lowQualScore                  :                                                                                                                                                        11111111      1111111      1111111111    111111  1111111111           
lowQualScore                  :     6    66  1       2        1   1    1  22 33333 1   3  1  88888 6  3 1  1 444 1   1  1    3 1 1 222  1 1 1  1    66   1   2 44  2  2       66   66  55555555   3  3333333      7777777777    222222  7777777777    4      
lowQualScore                  :     .    ..  .       .        .   .    .  .. ..... .   .  .  ..... .  . .  . ... .   .  .    . . . ...  . . .  .    ..   .   . ..  .  .       ..   ..  ........   .  .......      ..........    ......  ..........    .      
lowQualScore                  :     5    33  5       2        4   4    4  00 66666 4   0  5  33333 7  0 5  5 111 5   6  6    2 6 7 999  7 7 7  7    55   9   4 22  7  7       33   33  99999999   6  0000000      0000000000    888888  1111111111    4      
consensus                     :  ATATGGAAN-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CA-------CAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( gi|121089 )       :  ATACGGAAA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CA-------TAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090                     :  ATATGCAGA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-T-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CA-------TAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091                     :  ATATGGAAT-GA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TAC-GA-CCCT-AAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--GTCA-CA--------AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092                     :  ATATAGAAT-GA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CA-------CAAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121094                     :  ATATCGAAA-GA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CA-------TA
gi|121095                     :  ATATTGAAA-GA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA--GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CA-------CACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096                     :  ATATGGAAA-GAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCTAA-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121098                     :  ATATAGAAA-AA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TA-------CAAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099                     :  ACATGGAAT-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100                     :  ATATAGAAT-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TAC-GA-CCCC-A-G-C---GA-G-T-CT-TCAT--CAG-GT
gi|121103                     :  ATATAGAAT-GA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TAC-GA-CCCTAA-G-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCA-------CAAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121101                     :  ATATAGAAT-GA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TAC-GA-CACT-A-G-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TAGCTAGTCTGAA-AA-------TATA
gi|121104                     :  ATATAGAAT-AA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGC-GA-CCCT-A-G-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105                     :  ATATGGAAT-GA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT---G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106                     :  ATAAAGAAT-AA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TAC-GA-CCCT-A-G-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107                     :  ATATAGAAT-GA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121109                     :  ATATGGAAA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121102                     :  ATATAGAAT-GA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-
gi|121110                     :    ATGAAGA-GA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CA-------CAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121097                     :      GGAAA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TAC-GA-CCCT-A-G-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121112                     : atattGAAGA-GA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121093                     :      tGAAT-GA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TAC-GA-TCCC-A-G-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CA-------CAAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121111                     :  acataGAAA-GA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTTAAT-TT-AT-AGAG--------------AC-GACCCCT-A-G-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121108                     :      taAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-CG-GA--C-T-AG-C---T-TAC-GA-CCAT-A-A-C---GT-G-T-C
gi|121113                     :        atattA-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGC-GA--CCT-A-G-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114                     :             A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TAC-GA-CCCT-A-
gi|121115                     :              -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TAC-G--CCCT-A-GAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TA-------CAAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116                     :                AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TAC-AA-CCCT-T-G-T---GG-G-T-CT-TCAT--CA
gi|121117                     :                         TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CA
gi|121118                     :                                                                      C-T-AG-C---T-TAC-GA-CCAT-A-G-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CA-------CAAA-





Alignments
lowQualScore                  :                                                                                                                                                              1111111      1111111111    111111    11111111           
lowQualScore                  :     22   1  1       1        1   1    1  11 33333 1   1  1  99999    2 1  1 333 1    1 1    4  1 222  1 1 1  1    66   1   2 2   2  2       55   33   3   3  3333333      4444444444    111111  2 44444444    4      
lowQualScore                  :     ..   .  .       .        .   .    .  .. ..... .   .  .  .....    . .  . ... .    . .    .  . ...  . . .  .    ..   .   . .   .  .       ..   ..   .   .  .......      ..........    ......  . ........    .      
