lowQualScore : 1 11111111
lowQualScore : 1 1 77 222 888 5 1 1 1 1 666 1 999999999999999 4 55 1 1 1 777 1 00000000 1 1 2 3333 1 1
lowQualScore : . . .. ... ... . . . . . ... . ............... . .. . . . ... . ........ . . . .... . .
lowQualScore : 7 7 33 222 222 7 6 6 6 6 000 5 222222222222222 2 11 5 5 9 444 5 55555555 5 5 4 4444 6 6
consensus : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-A-TTT--TCCCAATC-T--AG-----------ACGGA-CCCGGA-CC-CTGT-N-C-CAAAA---N--G-T-G-CAGC----G-AC-AGCCCTGAA
Reference ( gi|11036 ) : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-A-TTT--CCCCAATC-T--AG-----------ACGGG-CCCGGA-CC-CAGT-C-C-CAAAA---A--G-T-G-CAGC----G-AC-AGCCCTGAA
gi|11037 : TTTCCAA-T-TTGA--C-A-AAAAA---GATCGA-T-A-A-TTT--CCCCAATC-T--AG-----------ACGGG-CCCGGA--C-CAGT-C-C-CAAAA---A--G-T-G-CAGC----G-AC-AGCCCTGAA
gi|11038 : TTCCCAA-T-TTGA--C-C-AAAAAAA-GATCGA-T-A-A-TT---CCCCAATC-T--AG-----------ACGGG-CCCGGA-CC-CAGT-C-C-AAAAA---A--G-T-G-CAGC----G-AC-AGCCCTGAA
gi|11039 : TTCCCAA-T-TTGA--C-CAAAAAA---GATCGA-T-A-A--TT--CCCCAATC-T--AG-----------ACGGG-CCCGGA-CC-CAGT-C-CACAAAA---A--G-T-G-CAGC----A-GC-AGCCCTGAA
gi|11040 : TTCCCAA-T-TTGA--C-C-TAAAA---GATTGA-C-A-A-TTT--TCCCAATC-T--AG-----------ACGGA-CCCAGA-CT-CTGT-A-C-CATAA---A--G-G-G-CAGT----G-AC-AGCCCTG
gi|11042 : TTCCCAA-T-TTGA--C-G-AAAAA---GATCGA-T-A-ATTTT--CCTCAATC-T--AG-----------ACGGA-CCTGGA-CC-CAGT-TAC-CAAAA---A----T---CAGT----G-ACTAGCCCTG
gi|11034 : TTCCCAA-T-CTAA--A---AAAAA---AATCTA-A-A-A-TTT--TCCCAATC-T--AA-----------ATGGA-CCCGGA-CC-CTGT-A-C-CAAAA---C--A-T-G-CAGC----G-AC-AGCCCTG
gi|11044 : TTCCCAA-T-TTGA--C-C-CCAAA---ACCCGA-T-A-A-TTT--TTCCAATC-T--AA-----------AGGGA-CCCGGA-CC-CAGT-A-C-CAATA---T--A-T-G-TAGT----G-AC-AGCCCTG
gi|11043 : TTCACAA-T-TTGA--T-T-TAAAAT--GA-CGC-T-A-A-TTT--TCCCAATC-T--TG-----------AGGGA-CCCGGT-CC-CTGT-C-C-CAAAA---T--A-T-G-CTGC----G-AC-AGCCCTGAA
gi|11047 : TTCTCAAAT-TTGA--C-C-GAAAA---TATAGA-T-A-T-TTT--TCCTAATC-A--AG-----------ATGGA-ACTGGA-CG-TTGT-A-C-CAAAA---A--G-G-G-CAGT----G-AC-AGCCCT
gi|11045 : TTCCCAA-T-TTGA--T-T-CAAAA---TAACGT-T-A-A-TTT--TCCCATTC-T--CA-----------AGGGA-CCCAGC-CC-CTAT-C-C-CAAAA---T--A-T-G-CTGT----G-AC-AGCCCTGGA
gi|11050 : TTCCCAA-T-TTGA--C-C-AAAAAAAGAATCGATT-ATA-TTTA-TCCCAATCTT--AC-----------GCGGA-CCCAGACCC-CAGTCC-C-CAAAA---A--GCT-ATCGAC----GCAC-AGCCC
