lowQualScore : 11111111 1111111 1111111111 111111 1111111111
lowQualScore : 6 66 1 2 1 1 1 22 33333 1 3 1 88888 6 3 1 1 444 1 1 1 3 1 1 222 1 1 1 1 66 1 2 44 2 2 66 66 55555555 3 3333333 7777777777 222222 7777777777 4
lowQualScore : . .. . . . . . .. ..... . . . ..... . . . . ... . . . . . . ... . . . . .. . . .. . . .. .. ........ . ....... .......... ...... .......... .
lowQualScore : 5 33 5 2 4 4 4 00 66666 4 0 5 33333 7 0 5 5 111 5 6 6 2 6 7 999 7 7 7 7 55 9 4 22 7 7 33 33 99999999 6 0000000 0000000000 888888 1111111111 4
consensus : ATATGGAAN-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CA-------CAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( gi|121089 ) : ATACGGAAA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CA-------TAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090 : ATATGCAGA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-T-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CA-------TAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091 : ATATGGAAT-GA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TAC-GA-CCCT-AAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--GTCA-CA--------AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092 : ATATAGAAT-GA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CA-------CAAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121094 : ATATCGAAA-GA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CA-------TA
gi|121095 : ATATTGAAA-GA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA--GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CA-------CACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096 : ATATGGAAA-GAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCTAA-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121098 : ATATAGAAA-AA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TA-------CAAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099 : ACATGGAAT-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100 : ATATAGAAT-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TAC-GA-CCCC-A-G-C---GA-G-T-CT-TCAT--CAG-GT
gi|121103 : ATATAGAAT-GA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TAC-GA-CCCTAA-G-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCA-------CAAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121101 : ATATAGAAT-GA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TAC-GA-CACT-A-G-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TAGCTAGTCTGAA-AA-------TATA
gi|121104 : ATATAGAAT-AA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGC-GA-CCCT-A-G-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105 : ATATGGAAT-GA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT---G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106 : ATAAAGAAT-AA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TAC-GA-CCCT-A-G-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107 : ATATAGAAT-GA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121109 : ATATGGAAA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121102 : ATATAGAAT-GA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-
gi|121110 : ATGAAGA-GA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CA-------CAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121097 : GGAAA-GA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TAC-GA-CCCT-A-G-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121112 : atattGAAGA-GA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121093 : tGAAT-GA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TAC-GA-TCCC-A-G-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CA-------CAAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121111 : acataGAAA-GA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTTAAT-TT-AT-AGAG--------------AC-GACCCCT-A-G-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121108 : taAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-CG-GA--C-T-AG-C---T-TAC-GA-CCAT-A-A-C---GT-G-T-C
gi|121113 : atattA-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGC-GA--CCT-A-G-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114 : A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TAC-GA-CCCT-A-
gi|121115 : -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TAC-G--CCCT-A-GAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TA-------CAAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116 : AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TAC-AA-CCCT-T-G-T---GG-G-T-CT-TCAT--CA
gi|121117 : TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TAC-GA-CCCT-A-G-C---GG-G-T-CT-TCAT--CA
gi|121118 : C-T-AG-C---T-TAC-GA-CCAT-A-G-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CA-------CAAA-
Alignments
lowQualScore : 1111111 1111111111 111111 11111111
lowQualScore : 22 1 1 1 1 1 1 11 33333 1 1 1 99999 2 1 1 333 1 1 1 4 1 222 1 1 1 1 66 1 2 2 2 2 55 33 3 3 3333333 4444444444 111111 2 44444444 4
lowQualScore : .. . . . . . . .. ..... . . . ..... . . . ... . . . . . ... . . . . .. . . . . . .. .. . . ....... .......... ...... . ........ .
