lowQualScore : 1 1111111 111
lowQualScore : 3 0 66 1 55 9999999 1 1 1 3333 1 1 1 22 333 1 1 1 3 22 33 222 444444 1 1 999
lowQualScore : . . .. . .. ....... . . . .... . . . .. ... . . . . .. .. ... ...... . . ...
lowQualScore : 4 2 00 7 99 1111111 7 7 5 3333 5 5 5 66 555 5 5 5 1 11 88 444 888888 7 7 222
consensus : AAAAACACCG-NAT-TA--CA-----C-TG-TC-AAGAA-CT----TTCTC-GAGA-GCCC-G-CG-C-TTCTGTCA-T-TC-G-TC--AG--CC--A------A-GTG-TATCAA-GGTTTTTT
Reference ( gi|13438 ) : AAAACCACCG-GAT-TA--CA-----A-TG-TC-AAGAA-CT----TTCTC-GAGA-GCCT-G-CG-T-TTCTGTCA-T-TT-G-TC--AG--CA--A------A-GTG-TATCAA-AATTTTTT
gi|13437 : AAAAACACCG-GAT-TA--CA-----A-TG-TC-AAGAA-CT----TTCTC-AATG-GCCT-G-CA-T-TTCTGTCA-T-TT-G-TC--AG--CC--A------A-GTG-TATCAA-GATTTTTT
gi|13440 : AAAAACACTG-GAT-TA--CA-----A-TG-TC-AAGAA-CT----TTCTC-AAGG-GCCT-G-CA-T-TTCTGTCA-T-TT-G-TC--AG--CC--A------ATGT--TATAAA-GATTTTTT
gi|13439 : AAAAACACCT-AAT-TA--CA-----C-TG-TC-AAGAA-CT----TTCTC-AAGG-GTCT-G-CG-T-TTCTGTCA-T-TT-G-TC--AT--CC--A------A-GTG-TATCAAGAATTTTT
gi|13441 : AAAAACACGG-GAT-TA--CACTGC-A-TG-TC-CAGAA-CT----TGCTC-GAGA-GCCT-G-CG-C-TTCTGTCA-T-TT-G-TC--AG--CC--A------A-GTA-TATCAA-GATATTTT
gi|13443 : AAAACCACCA-TAT-TA--CATGTACACTG-TC-AGGGA-CT----TTCTC-GAGA-TCCC-G-CG-T-TTCTGTCA-G-TC-G-TC--AG--CC--A------A-GTG-TATTGA-GGTTTTTT
gi|13444 : AAAACT-CCG-TAT-TA--CA-----C-TG-TT-AAGAA-CT----TTCTC-GAGA-TTCC-G-TG-C-TTCTGTCA-T-TC-G-TC--AG--CA--A------A--TG-TTTCAA-GTTCTTTT
gi|13445 : aAGAAACAATG-GAT-TA--CA-----C-TG-TC-AAGAA-CT----TTCTC-GAGA-ACCT-G-CG-T-TTCTATCA-T-TT-A-TC--A
gi|13442 : AAAAACATAG-TAT-TA--TA-----C-TG-TC-AAGAA-CC----TTCTC-AAGA-ACCT-G-TG-C-TTTTGTCA-T-TC-G-TC--TG--CC--A------A-GTG-TATCAA-GTTCTCTT
gi|13449 : AAAA--ACCG-GAT-TAA-CA-----A-TG-TC-A-GAA-CT----TGCTC-AACT-GCCT-G-CA-T-TTCTGTCA-T-TT-GATC--AGCCCA--A------G-ATGCTATCAACGATTTTTT
gi|13446 : aAAAAACACTG-TAT-TA--CA-----C-TG-TT-AAGAA-CT----TTCTC-AAAA-GCCC-T-CA-C-TTCTGTCC-T-TC-A-TC--AG--CC--ACATACCG-GTA-TATCTA-AGTCTTTT
gi|13448 : AAAAACACCG-GAT-TA--CA-----C-TG-TC-AGGAA-ATGAAATTT----AGA-G----G--A-T-TTC-GTCAAT-TTAG-TCCCAC--CACCA------A-GTG-TATCAA-