gi|11049 : TTCCCAA-T-TTGAT-T-C-AAATT---GA-CGT-T-A-A-TTT--TCCCAATC-T--CA-----------AGGGA-CCC-GA-CCACTGT-T-C-CACAA---T--A-T-G-CTGT----G-AC-AGCCCTG
gi|11041 : TTCATAA-T-TTGA--T-T-CAAAA---TAACGC-T-A---TTT--TCCCAATC-T----------------CAGGACCCGGT-CC-T-GT-C-C-CAAAA---T--A-T-G-CTGT----G-AC-AGCCCTGA
gi|11048 : TTCTCAA-T-TTGA--C-C-GAAAA---TATAGA-T---T-TTT--TCCTAATC-A--AG-----------ATGGA-ACTGGA-CG-TTGTAG-C-CAAAA---A--G-G-G---GT----G-AC-AGCCCT
gi|11035 : TTCCCAA-T-TTGAT-C-C-AAAAT---GA-CGC-T-A-A-TTT--TCCTAATC-T--CA-----------AGGGA-CCCAGT-TG-CTGT-C-T-GAAAAT--A--G---G-CTGT----G-TC-AGCCCTGAA
gi|11046 : TTCACAA-T-TTCA--A-T-GAAAAT--GATGCA---G-A-TTT--TCCCAATC-T--TA-----------AGGGA-CCTGGC-CC-CTAT-C-C-CAAAA---T--A-T-G-CTGT----G-AC-AGCCCTG
gi|11052 : TTCCCAA-T-TTGAT-T-C-AAAAT---GA-CGC-T-A-A-CTT--TCCCAATC-TCAAGGGAGTCGATGAAGGGA-CCCAGT-CC-CTGT-C-C-CAAAT---T--A-T-G-CTGT----G-AC-AGCCTTG
gi|11051 : TTCCCAA-T-TTAA--TTC-AAAAT---GA-CAC-C-A-A-TTT--CCC-AATC-T--CA-----------AGGGA-CCTGGT-TC-CTGC-C-C-CAAAATAGA--G-T-G-T-------G-AC-AGCCCTG
gi|11055 : TCCCAA-T-TTGA--C-C-AAAGA---GATAGC-T-A-A-TTT--TCAAAATC-T--TG-----------ACGAA-CCCGGA-CC-CTGT-A-C-CAAAA---A--G-G-G-AAGC----G-AC-AGCCCCGA
gi|11053 : TCCCCA-T-TTGA--C-C-AAAAT---GACCTA-T-A-A-CTT--TCTCAATC-T--AA-----------ATGGA-CCTCAA-CC-CTGT-A-A-CAAAA---C--A-T-G-CAGC----G-AC-AGCCCTG
gi|11054 : TCCCCA-T-TTGA--C-C-AAAAT---GACTGA-T-A-A-CTT--TCTCAATC-T--AA-----------ATGGA-CCTCAA-CC-CTGT-A-A-CAAAA---C--A-T-G-CAG
gi|11057 : CCCAA-TCTTGATTC-C-AAAAA----ATCGA-TTG-A-TTTTTCCCCAATT-T--AG-----------ATGGA-CCCGGA-CC-CTGT-A-C-CAAAA---A--G-CGG-CAGC----G-AC-AGCCCTGA
gi|11056 : CCCAA-T-TTGA--A---AAAAA---TATCGA-T-A-C-TTT--TCC-AATC-T--AA-----------ATGGA-CCTGGA-CC-CTGT-A-C-CAAAA---C--A-C-G-CAGC----G-AC-AGCCCTG
gi|11058 : AA-T-TTCA--C-C-AAAAA---AATCAA-T-A-A-TTT--TCCCAATA-T--AA-----------ATGGA-CCTGGA-CC-CTGT-G-C-AAAAA---A--A-T-G-TAATACTAG-AC-AGCCCTG
gi|11059 : -AAAAA---GCACGA-T------TT--TCCCAATC-T--AG-----------ATGGA-CCCGTA-CC-TTGT-A-C-CAAAA---AAGG-T---CAGT----G-AC-AGCCC
gi|11060 : CCCAATC-T--CA-----------AGGGA-CCTGGT-CC-CTGT-C-C-CAGAA---T--A-T-G-CTGT----G-AC-AGCCCTGGA
Alignments
lowQualScore : 1 1 77 111 777 5 1 1 1 1 22 1 1 888888888888888 55 1 1 1 44 1 555555 1 3 1 3333 1 1
lowQualScore : . . .. ... ... . . . . . .. . . ............... .. . . . .. . ...... . . . .... . .
