lowQualScore                  :                          1                                1                                                     
lowQualScore                  :    4     4   1    1 1    3 222   1 1 222 1       77777 22 0 1  7   1 1 1   222    1 1 666666  55555 1           
lowQualScore                  :    .     .   .    . .    . ...   . . ... .       ..... .. . .  .   . . .   ...    . . ......  ..... .           
lowQualScore                  :    0     0   9    8 8    5 777   5 5 777 5       11111 11 8 5  7   5 5 5   777    5 5 555555  66666 6           
consensus                     : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
Reference ( gi|32223 )        : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32222                      : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32224                      : ACAAAACTT-CCG-GTCA-A-GAAAAC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32225                      : ACAAAACTTTCCG-GTCA-A-GAAAGT-------------T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32227                      : ACTAAACTT-TCG-GTCA-A-GA--GC---GAA-A-G---T-GAACCAC-C---A--ATT-TT-CAT-T-A-CCG---AG-A-A-C------TC-----T-TATTCATTCTT
gi|32226                      : ACAAAACTTTCCG-GTCA-A-GAAA-----------G---T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAAGA-C------TCA----T-TATTCATTCTT
gi|32228                      :  CATAACTT-CCA-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--ATT-TT-CAT-T-A-CTG---AGAA-A-C------TC-----T-TATTTACTTTT
gi|32229                      :  CATAACTT-CTG-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--GTT-TT-CAT-T-A-CCG---AAAA-A-C------TC-----T-TATTTATCTTT
gi|32230                      :  CAAAACTT-CCG-GTCACA-GAAAGCTGTGAA-A-G---TTGAAACAC-T---A--A-TCTT-CAT-T-A-CCG---AGAA-A-CCT----TT-----T-TATTCCTTCTT
gi|32231                      :  CATAACTT-CCA-GTCG-A--AAAGC---AAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCA---AGAA-A-C------TC-----T-TA
gi|32232                      :  CATAACTT-CGG-GTCA-A-GAA--C-------------C-GAAACAC-C---A--T-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTTTT
gi|32233                      :  CATAACTT-CCG-ATCA-A-GAAA-C---GAACACG---T-GAAACACTC---A--T-T-TT-AAT-T-A-CAGTGGAGAA-A-C------TC-----T-TATTTACTTTT
gi|32234                      :  CATAACTT-CCT-GTGA-A-GAAA-C---AAA-A-G---T-GAAACTT-G---A--T-T-TT-TAT-T-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32235                      :  CATAACTT-CTT-GTCA-A-GAAA-C---GAA-A-G---T-GAGACTT-G---ATTA-T-TT-TAT-C-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32236                      :  CATAACTT-CCG-GTCA-A-GTAA-C---GTA-A-G---C-AAAACACTT---A--T-T-TT-CAT-T-A-CTG---AGAA-A-C------TA-----T-AATT
gi|32237                      :   AAAACTT-CCG-GTCA-A-GAAAGC---GTA-A-GAGAT-GAAACAC-C---A--ATT-TT-CAT-T-A-CCG---AGAA-A-CTCTAGATC-----T-TATTCATTCTT
gi|32238                      :   AAACCTT-CCC-GTCA-ATGAAAAC---GAA-A-G---T-GAAACGC-CCTCA--A-T-TT-CAT-T-A-CCA---AGAA-AGT------TC-----T-TA
gi|32239                      :     AACTT-CTG-GTCA-A-GAAA-C---GAA-A-G---T-GAAGCAT-C---A--ATT-TT-CAT-T-A-CCA---AGAA-T-C------TC-----T-TTTTTATTTTT
gi|32240                      :     AACTT-CCG-GTCA---GAA--T---GAA-A-G---C-GAA---C-T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TT-----TGTATT-ATTTTT
gi|32241                      :      ACTT-CCAAGTCA-A-GAAAAC---AAA-A-G---T-GAAACAC-T---A--ATT-TT-TAT-T-AGCCG---AGAA-A-C------T
gi|32242                      :        TT-TTG-GTCG-A-GAA-GC---GAA-A-G---T-GAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTTT
gi|32243                      :              -GTCG-A-GAGA-C---GAA-A-G---T-TAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TG-----T-TATT
gi|32244                      :                 CA-A-GAAA-C---GAA-A-G---C-GAAAC---T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TC-----T-TGTTTATTTTT
gi|32245                      :                        AAAC---AAA-T-G---T-GAAGCAT-G---G--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32247                      :                        AAAC---GAA-A-G---T-TAAGCATGC---A--T-T-TT-CAT-T-A-CCA---AGTA-A-C------TC-----T-TATTTATTCTT
gi|32246                      :                        AAAC---AAA-A-G---T-GAAACAT-G---G--ATT-TT-CAT-TAA-CCA---AGAA-A-C------TCTTAAGT-TATTCATTCTT
gi|32248                      :                         AAC---GAA-A-G---T-TAAGCAT-G---G--A-T-TT-TCTAT-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT





Alignments
lowQualScore                  :                          1                                1                                                     
lowQualScore                  :    1     3   1    1 1    2 222   1 1 222 1       66666 22 0 1  7   1 1 1   222    1 1 666666  55555 1           
lowQualScore                  :    .     .   .    . .    . ...   . . ... .       ..... .. . .  .   . . .   ...    . . ......  ..... .           