gi|13450 : AAAACACCG-CAT-TA--CA-----C-TG-TC-CAGAA-TT----TTCTC-GAGA-GCCC-G--G-TCTTCTGTTA-T-TC-G-TC--AG--TC--A------A-ATG-TATCA
gi|13452 : AAAACATAG-TAT-TA--CA-----A-TG-TC-AAGAA-TA----TTCTT-GAGA-GCCT-G---------TGTCG-T-TT-G-TC--AG--CC--A------A-GTG-TATCAA-GGTTT
gi|13451 : AAAACATAG-TAT-TA--CA-----C-TG-TC-AAGAA-TC----TTCTC-GAGA-GCCT-G-TG-C-TTTTGTAG-C-TT-G-TT--AG--CC--A------A-GCA-TATTAA-GGTTTCTT
gi|13453 : AAAACACCGCGATGTA--CA-----C-TG-TCCAAGAA-CT----TTCTC-AGTC-GCCT-GGCG-C-TTCTGT-A-T-AT-T-TC---------------------G-TATCAA-GATCTTT
gi|13454 : AAACACTG-CAT-TATACA-----C-TG-TC-AAGAA-CT----TTCTC-TAGA-GCTT-G-CG-C-TTCTGCCA-T-TC-G-TC--AG--CC--A------A-GTG-CATCAA-GGTATTTT
gi|13456 : AT-TA--CA-----C-TG-TC-AAGAA-TC----TTCTC-GAGA-GCCT-G-TG-C-TTTTGTCC-T-TT-G-TC--AC--CC--A------A-GTG-TATCAA-AGTTTCTT
gi|13457 : AT-TA--CA-----C-TG-GC-AAAAA-CT----TTTTT-GAGA-GCCC-A-CG-C-CTCTGTCA-T-TC-G-TC--AG--TC--A------C-TTG-TGTAAA-AGTCTT
gi|13455 : AT-TA--CA-----ACTGATC-AAGGA--------TCTC-GAGAAGCCT-G-TAAC-TTTTGTCG-TGTT-G-TC--AG--CC--A------A-GTG-TATCAA-GGTTT
gi|13458 : aaacatggtAT-TAA-CA-----C-TG-TC-AAAAA-CT----GTCTA-GAGA-GCCT-G-CT-C-CTCTGGCA-T-TC-G-TC--AG--C
gi|13459 : AT-TA--CA-----C-AG-T--AAGAA-TC----TTCTC-CGGA-GCCT-G-TG-C-TTTTGTCG-T-TT-GTTC--AG--GA--C------A-GTG-TA-CAA-TGTTTTca
gi|13447 : T-TA--TA-----C-TG-TC-AAGAAACC----TTCTC-AAGA-GCCTTG-CG-T-TT-TGTCA-T-TT-G-TC--AGA-CA--A------A-TTG-TAT-AA-TATCTT
gi|13460 : aaaaacataat-TG--CA-----C-TG-TC-AATAA-CT----TTCTCTGGGA----T-G-AG-T-TTCTGTCA-T-TC-A-TC--AG--CC--A------A-GT
gi|13461 : -TA-TC-AAGAA-CT----TTCTC-GAGA-GCAC-G-TG-C-TTCTGTCA-T-TC-G-GC--AG--CT--A------A-GTA-TATCAA-
gi|13462 : acAA-CT----TTTTC-AAGG-GCCT-G-CG-T-TTCTGCCA-T-TT-G-TC--AG--CC--A------A-GTG-TATCAA-TATTTGTTggt
gi|13463 : A-CT----TTCTC-GAGA-GTCC-G-CG-A-TTCTGTCA-T-TC-G-CC--AG--CC--A------T-GGG-TATCA
Alignments
lowQualScore : 1 22 1 55 666666 5555 1 1 3333 1 1 555 11 1 22 1 0 1 22 22 1 444444 3 3 1 22
lowQualScore : . .. . .. ...... .... . . .... . . ... .. . .. . . . .. .. . ...... . . . ..