lowQualScore                  :     11   0  5       8        4   4    4  99 44444 4   4  4  11111    9 4  4 999 5    5 5    6  6 888  6 6 6  7    22   8   2 2   5  5       99   44   3   6  0000000      4444444444    555555  5 55555555    0      
consensus                     : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( family-628 )      : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121089                     : ATAC-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090                     : ATAT-GCAGAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-TG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091                     : ATAT-GGAATGA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--G-T--CACAAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121093                     : ACAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TACG-A-TCCC-AG-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121094                     : ATAT-CGAAAGA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CAT-A
gi|121095                     : ATAT-TGAAAGA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA-G-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CAC-ACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096                     : ATAT-GGAAAGAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121097                     : ATATTGGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TACG-A-CCCT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121098                     : ATAT-AGAAAAA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TAC-AAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099                     : ACAT-GGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100                     : ATAT-AGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TACG-A-CCCC-AG-C---GA-G-T-CT-TCAT--CAG-GT
gi|121101                     : ATAT-AGAATGA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TACG-A-CACT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TA
gi|121102                     : ATAT-AGAATGA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-gctagtctgaaaatata
gi|121103                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TACG-A-CCCTAAG-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCAC-AAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121104                     : ATAT-AGAATAA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGCG-A-CCCT-AG-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105                     : ATAT-GGAATGA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT--G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106                     : ATAA-AGAATAA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TACG-A-CCCT-AG-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121108                     : ATAT-TAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-C---GGAC-T-AG-C---T-TACG-A-CCAT-AA-C---GT-G-T-C
gi|121109                     : ATAT-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121110                     :   AT-GAAGAGA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121111                     :    T-AGAAAGA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTT-AA-TT-TA-TAG-----AG--------ACG-ACCCCT-AG-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121112                     :    T-GAAGAGA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121113                     :            A-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGCG-A--CCT-AG-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114                     :            A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TACG-A-CCCT-A
gi|121115                     :             -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TACG---CCCT-AGAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TAC-AAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116                     :               AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TACA-A-CCCT-TG-T---GG-G-T-CT-TCAT--CA
gi|121117                     :                        TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CA
gi|121118                     :                                                                     C-T-AG-C---T-TACG-A-CCAT-AG-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CAC-AAA-





Alignments
lowQualScore                  :                                                                                                                                                              1111111      1111111111    111111    11111111           
lowQualScore                  :     22   1  1       1        1   1    1  11 33333 1   1  1  99999    2 1  1 333 1    1 1    4  1 222  1 1 1  1    66   1   2 33  2  2       55   33   3   3  3333333      4444444444    111111  2 44444444    4      
lowQualScore                  :     ..   .  .       .        .   .    .  .. ..... .   .  .  .....    . .  . ... .    . .    .  . ...  . . .  .    ..   .   . ..  .  .       ..   ..   .   .  .......      ..........    ......  . ........    .      
lowQualScore                  :     11   0  5       8        4   4    4  99 44444 4   4  4  11111    9 4  4 999 5    5 5    6  6 888  6 6 6  7    22   8   2 33  5  5       99   44   3   6  0000000      4444444444    555555  5 55555555    0      
consensus                     : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( family-628 )      : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121089                     : ATAC-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090                     : ATAT-GCAGAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-TG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091                     : ATAT-GGAATGA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--G-T--CACAAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121093                     : ACAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TACG-A-TCCC-AG-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121094                     : ATAT-CGAAAGA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CAT-A
gi|121095                     : ATAT-TGAAAGA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA-G-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CAC-ACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096                     : ATAT-GGAAAGAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121097                     : ATATTGGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TACG-A-CCCT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121098                     : ATAT-AGAAAAA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TAC-AAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099                     : ACAT-GGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100                     : ATAT-AGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TACG-A-CCCC-AG-C---GA-G-T-CT-TCAT--CAG-GT
gi|121101                     : ATAT-AGAATGA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TACG-A-CACT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TA
gi|121102                     : ATAT-AGAATGA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-gctagtctgaaaatata
gi|121103                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TACG-A-CCCTAAG-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCAC-AAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121104                     : ATAT-AGAATAA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGCG-A-CCCT-AG-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105                     : ATAT-GGAATGA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT--G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106                     : ATAA-AGAATAA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TACG-A-CCCT-AG-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121108                     : ATAT-TAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-C---GGAC-T-AG-C---T-TACG-A-CCAT-AA-C---GT-G-T-C
gi|121109                     : ATAT-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121110                     :   AT-GAAGAGA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121111                     :    T-AGAAAGA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTT-AA-TT-TA-TAG-----AG--------ACG-ACCCCT-AG-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121112                     :    T-GAAGAGA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121113                     :            A-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGCG-A--CCT-AG-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114                     :            A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TACG-A-CCCT-A
gi|121115                     :             -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TACG---CCCT-AGAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TAC-AAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116                     :               AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TACA-A-CCCT-TG-T---GG-G-T-CT-TCAT--CA
gi|121117                     :                        TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CA
gi|121118                     :                                                                     C-T-AG-C---T-TACG-A-CCAT-AG-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CAC-AAA-


blockSeqs                     :     TG   A  A       A        T   A    T  TG GTATC T   T  A  ACAG     T A  A TTT C    G C    A  A GGG  C T C  A    CG   A   A AA  G  A       TG   TC   A   C  TACGTGT      TAACATGT      CACGAT  G TATGAAAA    G
blockSeqs                     :     G    T  .       A        .   .    .  .  .     .   .  .  ACAG     A .  . A   .    . .    A  . .    . . .  .    TA   .   . G   .  .       A    .    .   .  .            TGC           .       G .           .