lowQualScore                  :    0     8   8    7 7    7 666   5 5 666 5       55555 00 4 5  4   5 5 5   666    5 5 333333  44444 5           
consensus                     : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
Reference ( family-681 )      : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32222                      : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32223                      : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32224                      : ACAAAACTT-CCG-GTCA-A-GAAAAC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32225                      : ACAAAACTTTCCG-GTCA-A-GAAAGT-------------T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32226                      : ACAAAACTTTCCG-GTCA-A-GAAA-----------G---T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAAGA-C------TCA----T-TATTCATTCTT
gi|32227                      : ACTAAACTT-TCG-GTCA-A-GA--GC---GAA-A-G---T-GAACCAC-C---A--ATT-TT-CAT-T-A-CCG---AG-A-A-C------TC-----T-TATTCATTCTT
gi|32228                      :  CATAACTT-CCA-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--ATT-TT-CAT-T-A-CTG---AGAA-A-C------TC-----T-TATTTACTTTT
gi|32229                      :  CATAACTT-CTG-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--GTT-TT-CAT-T-A-CCG---AAAA-A-C------TC-----T-TATTTATCTTT
gi|32230                      :  CAAAACTT-CCG-GTCACA-GAAAGCTGTGAA-A-G---TTGAAACAC-T---A--A-TCTT-CAT-T-A-CCG---AGAA-A-CCT----TT-----T-TATTCCTTCTT
gi|32231                      :  CATAACTT-CCA-GTCG-A--AAAGC---AAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCA---AGAA-A-C------TC-----T-TA
gi|32232                      :  CATAACTT-CGG-GTCA-A-GAA--C-------------C-GAAACAC-C---A--T-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTTTT
gi|32233                      :  CATAACTT-CCG-ATCA-A-GAAA-C---GAACACG---T-GAAACACTC---A--T-T-TT-AAT-T-A-CAGTGGAGAA-A-C------TC-----T-TATTTACTTTT
gi|32234                      :  CATAACTT-CCT-GTGA-A-GAAA-C---AAA-A-G---T-GAAACTT-G---A--T-T-TT-TAT-T-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32235                      :  CATAACTT-CTT-GTCA-A-GAAA-C---GAA-A-G---T-GAGACTT-G---ATTA-T-TT-TAT-C-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32236                      :  CATAACTT-CCG-GTCA-A-GTAA-C---GTA-A-G---C-AAAACACTT---A--T-T-TT-CAT-T-A-CTG---AGAA-A-C------TA-----T-AATT
gi|32237                      :   AAAACTT-CCG-GTCA-A-GAAAGC---GTA-A-GAGAT-GAAACAC-C---A--ATT-TT-CAT-T-A-CCG---AGAA-A-CTCTAGATC-----T-TATTCATTCTT
gi|32238                      :   AAACCTT-CCC-GTCA-ATGAAAAC---GAA-A-G---T-GAAACGC-CCTCA--A-T-TT-CAT-T-A-CCA---AGAA-AGT------TC-----T-TA
gi|32239                      :     AACTT-CTG-GTCA-A-GAAA-C---GAA-A-G---T-GAAGCAT-C---A--ATT-TT-CAT-T-A-CCA---AGAA-T-C------TC-----T-TTTTTATTTTT
gi|32240                      :     AACTT-CCG-GTCA---GAA--T---GAA-A-G---C-GAA---C-T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TT-----TGTATT-ATTTTT
gi|32241                      :      ACTT-CCAAGTCA-A-GAAAAC---AAA-A-G---T-GAAACAC-T---A--ATT-TT-TAT-T-AGCCG---AGAA-A-C------T
gi|32242                      :        TT-TTG-GTCG-A-GAA-GC---GAA-A-G---T-GAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTTT
gi|32243                      :              -GTCG-A-GAGA-C---GAA-A-G---T-TAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TG-----T-TATT
gi|32244                      :                 CA-A-GAAA-C---GAA-A-G---C-GAAAC---T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TC-----T-TGTTTATTTTT
gi|32245                      :                        AAAC---AAA-T-G---T-GAAGCAT-G---G--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32246                      :                        AAAC---AAA-A-G---T-GAAACAT-G---G--ATT-TT-CAT-TAA-CCA---AGAA-A-C------TCTTAAGT-TATTCATTCTT
gi|32247                      :                        AAAC---GAA-A-G---T-TAAGCATGC---A--T-T-TT-CAT-T-A-CCA---AGTA-A-C------TC-----T-TATTTATTCTT