lowQualScore : 11 0 5 8 4 4 4 99 44444 4 4 4 11111 9 4 4 999 5 5 5 6 6 888 6 6 6 7 22 8 2 2 5 5 99 44 3 6 0000000 4444444444 555555 5 55555555 0
consensus : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( family-628 ) : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121089 : ATAC-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090 : ATAT-GCAGAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-TG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091 : ATAT-GGAATGA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--G-T--CACAAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092 : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121093 : ACAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TACG-A-TCCC-AG-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121094 : ATAT-CGAAAGA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CAT-A
gi|121095 : ATAT-TGAAAGA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA-G-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CAC-ACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096 : ATAT-GGAAAGAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121097 : ATATTGGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TACG-A-CCCT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121098 : ATAT-AGAAAAA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TAC-AAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099 : ACAT-GGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100 : ATAT-AGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TACG-A-CCCC-AG-C---GA-G-T-CT-TCAT--CAG-GT
gi|121101 : ATAT-AGAATGA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TACG-A-CACT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TA
gi|121102 : ATAT-AGAATGA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-gctagtctgaaaatata
gi|121103 : ATAT-AGAATGA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TACG-A-CCCTAAG-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCAC-AAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121104 : ATAT-AGAATAA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGCG-A-CCCT-AG-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105 : ATAT-GGAATGA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT--G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106 : ATAA-AGAATAA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TACG-A-CCCT-AG-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107 : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121108 : ATAT-TAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-C---GGAC-T-AG-C---T-TACG-A-CCAT-AA-C---GT-G-T-C
gi|121109 : ATAT-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121110 : AT-GAAGAGA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121111 : T-AGAAAGA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTT-AA-TT-TA-TAG-----AG--------ACG-ACCCCT-AG-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121112 : T-GAAGAGA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121113 : A-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGCG-A--CCT-AG-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114 : A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TACG-A-CCCT-A
gi|121115 : -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TACG---CCCT-AGAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TAC-AAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116 : AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TACA-A-CCCT-TG-T---GG-G-T-CT-TCAT--CA
gi|121117 : TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CA
gi|121118 : C-T-AG-C---T-TACG-A-CCAT-AG-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CAC-AAA-
Alignments
lowQualScore : 1111111 1111111111 111111 11111111
lowQualScore : 22 1 1 1 1 1 1 11 33333 1 1 1 99999 2 1 1 333 1 1 1 4 1 222 1 1 1 1 66 1 2 33 2 2 55 33 3 3 3333333 4444444444 111111 2 44444444 4
lowQualScore : .. . . . . . . .. ..... . . . ..... . . . ... . . . . . ... . . . . .. . . .. . . .. .. . . ....... .......... ...... . ........ .
lowQualScore : 11 0 5 8 4 4 4 99 44444 4 4 4 11111 9 4 4 999 5 5 5 6 6 888 6 6 6 7 22 8 2 33 5 5 99 44 3 6 0000000 4444444444 555555 5 55555555 0
consensus : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( family-628 ) : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121089 : ATAC-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090 : ATAT-GCAGAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-TG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091 : ATAT-GGAATGA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--G-T--CACAAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092 : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121093 : ACAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TACG-A-TCCC-AG-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121094 : ATAT-CGAAAGA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CAT-A
gi|121095 : ATAT-TGAAAGA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA-G-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CAC-ACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096 : ATAT-GGAAAGAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121097 : ATATTGGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TACG-A-CCCT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121098 : ATAT-AGAAAAA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TAC-AAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099 : ACAT-GGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100 : ATAT-AGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TACG-A-CCCC-AG-C---GA-G-T-CT-TCAT--CAG-GT
gi|121101 : ATAT-AGAATGA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TACG-A-CACT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TA
gi|121102 : ATAT-AGAATGA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-gctagtctgaaaatata
gi|121103 : ATAT-AGAATGA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TACG-A-CCCTAAG-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCAC-AAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121104 : ATAT-AGAATAA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGCG-A-CCCT-AG-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105 : ATAT-GGAATGA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT--G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106 : ATAA-AGAATAA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TACG-A-CCCT-AG-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107 : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121108 : ATAT-TAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-C---GGAC-T-AG-C---T-TACG-A-CCAT-AA-C---GT-G-T-C
gi|121109 : ATAT-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121110 : AT-GAAGAGA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121111 : T-AGAAAGA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTT-AA-TT-TA-TAG-----AG--------ACG-ACCCCT-AG-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121112 : T-GAAGAGA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121113 : A-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGCG-A--CCT-AG-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114 : A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TACG-A-CCCT-A
gi|121115 : -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TACG---CCCT-AGAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TAC-AAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116 : AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TACA-A-CCCT-TG-T---GG-G-T-CT-TCAT--CA
gi|121117 : TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CA
gi|121118 : C-T-AG-C---T-TACG-A-CCAT-AG-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CAC-AAA-
blockSeqs : TG A A A T A T TG GTATC T T A ACAG T A A TTT C G C A A GGG C T C A CG A A AA G A TG TC A C TACGTGT TAACATGT CACGAT G TATGAAAA G
blockSeqs : G T . A . . . . . . . . ACAG A . . A . . . A . . . . . . TA . . G . . A . . . . TGC . G . .
blockSeqs : G T . A . . . . . . . . CCG . . . . . . . A . . . . . . A . . G . . . . . . . T . G . .
blockSeqs : A T . A . . . . . . . . CAG . . . . . . . . . . . . . . . . . A . . . . . . . T . G . .
blockSeqs : A A . T . . . . . . . . CAG . . . . . . . . . . . . . . . . . A . . . . . . . T . T . .
blockSeqs : C A . A . . . . . . . . CCG . . . . . . . . . . . . . . . . . G . . . . . . . T . G . .
blockSeqs : T A . A . . . . . . . . CCG . . . . . . . . . . . . . . . . . G . . . . . . . T . G . .
