lowQualScore : 1 1 1 3 1 1 22 444 1 1 22 1 222 1 1
lowQualScore : . . . . . . .. ... . . .. . ... . .
lowQualScore : 5 5 5 1 5 5 11 222 5 5 11 5 777 5 7
consensus : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-AAAATTT
Reference ( gi|29983 ) : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-AGAATTT
gi|29985 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-AGAATTT
gi|29987 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAT--TT-T-ATCC--G-TT---G-AAT-AGAATTT
gi|29984 : TTTATTA-CATTTTC-AG-CAGTGAC-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-AAAATTT
gi|29989 : TTTAATA-CATTTTC-AG-CAGTGAA-G-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-AGAATT
gi|29986 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-AAAATTT
gi|29988 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-CAAATT
gi|29991 : TTTATTA-CATTTTC-AG-GAGTGAA-A-TA-TTG--AGG--TT-T-ATCC--G-TT---A-AAT-AAAATTT
gi|29992 : TTTATTA-CATTTTC-AG-CAGTGAA-ATTA-TTG---AA--TT-T-ATCC--G-TT---A-AAT-AAAATTT
gi|29993 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-CCCC--G-TT---G-AA
gi|29990 : TTTATTA-CATTTTC-AG-CAGTGAA-G-TA-TTGACAAG--TT-T-AT-C--G-TT---G-AAT-AGAATTT
gi|29997 : TTTATTA-CATTT-C-AG-CAGTGAA---TA-TTG--AAA--TT-T-ATCC--G-TT-----AAT-AGAA
gi|29995 : TTTATTA-CATTTTC-AG-CAGTGAA-----------AAA--TT-T-ATCC--GTTT---G-AAT-AGAATTTatct
gi|29994 : TTTATTA-CATTTTC-AA-CAGTAAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---G-AAT-AAAAT
gi|30002 : TTTATTA-CATTTTC-AG-CAG-GAA-A-TA--TG--AAT--TT-C-ATCC--G-TTGAAG-AAT-AGAAT
gi|29996 : TTTATTA-CATTTTCTAG-CAGTGAA-A-TA-TTG--AAA--TTCT-ATTCCAG-TT---GCAGT-AAAATTT
gi|30000 : TTTATTA-CATTTTC-AA-CAGTGAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---G-AA
gi|29999 : TTTATTA-TATTTTC-AA-GAGTGAA-A-TA-TTG--TAT--TT-T-ATCC--A-TT---G-AAT-AAAAATTataa
gi|29998 : TTTATTA-CATTTTT-AA-CAGTGAA-A-TA-TTG--TAT--TT-T-ATAC--A-TT---G-AAT-AAAAATT
gi|30001 : TTTATTA-CATTTTC-AG--AGTGAATA-GA-TTG--AA---TT-T-ATCC--G-TT---G-AAT--GAA
gi|30003 : TTTATTA-CATTTTC-AA-CAATGAA-G-TA-CTG--TAT--TT-T-ATCT--A-TT---G-AAT-AAAAATT
gi|30004 : TTTATTA-CATTTTC-AA-TAGTAAA-A-TA-CTG--TAT--TT-A-ATCC--A-TT---G-AAT-AAAA
gi|30005 : TTACCA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--AT-T-ATCC--G-AT---G-AAT-AGAATTT
gi|30006 : TTATTA-CATTTTT-AGGCAGTGAATA-TA-TTG--AAAATTT-T-ATCC--G-TT---G-AGT-AAAATTT
gi|30007 : TATAG-CATTTTC-AG-CAGTGAA-A-TATTTG--AAA--TT-TAATCC--G-TT---G-AAT-AG-ATTT
gi|30008 : ATTA-CATTTTC-AT-CTATGAA-A-TG-TTG--AAA--TT-T-ATCC--A-CT---A-AATAAAAATTT
gi|30009 : TTAGCATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-AAAATTT
Alignments
lowQualScore : 1 1 1 3 1 1 22 333 1 1 22 1 222 3 1 1
lowQualScore : . . . . . . .. ... . . .. . ... . . .
