AT-GAC-C---GA-T---TGAA-AG-GG-CTAT-A-ATTGT
gi|117246                     : GGTCGA-T-CT-GCT-T-T------T--T--T--TTGAAGT-----CG-ATA-TATTC-TCAT-GG--A-CGAC-CT--TC-A---TGAA-AGAAG-CTAT-A-TCT
gi|117247                     :  GTCGA-T-AT-GCT-T-T------C--TCTG--T-GAAGT-----CG-ATA-TA-TC-T-AT-GG--ATTGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117249                     :  GTCGA-T-AT-GCT-T-T------C--T--G--T-GAAGT-----CG-ATA-TA-TT-T-AT-GG--ATCGAC-C---TC-A---TGAA-AG-GG-TAAT-A-TTTGTAaa
gi|117248                     :  GTCGA-T-AT-GCT-T-TT-----C--T--G--T-GAAGT-----CG-ATA-TA-TC-T-AT-GG--ATCGAC-C---TC------GAA-AG-GG-CTAT-A--TTGTAtaat
gi|117250                     :  GTCGAAT-AT-GCT-T-TT-----C--T--G--TTGAAGT-----CG-ATA-TA-TG-T-AT-GG--ATTGAC-C---GA-T---TGAA-AG-GG-ATAC-A-TTTGT
gi|117251                     :   TCGA-T-AT-GCC-T-TTA----C--T--G--T-GAAGT-----TG-ATA-TA-TC-T-AT-GG--ATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117252                     :   TCGA-T-AT-GCT-T-TT-----C--T--G--T-AAGGT-----CG-ATA-TA-TC-T-AT-GG--AGCGAC-C---AA-C---TGAA-AG-GG-CTAT-A-TTTTTAtaat
gi|117253                     :   TCGA-T-AT-GCT-T-TT-----C--T--G--T-AAGGT-----CG-ATA-TA-TC-TTAT-GG--AGCGAC-C---AA-C---TGAA--G-GG-CTAT-A-TTT
gi|117254                     :    CGA-A-GT-GCT-T-TT-----C--T--G--T-GCAGT-----CG-ATA-TA-TC-T-AT-GG--ATTGAC-C---GA-T---TGAA-AG-GG-TTAC-A-TTTGT
gi|117255                     :    CGA-TTAT-GCT-T-TT-----C--T--G--T-GAAGT-----CG-ATA-TT-TC-T--T-TG--ATCGAT-C---GA-A---TGAA-AG-AG-A-AT-A-TTTGTA
gi|117257                     :     GA-T-ATTGCT-T-T------TCTT--G--T-GAAGT-----CG-ATATTA-TCTT-AT-GG--GTGGAC-C---TCAA---TGAACAG-GGCCTAT-A-TTTtaa
gi|117256                     :     GA-T-AT-GCT-T-T---------T--G--T-GAAGT-----TG-GTA--A-TC-TTAT-GG--ATGGAC-CGAGT------TGAA-AG-GG-CTAC-A-TTTGT
gi|117258                     :               T-T-T------C--T--G--T-GACGT-----CG-ATA-TT-TC-T-TTAGG--ATCGAC-C---GA-A---TGAA-AG-AG-CTAC-A-TTTAT





Alignments
lowQualScore                  :                                                                       1111111111                        
lowQualScore                  :       1 1  1     1 66666  1 22 1          666666  1  3 3  55        1 2222222222    1  1  3    1 1      
lowQualScore                  :       . .  .     . .....  . .. .          ......  .  . .  ..        . ..........    .  .  .    . .      