blockSeqs : G A . A . . . . . . . . CCG . . . . . . . . . . . . . . . . . A . . . . . . . T . . . .
blockSeqs : A A . T . . . . . . . . CCG . . . . . . . . . . . . . . . . . A . . . . . . . . . . . .
blockSeqs : G T . A . . . . . . . . CCG . . . . . . . . . . . . . . . . . A . . . . . .
blockSeqs : A T . A . . . . . . . . CGG . . . . . . . . . . . . . . . . . A . . . . .
blockSeqs : A T . T . . . . . . . . CAG . . . . . . . . . . . . . . . . . G . . . .
blockSeqs : A T . A . . . . . . . . AAG . . . . . . . . . . . . . . . . . C . . . .
blockSeqs : A T . T . . . . . . . . CCG . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : A T . A . . . . . . . . TAT . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : G T . A . . . . . . . . TTC . . . . . . . . . . . . . . . . .
blockSeqs : A T . A . . . . . . . . ACA . . . . . . . . . . . . . . . . .
blockSeqs : A T . T . . . . . . . . TC . . . . . . . . . . . . . . . .
blockSeqs : T T . A . . . . . . . . TC . . . . . . . . . . . . . . . .
blockSeqs : G A . A . . . . . . . . TC . . . . . . . . . . . . . . . .
blockSeqs : G A . A . . . . . . . . TC . . . . . . . . . . . . . . . .
blockSeqs : A A . A . . . . . . . . TG . . . . . . . . . . . . . . .
blockSeqs : G A . A . . . . . . . . TA . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . CG . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
finalCons : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Alignments
lowQualScore : 1111111 1111111111 111111 11111111
lowQualScore : 22 1 1 1 1 1 1 11 33333 1 1 1 99999 2 1 1 333 1 1 1 4 1 222 1 1 1 1 66 1 2 33 2 2 55 33 3 3 3333333 4444444444 111111 2 44444444 4
lowQualScore : .. . . . . . . .. ..... . . . ..... . . . ... . . . . . ... . . . . .. . . .. . . .. .. . . ....... .......... ...... . ........ .
lowQualScore : 11 0 5 8 4 4 4 99 44444 4 4 4 11111 9 4 4 999 5 5 5 6 6 888 6 6 6 7 22 8 2 33 5 5 99 44 3 6 0000000 4444444444 555555 5 55555555 0
consensus : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
Reference ( family-628 ) : ATAT-GGAANGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121089 : ATAC-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAAAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121090 : ATAT-GCAGAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-TG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAT-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTATA
gi|121091 : ATAT-GGAATGA-TAACACTATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-ATC-T-GAA-GC-AAATCAT--G-T--CACAAAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121092 : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-CGGGGG-G-T-CT-TCGT--CAG-GTC-C-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TATACA-------T--ATGC------ACGA--------TGTT-TGTACA
gi|121093 : ACAT-AGAATGA-TAACACCATCTTTATG-ATC-AACT-AT--C-----A-TTT-AT-TT-ACAGAGAC-T-AG-C---T-TACG-A-TCCC-AG-C---GG-G-T-TT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--CAC-AAG-AG-------TTTGCA-------T--ATGC------ATGA--------TGTT-TGTACA
gi|121094 : ATAT-CGAAAGA-TAACACCTTCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAT-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAG-GT-AAATCAT--GTT--CAT-A
gi|121095 : ATAT-TGAAAGA-TAACAC-ATCTTTTTG--TC-AACT-AC--A-----A-AC--AT-TT-CC-GAGAC-T-AG-C---TCTA-G-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GT--T-GAA-GT-AAATCAT--GTT--CAC-ACA-AG-------TATACA-------T--ATGC------AC-G--------TGTTGTGT