blockSeqs                     :     G    T  .       A        .   .    .  .  .     .   .  .  CCG      . .  . .   .    . .    A  . .    . . .  .    A    .   . G   .  .       .    .    .   .  .            T             .       G .           .
blockSeqs                     :     A    T  .       A        .   .    .  .  .     .   .  .  CAG      . .  . .   .    . .    .  . .    . . .  .    .    .   . A   .  .       .    .    .   .  .            T             .       G .           .
blockSeqs                     :     A    A  .       T        .   .    .  .  .     .   .  .  CAG      . .  . .   .    . .    .  . .    . . .  .    .    .   . A   .  .       .    .    .   .  .            T             .       T .           .
blockSeqs                     :     C    A  .       A        .   .    .  .  .     .   .  .  CCG      . .  . .   .    . .    .  . .    . . .  .    .    .   . G   .  .       .    .    .   .  .            T             .       G .           .
blockSeqs                     :     T    A  .       A        .   .    .  .  .     .   .  .  CCG      . .  . .   .    . .    .  . .    . . .  .    .    .   . G   .  .       .    .    .   .  .            T             .       G .           .
blockSeqs                     :     G    A  .       A        .   .    .  .  .     .   .  .  CCG      . .  . .   .    . .    .  . .    . . .  .    .    .   . A   .  .       .    .    .   .  .            T             .       . .           .
blockSeqs                     :     A    A  .       T        .   .    .  .  .     .   .  .  CCG      . .  . .   .    . .    .  . .    . . .  .    .    .   . A   .  .       .    .    .   .  .            .             .       . .           .
blockSeqs                     :     G    T  .       A        .   .    .  .  .     .   .  .  CCG      . .  . .   .    . .    .  . .    . . .  .    .    .   . A   .  .       .    .    .   .                                                    
blockSeqs                     :     A    T  .       A        .   .    .  .  .     .   .  .  CGG      . .  . .   .    . .    .  . .    . . .  .    .    .   . A   .  .       .    .    .                                                        
blockSeqs                     :     A    T  .       T        .   .    .  .  .     .   .  .  CAG      . .  . .   .    . .    .  . .    . . .  .    .    .   . G   .  .       .    .                                                             
blockSeqs                     :     A    T  .       A        .   .    .  .  .     .   .  .  AAG      . .  . .   .    . .    .  . .    . . .  .    .    .   . C   .  .       .    .                                                             
blockSeqs                     :     A    T  .       T        .   .    .  .  .     .   .  .  CCG      . .  . .   .    . .    .  . .    . . .  .    .    .   . A   .  .       .    .                                                             
blockSeqs                     :     A    T  .       A        .   .    .  .  .     .   .  .  TAT      . .  . .   .    . .    .  . .    . . .  .    .    .   . T   .  .       .    .                                                             
blockSeqs                     :     G    T  .       A        .   .    .  .  .     .   .  .  TTC      . .  . .   .    . .    .  . .    . . .  .    .    .   .                                                                                   
blockSeqs                     :     A    T  .       A        .   .    .  .  .     .   .  .  ACA      . .  . .   .    . .    .  . .    . . .  .    .    .   .                                                                                   
blockSeqs                     :     A    T  .       T        .   .    .  .  .     .   .  .  TC       . .  . .   .    . .    .  . .    . . .  .    .    .                                                                                       
blockSeqs                     :     T    T  .       A        .   .    .  .  .     .   .  .  TC       . .  . .   .    . .    .  . .    . . .  .    .    .                                                                                       
blockSeqs                     :     G    A  .       A        .   .    .  .  .     .   .  .  TC       . .  . .   .    . .    .  . .    . . .  .    .    .                                                                                       
blockSeqs                     :     G    A  .       A        .   .    .  .  .     .   .  .  TC       . .  . .   .    . .    .  . .    . . .  .    .    .                                                                                       
blockSeqs                     :     A    A  .       A        .   .    .  .  .     .   .  .  TG       . .  . .   .    . .    .  . .    . . .  .    .                                                                                            
blockSeqs                     :     G    A  .       A        .   .    .  .  .     .   .  .  TA       . .  . .   .    . .    .  . .    . . .  .    .                                                                                            
blockSeqs                     :             .       T        .   .    .  .  .     .   .  .  CG       . .  . .   .    . .    .  . .    . . .                                                                                                    
blockSeqs                     :             .       .        .   .    .  .  .     .   .  .  C        . .  . .   .    . .    .                                                                                                                  
blockSeqs                     :             .       .        .   .    .  .  .     .   .  .  C        . .  . .   .                                                                                                                              