lowQualScore : 6 6 00 777 999 2 5 5 5 5 00 5 5 222222222222222 11 5 5 5 00 5 888888 5 0 0 3333 5 5
consensus : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
Reference ( family-679 ) : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11034 : TTCCCAA-T-CTAA--A---AAAAA---AATCTA-A-A-ATTT-T--CC-CAATC-T--AA-----------AT-GGACCCGGACC-CT-G-T-AC-CAAAA---CA-T-G-CAGC----G-AC-AGCCCTG
gi|11035 : TTCCCAA-T-TTGAT-C-C-AAAAT---GA-CGC-T-A-ATTT-T--CC-TAATC-T--CA-----------AG-GGACCCAGTTG-CT-G-T-CT-GAAAA---TA-G-G-CTGT----G-TC-AGCCCTGAA
gi|11036 : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CC-CAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11037 : TTTCCAA-T-TTGA--C-A-AAAAA---GATCGA-T-A-ATTT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-A--G-T-CC-CAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11038 : TTCCCAA-T-TTGA--C-C-AAAAAAA-GATCGA-T-A-ATTC----CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CC-AAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11039 : TTCCCAA-T-TTGA--C-CAAAAAA---GATCGA-T-A-A-TT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CCACAAAA---AG-T-G-CAGC----A-GC-AGCCCTGAA
gi|11040 : TTCCCAA-T-TTGA--C-C-TAAAA---GATTGA-C-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCAGACT-CT-G-T-AC-CATAA---AG-G-G-CAGT----G-AC-AGCCCTG
gi|11041 : TTCATAA-T-TTGA--T-T-CAAAA---TAACGC-T-A--TTT-T--CC-CAATC-T----------------CAGGACCCGG-TC-CT-G-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTGA
gi|11042 : TTCCCAA-T-TTGA--C-G-AAAAA---GATCGA-T-A-ATTT-T--CCTCAATC-T--AG-----------AC-GGACCTGGACC-CA-GTT-AC-CAAAA---A--T---CAGT----G-ACTAGCCCTG
gi|11043 : TTCACAA-T-TTGA--T-T-TAAAAT--GA-CGC-T-A-ATTT-T--CC-CAATC-T--TG-----------AG-GGACCCGGTCC-CT-G-T-CC-CAAAA---TA-T-G-CTGC----G-AC-AGCCCTGAA
gi|11044 : TTCCCAA-T-TTGA--C-C-CCAAA---ACCCGA-T-A-ATTT-T--TC-CAATC-T--AA-----------AG-GGACCCGGACC-CA-G-T-AC-CAATA---TA-T-G-TAGT----G-AC-AGCCCTG
gi|11045 : TTCCCAA-T-TTGA--T-T-CAAAA---TAACGT-T-A-ATTT-T--CC-CATTC-T--CA-----------AG-GGACCCAGCCC-CT-A-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTGGA
gi|11046 : TTCACAA-T-TTCA--A-T-GAAAAT--GATGCA---G-ATTT-T--CC-CAATC-T--TA-----------AG-GGACCTGGCCC-CT-A-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTG
