lowQualScore : 44444444444444444444 1111 333333333
lowQualScore : 00000000000000000000 111 0 0 0 5555 11 000000000 0 0 0 11 2 888 0 2
lowQualScore : .................... ... . . . .... .. ......... . . . .. . ... . .
lowQualScore : 99999999999999999999 666 9 2 9 5555 33 222222222 7 7 7 00 2 777 9 1
consensus : GGACAAGT-AA-A-G---TC---CA--GTTCGGACAA---G-TGAA-A--C-TCG--A--TA-CT--CA-C-T-TGT--CCG-ATC-GGG-CA-AGTG
Reference ( gi|83909 ) : GGACAAGTGAA-A-G---CC---CA--GTTCGGACAA---G-TGAA-A--C-TCG--A--TA-CT--CA-C-T-TGT--CCG-ATC-GGG-CA-AGTG
gi|83921 : GGACAAGTGAA-A-G---CC---CA--GTTCGGACAA---G-TGAA-A--C-TCG--A--TA-CA--CA-C-T-TGT--CCG-ATC-GGG-CA-AGTG
gi|83920 : GGACAAGTGAA-A-G---CC---CA--GTTCGGACAA---G-TGAA-A--C-TCG--A--TA-CA--CA-C-T-TGT--CCG-ATC-GGG-CA-AGTG
gi|83914 : GGACAAGTAAA-A-G---CC---CG--GTTCGGACAA---G-TGAA-A--C-TCG--A--TA-CC--CA-C-T-TGT--CCG-ATC-GGG-CA-AGTG
gi|83917 : GGACAAGTGAA-A-A---CC---CA--GTTCGGACAA---G-TGAA-A--C-TCG--A--TA-CA--CA-C-T-TGT--CCG-ATC-GGG-TA-AGTG
gi|83925 : GGACAAGTGAA-A-A---CC---CA--GTTCGGGCAA---G-TGAA-A--C-TCA--A--TA-CA--CA-C-T-TGT--CCG-ATC-GGG-CA-AGT
gi|83905 : GGACAAGTAAA-A-G---CC---TG--CTTCGGACAA---G-TGAA-A--C-TCG--A--TA-CC--CA-C-T-TGT--CCG-ATC-GGG-CA-AGTG
gi|83915 : GAACAAGTAAA-A-G---CC---CG--GTTCGGACAA---G-TGAA-AG-C-TCG--A--TACCC--CA-C-T-TGT--CCG-ATC-GGG-CA-AGTG
gi|83923 : GGACAAGTGAAGA-G---CC---CA--GTT-GGACAA---G-TGAA-T--C-TCG--A--TA-CA--CA-CTT-TGT--CCG-ATC--GG-CA-AGTG
gi|83908 : GGACAAGT--A-A-G---TTTTTCA---TTCGGACAA---G-TGAA-AG-T-TTG--AG-TA-TT-----C-T-TGC--CCG-A-C-GGG-CA-AGTG
gi|83907 : GGACAAGT--A-A-G---TTTTTCA---TTCGGACAA---G-TGAA-AG-T-TTG--AG-TA-TT-----C-T-TGC--CCG-A-C-GGG-CA-AGTG
gi|83906 : GGACAAGT--A-A-G---TTTTTCA---TTCGGACAA---G-TGAA-AG-T-TTG--AG-TA-TT-----C-T-TGC--CCG-A-C-GGG-CA-AGTG
gi|83927 : GGACAAGTAAA-ATA---TA---CA---TTCGGACAA---G-TAAC-A--T-TTG--A--TG--T--CAGC-T-TGT--CCT-AT--GGA-CA-AGTG
gi|83902 : GGACAAGTAAG-T-G---TT---TC--ATTCGGACAA---G-TGAA-AG-T-TTG--AG-TA-----TA-C-T-TGC--CCG-AT--GGA-CA-AGTG
gi|83903 : GGACAAGT--A-A-G---TTTTTCA---TTCGGACAA---G-TGAA-AG-T-TTG--AG-TA-----TA-C-T-TGC--CCG-AT--GGA-CA-AGTG
gi|83904 : GGACAAGT--A-A-G---TTTTTCA---TTCGGACAA---G-TGAA-AG-T-TTG--AG-TA-----TA-C-T-TGC--CCG-A-C-GGA-CA-AGTG
gi|83924 : GGACAGGTAAA-ATA---TA---CA---TTCGGACAA---G-TAAC-A--T-TTG--G--TG-GC--AG-C-T-TGT--CCG-AT--GGA-CA-AGTG
gi|83930 : GGACAAGTAAA-ATA---TA---CA---TTTGGACAA---G-TAAC-A--T-TTG--G--TG-GC--AG-C-T-TGT--CCG-A-C-GGA-CA-AGTG
gi|83928 : GGACAAGTGAT-ATA---TA---CA---TTCGGACAA---G-TAGC-A--T-TTG--G--TG-GC--AG-C-T-TGT--CCG-AT--GGA-CA-AGTG