gi|121096 : ATAT-GGAAAGAATAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCTAAG-C---GG-G-T-CT-TCAT--CAG-GTC-T-
gi|121097 : ATATTGGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-TAAG-C---T-TACG-A-CCCT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-
gi|121098 : ATAT-AGAAAAA-CAACACTTTCTTTTTG-ATA-GATT-AT--C-----A-TTT-AT-TT-TC--AGCC-T-AC-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TTAT--CAG-GTC-T-AAA-GC-AAATCAT--ATT--TAC-AAG-AA-------TATACA-------TGCATAC------ACTGTATGAAAATGTT-TATACA
gi|121099 : ACAT-GGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-A-CT-TCAT--CAT-GT
gi|121100 : ATAT-AGAATGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-TTT-AT-TT-CG-GAGAC-T-AG-C---T-TACG-A-CCCC-AG-C---GA-G-T-CT-TCAT--CAG-GT
gi|121101 : ATAT-AGAATGA-TAACACC---TTTTTG-ATC-AACT-AC--AGTATCA-TTT-AT-TT-TC--AGAC-T-AG-C---T-TACG-A-CACT-AG-C---GA-G-T-CT-TCAT--CAG-GTC-T-AAA-GC-AAATCAT--GTT--TA
gi|121102 : ATAT-AGAATGA-TAACATATTCTTTTTG-ATC-AACT-AT--C-----A-TAT-AT-TT-TC--AGAC-T-AG-C---T-gctagtctgaaaatata
gi|121103 : ATAT-AGAATGA-TAACACCATCTTTATG-ATCAAACT-AT--A-----A-TTT-AT-TT-CA-GAGAC-T-AG-CA--T-TACG-A-CCCTAAG-C---GG-G-T-TA-TCATA-CGG-GT--T-AAA-GCAAAATCATA-GTTTCCAC-AAG-AGTACGTGTTATACATAACATGT--ATGC------AC-A--------TGTT-TGTACA
gi|121104 : ATAT-AGAATAA-CAAAACCTTCTTTTTG-ATT-AAAT-AT--A-----A-TTT-AT-TT-TC--AGAC-T-AG-C---T-TGCG-A-CCCT-AG-C---GG-G-T-CC-TCAT--CAG-GTC-T-AAA-GC-GAAT--T--GTT--
gi|121105 : ATAT-GGAATGA-CAACACCATCTTTTTC-ATC-AACC-AT--A-----A-TTT-AT-TT-AA-GAGAC-T-AG-C---T-TACGGA-CCCT--G-C---GG-G-T-CT-TCAT--CAG-G
gi|121106 : ATAA-AGAATAA-TAACACCATCATGTTG-ATC-AACT-TC--A-----T-TTT-AT-TT--T-GAGACTT-AG-C---T-TACG-A-CCCT-AG-T---GG-G-TCCT-TCAT--CAG-GT
gi|121107 : ATAT-AGAATGA-TAACACCATCTTTATG-ATC-GACT-AT--A-----A-TTT-AT-TTACA-GAGAC-T-AG-C---
gi|121108 : ATAT-TAAATGA-TAACACTTTCTTTTT--ATC-AATT-AT--C-----A-TTTTAT-TT-C---GGAC-T-AG-C---T-TACG-A-CCAT-AA-C---GT-G-T-C
gi|121109 : ATAT-GGAAAGA-TAACACCATCTTTTTG-ATC-AACT-AT--A-----A-
gi|121110 : AT-GAAGAGA-TAACACCATCTTTTTG-ATC-AACG-AT--A-----A-TTT-AT-TT-CC-GAGAC-T-AG-C---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CAG-GTC-T-GAA-GC-AAATCAT--GTT--CAC-AAA-AG-------TATACA-------T--ATGC------ACGG--------TGTT-TGTACA
gi|121111 : T-AGAAAGA-TAACACCATCTTTATG-ATC-AGCT-AT--A-----A-TTT-AA-TT-TA-TAG-----AG--------ACG-ACCCCT-AG-C---AG-T-T-CT-TCAT--CA--GTCAT-CA---C-ACGTCAT--GTT--
gi|121112 : T-GAAGAGA-TAACATCATCTTTATG-ATC-AACT-AC--A-----A-TTT-AT-TT-
gi|121113 : A-TAAAACT-TCTTTTTG-ATT-AAAT-AT--A-----ATTTT-AT-TT-TT-CAGACAT-CG-CTTTT-TGCG-A--CCT-AG-C---GG-G-T-CC-TCATCGCAG-GTC-T-AAAGGC-GAAT--T--GTT--
gi|121114 : A-TGATACCACCTTTTTG-ACC-AACT-AT--C-----A-GTT-ATATT-C---AGAC-T-AC-C---T-TACG-A-CCCT-A
gi|121115 : -TAA-ACC--CTTCTTATATC-AGCT-AT--A-----A-TTG-AT-TG-AC-AAGAC-T-AGAC---T-TACG---CCCT-AGAC---GGCGTT-CTATCATTACAGAGTC-TAAAA-GC-AAATCACTGGTT--TAC-AAACAG-------TATACA----------ATGCCACGATACGA--------TGTT-
gi|121116 : AACGCTTTCTTTTTG-ATC-AACT-TT--T-----A-GTT-AT-TT-T--AAGAC-T-AG-C---T-TACA-A-CCCT-TG-T---GG-G-T-CT-TCAT--CA
gi|121117 : TTTCTG-ATG-AACTTGTTGA-----A-ATT-AT-TT-C--GGGAC-T-AG-T---T-TACG-A-CCCT-AG-C---GG-G-T-CT-TCAT--CA
gi|121118 : C-T-AG-C---T-TACG-A-CCAT-AG-C---GG-G-T-CT-TCAT--CAG-ATC-T-TAA-GA-AAATCCA--GTT--CAC-AAA-