gi|11047 : TTCTCAAAT-TTGA--C-C-GAAAA---TATAGA-T-A-TTTT-T--CC-TAATC-A--AG-----------AT-GGAACTGGACG-TT-G-T-AC-CAAAA---AG-G-G-CAGT----G-AC-AGCCCT
gi|11048 : TTCTCAA-T-TTGA--C-C-GAAAA---TATAGA-T---TTTT-T--CC-TAATC-A--AG-----------AT-GGAACTGGACG-TT-G-TAGC-CAAAA---AG-G-G---GT----G-AC-AGCCCT
gi|11049 : TTCCCAA-T-TTGAT-T-C-AAATT---GA-CGT-T-A-ATTT-T--CC-CAATC-T--CA-----------AG-GGACCC-GACCACT-G-T-TC-CACAA---TA-T-G-CTGT----G-AC-AGCCCTG
gi|11050 : TTCCCAA-T-TTGA--C-C-AAAAAAAGAATCGATT-ATATTTAT--CC-CAATCTT--AC-----------GC-GGACCCAGACC-CCAG-TCCC-CAAAA---AGCT-ATCGAC----GCAC-AGCCC
gi|11051 : TTCCCAA-T-TTAA--TTC-AAAAT---GA-CAC-C-A-ATTT----CC-CAATC-T--CA-----------AG-GGACCTGGTTC-CT-G-C-CC-CAAAATAGAG-T-----GT----G-AC-AGCCCTG
gi|11052 : TTCCCAA-T-TTGAT-T-C-AAAAT---GA-CGC-T-A-ACTT-T--CC-CAATC-TCAAGGGAGTCGATGAAG-GGACCCAGTCC-CT-G-T-CC-CAAAT---TA-T-G-CTGT----G-AC-AGCCTTG
gi|11053 : TCCCCA-T-TTGA--C-C-AAAAT---GACCTA-T-A-ACTT-T--CT-CAATC-T--AA-----------AT-GGACCTCAACC-CT-G-T-AA-CAAAA---CA-T-G-CAGC----G-AC-AGCCCTG
gi|11054 : TCCCCA-T-TTGA--C-C-AAAAT---GACTGA-T-A-ACTT-T--CT-CAATC-T--AA-----------AT-GGACCTCAACC-CT-G-T-AA-CAAAA---CA-T-G-CAG
gi|11055 : TCCCAA-T-TTGA--C-C-AAAGA---GATAGC-T-A-ATTT-T--CA-AAATC-T--TG-----------AC-GAACCCGGACC-CT-G-T-AC-CAAAA---AG-G-G-AAGC----G-AC-AGCCCCGA
gi|11056 : CCCAA-T-TTGA--A---AAAAA---TATCGA-T-A-CTTT-T--CC--AATC-T--AA-----------AT-GGACCTGGACC-CT-G-T-AC-CAAAA---CA-C-G-CAGC----G-AC-AGCCCTG
gi|11057 : CCCAA-TCTTGATTC-C-AAAAA----ATCGA-TTG-ATTT-TTCCC-CAATT-T--AG-----------AT-GGACCCGGACC-CT-G-T-AC-CAAAA---AG-CGG-CAGC----G-AC-AGCCCTGA
gi|11058 : AA-T-TTCA--C-C-AAAAA---AATCAA-T-A-ATTT-T--CC-CAATA-T--AA-----------AT-GGACCTGGACC-CT-G-T-GC-AAAAA---AA-T-G-TAATACTAG-AC-AGCCCTG
gi|11059 : -AAAAA---GCACGA-T-----TT-T--CC-CAATC-T--AG-----------AT-GGACCCGTACC-TT-G-T-AC-CAAAA---AA-G-GTCAGT----G-AC-AGCCC
gi|11060 : --CC-CAATC-T--CA-----------AG-GGACCTGGTCC-CT-G-T-CC-CAGAA---TA-T-G-CTGT----G-AC-AGCCCTGGA
Alignments
lowQualScore : 1 1 77 111 777 5 1 1 1 1 22 1 1 888888888888888 55 1 1 1 44 1 555555 1 3 1 3333 1 1
lowQualScore : . . .. ... ... . . . . . .. . . ............... .. . . . .. . ...... . . . .... . .