lowQualScore                  :       6 6  6     5 99999  5 11 5          000000  5  1 1  22        5 0000000000    5  5  1    5 5      
consensus                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
Reference ( family-697 )      : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117233                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-AAAGTCAATA------TA-TC-T-AT--GGATTGA--C---TG-AT--TGAA-AG-GA-CTGC-A-TTTGT
gi|117234                     : GGTCGA-T-AT-GCTTT-------CT-G--T-GAAGTCAATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117235                     : GGTTGA-T-AT-GCTT--------CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATTGA-------C-AGATTGAA-AG-GG-CTAC-A-TTTGT
gi|117236                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCAATA------AA-TC-T-AT--GAATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117237                     : GGTCAA-T-TT-GCTCT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--AGATTGAC-A---TC-A---TGAA-AG-GG-CTAT-A-TTTGTAtaat
gi|117238                     : GGTTGA-C-AT-GCTTT-A-----CT-G--T-GAAGTTGATA------TA-TC-T-AT--GGATCGAC-A---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117239                     : GGTTGA-C-AT-GCTTT-A-----CT-G--T--AAGTTGATA------TA-TC-T-AT--GGATCGACAT---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117240                     : GGTCGA-T-AT-GCTTT-TT----CT-G--T-GAAGTCGATA------TA-TC-T-ATGGGGATCAAC-C---TA-A---TGAA-AG-GG-CTAT-A-TTTGCAtaat
gi|117241                     : GGTCGA-T-AT-GCTTT-TACTTTCT-G--T-GAAGTCGTTA------TA-TC-T-AT--GGGTCGAC-C---CC-A---TGAA-AG-GG-CTAT-G-TTTGTAtaaagt
gi|117242                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TT-TC-T-TTG-GGAACGAC-C---TC-A---TGAA-AG-AG-CTAT-A-TTTGTAtaat
gi|117243                     : GGTCGA-T-AT-GCTTG-T-----TT-G--T-GAGGTAGATACATGTATA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-ATTTTGTAtaat
gi|117244                     : GGTCGA-T----GCTTT-T-----CT-G--T-GAAGTCGATC------TA-TC-T-AT--GGATTGAC-CGA-CA-A---TGAA-AG-GGCCTATAA-TTTGTAtaat
gi|117245                     : GGTCGA-T-AT-GCTTT-T-----CT-AGCT-GAAGTCGA-A------TA-TC-T-AT--GGAT-GAC-C---GA-T---TGAA-AG-GG-CTAT-A-ATTGT
gi|117246                     : GGTCGA-T-CT-GCTTT-T-----TT-T--T-GAAGTCGATA------TATTC-TCAT--GGA-CGAC-CT--TC-A---TGAA-AGAAG-CTAT-A-TCT
gi|117247                     :  GTCGA-T-AT-GCTTTCT-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATTGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117248                     :  GTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC------GAA-AG-GG-CTAT-A--TTGTAaa
gi|117249                     :  GTCGA-T-AT-GCTTT-------CT-G--T-GAAGTCGATA------TA-TT-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-TAAT-A-TTTGTA
gi|117250                     :  GTCGAAT-AT-GCTTT-T-----CT-G--TTGAAGTCGATA------TA-TG-T-AT--GGATTGAC-C---GA-T---TGAA-AG-GG-ATAC-A-TTTGTtaat
gi|117251                     :   TCGA-T-AT-GCCTT-TA----CT-G--T-GAAGTTGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117252                     :   TCGA-T-AT-GCTTT-T-----CT-G--T-AAGGTCGATA------TA-TC-T-AT--GGAGCGAC-C---AA-C---TGAA-AG-GG-CTAT-A-TTTTTAtaat
gi|117253                     :   TCGA-T-AT-GCTTT-T-----CT-G--T-AAGGTCGATA------TA-TCTT-AT--GGAGCGAC-C---AA-C---TG-A-AG-GG-CTAT-A-TTT
gi|117254                     :    CGA-A-GT-GCTTT-T-----CT-G--T-GCAGTCGATA------TA-TC-T-AT--GGATTGAC-C---GA-T---TGAA-AG-GG-TTAC-A-TTTGT
gi|117255                     :    CGA-TTAT-GCTTT-T-----CT-G--T-GAAGTCGATA------TT-TC-T--T--TGATCGAT-C---GA-A---TGAA-AG-AG-A-AT-A-TTTGTA
gi|117256                     :     GA-T-AT-GCTTT-T--------G--T-GAAGTTGGTA-------A-TC-TTAT--GGATGGAC-CGAGT------TGAA-AG-GG-CTAC-A-TTTGTtaa
gi|117257                     :     GA-T-ATTGCTTT-T-----CTTG--T-GAAGTCGATAT-----TA-TCTT-AT--GGGTGGAC-C---TCAA---TGAACAG-GGCCTAT-A-TTT
gi|117258                     :               TTT-T-----CT-G--T-GACGTCGATA------TT-TC-T-TTA-GGATCGAC-C---GA-A---TGAA-AG-AG-CTAC-A-TTTAT





Alignments
lowQualScore                  :                                                                       1111111111                        
lowQualScore                  :       1 1  1     1 66666  1 22 1          666666  1  3 3  55        1 2222222222    1  1  3    1 1      
lowQualScore                  :       . .  .     . .....  . .. .          ......  .  . .  ..        . ..........    .  .  .    . .      