lowQualScore : 5 5 5 0 5 5 00 777 5 5 00 5 666 0 5 5
consensus : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
Reference ( family-687 ) : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
gi|29983 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-GAATTT
gi|29984 : TTTATTA-CATTTTC-AG-CAGTGAC-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
gi|29985 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-GAATTT
gi|29986 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-AAATTT
gi|29987 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAT--TT-T-ATCC--G-TT---G-AAT-A-GAATTT
gi|29988 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-C-AAATT
gi|29989 : TTTAATA-CATTTTC-AG-CAGTGAA-G-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-GAATT
gi|29990 : TTTATTA-CATTTTC-AG-CAGTGAA-G-TA-TTGACAAG--TT-T-AT-C--G-TT---G-AAT-A-GAATTT
gi|29991 : TTTATTA-CATTTTC-AG-GAGTGAA-A-TA-TTG--AGG--TT-T-ATCC--G-TT---A-AAT-A-AAATTT
gi|29992 : TTTATTA-CATTTTC-AG-CAGTGAA-ATTA-TTG---AA--TT-T-ATCC--G-TT---A-AAT-A-AAATTT
gi|29993 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-CCCC--G-TT---G-AA
gi|29994 : TTTATTA-CATTTTC-AA-CAGTAAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---G-AAT-A-AAAT
gi|29995 : TTTATTA-CATTTTC-AG-CAGTGAA-----------AAA--TT-T-ATCC--GTTT---G-AAT-A-GAATTT
gi|29996 : TTTATTA-CATTTTCTAG-CAGTGAA-A-TA-TTG--AAA--TTCT-ATTCCAG-TT---GCAGT-A-AAATTT
gi|29997 : TTTATTA-CATTT-C-AG-CAGTGAA---TA-TTG--AAA--TT-T-ATCC--G-TT-----AAT-AGAAATCT
gi|29998 : TTTATTA-CATTTTT-AA-CAGTGAA-A-TA-TTG--TAT--TT-T-ATAC--A-TT---G-AAT-A-AAAATT
gi|29999 : TTTATTA-TATTTTC-AA-GAGTGAA-A-TA-TTG--TAT--TT-T-ATCC--A-TT---G-AAT-A-AAAATT
gi|30000 : TTTATTA-CATTTTC-AA-CAGTGAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---GAAAT-A-
gi|30001 : TTTATTA-CATTTTC-AG--AGTGAATA-GA-TTG--AA---TT-T-ATCC--G-TT---G-AAT-G-AA
gi|30002 : TTTATTA-CATTTTC-AG-CAG-GAA-A-TA--TG--AAT--TT-C-ATCC--G-TTGAAG-AAT-A-GAAT
gi|30003 : TTTATTA-CATTTTC-AA-CAATGAA-G-TA-CTG--TAT--TT-T-ATCT--A-TT---G-AAT-A-AAAATT
gi|30004 : TTTATTA-CATTTTC-AA-TAGTAAA-A-TA-CTG--TAT--TT-A-ATCC--A-TT---G-AAT-A-AAA
gi|30005 : TTACCA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--AT-T-ATCC--G-AT---G-AAT-A-GAATTT
gi|30006 : TTATTA-CATTTTT-AGGCAGTGAATA-TA-TTG--AAAATTT-T-ATCC--G-TT---G-AGT-A-AAATTT
gi|30007 : TATAG-CATTTTC-AG-CAGTGAA-A-TATTTG--AAA--TT-TAATCC--G-TT---G-AAT---AGATTT
gi|30008 : ATTA-CATTTTC-AT-CTATGAA-A-TG-TTG--AAA--TT-T-ATCC--A-CT---A-AATAA-AAATTT
gi|30009 : TTAGCATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-AAATTT
Alignments
lowQualScore : 1 1 1 3 1 1 22 333 1 1 22 1 222 3 1 1
lowQualScore : . . . . . . .. ... . . .. . ... . . .