lowQualScore : 3 88 7 99 555555 2222 7 6 3333 5 5 111 99 5 11 5 9 5 11 11 6 666666 3 5 9 88
consensus : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
Reference ( family-680 ) : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
gi|13437 : AAAAACACCGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-AATG-GCC-T-GCA-TTTCTGT-CA--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-G--ATTTTTT
gi|13438 : AAAACCACCGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-GAGA-GCC-T-GCG-TTTCTGT-CA--T-TTG-TC--A--G-CAA------AG-TG-TATCAA-A--ATTTTTT
gi|13439 : AAAAACACCTA-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-AAGG-GTC-T-GCG-TTTCTGT-CA--T-TTG-TC--A--T-CCA------AG-TG-TATCAA-G--AATTTTT
gi|13440 : AAAAACACTGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-AAGG-GCC-T-GCA-TTTCTGT-CA--T-TTG-TC--A--G-CCA------A--TGTTATAAA-G--ATTTTTT
gi|13441 : AAAAACACGGG-AT-TA--CA------CTGCATGTC-CAG-AACT----TGCTC-GAGA-GCC-T-GCG-CTTCTGT-CA--T-TTG-TC--A--G-CCA------AG-TA-TATCAA-G--ATATTTT
gi|13442 : AAAAACATAGT-AT-TA--TA------CTG----TC-AAG-AACC----TTCTC-AAGA-ACC-T-GTG-CTTTTGT-CA--T-TCG-TC--T--G-CCA------AG-TG-TATCAA-G--TTCTCTT
gi|13443 : AAAACCACCAT-AT-TA--CATGTACACTG----TC-AGG-GACT----TTCTC-GAGA-TCC-C-GCG-TTTCTGT-CA--G-TCG-TC--A--G-CCA------AG-TG-TATTGA-G--GTTTTTT
gi|13444 : AAAAACTCCGT-AT-TA--CA------CTG----TT-AAG-AACT----TTCTC-GAGA-TTC-C-GTG-CTTCTGT-CA--T-TCG-TC--A--G--CA------AA-TG-TTTCAA-G--TTCTTTT
gi|13445 : AGAAACAATGG-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-ACC-T-GCG-TTTCTAT-CA--T-TTA-TC--A--
gi|13446 : AAAAACACTGT-AT-TA--CA------CTG----TT-AAG-AACT----TTCTC-AAAA-GCC-C-TCA-CTTCTGT-CC--T-TCA-TC--A--G-CCACATACCGG-TA-TATCTA-A--GTCTTTT
gi|13447 : AAAAACATAAT--T-TA--TA------CTG----TC-AAGAAACC----TTCTC-AAGA-GCCTT-GCG--TTTTGT-CA--T-TTG-TC--A--G-ACA------AATTG-TAT
gi|13448 : AAAAACACCGG-AT-TA--CA------CTG----TC-AGG-AAATGAAATTT----AGA-G-------G-ATTTCGT-CAATT-TAG-TCCCACCA-CCA------AG-TG-TATCAA-aatatctt
gi|13449 : AAAAAACCGG-AT-TAA-CA------ATG----TC-A-G-AACT----TGCTC-AACT-GCC-T-GCA-TTTCTGT-CA--T-TTGATC--A--GCCCA------AGATGCTATCAACG--ATTTTTT
gi|13450 : AAAACACCGC-AT-TA--CA------CTG----TC-CAG-AATT----TTCTC-GAGA-GCC-C-GGT-CTTCTGT-TA--T-TCG-TC--A--G-TCA------AA-TG-TATCA
gi|13451 : AAAACATAGT-AT-TA--CA------CTG----TC-AAG-AATC----TTCTC-GAGA-GCC-T-GTG-CTTTTGT-AG--C-TTG-TT--A--G-CCA------AG-CA-TATTAA-G--GTTTCTT
gi|13452 : AAAACATAGT-AT-TA--CA------ATG----TC-AAG-AATA----TTCTT-GAGA-GCC-T-G-------TGT-CG--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTT
gi|13453 : AAAACACCGCGATGTA--CA------CTG----TCCAAG-AACT----TTCTC-AGTC-GCC-TGGCG-CTTCTGTATA--T-T---TC--------------------G-TATCAA-G--ATCTTT