lowQualScore                  :       6 6  6     5 99999  5 11 5          000000  5  1 1  22        5 0000000000    5  5  1    5 5      
consensus                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
Reference ( family-697 )      : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117233                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-AAAGTCAATA------TA-TC-T-AT--GGATTGA--C---TG-AT--TGAA-AG-GA-CTGC-A-TTTGT
gi|117234                     : GGTCGA-T-AT-GCTTT-------CT-G--T-GAAGTCAATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117235                     : GGTTGA-T-AT-GCTT--------CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATTGA-------C-AGATTGAA-AG-GG-CTAC-A-TTTGT
gi|117236                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCAATA------AA-TC-T-AT--GAATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117237                     : GGTCAA-T-TT-GCTCT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--AGATTGAC-A---TC-A---TGAA-AG-GG-CTAT-A-TTTGTAtaat
gi|117238                     : GGTTGA-C-AT-GCTTT-A-----CT-G--T-GAAGTTGATA------TA-TC-T-AT--GGATCGAC-A---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117239                     : GGTTGA-C-AT-GCTTT-A-----CT-G--T--AAGTTGATA------TA-TC-T-AT--GGATCGACAT---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117240                     : GGTCGA-T-AT-GCTTT-TT----CT-G--T-GAAGTCGATA------TA-TC-T-ATGGGGATCAAC-C---TA-A---TGAA-AG-GG-CTAT-A-TTTGCAtaat
gi|117241                     : GGTCGA-T-AT-GCTTT-TACTTTCT-G--T-GAAGTCGTTA------TA-TC-T-AT--GGGTCGAC-C---CC-A---TGAA-AG-GG-CTAT-G-TTTGTAtaaagt
gi|117242                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TT-TC-T-TTG-GGAACGAC-C---TC-A---TGAA-AG-AG-CTAT-A-TTTGTAtaat
gi|117243                     : GGTCGA-T-AT-GCTTG-T-----TT-G--T-GAGGTAGATACATGTATA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-ATTTTGTAtaat
gi|117244                     : GGTCGA-T----GCTTT-T-----CT-G--T-GAAGTCGATC------TA-TC-T-AT--GGATTGAC-CGA-CA-A---TGAA-AG-GGCCTATAA-TTTGTAtaat
gi|117245                     : GGTCGA-T-AT-GCTTT-T-----CT-AGCT-GAAGTCGA-A------TA-TC-T-AT--GGAT-GAC-C---GA-T---TGAA-AG-GG-CTAT-A-ATTGT
gi|117246                     : GGTCGA-T-CT-GCTTT-T-----TT-T--T-GAAGTCGATA------TATTC-TCAT--GGA-CGAC-CT--TC-A---TGAA-AGAAG-CTAT-A-TCT
gi|117247                     :  GTCGA-T-AT-GCTTTCT-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATTGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117248                     :  GTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC------GAA-AG-GG-CTAT-A--TTGTAaa
gi|117249                     :  GTCGA-T-AT-GCTTT-------CT-G--T-GAAGTCGATA------TA-TT-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-TAAT-A-TTTGTA
gi|117250                     :  GTCGAAT-AT-GCTTT-T-----CT-G--TTGAAGTCGATA------TA-TG-T-AT--GGATTGAC-C---GA-T---TGAA-AG-GG-ATAC-A-TTTGTtaat
gi|117251                     :   TCGA-T-AT-GCCTT-TA----CT-G--T-GAAGTTGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117252                     :   TCGA-T-AT-GCTTT-T-----CT-G--T-AAGGTCGATA------TA-TC-T-AT--GGAGCGAC-C---AA-C---TGAA-AG-GG-CTAT-A-TTTTTAtaat
gi|117253                     :   TCGA-T-AT-GCTTT-T-----CT-G--T-AAGGTCGATA------TA-TCTT-AT--GGAGCGAC-C---AA-C---TG-A-AG-GG-CTAT-A-TTT
gi|117254                     :    CGA-A-GT-GCTTT-T-----CT-G--T-GCAGTCGATA------TA-TC-T-AT--GGATTGAC-C---GA-T---TGAA-AG-GG-TTAC-A-TTTGT