gi|83916 : GGACAAGT--A-A-G---TTTTTCA--AT-CGGACAA---G-TGAA-A--G-TTA--G--AG-TT--TA-C-T-TGC--CCG-A-A-GGA-CA-AGTG
gi|83910 : GGACAAGT--A-A-G---TTTTTCA---TTCGGACAA---G-TGAA-A--G-TTG--G--AG-TT--TA-C-T-TGC--CCA-A-A-GAA-CA-AGTG
gi|83912 : GGACAAGT--A-A-G---TTTTTCA---TTCAGACAA---G-TGAA-AG-T-TTG--AG-TA-----TA-C-T-TGC--CCG-AC---GG-CACAGTG
gi|83911 : GGACAAGT--A-A-G---TTTTTCA---TTCAGACAA---G-TGAA-AG-T-TTG--AG-TA-----TA-C-T-TGC--CCG-AC---GG-CACAGTG
gi|83929 : GGGCCAGTTAA-A-G---TTTTTCA---TTCGGACAA---GTTGAA-AGTT-TCAGTA--TA-CT-------T-TG---CCGTATT-GGA-CA-AGTG
gi|83926 : GGACAAGC--A-A-G---TT---TATCATTCGGACAG---T-TGAATA--G-TTG------A-GT--TA-C-T-TGC--CCG-A-C-GGACCA-AGTG
gi|83918 : GGACAGGT--A-A-G---TTTTTCA---TTCGGACAA---G-TGAA-AG-T-TTG--AGTTA-----TA-C-TGTGCGGCCG-AT--GGA-CA-AGT
gi|83919 : GGACAAGT--A-A-GTTTTT---CA---TTCGGAGAA---G-TGAA-A--G-TTT-----TAGTT--TA-C-T-TGC--CCG-A
gi|83921 : -G---CC---C---GATCGGACAA---G-TGTG-T--A-TCG--A--GT-TT--CA-C-T-TGT--CCG-AACTGGG-Caagacgagtg
gi|83920 : ggacaagtgaaa-G---CC---C---GATCGGACAA---G-TGTG-T--A-TCG--A--GT-TT--CA-C-T-TGT--CCG-AACTGGG-Caagtg
gi|83914 : ggacaagtgaaa-G---CC---C---GATCGGACAA---G-TGGG-T--A-TCG--A--GT-TT--CA-C-T-TGT--CCGAACC-GGG-Caagtg
gi|83905 : ggacaagtaaaa-G---CC---C---GATCGGACAA---G-TGGG-T--A-TCG--A--GT-TT--CA-C-T-TGT--CCG-Aaagtg
gi|83915 : ggacaagtaaaagcctgct-G---CC---C---GATCGGACAA---G-TGGG-G--TATCG--A---G-CTTTCA-C-T-TGT--CCGAACC-GGG-Caagtg
gi|83902 : gaacaagtaaaa-G---TC---CA----TCGGGCAA---G-T-AT-A--C-TCA--A---A-CTTTCA-C-T-TGT--CCG-Aaagtg
gi|83903 : ggacaagtaagtgtttcat-G---TC---CA----TCGGGCAA---G-T-AT-A--C-TCA--A---A-CTTTCA-C-T-TGT--CCG-Aaagtg
gi|83913 : ggacaagtaagtttttcatTTCAGACAA---G-TGAA-AG-T-TTG--AG-TA--T--GA-C-T-TGC--CCG-A-C-GGA-CA-AGTGaagtg
gi|83916 : ggacaataagtttttcaTTCGGGCAA---G-T-AA-A--C-TCT--A---A-CTTTCA-C-T-TGT--CCG-ATT-G
gi|83910 : ggacaagtaagtttttTTTGGGCAA---G-T-AA-A--C-TCC--A---A-CTTTCA-C-T-TGT--CCG-Aggacaagtg
gi|83931 : ggacaagtaagtttttcatTTTGGACAA---A-T-AA-A--C-TCA--A---A-CTTTCA-C-T-TGT--CCG-Agaacaagtg
gi|83931 : aaatttttcatTTCGGACAA---G-TGAA-AG-T-TTG--A---G-TT--TA-T-T-TGT--CCA-A-A-GTA-CA-AGTGgtacaagtg
gi|83917 : aaatttttcaTCGGACAA---G-TGTG-T--A-TCG--A--GT-TT--CA-C-T-TGT--CCG-A
gi|83923 : ggacaagtgaaaacccagtTCGGACAAAGTG-TGTA------TCG--A--GA-TT--CA-C-T-TGT--CCA-ACT-GGG-Ctcgggtaagtg
gi|83904 : ggacaagtgaagaTCGGGCAA---G-T-AT-A--C-TCA--A---A-CTTTCA-C-T-TGT--CCG-Atcggcaagtg
gi|83913 : ggacaagtaagtttttcatTCGGGCAA---G-TCAT-A--C-TCA--A---A-CTTTCA-C-T-TGT--CTG-Acggacaagtg
gi|83926 : ggacaataagtttttcatTCGGGCAA---G-T--A-A--C-TCA--AC-TA-TT--CA-A-C-TGT--CCG-Acggacaagtg
