lowQualScore : 1 3 3 1 1 22 3 55 222 1 88 1 3
lowQualScore : . . . . . .. . .. ... . .. . .
lowQualScore : 5 0 0 5 5 00 0 00 666 5 00 5 0
consensus : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
Reference ( gi|46090 ) : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46091 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCAATT-CA--TTTATCT-AT-GCACA
gi|46093 : TTTTTTCTG-TATTC-ATA-CT-CAAA-AT--CA-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46094 : TTTTTCTTG-TA-TC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46095 : TTTTTTCTG-TACTC-ATA-CT-GAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--GTCATCT-AT-GCACA
gi|46097 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TACT-TT---TTTGCTGATT-CA--TTTACCT-AT-GCACA
gi|46098 : TTTTTTCAG-TACTC-AAA-TT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GTACA
gi|46092 : TTTTTTCTG-TATTC-ATA-CT-CAAA-TTGTCG-TAC--TT---TGTGCCGATT-CAC-TTTATCT-AT-GCACA
gi|46089 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46088 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46087 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46101 : TTTTTTCTG-TATGC-ATA-CT-CAAA-CT--CG-TTT--TT---TGTG-CGATT-CA--TTTATCT-AT-GCACA
gi|46099 : TTTTTTCTG-TACTC-GTA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--TTTATTC-AT-
gi|46100 : TTTTTTCTG-TATTC-ATA-CTCCAAA-CT--CG-TACT-TT---TGTG-CGATT-CA---TTATCT-AT-GCACAa
gi|46096 : TTTTTTCCA-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGTCGATT--A---TTACCT-AT-GCAC
gi|46103 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CA-TAA--TT---TGAGTCGATT-CA--TTTATA--AT-GCACA
gi|46102 : TTTTCTCTC-TACTC-ATAGCT-CAAA-CT--CG-TACTTTT---TGTGCCGATT-CA---TTATCT-AT-GTGCA
gi|46104 : TTTTTTCTGATATTC-ATA-CT-CAAA-CT--CGTTAC--TTGAGTGTGCCAATT-CAATTCTATCTGAT-GCACA
gi|46105 : TTTTTTCTG-TACTC-ATA-CT-CACA-CT--C------------TGTGAGGACT-CA--TTTATCT-AT-GCACA
gi|46107 : TTCTTCTG-TATTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46106 : TTTTTCTC-TACTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGATT-CA--TTTATGT-AT-GCACA
gi|46108 : TTTTACTG-TACTC-ATA-TT-CAAA-CT--CG-TAC--TC---TGTGTC-ATTATA--TTTATCT-AT-GCACA
gi|46109 : TTTTTCTG-TATTC-ATAACT-CAAAATT--CG-TAC--TA---TGTGCCGATT-AA--TTT-TCT-AT-GCACA
gi|46111 : TTTTACCT-TACTC-ATA-CT-CAAA-CT--CC-TAC--TC---TGAGCCGATA-TA--TTTATCT-AT-GCACA
gi|46110 : TTTTACCA-TACTC-ATA-CT-CAAG-CT--CGATAC--TC---AGTGCCGA-T-CA--TTTATCT-AT-GC
gi|46112 : TTCTG-TACTC-ATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCGATT-CA--TTTATTT-AT-GCACA
gi|46114 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA
gi|46113 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA
Alignments
lowQualScore : 1 2 2 1 1 22 2 44 222 1 77 1 2
lowQualScore : . . . . . .. . .. ... . .. . .