gi|13454 : AAACACTGC-AT-TATACA------CTG----TC-AAG-AACT----TTCTC-TAGA-GCT-T-GCG-CTTCTGC-CA--T-TCG-TC--A--G-CCA------AG-TG-CATCAA-G--GTATTTT
gi|13455 : AAACATGGT-AT-TA--CAA-----CTGA---TC-AAG-GA-------TCTC-GAGAAGCC-T-GTAACTTTTGT-CG--TGTTG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTT
gi|13456 : -AT-TA--CA------CTG----TC-AAG-AATC----TTCTC-GAGA-GCC-T-GTG-CTTTTGT-CC--T-TTG-TC--A--C-CCA------AG-TG-TATCAA-A--GTTTCTT
gi|13457 : -AT-TA--CA------CTG----GC-AAA-AACT----TTTTT-GAGA-GCC-C-ACG-CCTCTGT-CA--T-TCG-TC--A--G-TCA------CT-TG-TGTAAA-A--GTCTT
gi|13458 : -AT-TAA-CA------CTG----TC-AAA-AACT----GTCTA-GAGA-GCC-T-GCT-CCTCTGG-CA--T-TCG-TC--A--G-CCA------
gi|13460 : -TG--CA------CTG----TC-AAT-AACT----TTCTCTGGGA-----T-GAG-TTTCTGT-CA--T-TCA-TC--A--G-CCA------AG-T
gi|13461 : A------CTA----TC-AAG-AACT----TTCTC-GAGA-GCA-C-GTG-CTTCTGT-CA--T-TCG-GC--A--G-CTA------AG-TA-TATCAA-G--GT
gi|13462 : -AACT----TTTTC-AAGG-GCC-T-GCG-TTTCTGC-CA--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-T--ATTTGTT
gi|13463 : ACT----TTCTC-GAGA-GTC-C-GCG-ATTCTGT-CA--T-TCG-CC--A--G-CCA------TG-GG-TATCAT-GTTGTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13459 ): ATTACACAGTAAGAATCTTCTCCGGAGCCTGTGCTTTTGTCGTTTGTTCAGGACAGTGTACAATGTTTT
Alignments
lowQualScore : 1 22 1 55 666666 5555 1 1 3333 1 1 555 11 1 22 1 0 1 22 22 1 444444 3 3 1 22
lowQualScore : . .. . .. ...... .... . . .... . . ... .. . .. . . . .. .. . ...... . . . ..
lowQualScore : 3 88 7 99 555555 2222 7 6 3333 5 5 111 99 5 11 5 9 5 11 11 6 666666 3 5 9 88
consensus : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
Reference ( family-680 ) : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
gi|13437 : AAAAACACCGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-AATG-GCC-T-GCA-TTTCTGT-CA--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-G--ATTTTTT
gi|13438 : AAAACCACCGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-GAGA-GCC-T-GCG-TTTCTGT-CA--T-TTG-TC--A--G-CAA------AG-TG-TATCAA-A--ATTTTTT
gi|13439 : AAAAACACCTA-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-AAGG-GTC-T-GCG-TTTCTGT-CA--T-TTG-TC--A--T-CCA------AG-TG-TATCAA-G--AATTTTT
gi|13440 : AAAAACACTGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-AAGG-GCC-T-GCA-TTTCTGT-CA--T-TTG-TC--A--G-CCA------A--TGTTATAAA-G--ATTTTTT
gi|13441 : AAAAACACGGG-AT-TA--CA------CTGCATGTC-CAG-AACT----TGCTC-GAGA-GCC-T-GCG-CTTCTGT-CA--T-TTG-TC--A--G-CCA------AG-TA-TATCAA-G--ATATTTT
gi|13442 : AAAAACATAGT-AT-TA--TA------CTG----TC-AAG-AACC----TTCTC-AAGA-ACC-T-GTG-CTTTTGT-CA--T-TCG-TC--T--G-CCA------AG-TG-TATCAA-G--TTCTCTT
gi|13443 : AAAACCACCAT-AT-TA--CATGTACACTG----TC-AGG-GACT----TTCTC-GAGA-TCC-C-GCG-TTTCTGT-CA--G-TCG-TC--A--G-CCA------AG-TG-TATTGA-G--GTTTTTT