lowQualScore : 5 5 5 0 5 5 00 777 5 5 00 5 666 0 5 5
consensus : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
Reference ( family-687 ) : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
gi|29983 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-GAATTT
gi|29984 : TTTATTA-CATTTTC-AG-CAGTGAC-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
gi|29985 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-GAATTT
gi|29986 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-AAATTT
gi|29987 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAT--TT-T-ATCC--G-TT---G-AAT-A-GAATTT
gi|29988 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-C-AAATT
gi|29989 : TTTAATA-CATTTTC-AG-CAGTGAA-G-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-GAATT
gi|29990 : TTTATTA-CATTTTC-AG-CAGTGAA-G-TA-TTGACAAG--TT-T-AT-C--G-TT---G-AAT-A-GAATTT
gi|29991 : TTTATTA-CATTTTC-AG-GAGTGAA-A-TA-TTG--AGG--TT-T-ATCC--G-TT---A-AAT-A-AAATTT
gi|29992 : TTTATTA-CATTTTC-AG-CAGTGAA-ATTA-TTG---AA--TT-T-ATCC--G-TT---A-AAT-A-AAATTT
gi|29993 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-CCCC--G-TT---G-AA
gi|29994 : TTTATTA-CATTTTC-AA-CAGTAAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---G-AAT-A-AAAT
gi|29995 : TTTATTA-CATTTTC-AG-CAGTGAA-----------AAA--TT-T-ATCC--GTTT---G-AAT-A-GAATTT
gi|29996 : TTTATTA-CATTTTCTAG-CAGTGAA-A-TA-TTG--AAA--TTCT-ATTCCAG-TT---GCAGT-A-AAATTT
gi|29997 : TTTATTA-CATTT-C-AG-CAGTGAA---TA-TTG--AAA--TT-T-ATCC--G-TT-----AAT-AGAAATCT
gi|29998 : TTTATTA-CATTTTT-AA-CAGTGAA-A-TA-TTG--TAT--TT-T-ATAC--A-TT---G-AAT-A-AAAATT
gi|29999 : TTTATTA-TATTTTC-AA-GAGTGAA-A-TA-TTG--TAT--TT-T-ATCC--A-TT---G-AAT-A-AAAATT
gi|30000 : TTTATTA-CATTTTC-AA-CAGTGAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---GAAAT-A-
gi|30001 : TTTATTA-CATTTTC-AG--AGTGAATA-GA-TTG--AA---TT-T-ATCC--G-TT---G-AAT-G-AA
gi|30002 : TTTATTA-CATTTTC-AG-CAG-GAA-A-TA--TG--AAT--TT-C-ATCC--G-TTGAAG-AAT-A-GAAT
gi|30003 : TTTATTA-CATTTTC-AA-CAATGAA-G-TA-CTG--TAT--TT-T-ATCT--A-TT---G-AAT-A-AAAATT
gi|30004 : TTTATTA-CATTTTC-AA-TAGTAAA-A-TA-CTG--TAT--TT-A-ATCC--A-TT---G-AAT-A-AAA
gi|30005 : TTACCA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--AT-T-ATCC--G-AT---G-AAT-A-GAATTT
gi|30006 : TTATTA-CATTTTT-AGGCAGTGAATA-TA-TTG--AAAATTT-T-ATCC--G-TT---G-AGT-A-AAATTT
gi|30007 : TATAG-CATTTTC-AG-CAGTGAA-A-TATTTG--AAA--TT-TAATCC--G-TT---G-AAT---AGATTT
gi|30008 : ATTA-CATTTTC-AT-CTATGAA-A-TG-TTG--AAA--TT-T-ATCC--A-CT---A-AATAA-AAATTT
gi|30009 : TTAGCATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-AAATTT
blockSeqs : G T G T T T AC AAT C A CA T GAA C A G
blockSeqs : . . . T . . . A . . . . . A . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . T . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
finalCons : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
Alignments
lowQualScore : 1 1 1 3 1 1 22 333 1 1 22 1 222 3 1 1
lowQualScore : . . . . . . .. ... . . .. . ... . . .