lowQualScore : 4 9 9 4 4 00 9 88 555 4 77 4 9
consensus : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
Reference ( family-655 ) : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46087 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46088 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46089 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46090 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46091 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCAATT-CA--TTTATCT-AT-GCACA
gi|46092 : TTTTTTCTG-TATTC-ATA-CT-CAAA-TTGTCG-TAC--TT---TGTGCCGATT-CAC-TTTATCT-AT-GCACA
gi|46093 : TTTTTTCTG-TATTC-ATA-CT-CAAA-AT--CA-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46094 : TTTTTCTTG-TA-TC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46095 : TTTTTTCTG-TACTC-ATA-CT-GAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--GTCATCT-AT-GCACA
gi|46096 : TTTTTTCCA-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGTCGATT--A---TTACCT-AT-GCAC
gi|46097 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TACT-TT---TTTGCTGATT-CA--TTTACCT-AT-GCACA
gi|46098 : TTTTTTCAG-TACTC-AAA-TT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GTACA
gi|46099 : TTTTTTCTG-TACTC-GTA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--TTTATTC-AT-
gi|46100 : TTTTTTCTG-TATTC-ATA-CTCCAAA-CT--CG-TACT-TT---TGTG-CGATT-CA---TTATCT-AT-GCACAa
gi|46101 : TTTTTTCTG-TATGC-ATA-CT-CAAA-CT--CG-TTT--TT---TGTG-CGATT-CA--TTTATCT-AT-GCACA
gi|46102 : TTTTCTCTC-TACTC-ATAGCT-CAAA-CT--CG-TACTTTT---TGTGCCGATT-CA---TTATCT-AT-GTGCA
gi|46103 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CA-TAA--TT---TGAGTCGATT-CA--TTTATA--AT-GCACA
gi|46104 : TTTTTTCTGATATTC-ATA-CT-CAAA-CT--CGTTAC--TTGAGTGTGCCAATT-CAATTCTATCTGAT-GCACA
gi|46105 : TTTTTTCTG-TACTC-ATA-CT-CACA-CT--C------------TGTGAGGACT-CA--TTTATCT-AT-GCACA
gi|46106 : TTTTTCTC-TACTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGATT-CA--TTTATGT-AT-GCACA
gi|46107 : TTCTTCTG-TATTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46108 : TTTTACTG-TACTC-ATA-TT-CAAA-CT--CG-TAC--TC---TGTGTC-ATTATA--TTTATCT-AT-GCACA
gi|46109 : TTTTTCTG-TATTC-ATAACT-CAAAATT--CG-TAC--TA---TGTGCCGATT-AA--TTT-TCT-AT-GCACA
gi|46110 : TTTTACCA-TACTC-ATA-CT-CAAG-CT--CGATAC--TC---AGTGCCGA-T-CA--TTTATCT-AT-GC
gi|46111 : TTTTACCT-TACTC-ATA-CT-CAAA-CT--CC-TAC--TC---TGAGCCGATA-TA--TTTATCT-AT-GCACA
gi|46112 : TTCTG-TACTC-ATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCGATT-CA--TTTATTT-AT-GCACA
gi|46113 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA
gi|46114 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA
Alignments
lowQualScore : 1 2 2 1 1 22 2 44 222 1 77 1 2
lowQualScore : . . . . . .. . .. ... . .. . .
lowQualScore : 4 9 9 4 4 00 9 88 555 4 77 4 9
consensus : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
Reference ( family-655 ) : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46087 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46088 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46089 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46090 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46091 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCAATT-CA--TTTATCT-AT-GCACA
gi|46092 : TTTTTTCTG-TATTC-ATA-CT-CAAA-TTGTCG-TAC--TT---TGTGCCGATT-CAC-TTTATCT-AT-GCACA
gi|46093 : TTTTTTCTG-TATTC-ATA-CT-CAAA-AT--CA-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46094 : TTTTTCTTG-TA-TC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46095 : TTTTTTCTG-TACTC-ATA-CT-GAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--GTCATCT-AT-GCACA
gi|46096 : TTTTTTCCA-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGTCGATT--A---TTACCT-AT-GCAC
gi|46097 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TACT-TT---TTTGCTGATT-CA--TTTACCT-AT-GCACA
gi|46098 : TTTTTTCAG-TACTC-AAA-TT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GTACA
gi|46099 : TTTTTTCTG-TACTC-GTA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--TTTATTC-AT-
gi|46100 : TTTTTTCTG-TATTC-ATA-CTCCAAA-CT--CG-TACT-TT---TGTG-CGATT-CA---TTATCT-AT-GCACAa
gi|46101 : TTTTTTCTG-TATGC-ATA-CT-CAAA-CT--CG-TTT--TT---TGTG-CGATT-CA--TTTATCT-AT-GCACA
gi|46102 : TTTTCTCTC-TACTC-ATAGCT-CAAA-CT--CG-TACTTTT---TGTGCCGATT-CA---TTATCT-AT-GTGCA
gi|46103 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CA-TAA--TT---TGAGTCGATT-CA--TTTATA--AT-GCACA
gi|46104 : TTTTTTCTGATATTC-ATA-CT-CAAA-CT--CGTTAC--TTGAGTGTGCCAATT-CAATTCTATCTGAT-GCACA
gi|46105 : TTTTTTCTG-TACTC-ATA-CT-CACA-CT--C------------TGTGAGGACT-CA--TTTATCT-AT-GCACA
gi|46106 : TTTTTCTC-TACTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGATT-CA--TTTATGT-AT-GCACA
gi|46107 : TTCTTCTG-TATTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46108 : TTTTACTG-TACTC-ATA-TT-CAAA-CT--CG-TAC--TC---TGTGTC-ATTATA--TTTATCT-AT-GCACA
gi|46109 : TTTTTCTG-TATTC-ATAACT-CAAAATT--CG-TAC--TA---TGTGCCGATT-AA--TTT-TCT-AT-GCACA
gi|46110 : TTTTACCA-TACTC-ATA-CT-CAAG-CT--CGATAC--TC---AGTGCCGA-T-CA--TTTATCT-AT-GC
gi|46111 : TTTTACCT-TACTC-ATA-CT-CAAA-CT--CC-TAC--TC---TGAGCCGATA-TA--TTTATCT-AT-GCACA
gi|46112 : TTCTG-TACTC-ATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCGATT-CA--TTTATTT-AT-GCACA
gi|46113 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA
gi|46114 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA
blockSeqs : A G G C A GT T TT GAG A AT G G
blockSeqs : . G A . . . A T . . C . G
blockSeqs : . . . . . . . T . . C . .