gi|83921 : ggacaagcaagtttatcat--CA-C-T-TGC--CCG-ATC-GGA-CA-AGTGcggaccaagtg
gi|83920 : ggacaagtgaaagcccagttcggacaagtgaaactcgataca--CA-C-T-TGC--CCG-ATC-GGA-CA-AGTG
gi|83914 : ggacaagtgaaagcccagttcggacaagtgaaactcgataca--CA-C-T-TGC--CCG-ATC-GGA-CA-AGTG
gi|83917 : ggacaagtaaaagcccggttcggacaagtgaaactcgatacc--CA-C-T-TAC--CCG-ATC-GGA-CA-AGTG
gi|83905 : ggacaagtgaaaacccagttcggacaagtgaaactcgataca--CA-C-T-TGC--CCG-ATC-GGA-CA-AGTG
gi|83915 : ggacaagtaaaagcctgcttcggacaagtgaaactcgatacc--CA-C-T-TGC--CCG-ATC-GGA-CA-AGTG
gi|83902 : gaacaagtaaaagcccggttcggacaagtgaaagctcgataccc--CA-C-T-TGT--CC--ATC-GGG-CA-AGT
gi|83903 : ggacaagtaagtgtttcattcggacaagtgaaagtttgagtat--CA-C-T-TGT--CC--ATC-GGG-CA-AGT
gi|83904 : ggacaagtaagtttttcattcggacaagtgaaagtttgagtat--CA-C-T-TGT--CCG--TC-GGG-CA-AGT
gi|83913 : ggacaagtaagtttttcattcggacaagtgaaagtttgagtat--CA-C-T-TGT--CCG--TC-GGG-CA-AGT
gi|83925 : ggacaataagtttttcattcagacaagtgaaagtttgagtatgA-C-T-TGC--CCG-ATC-GGA-CA-AGTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|83922 ): GGACAAGCAAGTTTTTCATTTGAACAAGTGGAAGTTTCAGTGCACTTGCCCGAAGGACAAG
Alignments
lowQualScore : 5555555555555555 33333333333333333333 11
lowQualScore : 6 9999999999999999 1 1 22222222222222222222 1 1 1 11 1 66 1 2
lowQualScore : . ................ . . .................... . . . .. . .. . .
lowQualScore : 9 2222222222222222 3 3 33333333333333333333 3 3 3 88 3 44 4 9
consensus : GGACAAGT-AAA-G--TTTTTCA--G-TTCGGACAAG-TGAA-AG-TTCG--A--TA-CT--C-A-C-T-TGC--CCG-ATCGGG-CA-AGTG
Reference ( family-635 ) : GGACAAGT-AAA-G--TC---CA--G-TTCGGACAAG-TGAA-A--CTCG--A--TA-CT--C-A-C-T-TGT--CCG-ATCGGG-CA-AGTG
gi|83902 : GGACAAGT-AAGTG--TT---TC--A-TTCGGACAAG-TGAA-AG-TTTG--AG-TA-----T-A-C-T-TGC--CCG-AT-GGA-CA-AGTG
gi|83903 : GGACAAGT-AA--G--TTTTTCA----TTCGGACAAG-TGAA-AG-TTTG--AG-TA-----T-A-C-T-TGC--CCG-AT-GGA-CA-AGTG
gi|83904 : GGACAAGT-AA--G--TTTTTCA----TTCGGACAAG-TGAA-AG-TTTG--AG-TA-----T-A-C-T-TGC--CCG-A-CGGA-CA-AGTG
gi|83905 : GGACAAGT-AAA-A--GC---CT--GCTTCGGACAAG-TGAA-A--CTCG--A--TA-CC--C-A-C-T-TGT--CCG-ATCGGG-CA-AGTG
gi|83906 : GGACAAGT-AA--G--TTTTTCA----TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT------C-T-TGC--CCG-A-CGGG-CA-AGTG
gi|83907 : GGACAAGT-AA--G--TTTTTCA----TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT------C-T-TGC--CCG-A-CGGG-CA-AGTG
gi|83908 : GGACAAGT-AA--G--TTTTTCA----TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT------C-T-TGC--CCG-A-CGGG-CA-AGTG
gi|83909 : GGACAAGTGAAA-G--CC---CA--G-TTCGGACAAG-TGAA-A--CTCG--A--TA-CT--C-A-C-T-TGT--CCG-ATCGGG-CA-AGTG