gi|117255                     :    CGA-TTAT-GCTTT-T-----CT-G--T-GAAGTCGATA------TT-TC-T--T--TGATCGAT-C---GA-A---TGAA-AG-AG-A-AT-A-TTTGTA
gi|117256                     :     GA-T-AT-GCTTT-T--------G--T-GAAGTTGGTA-------A-TC-TTAT--GGATGGAC-CGAGT------TGAA-AG-GG-CTAC-A-TTTGTtaa
gi|117257                     :     GA-T-ATTGCTTT-T-----CTTG--T-GAAGTCGATAT-----TA-TCTT-AT--GGGTGGAC-C---TCAA---TGAACAG-GGCCTAT-A-TTT
gi|117258                     :               TTT-T-----CT-G--T-GACGTCGATA------TT-TC-T-TTA-GGATCGAC-C---GA-A---TGAA-AG-AG-CTAC-A-TTTAT


blockSeqs                     :       A T  T     C ACTTT  T GC T          CATGTA  T  T C  GG        A CAGAT         C  A  C    A T
blockSeqs                     :       . .  .     . T      . .  .          T       .  T T  G         . GACAA         .  .  C    . .
blockSeqs                     :       . .  .     . A      . .  .          .       .  . .  A         . TTCA          .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . GAGT          .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCAA          .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TAA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . CCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . GAT           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . GAT           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . TCA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . AAC           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . AAC           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . GAT           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . GAA           .  .  .    . .
blockSeqs                     :       . .  .     . .      . .  .          .       .  . .  .         . GAA           .  .  .    . .
blockSeqs                     :                  . .      . .  .          .       .  . .  .         . TC            .  .  .    . .


blockSeqCons                  :                                                                       TCA*******
originalCons                  : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
finalCons                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-CTCA-------TGAA-AG-GG-CTAT-A-TTTGTA





Alignments
lowQualScore                  :                                                                       1111111111                        
lowQualScore                  :       1 1  1     1 66666  1 22 1          666666  1  3 3  55        1 2222222222    1  1  3    1 1      
lowQualScore                  :       . .  .     . .....  . .. .          ......  .  . .  ..        . ..........    .  .  .    . .      
lowQualScore                  :       6 6  6     5 99999  5 11 5          000000  5  1 1  22        5 0000000000    5  5  1    5 5      
consensus                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
Reference ( family-697 )      : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117233                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-AAAGTCAATA------TA-TC-T-AT--GGATTGA--C---TG-AT--TGAA-AG-GA-CTGC-A-TTTGT
gi|117234                     : GGTCGA-T-AT-GCTTT-------CT-G--T-GAAGTCAATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117235                     : GGTTGA-T-AT-GCTT--------CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATTGA-------C-AGATTGAA-AG-GG-CTAC-A-TTTGT