lowQualScore : 5 5 5 0 5 5 00 777 5 5 00 5 666 0 5 5
consensus : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
Reference ( family-687 ) : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
gi|29983 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-GAATTT
gi|29984 : TTTATTA-CATTTTC-AG-CAGTGAC-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-AAATTT
gi|29985 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-GAATTT
gi|29986 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-AAATTT
gi|29987 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAT--TT-T-ATCC--G-TT---G-AAT-A-GAATTT
gi|29988 : TTTATTA-CATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-C-AAATT
gi|29989 : TTTAATA-CATTTTC-AG-CAGTGAA-G-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AAT-A-GAATT
gi|29990 : TTTATTA-CATTTTC-AG-CAGTGAA-G-TA-TTGACAAG--TT-T-AT-C--G-TT---G-AAT-A-GAATTT
gi|29991 : TTTATTA-CATTTTC-AG-GAGTGAA-A-TA-TTG--AGG--TT-T-ATCC--G-TT---A-AAT-A-AAATTT
gi|29992 : TTTATTA-CATTTTC-AG-CAGTGAA-ATTA-TTG---AA--TT-T-ATCC--G-TT---A-AAT-A-AAATTT
gi|29993 : TTTATTA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-CCCC--G-TT---G-AA
gi|29994 : TTTATTA-CATTTTC-AA-CAGTAAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---G-AAT-A-AAAT
gi|29995 : TTTATTA-CATTTTC-AG-CAGTGAA-----------AAA--TT-T-ATCC--GTTT---G-AAT-A-GAATTT
gi|29996 : TTTATTA-CATTTTCTAG-CAGTGAA-A-TA-TTG--AAA--TTCT-ATTCCAG-TT---GCAGT-A-AAATTT
gi|29997 : TTTATTA-CATTT-C-AG-CAGTGAA---TA-TTG--AAA--TT-T-ATCC--G-TT-----AAT-AGAAATCT
gi|29998 : TTTATTA-CATTTTT-AA-CAGTGAA-A-TA-TTG--TAT--TT-T-ATAC--A-TT---G-AAT-A-AAAATT
gi|29999 : TTTATTA-TATTTTC-AA-GAGTGAA-A-TA-TTG--TAT--TT-T-ATCC--A-TT---G-AAT-A-AAAATT
gi|30000 : TTTATTA-CATTTTC-AA-CAGTGAA-A-TA-CTG--TAT--TT-T-ATCC--A-TT---GAAAT-A-
gi|30001 : TTTATTA-CATTTTC-AG--AGTGAATA-GA-TTG--AA---TT-T-ATCC--G-TT---G-AAT-G-AA
gi|30002 : TTTATTA-CATTTTC-AG-CAG-GAA-A-TA--TG--AAT--TT-C-ATCC--G-TTGAAG-AAT-A-GAAT
gi|30003 : TTTATTA-CATTTTC-AA-CAATGAA-G-TA-CTG--TAT--TT-T-ATCT--A-TT---G-AAT-A-AAAATT
gi|30004 : TTTATTA-CATTTTC-AA-TAGTAAA-A-TA-CTG--TAT--TT-A-ATCC--A-TT---G-AAT-A-AAA
gi|30005 : TTACCA-CATTTTC-AG-CAGTGAA-A-TA-TTG--AAA--AT-T-ATCC--G-AT---G-AAT-A-GAATTT
gi|30006 : TTATTA-CATTTTT-AGGCAGTGAATA-TA-TTG--AAAATTT-T-ATCC--G-TT---G-AGT-A-AAATTT
gi|30007 : TATAG-CATTTTC-AG-CAGTGAA-A-TATTTG--AAA--TT-TAATCC--G-TT---G-AAT---AGATTT
gi|30008 : ATTA-CATTTTC-AT-CTATGAA-A-TG-TTG--AAA--TT-T-ATCC--A-CT---A-AATAA-AAATTT
gi|30009 : TTAGCATTTTT-AG-CAGTGAA-A-TA-TTG--AAA--TT-T-ATCC--G-TT---G-AGT-A-AAATTT