lowQualScore : 6 6 00 777 999 2 5 5 5 5 00 5 5 222222222222222 11 5 5 5 00 5 888888 5 0 0 3333 5 5
consensus : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
Reference ( family-679 ) : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11034 : TTCCCAA-T-CTAA--A---AAAAA---AATCTA-A-A-ATTT-T--CC-CAATC-T--AA-----------AT-GGACCCGGACC-CT-G-T-AC-CAAAA---CA-T-G-CAGC----G-AC-AGCCCTG
gi|11035 : TTCCCAA-T-TTGAT-C-C-AAAAT---GA-CGC-T-A-ATTT-T--CC-TAATC-T--CA-----------AG-GGACCCAGTTG-CT-G-T-CT-GAAAA---TA-G-G-CTGT----G-TC-AGCCCTGAA
gi|11036 : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CC-CAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11037 : TTTCCAA-T-TTGA--C-A-AAAAA---GATCGA-T-A-ATTT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-A--G-T-CC-CAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11038 : TTCCCAA-T-TTGA--C-C-AAAAAAA-GATCGA-T-A-ATTC----CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CC-AAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11039 : TTCCCAA-T-TTGA--C-CAAAAAA---GATCGA-T-A-A-TT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CCACAAAA---AG-T-G-CAGC----A-GC-AGCCCTGAA
gi|11040 : TTCCCAA-T-TTGA--C-C-TAAAA---GATTGA-C-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCAGACT-CT-G-T-AC-CATAA---AG-G-G-CAGT----G-AC-AGCCCTG
gi|11041 : TTCATAA-T-TTGA--T-T-CAAAA---TAACGC-T-A--TTT-T--CC-CAATC-T----------------CAGGACCCGG-TC-CT-G-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTGA
gi|11042 : TTCCCAA-T-TTGA--C-G-AAAAA---GATCGA-T-A-ATTT-T--CCTCAATC-T--AG-----------AC-GGACCTGGACC-CA-GTT-AC-CAAAA---A--T---CAGT----G-ACTAGCCCTG
gi|11043 : TTCACAA-T-TTGA--T-T-TAAAAT--GA-CGC-T-A-ATTT-T--CC-CAATC-T--TG-----------AG-GGACCCGGTCC-CT-G-T-CC-CAAAA---TA-T-G-CTGC----G-AC-AGCCCTGAA
gi|11044 : TTCCCAA-T-TTGA--C-C-CCAAA---ACCCGA-T-A-ATTT-T--TC-CAATC-T--AA-----------AG-GGACCCGGACC-CA-G-T-AC-CAATA---TA-T-G-TAGT----G-AC-AGCCCTG
gi|11045 : TTCCCAA-T-TTGA--T-T-CAAAA---TAACGT-T-A-ATTT-T--CC-CATTC-T--CA-----------AG-GGACCCAGCCC-CT-A-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTGGA
gi|11046 : TTCACAA-T-TTCA--A-T-GAAAAT--GATGCA---G-ATTT-T--CC-CAATC-T--TA-----------AG-GGACCTGGCCC-CT-A-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTG
gi|11047 : TTCTCAAAT-TTGA--C-C-GAAAA---TATAGA-T-A-TTTT-T--CC-TAATC-A--AG-----------AT-GGAACTGGACG-TT-G-T-AC-CAAAA---AG-G-G-CAGT----G-AC-AGCCCT
gi|11048 : TTCTCAA-T-TTGA--C-C-GAAAA---TATAGA-T---TTTT-T--CC-TAATC-A--AG-----------AT-GGAACTGGACG-TT-G-TAGC-CAAAA---AG-G-G---GT----G-AC-AGCCCT
gi|11049 : TTCCCAA-T-TTGAT-T-C-AAATT---GA-CGT-T-A-ATTT-T--CC-CAATC-T--CA-----------AG-GGACCC-GACCACT-G-T-TC-CACAA---TA-T-G-CTGT----G-AC-AGCCCTG
gi|11050 : TTCCCAA-T-TTGA--C-C-AAAAAAAGAATCGATT-ATATTTAT--CC-CAATCTT--AC-----------GC-GGACCCAGACC-CCAG-TCCC-CAAAA---AGCT-ATCGAC----GCAC-AGCCC