gi|13444 : AAAAACTCCGT-AT-TA--CA------CTG----TT-AAG-AACT----TTCTC-GAGA-TTC-C-GTG-CTTCTGT-CA--T-TCG-TC--A--G--CA------AA-TG-TTTCAA-G--TTCTTTT
gi|13445 : AGAAACAATGG-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-ACC-T-GCG-TTTCTAT-CA--T-TTA-TC--A--
gi|13446 : AAAAACACTGT-AT-TA--CA------CTG----TT-AAG-AACT----TTCTC-AAAA-GCC-C-TCA-CTTCTGT-CC--T-TCA-TC--A--G-CCACATACCGG-TA-TATCTA-A--GTCTTTT
gi|13447 : AAAAACATAAT--T-TA--TA------CTG----TC-AAGAAACC----TTCTC-AAGA-GCCTT-GCG--TTTTGT-CA--T-TTG-TC--A--G-ACA------AATTG-TAT
gi|13448 : AAAAACACCGG-AT-TA--CA------CTG----TC-AGG-AAATGAAATTT----AGA-G-------G-ATTTCGT-CAATT-TAG-TCCCACCA-CCA------AG-TG-TATCAA-aatatctt
gi|13449 : AAAAAACCGG-AT-TAA-CA------ATG----TC-A-G-AACT----TGCTC-AACT-GCC-T-GCA-TTTCTGT-CA--T-TTGATC--A--GCCCA------AGATGCTATCAACG--ATTTTTT
gi|13450 : AAAACACCGC-AT-TA--CA------CTG----TC-CAG-AATT----TTCTC-GAGA-GCC-C-GGT-CTTCTGT-TA--T-TCG-TC--A--G-TCA------AA-TG-TATCA
gi|13451 : AAAACATAGT-AT-TA--CA------CTG----TC-AAG-AATC----TTCTC-GAGA-GCC-T-GTG-CTTTTGT-AG--C-TTG-TT--A--G-CCA------AG-CA-TATTAA-G--GTTTCTT
gi|13452 : AAAACATAGT-AT-TA--CA------ATG----TC-AAG-AATA----TTCTT-GAGA-GCC-T-G-------TGT-CG--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTT
gi|13453 : AAAACACCGCGATGTA--CA------CTG----TCCAAG-AACT----TTCTC-AGTC-GCC-TGGCG-CTTCTGTATA--T-T---TC--------------------G-TATCAA-G--ATCTTT
gi|13454 : AAACACTGC-AT-TATACA------CTG----TC-AAG-AACT----TTCTC-TAGA-GCT-T-GCG-CTTCTGC-CA--T-TCG-TC--A--G-CCA------AG-TG-CATCAA-G--GTATTTT
gi|13455 : AAACATGGT-AT-TA--CAA-----CTGA---TC-AAG-GA-------TCTC-GAGAAGCC-T-GTAACTTTTGT-CG--TGTTG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTT
gi|13456 : -AT-TA--CA------CTG----TC-AAG-AATC----TTCTC-GAGA-GCC-T-GTG-CTTTTGT-CC--T-TTG-TC--A--C-CCA------AG-TG-TATCAA-A--GTTTCTT
gi|13457 : -AT-TA--CA------CTG----GC-AAA-AACT----TTTTT-GAGA-GCC-C-ACG-CCTCTGT-CA--T-TCG-TC--A--G-TCA------CT-TG-TGTAAA-A--GTCTT
gi|13458 : -AT-TAA-CA------CTG----TC-AAA-AACT----GTCTA-GAGA-GCC-T-GCT-CCTCTGG-CA--T-TCG-TC--A--G-CCA------
gi|13460 : -TG--CA------CTG----TC-AAT-AACT----TTCTCTGGGA-----T-GAG-TTTCTGT-CA--T-TCA-TC--A--G-CCA------AG-T
gi|13461 : A------CTA----TC-AAG-AACT----TTCTC-GAGA-GCA-C-GTG-CTTCTGT-CA--T-TCG-GC--A--G-CTA------AG-TA-TATCAA-G--GT
gi|13462 : -AACT----TTTTC-AAGG-GCC-T-GCG-TTTCTGC-CA--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-T--ATTTGTT
gi|13463 : ACT----TTCTC-GAGA-GTC-C-GCG-ATTCTGT-CA--T-TCG-CC--A--G-CCA------TG-GG-TATCAT-GTTGTTTT
blockSeqs : C CG G TA TGTACA CATG C A GAAA T A TT AC A AT G A CC CC C CATACC T T C TT
blockSeqs : C G . A A A . . . . . TG T . . . . . . . . A C . .