gi|32248                      :                         AAC---GAA-A-G---T-TAAGCAT-G---G--A-T-TT-TCTAT-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT





Alignments
lowQualScore                  :                          1                                1                                                     
lowQualScore                  :    1     3   1    1 1    2 222   1 1 222 1       66666 22 0 1  7   1 1 1   222    1 1 666666  55555 1           
lowQualScore                  :    .     .   .    . .    . ...   . . ... .       ..... .. . .  .   . . .   ...    . . ......  ..... .           
lowQualScore                  :    0     8   8    7 7    7 666   5 5 666 5       55555 00 4 5  4   5 5 5   666    5 5 333333  44444 5           
consensus                     : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
Reference ( family-681 )      : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32222                      : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32223                      : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32224                      : ACAAAACTT-CCG-GTCA-A-GAAAAC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32225                      : ACAAAACTTTCCG-GTCA-A-GAAAGT-------------T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32226                      : ACAAAACTTTCCG-GTCA-A-GAAA-----------G---T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAAGA-C------TCA----T-TATTCATTCTT
gi|32227                      : ACTAAACTT-TCG-GTCA-A-GA--GC---GAA-A-G---T-GAACCAC-C---A--ATT-TT-CAT-T-A-CCG---AG-A-A-C------TC-----T-TATTCATTCTT
gi|32228                      :  CATAACTT-CCA-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--ATT-TT-CAT-T-A-CTG---AGAA-A-C------TC-----T-TATTTACTTTT
gi|32229                      :  CATAACTT-CTG-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--GTT-TT-CAT-T-A-CCG---AAAA-A-C------TC-----T-TATTTATCTTT
gi|32230                      :  CAAAACTT-CCG-GTCACA-GAAAGCTGTGAA-A-G---TTGAAACAC-T---A--A-TCTT-CAT-T-A-CCG---AGAA-A-CCT----TT-----T-TATTCCTTCTT
gi|32231                      :  CATAACTT-CCA-GTCG-A--AAAGC---AAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCA---AGAA-A-C------TC-----T-TA
gi|32232                      :  CATAACTT-CGG-GTCA-A-GAA--C-------------C-GAAACAC-C---A--T-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTTTT
gi|32233                      :  CATAACTT-CCG-ATCA-A-GAAA-C---GAACACG---T-GAAACACTC---A--T-T-TT-AAT-T-A-CAGTGGAGAA-A-C------TC-----T-TATTTACTTTT
gi|32234                      :  CATAACTT-CCT-GTGA-A-GAAA-C---AAA-A-G---T-GAAACTT-G---A--T-T-TT-TAT-T-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32235                      :  CATAACTT-CTT-GTCA-A-GAAA-C---GAA-A-G---T-GAGACTT-G---ATTA-T-TT-TAT-C-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32236                      :  CATAACTT-CCG-GTCA-A-GTAA-C---GTA-A-G---C-AAAACACTT---A--T-T-TT-CAT-T-A-CTG---AGAA-A-C------TA-----T-AATT
gi|32237                      :   AAAACTT-CCG-GTCA-A-GAAAGC---GTA-A-GAGAT-GAAACAC-C---A--ATT-TT-CAT-T-A-CCG---AGAA-A-CTCTAGATC-----T-TATTCATTCTT
gi|32238                      :   AAACCTT-CCC-GTCA-ATGAAAAC---GAA-A-G---T-GAAACGC-CCTCA--A-T-TT-CAT-T-A-CCA---AGAA-AGT------TC-----T-TA
gi|32239                      :     AACTT-CTG-GTCA-A-GAAA-C---GAA-A-G---T-GAAGCAT-C---A--ATT-TT-CAT-T-A-CCA---AGAA-T-C------TC-----T-TTTTTATTTTT
gi|32240                      :     AACTT-CCG-GTCA---GAA--T---GAA-A-G---C-GAA---C-T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TT-----TGTATT-ATTTTT
gi|32241                      :      ACTT-CCAAGTCA-A-GAAAAC---AAA-A-G---T-GAAACAC-T---A--ATT-TT-TAT-T-AGCCG---AGAA-A-C------T
gi|32242                      :        TT-TTG-GTCG-A-GAA-GC---GAA-A-G---T-GAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTTT
gi|32243                      :              -GTCG-A-GAGA-C---GAA-A-G---T-TAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TG-----T-TATT
gi|32244                      :                 CA-A-GAAA-C---GAA-A-G---C-GAAAC---T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TC-----T-TGTTTATTTTT
