lowQualScore                  :                                 1111                                                                         1                
lowQualScore                  :                                 7777                                   11       5555 5555 2222               0          1     
lowQualScore                  :                                 ....                                   ..       .... .... ....               .          .     
lowQualScore                  :                                 0000                                   77       2222 2222 6666               8          3     
consensus                     :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
Reference ( gi|43594 )        :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43593                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43605                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43604                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43598                      :                      AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43597                      :                      AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43596                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43595                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43603                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43602                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43611                      :                      AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACAAATCTTTGAATCGTAATGGATCTAAGAAA
gi|43610                      :                      AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43607                      :                      AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43601                      :                      AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43600                      :                      AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43599                      :                      AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43609                      :                      AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43608                      :                      AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43612                      :                      AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----A-CAATCTTTGAATCATACTGGATCT-AGAAA
gi|43613                      :                      AGGTTTGACTA----ACCAATCTTTGAATCGTAACGGATCTAGAAATGAGTTTTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43606                      :                      AGCTTTGACTA----ACTAGTCTTTGAATCCTAACGGATCTAGAAATGAG--GTTTGAC----T----A----ACCAATCTTTGAATCGTAACGGATCT-AGAAA
gi|43591                      :                      AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43590                      :                      AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43589                      :                      AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43614                      :                      AGTTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43592                      :                      AGTGTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACTAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43615                      :                      AGTTTTGACTA----AC-AATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43617                      :                      AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAA
gi|43619                      : ccagtaacggatctagaaatgAGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAA
gi|43618                      :          gatctagaaatgAGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAA
gi|43616                      :            gatctagaaatgTTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43617                      :                                                    GTAACGGATCTAGAAATGAG--TTTTGAC----T----ATAGAACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43619                      :                                                       ccaGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43618                      :                                                          GATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43614                      :                                                                      AG--TTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43615                      :                                                                      AG--TTTTGAC----T----A----AC-AATCTTTGAATCATACTGGATCT-AGAAAagagttttgactaaccagtctttgaatc
gi|43616                      :                                                                        --TTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAAagagttttgactaaccagtctttgaatc





Alignments
lowQualScore                  :            1111                                                                                          
lowQualScore                  :            5555                                   11       5555 5555 2222                          1     
lowQualScore                  :            ....                                   ..       .... .... ....                          .     
lowQualScore                  :            2222                                   88       5555 5555 7777                          4     
consensus                     : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
Reference ( family-619 )      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43589                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43590                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43591                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43592                      : AGTGTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACTAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43593                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43594                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43595                      : AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43596                      : AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43597                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43598                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43599                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43600                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43601                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43602                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43603                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43604                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43605                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43606                      : AGCTTTGACTA----ACTAGTCTTTGAATCCTAACGGATCTAGAAATGAG--GTTTGAC----T----A----ACCAATCTTTGAATCGTAACGGATCT-AGAAA
gi|43607                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43608                      : AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43609                      : AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43610                      : AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43611                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACAAATCTTTGAATCGTAATGGATCTAAGAAA
gi|43612                      : AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----A-CAATCTTTGAATCATACTGGATCT-AGAAA
gi|43613                      : AGGTTTGACTA----ACCAATCTTTGAATCGTAACGGATCTAGAAATGAGTTTTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43614                      : AGTTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43615                      : AGTTTTGACTA----AC-AATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43616                      :   TTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43617                      :                               GTAACGGATCTAGAAATGAG--TTTTGAC----T----ATAGAACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43618                      :                                  ccaGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43619                      :                                     GATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA





Alignments
lowQualScore                  :            1111                                                                                          
lowQualScore                  :            5555                                   11       5555 5555 2222                          1     
lowQualScore                  :            ....                                   ..       .... .... ....                          .     
lowQualScore                  :            2222                                   88       5555 5555 7777                          4     
consensus                     : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
Reference ( family-619 )      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43589                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43590                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43591                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43592                      : AGTGTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACTAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43593                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43594                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43595                      : AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43596                      : AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43597                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43598                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43599                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43600                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43601                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43602                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43603                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43604                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43605                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43606                      : AGCTTTGACTA----ACTAGTCTTTGAATCCTAACGGATCTAGAAATGAG--GTTTGAC----T----A----ACCAATCTTTGAATCGTAACGGATCT-AGAAA
gi|43607                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43608                      : AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43609                      : AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43610                      : AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43611                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACAAATCTTTGAATCGTAATGGATCTAAGAAA
gi|43612                      : AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----A-CAATCTTTGAATCATACTGGATCT-AGAAA
gi|43613                      : AGGTTTGACTA----ACCAATCTTTGAATCGTAACGGATCTAGAAATGAGTTTTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43614                      : AGTTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43615                      : AGTTTTGACTA----AC-AATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43616                      :   TTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43617                      :                               GTAACGGATCTAGAAATGAG--TTTTGAC----T----ATAGAACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43618                      :                                  ccaGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43619                      :                                     GATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA


blockSeqs                     :            TAGA                                   TT       TATA ATAG TAGA                          A
blockSeqs                     :            TAGA                                   .        TATA ATAG .                             .
blockSeqs                     :            TAGA                                   .        .    .    .                             .
blockSeqs                     :            TATA                                   .        .    .    .                             .
blockSeqs                     :            TATA                                   .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :            .                                      .        .    .    .                             .
blockSeqs                     :                                                   .        .    .    .                              
blockSeqs                     :                                                   .        .    .    .                              
blockSeqs                     :                                                   .        .    .    .                              


blockSeqCons                  : 
originalCons                  : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
finalCons                     : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA





Alignments
lowQualScore                  :            1111                                                                                          
lowQualScore                  :            5555                                   11       5555 5555 2222                          1     
lowQualScore                  :            ....                                   ..       .... .... ....                          .     
lowQualScore                  :            2222                                   88       5555 5555 7777                          4     
consensus                     : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
Reference ( family-619 )      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43589                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43590                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43591                      : AGTTTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACCAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43592                      : AGTGTTGACTA----ACCAGTCATTGA-----------TCTAGAAATGAG--CTTTGAC----T----A----ACTAGTCTTTGAATCCTAACGGATCT-AGAAA
gi|43593                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43594                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCCTAATGGATCT-AGAAA
gi|43595                      : AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43596                      : AGTTTTGACTA----ACCAGTCTTTGAATCATAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43597                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43598                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43599                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43600                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43601                      : AGTTTTGACTATAGAACCAGTCTTTGAATCGTAATGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43602                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43603                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGACTATAT----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43604                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43605                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----TATAGA----ACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43606                      : AGCTTTGACTA----ACTAGTCTTTGAATCCTAACGGATCTAGAAATGAG--GTTTGAC----T----A----ACCAATCTTTGAATCGTAACGGATCT-AGAAA
gi|43607                      : AGCTTTGACTA----ACCAGTCTTTGAATCCTAACGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCATAATGGATCT-AGAAA
gi|43608                      : AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43609                      : AGTTTTGACTATATAACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTAGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43610                      : AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43611                      : AGTTTTGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----ACAAATCTTTGAATCGTAATGGATCTAAGAAA
gi|43612                      : AGTTTAGACTA----ACCAGTCTTTGAATCGTAACGGATCTAGAAATGAG--TTTTGAC----T----A----A-CAATCTTTGAATCATACTGGATCT-AGAAA
gi|43613                      : AGGTTTGACTA----ACCAATCTTTGAATCGTAACGGATCTAGAAATGAGTTTTTTGAC----T----A----ACCAATCTTTGAATCATACTGGATCT-AGAAA
gi|43614                      : AGTTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43615                      : AGTTTTGACTA----AC-AATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43616                      :   TTTTGACTA----ACCAATCTTTGAATCATACTGGATCTAGAAAAGAG--TTTTGAC----T----A----ACCAGTCTTTGAATC
gi|43617                      :                               GTAACGGATCTAGAAATGAG--TTTTGAC----T----ATAGAACCAGTCTTTGAATCGTAATGGATCT-AGAAA
gi|43618                      :                                  ccaGATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA
gi|43619                      :                                     GATCTAGAAATGAG--TTTTGAC----T----A----ACCAGTCTTTGAATCGTAACGGATCT-AGAAA