blockSeqs : T A . A . . . . . . . T T . . . . . . . . . . . .
blockSeqs : G G . . . . . . . . . T T . . . . . . . . . . . .
blockSeqs : A G . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : C T . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : C T . . . . . . . . . T T . . . . . . . . . . . .
blockSeqs : T T . . . . . . . . . C C . . . . . . . . . . . .
blockSeqs : T G . . . . . . . . . C T . . . . . . . . . . . .
blockSeqs : A T . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : C T . . . . . . . . . C A . . . . . . . . . . . .
blockSeqs : C G . . . . . . . . . T T . . . . . . . . . . . .
blockSeqs : C G . . . . . . . . . C C . . . . . . . . . . . .
blockSeqs : A C . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : A T . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : C T . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : T C . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : G T . . . . . . . . . T C . . . . . . . . . . . .
blockSeqs : . . . . . . . . . C C . . . . . . . . . . . .
blockSeqs : . . . . . . . . . T T . . . . . . . . . . .
blockSeqs : . . . . . . . . . T C . . . . . . . . . .
blockSeqs : . . . . . . . . . C T . . . . . . . . . .
blockSeqs : . . . . . . . T A . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqCons :
originalCons : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
finalCons : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13459 ): ATTACACAGTAAGAATCTTCTCCGGAGCCTGTGCTTTTGTCGTTTGTTCAGGACAGTGTACAATGTTTT
Alignments
lowQualScore : 1 22 1 55 666666 5555 1 1 3333 1 1 555 11 1 22 1 0 1 22 22 1 444444 3 3 1 22
lowQualScore : . .. . .. ...... .... . . .... . . ... .. . .. . . . .. .. . ...... . . . ..
lowQualScore : 3 88 7 99 555555 2222 7 6 3333 5 5 111 99 5 11 5 9 5 11 11 6 666666 3 5 9 88
consensus : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
Reference ( family-680 ) : AAAAACACCGN-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-GCC-C-GCG-CTTCTGT-CA--T-TCG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTTTTT
gi|13437 : AAAAACACCGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-AATG-GCC-T-GCA-TTTCTGT-CA--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-G--ATTTTTT
gi|13438 : AAAACCACCGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-GAGA-GCC-T-GCG-TTTCTGT-CA--T-TTG-TC--A--G-CAA------AG-TG-TATCAA-A--ATTTTTT
gi|13439 : AAAAACACCTA-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-AAGG-GTC-T-GCG-TTTCTGT-CA--T-TTG-TC--A--T-CCA------AG-TG-TATCAA-G--AATTTTT
gi|13440 : AAAAACACTGG-AT-TA--CA------ATG----TC-AAG-AACT----TTCTC-AAGG-GCC-T-GCA-TTTCTGT-CA--T-TTG-TC--A--G-CCA------A--TGTTATAAA-G--ATTTTTT
gi|13441 : AAAAACACGGG-AT-TA--CA------CTGCATGTC-CAG-AACT----TGCTC-GAGA-GCC-T-GCG-CTTCTGT-CA--T-TTG-TC--A--G-CCA------AG-TA-TATCAA-G--ATATTTT