gi|11051 : TTCCCAA-T-TTAA--TTC-AAAAT---GA-CAC-C-A-ATTT----CC-CAATC-T--CA-----------AG-GGACCTGGTTC-CT-G-C-CC-CAAAATAGAG-T-----GT----G-AC-AGCCCTG
gi|11052 : TTCCCAA-T-TTGAT-T-C-AAAAT---GA-CGC-T-A-ACTT-T--CC-CAATC-TCAAGGGAGTCGATGAAG-GGACCCAGTCC-CT-G-T-CC-CAAAT---TA-T-G-CTGT----G-AC-AGCCTTG
gi|11053 : TCCCCA-T-TTGA--C-C-AAAAT---GACCTA-T-A-ACTT-T--CT-CAATC-T--AA-----------AT-GGACCTCAACC-CT-G-T-AA-CAAAA---CA-T-G-CAGC----G-AC-AGCCCTG
gi|11054 : TCCCCA-T-TTGA--C-C-AAAAT---GACTGA-T-A-ACTT-T--CT-CAATC-T--AA-----------AT-GGACCTCAACC-CT-G-T-AA-CAAAA---CA-T-G-CAG
gi|11055 : TCCCAA-T-TTGA--C-C-AAAGA---GATAGC-T-A-ATTT-T--CA-AAATC-T--TG-----------AC-GAACCCGGACC-CT-G-T-AC-CAAAA---AG-G-G-AAGC----G-AC-AGCCCCGA
gi|11056 : CCCAA-T-TTGA--A---AAAAA---TATCGA-T-A-CTTT-T--CC--AATC-T--AA-----------AT-GGACCTGGACC-CT-G-T-AC-CAAAA---CA-C-G-CAGC----G-AC-AGCCCTG
gi|11057 : CCCAA-TCTTGATTC-C-AAAAA----ATCGA-TTG-ATTT-TTCCC-CAATT-T--AG-----------AT-GGACCCGGACC-CT-G-T-AC-CAAAA---AG-CGG-CAGC----G-AC-AGCCCTGA
gi|11058 : AA-T-TTCA--C-C-AAAAA---AATCAA-T-A-ATTT-T--CC-CAATA-T--AA-----------AT-GGACCTGGACC-CT-G-T-GC-AAAAA---AA-T-G-TAATACTAG-AC-AGCCCTG
gi|11059 : -AAAAA---GCACGA-T-----TT-T--CC-CAATC-T--AG-----------AT-GGACCCGTACC-TT-G-T-AC-CAAAA---AA-G-GTCAGT----G-AC-AGCCC
gi|11060 : --CC-CAATC-T--CA-----------AG-GGACCTGGTCC-CT-G-T-CC-CAGAA---TA-T-G-CTGT----G-AC-AGCCCTGGA
blockSeqs : A C TT CA AAG T T T T A TC T T CAAGGGAGTCGATGA CA A A T AG A TAGAG G T T ACTA C T
blockSeqs : . . T TC AA T . . . . . . . CA G . . . CC . AGC . T A . . .
blockSeqs : . . T C T T . . . . . . . AG C . . . C . TA . . A . . .
blockSeqs : . . T C T T . . . . . . . AG C . . . C . AG . . A . . .
blockSeqs : . . . A . T . . . . . . . AG C . . . C . AG . . A . . .
blockSeqs : . . . C . A . . . . . . . AG C . . . C . AG . . A . . .
blockSeqs : . . . C . T . . . . . . . AG C . . . C . AG . . T . . .
blockSeqs : . . . T . C . . . . . . . AG C . . . A . AG . . A . . .
blockSeqs : . . . G . A . . . . . . . TG G . . . C . TA . . T . . .
blockSeqs : . . . T . T . . . . . . . AA G . . . A . TA . . A . . .
blockSeqs : . . . C . T . . . . . . . CA G . . . C . TA . . T . . .
blockSeqs : . . . T . T . . . . . . . TA G . . . A . TA . . T . . .
blockSeqs : . . . T . T . . . . . . . AG T . . . C . TA . . A . . .
blockSeqs : . . . C . C . . . . . . . AG T . . . C . AG . . T . . .
blockSeqs : . . . C . C . . . . . . . CA G . . . A . AG . . G . . .
blockSeqs : . . . C . T . . . . . . . AC C . . . T . TA . . T . . .
blockSeqs : . . . C . T . . . . . . . CA G . . . C . TA . . A . . .
blockSeqs : . . . C . T . . . . . . . AA G . . . C . CA . . A . . .
blockSeqs : . . . C . T . . . . . . . AA T . . . A . CA . . A . . .
blockSeqs : . . . C . A . . . . . . . TG T . . . A . AG . . A . . .