gi|117236                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCAATA------AA-TC-T-AT--GAATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117237                     : GGTCAA-T-TT-GCTCT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--AGATTGAC-A---TC-A---TGAA-AG-GG-CTAT-A-TTTGTAtaat
gi|117238                     : GGTTGA-C-AT-GCTTT-A-----CT-G--T-GAAGTTGATA------TA-TC-T-AT--GGATCGAC-A---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117239                     : GGTTGA-C-AT-GCTTT-A-----CT-G--T--AAGTTGATA------TA-TC-T-AT--GGATCGACAT---TC-A---TGAA-AA-GG-CTAT-A-TTTGTAtaat
gi|117240                     : GGTCGA-T-AT-GCTTT-TT----CT-G--T-GAAGTCGATA------TA-TC-T-ATGGGGATCAAC-C---TA-A---TGAA-AG-GG-CTAT-A-TTTGCAtaat
gi|117241                     : GGTCGA-T-AT-GCTTT-TACTTTCT-G--T-GAAGTCGTTA------TA-TC-T-AT--GGGTCGAC-C---CC-A---TGAA-AG-GG-CTAT-G-TTTGTAtaaagt
gi|117242                     : GGTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TT-TC-T-TTG-GGAACGAC-C---TC-A---TGAA-AG-AG-CTAT-A-TTTGTAtaat
gi|117243                     : GGTCGA-T-AT-GCTTG-T-----TT-G--T-GAGGTAGATACATGTATA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-ATTTTGTAtaat
gi|117244                     : GGTCGA-T----GCTTT-T-----CT-G--T-GAAGTCGATC------TA-TC-T-AT--GGATTGAC-CGA-CA-A---TGAA-AG-GGCCTATAA-TTTGTAtaat
gi|117245                     : GGTCGA-T-AT-GCTTT-T-----CT-AGCT-GAAGTCGA-A------TA-TC-T-AT--GGAT-GAC-C---GA-T---TGAA-AG-GG-CTAT-A-ATTGT
gi|117246                     : GGTCGA-T-CT-GCTTT-T-----TT-T--T-GAAGTCGATA------TATTC-TCAT--GGA-CGAC-CT--TC-A---TGAA-AGAAG-CTAT-A-TCT
gi|117247                     :  GTCGA-T-AT-GCTTTCT-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATTGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117248                     :  GTCGA-T-AT-GCTTT-T-----CT-G--T-GAAGTCGATA------TA-TC-T-AT--GGATCGAC-C---TC------GAA-AG-GG-CTAT-A--TTGTAaa
gi|117249                     :  GTCGA-T-AT-GCTTT-------CT-G--T-GAAGTCGATA------TA-TT-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-TAAT-A-TTTGTA
gi|117250                     :  GTCGAAT-AT-GCTTT-T-----CT-G--TTGAAGTCGATA------TA-TG-T-AT--GGATTGAC-C---GA-T---TGAA-AG-GG-ATAC-A-TTTGTtaat
gi|117251                     :   TCGA-T-AT-GCCTT-TA----CT-G--T-GAAGTTGATA------TA-TC-T-AT--GGATCGAC-C---TC-A---TGAA-AG-GG-CTAT-A-TTTGTA
gi|117252                     :   TCGA-T-AT-GCTTT-T-----CT-G--T-AAGGTCGATA------TA-TC-T-AT--GGAGCGAC-C---AA-C---TGAA-AG-GG-CTAT-A-TTTTTAtaat
gi|117253                     :   TCGA-T-AT-GCTTT-T-----CT-G--T-AAGGTCGATA------TA-TCTT-AT--GGAGCGAC-C---AA-C---TG-A-AG-GG-CTAT-A-TTT
gi|117254                     :    CGA-A-GT-GCTTT-T-----CT-G--T-GCAGTCGATA------TA-TC-T-AT--GGATTGAC-C---GA-T---TGAA-AG-GG-TTAC-A-TTTGT
gi|117255                     :    CGA-TTAT-GCTTT-T-----CT-G--T-GAAGTCGATA------TT-TC-T--T--TGATCGAT-C---GA-A---TGAA-AG-AG-A-AT-A-TTTGTA
gi|117256                     :     GA-T-AT-GCTTT-T--------G--T-GAAGTTGGTA-------A-TC-TTAT--GGATGGAC-CGAGT------TGAA-AG-GG-CTAC-A-TTTGTtaa
gi|117257                     :     GA-T-ATTGCTTT-T-----CTTG--T-GAAGTCGATAT-----TA-TCTT-AT--GGGTGGAC-C---TCAA---TGAACAG-GGCCTAT-A-TTT
gi|117258                     :               TTT-T-----CT-G--T-GACGTCGATA------TT-TC-T-TTA-GGATCGAC-C---GA-A---TGAA-AG-AG-CTAC-A-TTTAT