blockSeqs : . . . . . . . . . . C . .
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blockSeqCons : **
originalCons : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
finalCons : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
Alignments
lowQualScore : 1 2 2 1 1 22 2 44 222 1 77 1 2
lowQualScore : . . . . . .. . .. ... . .. . .
lowQualScore : 4 9 9 4 4 00 9 88 555 4 77 4 9
consensus : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
Reference ( family-655 ) : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46087 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46088 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46089 : TTTTTTCTG-TGCTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGA-T-CAC-TTTATCT-AT-GCACA
gi|46090 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46091 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCAATT-CA--TTTATCT-AT-GCACA
gi|46092 : TTTTTTCTG-TATTC-ATA-CT-CAAA-TTGTCG-TAC--TT---TGTGCCGATT-CAC-TTTATCT-AT-GCACA
gi|46093 : TTTTTTCTG-TATTC-ATA-CT-CAAA-AT--CA-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46094 : TTTTTCTTG-TA-TC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46095 : TTTTTTCTG-TACTC-ATA-CT-GAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--GTCATCT-AT-GCACA
gi|46096 : TTTTTTCCA-TACTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGTCGATT--A---TTACCT-AT-GCAC
gi|46097 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CG-TACT-TT---TTTGCTGATT-CA--TTTACCT-AT-GCACA
gi|46098 : TTTTTTCAG-TACTC-AAA-TT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GTACA
gi|46099 : TTTTTTCTG-TACTC-GTA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-TA--TTTATTC-AT-
gi|46100 : TTTTTTCTG-TATTC-ATA-CTCCAAA-CT--CG-TACT-TT---TGTG-CGATT-CA---TTATCT-AT-GCACAa
gi|46101 : TTTTTTCTG-TATGC-ATA-CT-CAAA-CT--CG-TTT--TT---TGTG-CGATT-CA--TTTATCT-AT-GCACA
gi|46102 : TTTTCTCTC-TACTC-ATAGCT-CAAA-CT--CG-TACTTTT---TGTGCCGATT-CA---TTATCT-AT-GTGCA
gi|46103 : TTTTTTCTG-TACTC-ATA-CT-CAAA-CT--CA-TAA--TT---TGAGTCGATT-CA--TTTATA--AT-GCACA
gi|46104 : TTTTTTCTGATATTC-ATA-CT-CAAA-CT--CGTTAC--TTGAGTGTGCCAATT-CAATTCTATCTGAT-GCACA
gi|46105 : TTTTTTCTG-TACTC-ATA-CT-CACA-CT--C------------TGTGAGGACT-CA--TTTATCT-AT-GCACA
gi|46106 : TTTTTCTC-TACTC-ATA-CT-CAAA-CT--CG-GAC--TT---TGTGCCGATT-CA--TTTATGT-AT-GCACA
gi|46107 : TTCTTCTG-TATTC-ATA-CT-CAAA-CT--CG-TAC--TT---TGTGCCGATT-CA--TTTATCT-AT-GCACA
gi|46108 : TTTTACTG-TACTC-ATA-TT-CAAA-CT--CG-TAC--TC---TGTGTC-ATTATA--TTTATCT-AT-GCACA
gi|46109 : TTTTTCTG-TATTC-ATAACT-CAAAATT--CG-TAC--TA---TGTGCCGATT-AA--TTT-TCT-AT-GCACA
gi|46110 : TTTTACCA-TACTC-ATA-CT-CAAG-CT--CGATAC--TC---AGTGCCGA-T-CA--TTTATCT-AT-GC
gi|46111 : TTTTACCT-TACTC-ATA-CT-CAAA-CT--CC-TAC--TC---TGAGCCGATA-TA--TTTATCT-AT-GCACA
gi|46112 : TTCTG-TACTC-ATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCGATT-CA--TTTATTT-AT-GCACA
gi|46113 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA
gi|46114 : TTCTG-TACTCGATA-CT-CAAA-CT--TA-TAC--TT---TGTGCCG-TT-CA--TTTATTT-ATGGCACA