gi|32245                      :                        AAAC---AAA-T-G---T-GAAGCAT-G---G--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32246                      :                        AAAC---AAA-A-G---T-GAAACAT-G---G--ATT-TT-CAT-TAA-CCA---AGAA-A-C------TCTTAAGT-TATTCATTCTT
gi|32247                      :                        AAAC---GAA-A-G---T-TAAGCATGC---A--T-T-TT-CAT-T-A-CCA---AGTA-A-C------TC-----T-TATTTATTCTT
gi|32248                      :                         AAC---GAA-A-G---T-TAAGCAT-G---G--A-T-TT-TCTAT-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT


blockSeqs                     :    A     T   A    C T    G TGT   C C AGA T       CCTC  TT T C  T   A A G   TGG    G G TCTAGA  TTAAG G
blockSeqs                     :    A     T   .    . .    A .     . . .   .       TC    .  T .  T   . . .   .      . . CT      A     .
blockSeqs                     :    A     .   .    . .    G .     . . .   .       TT    .  T .  T   . . .   .      . . .       .     .
blockSeqs                     :    A     .   .    . .    G .     . . .   .       GC    .  T .  T   . . .   .      . . .       .     .
blockSeqs                     :    A     .   .    . .    C .     . . .   .       C     .  T .  T   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    C .     . . .   .       C     .  T .  .   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    G .     . . .   .       C     .  T .  .   . . .   .      . . .       .     .
blockSeqs                     :    A     .   .    . .    G .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    G .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    A .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    A .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    G .     . . .   .       T     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    A .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    T     .   .    . .    A .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    A     .   .    . .    A .     . . .   .       G     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :    A     .   .    . .    A .     . . .   .       G     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :          .   .    . .    . .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :          .   .    . .    . .     . . .   .       C     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :          .   .    . .    . .     . . .   .       T     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :          .   .    . .    . .     . . .   .       T     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :              .    . .    . .     . . .   .       G     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :                   . .    . .     . . .   .       G     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :                          . .     . . .   .       T     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :                          . .     . . .   .       G     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :                          . .     . . .   .       G     .  . .  .   . . .   .      . . .       .     .
blockSeqs                     :                          . .     . . .   .       G     .  . .  .   . . .   .      . . .              


blockSeqCons                  : 
originalCons                  : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
finalCons                     : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT





Alignments
lowQualScore                  :                          1                                1                                                     
lowQualScore                  :    1     3   1    1 1    2 222   1 1 222 1       66666 22 0 1  7   1 1 1   222    1 1 666666  55555 1           
lowQualScore                  :    .     .   .    . .    . ...   . . ... .       ..... .. . .  .   . . .   ...    . . ......  ..... .           