gi|83910 : GGACAAGT-AA--G--TTTTTCA----TTCGGACAAG-TGAA-A--GTTG--G--AG-TT--T-A-C-T-TGC--CCA-A-AGAA-CA-AGTG
gi|83911 : GGACAAGT-AA--G--TTTTTCA----TTCAGACAAG-TGAA-AG-TTTG--AG-TA-----T-A-C-T-TGC--CCG-AC--GG-CACAGTG
gi|83912 : GGACAAGT-AA--G--TTTTTCA----TTCAGACAAG-TGAA-AG-TTTG--AG-TA-----T-A-C-T-TGC--CCG-AC--GG-CACAGTG
gi|83913 : GGACAA-T-AA--G--TTTTTCA----TTCAGACAAG-TGAA-AG-TTTG--AG-TA--T--G-A-C-T-TGC--CCG-A-CGGA-CA-AGTG
gi|83914 : GGACAAGT-AAAAG--CC---CG--G-TTCGGACAAG-TGAA-A--CTCG--A--TA-CC--C-A-C-T-TGT--CCG-ATCGGG-CA-AGTG
gi|83915 : GAACAAGT-AAAAG--CC---CG--G-TTCGGACAAG-TGAA-AG-CTCG--A--TA-CC--CCA-C-T-TGT--CCG-ATCGGG-CA-AGTG
gi|83916 : GGACAAGT-AA--G--TTTTTCA--A-T-CGGACAAG-TGAA-A--GTTA--G--AG-TT--T-A-C-T-TGC--CCG-A-AGGA-CA-AGTG
gi|83916 : -G--TC---C-----TTCGGGCAAG-T-AA-A--CTCT--A---A-CTTTC-A-C-T-TGT--CCG-ATTG
gi|83917 : ggacaagtaagtttttGGACAAGTGAAA-A--CC---CA--G-TTCGGACAAG-TGAA-A--CTCG--A--TA-CA--C-A-C-T-TGT--CCG-ATCGGG-TA-AGTGaagtg
gi|83918 : GGACAGGT-AA--G--TTTTTCA----TTCGGACAAG-TGAA-AG-TTTG--AGTTA-----T-A-C-TGTGCGGCCG-AT-GGA-CA-AGT
gi|83919 : GGACAAGT-AA--G--TTTTTCA----TTCGGAGAAG-TGAA-A--GTTT-----TAGTT--T-A-C-T-TGC--CCG-A
gi|83920 : GGACAAGTGAAA-G--CC---CA--G-TTCGGACAAG-TGAA-A--CTCG--A--TA-CA--C-A-C-T-TGT--CCG-ATCGGG-CA-AGTGaagacgagtg
gi|83921 : GGACAAGTGAAA-G--CC---CA--G-TTCGGACAAG-TGAA-A--CTCG--A--TA-CA--C-A-C-T-TGT--CCG-ATCGGG-CA-AGTG
gi|83922 : GGACAAGC-AA--G--TTTTTCA----TTTGAACAAG-TGGA-AGTTTCA--G--TG-----C-A-C-T-TGC--CCG-A-AGGA-CA-AG
gi|83923 : GGACAAGT-GAA-GAGCC---CA--G-TT-GGACAAG-TGAA-T--CTCG--A--TA-CA--C-A-CTT-TGT--CCG-ATC-GG-CA-AGTG
gi|83924 : GGACAGGT-AAA-A--TA---TAC-A-TTCGGACAAG-TAAC-A--TTTG--G--TG-GC--A-G-C-T-TGT--CCG-AT-GGA-CA-AGTG
gi|83925 : GGACAAGTGAAA-A--CC---CA--G-TTCGGGCAAG-TGAA-A--CTCA--A--TA-CA--C-A-C-T-TGT--CCG-ATCGGG-CA-AGT
gi|83926 : GGACAAGC-AA--G--TT---TATCA-TTCGGACAGT-TGAATA--GTTG------A-GT--T-A-C-T-TGC--CCG-A-CGGACCA-AGTG
gi|83927 : GGACAAGT-AAA-A--TA---TAC-A-TTCGGACAAG-TAAC-A--TTTG--A--TG--T--C-AGC-T-TGT--CCT-AT-GGA-CA-AGTG
gi|83928 : GGACAAGT-GAT-A--TA---TAC-A-TTCGGACAAG-TAGC-A--TTTG--G--TG-GC--A-G-C-T-TGT--CCG-AT-GGA-CA-AGTG
gi|83929 : GGCCAGTT-AAA-G--TTTTTCA----TTCGGACAAGTTGAA-AGTTTCAGTA--TA-CT--------T-TG---CCGTATTGGA-CA-AGTG
gi|83930 : gGGACAAGT-AAA-A--TA---TAC-A-TTTGGACAAG-TAAC-A--TTTG--G--TG-GC--A-G-C-T-TGT--CCG-A-CGGA-CA-AGTG
gi|83931 : -TTTGGACAAA-T-AA-A--CTCA--A---A-CTTTC-A-C-T-TGT--CCG-A
Alignments
lowQualScore : 222222222222 33333333 11
lowQualScore : 6 999999999999 1 1 77 1 11 22222222 1 1 1 11 88 1 2
lowQualScore : . ............ . . .. . .. ........ . . . .. .. . .