blockSeqs : . . . C . . . . . . . . . AA C . . . A . CA . . A . . .
blockSeqs : . . . C . . . . . . . . . AG T . . . A . AG . . A . . .
blockSeqs : . . . C . . . . . . . . . AA T . . . A . AA . . A . . .
blockSeqs : . . . . . . . . . . . . . AG T . . . G . AA . . T . . .
blockSeqs : . . . . . . . . . CA T . . . A . TA . . . . . .
blockSeqs : . . . . G . . . C . A . . .
blockSeqCons : C**
originalCons : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
finalCons : TTCCCAA-T-TTGA--CC--AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
Alignments
lowQualScore : 1 1 77 111 777 5 1 1 1 1 22 1 1 888888888888888 55 1 1 1 44 1 555555 1 3 1 3333 1 1
lowQualScore : . . .. ... ... . . . . . .. . . ............... .. . . . .. . ...... . . . .... . .
lowQualScore : 6 6 00 777 999 2 5 5 5 5 00 5 5 222222222222222 11 5 5 5 00 5 888888 5 0 0 3333 5 5
consensus : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
Reference ( family-679 ) : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCGGACC-CT-G-T-NC-CAAAA---NG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11034 : TTCCCAA-T-CTAA--A---AAAAA---AATCTA-A-A-ATTT-T--CC-CAATC-T--AA-----------AT-GGACCCGGACC-CT-G-T-AC-CAAAA---CA-T-G-CAGC----G-AC-AGCCCTG
gi|11035 : TTCCCAA-T-TTGAT-C-C-AAAAT---GA-CGC-T-A-ATTT-T--CC-TAATC-T--CA-----------AG-GGACCCAGTTG-CT-G-T-CT-GAAAA---TA-G-G-CTGT----G-TC-AGCCCTGAA
gi|11036 : TTCCCAA-T-TTGA--C-C-AAAAA---GATCGA-T-A-ATTT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CC-CAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11037 : TTTCCAA-T-TTGA--C-A-AAAAA---GATCGA-T-A-ATTT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-A--G-T-CC-CAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11038 : TTCCCAA-T-TTGA--C-C-AAAAAAA-GATCGA-T-A-ATTC----CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CC-AAAAA---AG-T-G-CAGC----G-AC-AGCCCTGAA
gi|11039 : TTCCCAA-T-TTGA--C-CAAAAAA---GATCGA-T-A-A-TT-C--CC-CAATC-T--AG-----------AC-GGGCCCGGACC-CA-G-T-CCACAAAA---AG-T-G-CAGC----A-GC-AGCCCTGAA
gi|11040 : TTCCCAA-T-TTGA--C-C-TAAAA---GATTGA-C-A-ATTT-T--CC-CAATC-T--AG-----------AC-GGACCCAGACT-CT-G-T-AC-CATAA---AG-G-G-CAGT----G-AC-AGCCCTG
gi|11041 : TTCATAA-T-TTGA--T-T-CAAAA---TAACGC-T-A--TTT-T--CC-CAATC-T----------------CAGGACCCGG-TC-CT-G-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTGA
gi|11042 : TTCCCAA-T-TTGA--C-G-AAAAA---GATCGA-T-A-ATTT-T--CCTCAATC-T--AG-----------AC-GGACCTGGACC-CA-GTT-AC-CAAAA---A--T---CAGT----G-ACTAGCCCTG