gi|13442 : AAAAACATAGT-AT-TA--TA------CTG----TC-AAG-AACC----TTCTC-AAGA-ACC-T-GTG-CTTTTGT-CA--T-TCG-TC--T--G-CCA------AG-TG-TATCAA-G--TTCTCTT
gi|13443 : AAAACCACCAT-AT-TA--CATGTACACTG----TC-AGG-GACT----TTCTC-GAGA-TCC-C-GCG-TTTCTGT-CA--G-TCG-TC--A--G-CCA------AG-TG-TATTGA-G--GTTTTTT
gi|13444 : AAAAACTCCGT-AT-TA--CA------CTG----TT-AAG-AACT----TTCTC-GAGA-TTC-C-GTG-CTTCTGT-CA--T-TCG-TC--A--G--CA------AA-TG-TTTCAA-G--TTCTTTT
gi|13445 : AGAAACAATGG-AT-TA--CA------CTG----TC-AAG-AACT----TTCTC-GAGA-ACC-T-GCG-TTTCTAT-CA--T-TTA-TC--A--
gi|13446 : AAAAACACTGT-AT-TA--CA------CTG----TT-AAG-AACT----TTCTC-AAAA-GCC-C-TCA-CTTCTGT-CC--T-TCA-TC--A--G-CCACATACCGG-TA-TATCTA-A--GTCTTTT
gi|13447 : AAAAACATAAT--T-TA--TA------CTG----TC-AAGAAACC----TTCTC-AAGA-GCCTT-GCG--TTTTGT-CA--T-TTG-TC--A--G-ACA------AATTG-TAT
gi|13448 : AAAAACACCGG-AT-TA--CA------CTG----TC-AGG-AAATGAAATTT----AGA-G-------G-ATTTCGT-CAATT-TAG-TCCCACCA-CCA------AG-TG-TATCAA-aatatctt
gi|13449 : AAAAAACCGG-AT-TAA-CA------ATG----TC-A-G-AACT----TGCTC-AACT-GCC-T-GCA-TTTCTGT-CA--T-TTGATC--A--GCCCA------AGATGCTATCAACG--ATTTTTT
gi|13450 : AAAACACCGC-AT-TA--CA------CTG----TC-CAG-AATT----TTCTC-GAGA-GCC-C-GGT-CTTCTGT-TA--T-TCG-TC--A--G-TCA------AA-TG-TATCA
gi|13451 : AAAACATAGT-AT-TA--CA------CTG----TC-AAG-AATC----TTCTC-GAGA-GCC-T-GTG-CTTTTGT-AG--C-TTG-TT--A--G-CCA------AG-CA-TATTAA-G--GTTTCTT
gi|13452 : AAAACATAGT-AT-TA--CA------ATG----TC-AAG-AATA----TTCTT-GAGA-GCC-T-G-------TGT-CG--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTT
gi|13453 : AAAACACCGCGATGTA--CA------CTG----TCCAAG-AACT----TTCTC-AGTC-GCC-TGGCG-CTTCTGTATA--T-T---TC--------------------G-TATCAA-G--ATCTTT
gi|13454 : AAACACTGC-AT-TATACA------CTG----TC-AAG-AACT----TTCTC-TAGA-GCT-T-GCG-CTTCTGC-CA--T-TCG-TC--A--G-CCA------AG-TG-CATCAA-G--GTATTTT
gi|13455 : AAACATGGT-AT-TA--CAA-----CTGA---TC-AAG-GA-------TCTC-GAGAAGCC-T-GTAACTTTTGT-CG--TGTTG-TC--A--G-CCA------AG-TG-TATCAA-G--GTTT
gi|13456 : -AT-TA--CA------CTG----TC-AAG-AATC----TTCTC-GAGA-GCC-T-GTG-CTTTTGT-CC--T-TTG-TC--A--C-CCA------AG-TG-TATCAA-A--GTTTCTT
gi|13457 : -AT-TA--CA------CTG----GC-AAA-AACT----TTTTT-GAGA-GCC-C-ACG-CCTCTGT-CA--T-TCG-TC--A--G-TCA------CT-TG-TGTAAA-A--GTCTT
gi|13458 : -AT-TAA-CA------CTG----TC-AAA-AACT----GTCTA-GAGA-GCC-T-GCT-CCTCTGG-CA--T-TCG-TC--A--G-CCA------
gi|13460 : -TG--CA------CTG----TC-AAT-AACT----TTCTCTGGGA-----T-GAG-TTTCTGT-CA--T-TCA-TC--A--G-CCA------AG-T
gi|13461 : A------CTA----TC-AAG-AACT----TTCTC-GAGA-GCA-C-GTG-CTTCTGT-CA--T-TCG-GC--A--G-CTA------AG-TA-TATCAA-G--GT
gi|13462 : -AACT----TTTTC-AAGG-GCC-T-GCG-TTTCTGC-CA--T-TTG-TC--A--G-CCA------AG-TG-TATCAA-T--ATTTGTT
gi|13463 : ACT----TTCTC-GAGA-GTC-C-GCG-ATTCTGT-CA--T-TCG-CC--A--G-CCA------TG-GG-TATCAT-GTTGTTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13459 ): ATTACACAGTAAGAATCTTCTCCGGAGCCTGTGCTTTTGTCGTTTGTTCAGGACAGTGTACAATGTTTT