lowQualScore : 9 111111111111 3 3 33 9 88 55555555 3 3 3 88 44 4 8
consensus : GGACAAGT-AA-A-GTTTTTCA-TTCGGACAAG-TGAA-AG-TTCG--A--TA-CTCA-C-T-TGC--CCGATCGGG-CA-AGTG
Reference ( family-635 ) : GGACAAGT-AA-A-GTTTTTCAGTTCGGACAAG-TGAA-AG-TTCG--A--TA-CTCA-C-T-TGC--CCGATCGGG-CA-AGTG
gi|83902 : GGACAAGT-AA---GTGTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAT-GGA-CA-AGTG
gi|83903 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAT-GGA-CA-AGTG
gi|83904 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGA-CGGA-CA-AGTG
gi|83905 : GGACAAGT-AA-A-AGCCTGC--TTCGGACAAG-TGAA-A--CTCG--A--TA-CCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83906 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83907 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83908 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83909 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CTCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83910 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTGG--A---G-TTTA-C-T-TGC--CCAA-AGAA-CA-AGTG
gi|83911 : GGACAAGT-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAC--GG-CACAGTG
gi|83912 : GGACAAGT-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAC--GG-CACAGTG
gi|83913 : GGACAA-T-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTG--AG-TA--TGA-C-T-TGC--CCGA-CGGA-CA-AGTG
gi|83914 : GGACAAGT-AA-AAGCC---CGGTTCGGACAAG-TGAA-A--CTCG--A--TA-CCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83915 : GAACAAGT-AA-AAGCC---CGGTTCGGACAAG-TGAA-AG-CTCG--A--TACCCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83916 : GGACAAGT-AA---GTTTTTCAAT-CGGACAAG-TGAA-AG-TTAG--A---G-TTTA-C-T-TGC--CCGA-AGGA-CA-AGTG
gi|83917 : GGACAAGTGAA-A-ACC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CACA-C-T-TGT--CCGATCGGG-TA-AGTG
gi|83918 : GGACAGGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AGTTA---TA-C-TGTGCGGCCGAT-GGA-CA-AGT
gi|83919 : GGACAAGT-AA---GTTTTTCA-TTCGGAGAAG-TGAA-AG-TTTT--A---G-TTTA-C-T-TGC--CCGA
gi|83920 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CACA-C-T-TGT--CCGATCGGG-CA-AGTGaagacgagtg
gi|83921 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CACA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83922 : GGACAAGC-AA---GTTTTTCA-TTTGAACAAG-TGGA-AGTTTCA--G--TG---CA-C-T-TGC--CCGA-AGGA-CA-AG
gi|83923 : GGACAAGT-GA-A-GAGCC-CAGTT-GGACAAG-TG-A-AT-CTCG--A--TA-CACA-CTT-TGT--CCGATC-GG-CA-AGTG
gi|83924 : GGACAGGT-AA-A-ATATA-CA-TTCGGACAAG-T-AA-CA-TTTG--G--TG-GCAG-C-T-TGT--CCGAT-GGA-CA-AGTG
gi|83925 : GGACAAGTGAA-A-ACC---CAGTTCGGGCAAG-TGAA-A--CTCA--A--TA-CACA-C-T-TGT--CCGATCGGG-CA-AGT
gi|83926 : GGACAAGC-AA---GTTTATCA-TTCGGACAGT-TGAATAG-TT-G--A--G---TTA-C-T-TGC--CCGA-CGGACCA-AGTG
gi|83927 : GGACAAGT-AA-A-ATATA-CA-TTCGGACAAG-T-AA-CA-TTTG--A--TG--TCAGC-T-TGT--CCTAT-GGA-CA-AGTG
gi|83928 : GGACAAGT-GATA---TATACA-TTCGGACAAG-T-AG-CA-TTTG--G--TG-GCAG-C-T-TGT--CCGAT-GGA-CA-AGTG
gi|83929 : GGCCAGTT-AA-A-GTTTTTCA-TTCGGACAAGTTGAA-AGTTTCAGTA--TA-CT-----T-TGC--CGTATTGGA-CA-AGTG
gi|83930 : gGGACAAGT-AA-A-A-TATACA-TTTGGACAAG-T-AA-CA-TTTG--G--TG-GCAG-C-T-TGT--CCGA-CGGA-CA-AGTG
gi|83931 : A-A-ATTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--A---G-TTTA-T-T-TGT--CCAA-AGTA-CA-AGTG
Alignments
lowQualScore : 222222222 33333333 11
lowQualScore : 6 000000000 9 1 1 77 1 11 00000000 1 1 1 11 88 1 2
lowQualScore : . ......... . . . .. . .. ........ . . . .. .. . .