blockSeqs                     :                     .        .   .    .  .  .     .   .  .           . .  . .                                                                                                                                  
blockSeqs                     :                              .   .    .  .  .     .                                                                                                                                                            


blockSeqCons                  : 
originalCons                  : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
finalCons                     : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA





Alignments
lowQualScore                  :                                                                                                                                                              1111111      1111111111    111111    11111111           
lowQualScore                  :     22   1  1       1        1   1    1  11 33333 1   1  1  99999    2 1  1 333 1    1 1    4  1 222  1 1 1  1    66   1   2 33  2  2       55   33   3   3  3333333      4444444444    111111  2 44444444    4      
lowQualScore                  :     ..   .  .       .        .   .    .  .. ..... .   .  .  .....    . .  . ... .    . .    .  . ...  . . .  .    ..   .   . ..  .  .       ..   ..   .   .  .......      ..........    ......  . ........    .      
lowQualScore                  :     11   0  5       8        4   4    4  99 44444 4   4  4  11111    9 4  4 999 5    5 5    6  6 888  6 6 6  7    22   8   2 33  5  5       99   44   3   6  0000000      4444444444    555555  5 55555555    0      
consensus                     : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( family-628 )      : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121089                     : ATAC-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090                     : ATAT-GCAGAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-TG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091                     : ATAT-GGAATGA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--G-T--CACAAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121093                     : ACAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TACG-A-TCCC-AG-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121094                     : ATAT-CGAAAGA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CAT-A
gi|121095                     : ATAT-TGAAAGA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA-G-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CAC-ACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096                     : ATAT-GGAAAGAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121097                     : ATATTGGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TACG-A-CCCT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121098                     : ATAT-AGAAAAA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TAC-AAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099                     : ACAT-GGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100                     : ATAT-AGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TACG-A-CCCC-AG-C---GA-G-T-CT-TCAT--CAG-GT
gi|121101                     : ATAT-AGAATGA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TACG-A-CACT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TA
gi|121102                     : ATAT-AGAATGA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-gctagtctgaaaatata
gi|121103                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TACG-A-CCCTAAG-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCAC-AAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121104                     : ATAT-AGAATAA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGCG-A-CCCT-AG-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105                     : ATAT-GGAATGA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT--G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106                     : ATAA-AGAATAA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TACG-A-CCCT-AG-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107                     : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121108                     : ATAT-TAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-C---GGAC-T-AG-C---T-TACG-A-CCAT-AA-C---GT-G-T-C
gi|121109                     : ATAT-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121110                     :   AT-GAAGAGA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121111                     :    T-AGAAAGA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTT-AA-TT-TA-TAG-----AG--------ACG-ACCCCT-AG-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121112                     :    T-GAAGAGA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121113                     :            A-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGCG-A--CCT-AG-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114                     :            A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TACG-A-CCCT-A
gi|121115                     :             -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TACG---CCCT-AGAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TAC-AAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116                     :               AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TACA-A-CCCT-TG-T---GG-G-T-CT-TCAT--CA
gi|121117                     :                        TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CA
gi|121118                     :                                                                     C-T-AG-C---T-TACG-A-CCAT-AG-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CAC-AAA-