lowQualScore                  :    0     8   8    7 7    7 666   5 5 666 5       55555 00 4 5  4   5 5 5   666    5 5 333333  44444 5           
consensus                     : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
Reference ( family-681 )      : ACANAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32222                      : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32223                      : ACAAAACTT-CCG-GTCA-A-GAAAGC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32224                      : ACAAAACTT-CCG-GTCA-A-GAAAAC---GAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32225                      : ACAAAACTTTCCG-GTCA-A-GAAAGT-------------T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32226                      : ACAAAACTTTCCG-GTCA-A-GAAA-----------G---T-GAAACAC-C---A--A-C-TT-CAT-T-A-CCG---AGAAGA-C------TCA----T-TATTCATTCTT
gi|32227                      : ACTAAACTT-TCG-GTCA-A-GA--GC---GAA-A-G---T-GAACCAC-C---A--ATT-TT-CAT-T-A-CCG---AG-A-A-C------TC-----T-TATTCATTCTT
gi|32228                      :  CATAACTT-CCA-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--ATT-TT-CAT-T-A-CTG---AGAA-A-C------TC-----T-TATTTACTTTT
gi|32229                      :  CATAACTT-CTG-GTCA-A-GAAACC---GAA-A-G---T-GAAACAC-C---A--GTT-TT-CAT-T-A-CCG---AAAA-A-C------TC-----T-TATTTATCTTT
gi|32230                      :  CAAAACTT-CCG-GTCACA-GAAAGCTGTGAA-A-G---TTGAAACAC-T---A--A-TCTT-CAT-T-A-CCG---AGAA-A-CCT----TT-----T-TATTCCTTCTT
gi|32231                      :  CATAACTT-CCA-GTCG-A--AAAGC---AAA-A-G---T-GAAACAC-C---A--A-T-TT-CAT-T-A-CCA---AGAA-A-C------TC-----T-TA
gi|32232                      :  CATAACTT-CGG-GTCA-A-GAA--C-------------C-GAAACAC-C---A--T-T-TT-CAT-T-A-CCG---AGAA-A-C------TC-----T-TATTCATTTTT
gi|32233                      :  CATAACTT-CCG-ATCA-A-GAAA-C---GAACACG---T-GAAACACTC---A--T-T-TT-AAT-T-A-CAGTGGAGAA-A-C------TC-----T-TATTTACTTTT
gi|32234                      :  CATAACTT-CCT-GTGA-A-GAAA-C---AAA-A-G---T-GAAACTT-G---A--T-T-TT-TAT-T-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32235                      :  CATAACTT-CTT-GTCA-A-GAAA-C---GAA-A-G---T-GAGACTT-G---ATTA-T-TT-TAT-C-A-CCA---AGAA-A-C------TC-----T-TGTTTATCTTT
gi|32236                      :  CATAACTT-CCG-GTCA-A-GTAA-C---GTA-A-G---C-AAAACACTT---A--T-T-TT-CAT-T-A-CTG---AGAA-A-C------TA-----T-AATT
gi|32237                      :   AAAACTT-CCG-GTCA-A-GAAAGC---GTA-A-GAGAT-GAAACAC-C---A--ATT-TT-CAT-T-A-CCG---AGAA-A-CTCTAGATC-----T-TATTCATTCTT
gi|32238                      :   AAACCTT-CCC-GTCA-ATGAAAAC---GAA-A-G---T-GAAACGC-CCTCA--A-T-TT-CAT-T-A-CCA---AGAA-AGT------TC-----T-TA
gi|32239                      :     AACTT-CTG-GTCA-A-GAAA-C---GAA-A-G---T-GAAGCAT-C---A--ATT-TT-CAT-T-A-CCA---AGAA-T-C------TC-----T-TTTTTATTTTT
gi|32240                      :     AACTT-CCG-GTCA---GAA--T---GAA-A-G---C-GAA---C-T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TT-----TGTATT-ATTTTT
gi|32241                      :      ACTT-CCAAGTCA-A-GAAAAC---AAA-A-G---T-GAAACAC-T---A--ATT-TT-TAT-T-AGCCG---AGAA-A-C------T
gi|32242                      :        TT-TTG-GTCG-A-GAA-GC---GAA-A-G---T-GAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTTT
gi|32243                      :              -GTCG-A-GAGA-C---GAA-A-G---T-TAAACAT-G---A--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TG-----T-TATT
gi|32244                      :                 CA-A-GAAA-C---GAA-A-G---C-GAAAC---T---A--A-T-TTTCAT-T-A-CCG---AGAA-A-C------TC-----T-TGTTTATTTTT
gi|32245                      :                        AAAC---AAA-T-G---T-GAAGCAT-G---G--A-T-TTTCAT-T-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT
gi|32246                      :                        AAAC---AAA-A-G---T-GAAACAT-G---G--ATT-TT-CAT-TAA-CCA---AGAA-A-C------TCTTAAGT-TATTCATTCTT
gi|32247                      :                        AAAC---GAA-A-G---T-TAAGCATGC---A--T-T-TT-CAT-T-A-CCA---AGTA-A-C------TC-----T-TATTTATTCTT
gi|32248                      :                         AAC---GAA-A-G---T-TAAGCAT-G---G--A-T-TT-TCTAT-A-CCA---AGAA-A-C------TC-----T-TATTCATTCTT