lowQualScore : 9 777777777 3 3 3 33 9 88 99999999 3 3 3 88 44 4 8
consensus : GGACAAGT-AA-A-GTTTTTCA-TTCGGACAAG-TGAA-AG-TTCG--A--TA-CTCA-C-T-TGC--CCGATCGGG-CA-AGTG
Reference ( family-635 ) : GGACAAGT-AA-A-GTTTTTCA-TTCGGACAAG-TGAA-AG-TTCG--A--TA-CTCA-C-T-TGC--CCGATCGGG-CA-AGTG
gi|83902 : GGACAAGT-AA---GTGTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAT-GGA-CA-AGTG
gi|83903 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAT-GGA-CA-AGTG
gi|83904 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGA-CGGA-CA-AGTG
gi|83905 : GGACAAGT-AA-A-AGCCTGC--TTCGGACAAG-TGAA-A--CTCG--A--TA-CCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83906 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83907 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83908 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AG-TA-TT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83909 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CTCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83910 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTGG--A---G-TTTA-C-T-TGC--CCAA-AGAA-CA-AGTG
gi|83911 : GGACAAGT-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAC--GG-CACAGTG
gi|83912 : GGACAAGT-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTG--AG-TA---TA-C-T-TGC--CCGAC--GG-CACAGTG
gi|83913 : GGACAA-T-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTG--AG-TA--TGA-C-T-TGC--CCGA-CGGA-CA-AGTG
gi|83914 : GGACAAGT-AA-AAGCC---CGGTTCGGACAAG-TGAA-A--CTCG--A--TA-CCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83915 : GAACAAGT-AA-AAGCC---CGGTTCGGACAAG-TGAA-AG-CTCG--A--TACCCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83916 : GGACAAGT-AA---GTTTTTCA-ATCGGACAAG-TGAA-AG-TTAG--A---G-TTTA-C-T-TGC--CCGA-AGGA-CA-AGTG
gi|83917 : GGACAAGTGAA-A-ACC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CACA-C-T-TGT--CCGATCGGG-TA-AGTG
gi|83918 : GGACAGGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--AGTTA---TA-C-TGTGCGGCCGAT-GGA-CA-AGT
gi|83919 : GGACAAGT-AA---GTTTTTCA-TTCGGAGAAG-TGAA-AG-TTTT--A---G-TTTA-C-T-TGC--CCGA
gi|83920 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CACA-C-T-TGT--CCGATCGGG-CA-AGTGaagacgagtg
gi|83921 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCG--A--TA-CACA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83922 : GGACAAGC-AA---GTTTTTCA-TTTGAACAAG-TGGA-AGTTTCA--G--TG---CA-C-T-TGC--CCGA-AGGA-CA-AG
gi|83923 : GGACAAGT-GA-A-GAGCC-CA-GTTGGACAAG-TG-A-AT-CTCG--A--TA-CACA-CTT-TGT--CCGATC-GG-CA-AGTG
gi|83924 : GGACAGGT-AA-A-ATATA-CA-TTCGGACAAG-T-AA-CA-TTTG--G--TG-GCAG-C-T-TGT--CCGAT-GGA-CA-AGTG
gi|83925 : GGACAAGTGAA-A-ACC---CAGTTCGGGCAAG-TGAA-A--CTCA--A--TA-CACA-C-T-TGT--CCGATCGGG-CA-AGT
gi|83926 : GGACAAGC-AA---GTTTATCA-TTCGGACAGT-TGAATAG-TT-G------A-GTTA-C-T-TGC--CCGA-CGGACCA-AGTG
gi|83927 : GGACAAGT-AA-A-ATATA-CA-TTCGGACAAG-T-AA-CA-TTTG--A--TG--TCAGC-T-TGT--CCTAT-GGA-CA-AGTG
gi|83928 : GGACAAGT-GATA---TATACA-TTCGGACAAG-T-AG-CA-TTTG--G--TG-GCAG-C-T-TGT--CCGAT-GGA-CA-AGTG
gi|83929 : GGCCAGTT-AA-A-GTTTTTCA-TTCGGACAAGTTGAA-AGTTTCAGTA--TA-CT-----T-TGC--CGTATTGGA-CA-AGTG
gi|83930 : gGGACAAGT-AA-A-ATATA-CA-TTTGGACAAG-T-AA-CA-TTTG--G--TG-GCAG-C-T-TGT--CCGA-CGGA-CA-AGTG
gi|83931 : A-A-ATTTTTCA-TTCGGACAAG-TGAA-AG-TTTG--A---G-TTTA-T-T-TGT--CCAA-AGTA-CA-AGTG
blockSeqs : G AAGCCTG G T T GT T GT TACCCC G T G GG TC C C
blockSeqs : G AGTTTTT G . . GT T . TACCC . . . . TC . C
blockSeqs : G AATTTTT G . . G C . GTATT . . . . TC . .