gi|11043 : TTCACAA-T-TTGA--T-T-TAAAAT--GA-CGC-T-A-ATTT-T--CC-CAATC-T--TG-----------AG-GGACCCGGTCC-CT-G-T-CC-CAAAA---TA-T-G-CTGC----G-AC-AGCCCTGAA
gi|11044 : TTCCCAA-T-TTGA--C-C-CCAAA---ACCCGA-T-A-ATTT-T--TC-CAATC-T--AA-----------AG-GGACCCGGACC-CA-G-T-AC-CAATA---TA-T-G-TAGT----G-AC-AGCCCTG
gi|11045 : TTCCCAA-T-TTGA--T-T-CAAAA---TAACGT-T-A-ATTT-T--CC-CATTC-T--CA-----------AG-GGACCCAGCCC-CT-A-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTGGA
gi|11046 : TTCACAA-T-TTCA--A-T-GAAAAT--GATGCA---G-ATTT-T--CC-CAATC-T--TA-----------AG-GGACCTGGCCC-CT-A-T-CC-CAAAA---TA-T-G-CTGT----G-AC-AGCCCTG
gi|11047 : TTCTCAAAT-TTGA--C-C-GAAAA---TATAGA-T-A-TTTT-T--CC-TAATC-A--AG-----------AT-GGAACTGGACG-TT-G-T-AC-CAAAA---AG-G-G-CAGT----G-AC-AGCCCT
gi|11048 : TTCTCAA-T-TTGA--C-C-GAAAA---TATAGA-T---TTTT-T--CC-TAATC-A--AG-----------AT-GGAACTGGACG-TT-G-TAGC-CAAAA---AG-G-G---GT----G-AC-AGCCCT
gi|11049 : TTCCCAA-T-TTGAT-T-C-AAATT---GA-CGT-T-A-ATTT-T--CC-CAATC-T--CA-----------AG-GGACCC-GACCACT-G-T-TC-CACAA---TA-T-G-CTGT----G-AC-AGCCCTG
gi|11050 : TTCCCAA-T-TTGA--C-C-AAAAAAAGAATCGATT-ATATTTAT--CC-CAATCTT--AC-----------GC-GGACCCAGACC-CCAG-TCCC-CAAAA---AGCT-ATCGAC----GCAC-AGCCC
gi|11051 : TTCCCAA-T-TTAA--TTC-AAAAT---GA-CAC-C-A-ATTT----CC-CAATC-T--CA-----------AG-GGACCTGGTTC-CT-G-C-CC-CAAAATAGAG-T-----GT----G-AC-AGCCCTG
gi|11052 : TTCCCAA-T-TTGAT-T-C-AAAAT---GA-CGC-T-A-ACTT-T--CC-CAATC-TCAAGGGAGTCGATGAAG-GGACCCAGTCC-CT-G-T-CC-CAAAT---TA-T-G-CTGT----G-AC-AGCCTTG
gi|11053 : TCCCCA-T-TTGA--C-C-AAAAT---GACCTA-T-A-ACTT-T--CT-CAATC-T--AA-----------AT-GGACCTCAACC-CT-G-T-AA-CAAAA---CA-T-G-CAGC----G-AC-AGCCCTG
gi|11054 : TCCCCA-T-TTGA--C-C-AAAAT---GACTGA-T-A-ACTT-T--CT-CAATC-T--AA-----------AT-GGACCTCAACC-CT-G-T-AA-CAAAA---CA-T-G-CAG
gi|11055 : TCCCAA-T-TTGA--C-C-AAAGA---GATAGC-T-A-ATTT-T--CA-AAATC-T--TG-----------AC-GAACCCGGACC-CT-G-T-AC-CAAAA---AG-G-G-AAGC----G-AC-AGCCCCGA
gi|11056 : CCCAA-T-TTGA--A---AAAAA---TATCGA-T-A-CTTT-T--CC--AATC-T--AA-----------AT-GGACCTGGACC-CT-G-T-AC-CAAAA---CA-C-G-CAGC----G-AC-AGCCCTG
gi|11057 : CCCAA-TCTTGATTC-C-AAAAA----ATCGA-TTG-ATTT-TTCCC-CAATT-T--AG-----------AT-GGACCCGGACC-CT-G-T-AC-CAAAA---AG-CGG-CAGC----G-AC-AGCCCTGA
gi|11058 : AA-T-TTCA--C-C-AAAAA---AATCAA-T-A-ATTT-T--CC-CAATA-T--AA-----------AT-GGACCTGGACC-CT-G-T-GC-AAAAA---AA-T-G-TAATACTAG-AC-AGCCCTG
gi|11059 : -AAAAA---GCACGA-T-----TT-T--CC-CAATC-T--AG-----------AT-GGACCCGTACC-TT-G-T-AC-CAAAA---AA-G-GTCAGT----G-AC-AGCCC
gi|11060 : --CC-CAATC-T--CA-----------AG-GGACCTGGTCC-CT-G-T-CC-CAGAA---TA-T-G-CTGT----G-AC-AGCCCTGGA