blockSeqs : G GTTTTT G . . G T . GTATT . . . . TC . .
blockSeqs : G GTTTTT G . . G T . GTATT . . . . TC . .
blockSeqs : . GTTTTT G . . G T . TACTC . . . . TC . .
blockSeqs : . GTTTTT G . . G C . GTATG . . . . TC . .
blockSeqs : . GTTTTT . . . G G . TACCC . . . . TC . .
blockSeqs : . GTTTTT . . . G T . TACAC . . . . TC . .
blockSeqs : . GTTTTT . . . G T . GTTAT . . . . TT . .
blockSeqs : . GTTTTT . . . G T . TACAC . . . . T . .
blockSeqs : . GTTTTT . . . G C . TACAC . . . . C . .
blockSeqs : . GTTTTT . . . G C . TACAC . . . . C . .
blockSeqs : . GTTTTT . . . G A . TGGCA . . . . C . .
blockSeqs : . GTTTTT . . . G C . TACAC . . . . C . .
blockSeqs : . GTTTTT . . . T T . TGGCA . . . . A . .
blockSeqs : . AGAGCC . . . A T . TGGCA . . . . C . .
blockSeqs : . AATATA . . . G C . GTAT . . . . C . .
blockSeqs : . GTTTAT . . . A C . GTAT . . . . C . .
blockSeqs : . AATATA . . . A C . GTTT . . . . A . .
blockSeqs : . TATATA . . . A C . GTAT . . . . T . .
blockSeqs : . AATATA . . . G T . GTAT . . . . A . .
blockSeqs : . AAGCC . . . . C . GTTT . . . . T . .
blockSeqs : . AAGCC . . . . T . GTTT . . . . C . .
blockSeqs : . AGCC . . . . T . AGTT . . . . T . .
blockSeqs : . AACC . . . . C . TGTC . . . . T . .
blockSeqs : . AGCC . . . . T . TACT . . . . C . .
blockSeqs : . AGCC . . . . T . GTTT . . . . A . .
blockSeqs : AACC . . . . . . TGC . . . .
blockSeqCons : TNCNC***
originalCons : GGACAAGT-AA-A-GTTTTTCA-TTCGGACAAG-TGAA-AG-TTCG--A--TA-CTCA-C-T-TGC--CCGATCGGG-CA-AGTG
finalCons : GGACAAGT-AA-A-GTTTTTCA-TTCGGACAAG-TGAA-AG-TTCG--ATNCNC---A-C-T-TGC--CCGATCGGG-CA-AGTG
Alignments
lowQualScore : 222222222 2222222 11
lowQualScore : 6 000000000 9 1 1 66 1 5555555 4 1 1 11 88 1 2
lowQualScore : . ......... . . . .. . ....... . . . .. .. . .
lowQualScore : 9 777777777 3 3 3 00 6 6666666 0 3 3 88 44 4 8
consensus : GGACAAGT-AA-A-GTTTTTCA-TTCGGACAAG-TGAA-AG-TTCGA-T-GTNCA-C-T-TGC--CCGATCGGG-CA-AGTG
Reference ( family-635 ) : GGACAAGT-AA-A-GTTTTTCA-TTCGGACAAG-TGAA-AG-TTCGA-T-NCNCA-C-T-TGC--CCGATCGGG-CA-AGTG
gi|83902 : GGACAAGT-AA---GTGTTTCA-TTCGGACAAG-TGAA-AG-TTTGA---GTATA-C-T-TGC--CCGAT-GGA-CA-AGTG
gi|83903 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTGA---GTATA-C-T-TGC--CCGAT-GGA-CA-AGTG
gi|83904 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTGA---GTATA-C-T-TGC--CCGA-CGGA-CA-AGTG
gi|83905 : GGACAAGT-AA-A-AGCCTGC--TTCGGACAAG-TGAA-A--CTCGA-T-ACCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83906 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTGAGT-ATT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83907 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTGAGT-ATT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83908 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTGAGT-ATT---C-T-TGC--CCGA-CGGG-CA-AGTG
gi|83909 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCGA-T-ACTCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83910 : GGACAAGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTGGA---GTTTA-C-T-TGC--CCAA-AGAA-CA-AGTG
gi|83911 : GGACAAGT-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTGA---GTATA-C-T-TGC--CCGAC--GG-CACAGTG
gi|83912 : GGACAAGT-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTGA---GTATA-C-T-TGC--CCGAC--GG-CACAGTG
gi|83913 : GGACAA-T-AA---GTTTTTCA-TTCAGACAAG-TGAA-AG-TTTGA-G-TATGA-C-T-TGC--CCGA-CGGA-CA-AGTG
gi|83914 : GGACAAGT-AA-AAGCC---CGGTTCGGACAAG-TGAA-A--CTCGA-T-ACCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83915 : GAACAAGT-AA-AAGCC---CGGTTCGGACAAG-TGAA-AG-CTCGA-TACCCCA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83916 : GGACAAGT-AA---GTTTTTCA-ATCGGACAAG-TGAA-AG-TTAGA---GTTTA-C-T-TGC--CCGA-AGGA-CA-AGTG
gi|83917 : GGACAAGTGAA-A-ACC---CAGTTCGGACAAG-TGAA-A--CTCGA-T-ACACA-C-T-TGT--CCGATCGGG-TA-AGTG
gi|83918 : GGACAGGT-AA---GTTTTTCA-TTCGGACAAG-TGAA-AG-TTTGA-G-TTATA-C-TGTGCGGCCGAT-GGA-CA-AGT
gi|83919 : GGACAAGT-AA---GTTTTTCA-TTCGGAGAAG-TGAA-AG-TTTTA---GTTTA-C-T-TGC--CCGA
gi|83920 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCGA-T-ACACA-C-T-TGT--CCGATCGGG-CA-AGTGaagacgagtg
gi|83921 : GGACAAGTGAA-A-GCC---CAGTTCGGACAAG-TGAA-A--CTCGA-T-ACACA-C-T-TGT--CCGATCGGG-CA-AGTG
gi|83922 : GGACAAGC-AA---GTTTTTCA-TTTGAACAAG-TGGA-AG-TTTCA---GTGCA-C-T-TGC--CCGA-AGGA-CA-AG
gi|83923 : GGACAAGT-GA-A-GAGCC-CA-GTTGGACAAG-TG-A-AT-CTCGA-T-ACACA-CTT-TGT--CCGATC-GG-CA-AGTG
gi|83924 : GGACAGGT-AA-A-ATATA-CA-TTCGGACAAG-T-AA-CA-TTTGG-T-G-GCAGC-T-TGT--CCGAT-GGA-CA-AGTG
gi|83925 : GGACAAGTGAA-A-ACC---CAGTTCGGGCAAG-TGAA-A--CTCAA-T-ACACA-C-T-TGT--CCGATCGGG-CA-AGT
gi|83926 : GGACAAGC-AA---GTTTATCA-TTCGGACAGT-TGAATAG-TTGAG-T-T---A-C-T-TGC--CCGA-CGGACCA-AGTG
gi|83927 : GGACAAGT-AA-A-ATATA-CA-TTCGGACAAG-T-AA-CA-TTTGA-T-GTCAG-C-T-TGT--CCTAT-GGA-CA-AGTG
gi|83928 : GGACAAGT-GATA---TATACA-TTCGGACAAG-T-AG-CA-TTTGG-T-G-GCAGC-T-TGT--CCGAT-GGA-CA-AGTG
gi|83929 : GGCCAGTT-AA-A-GTTTTTCA-TTCGGACAAGTTGAA-AGTTTCAG-T-ATAC--T-T-TGC--CGTATTGGA-CA-AGTG
gi|83930 : gGGACAAGT-AA-A-ATATA-CA-TTTGGACAAG-T-AA-CA-TTTGG-T-G-GCAGC-T-TGT--CCGA-CGGA-CA-AGTG
gi|83931 : A-A-ATTTTTCA-TTCGGACAAG-TGAA-AG-TTTGA---GTTTA-T-T-TGT--CCAA-AGTA-CA-AGTG