lowQualScore : 1 4444444444444
lowQualScore : 0 1 11 5555 8888 5 5 4 3333333333333
lowQualScore : . . .. .... .... . . . .............
lowQualScore : 5 3 88 5555 2222 1 4 5 8888888888888
consensus : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCGTAACGGATCT-AGAAA-----TGAGTTTTG
Reference ( gi|45631 ) : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACAAATCTTTGAATCGTAATGGATCTAAGAAAT---TTTAGTTTTG
gi|45619 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45618 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45617 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45616 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45615 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45621 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45620 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45623 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC
gi|45622 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC
gi|45613 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45612 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45630 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC
gi|45629 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC
gi|45628 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC
gi|45627 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC
gi|45614 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45625 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTGA
gi|45624 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTGAtctag
gi|45626 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTGTTGAC----T----AACCAGTCATTGAtctag
gi|45611 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------T---TTCAGTTTTGtctag
gi|45610 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------T---TTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45609 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------T---TTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45632 : AGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGGTTTGAC----T----AACCAATCTTTGAATCccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45633 : AATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTGAC----T----AACCAGTCATTGA
gi|45634 : TTTAAATCATAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCtctag
gi|45635 : GGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45636 : GGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC
gi|45639 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45638 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45637 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45640 : GATCT-AGAAA--TGAGCTTTGAC----T----AACTAGTCTTTGAATC
gi|45619 : AGTCTTTGAATCGTAACGGATCT-AGAAA-----TGAGTTTTG
gi|45618 : cAGTCTTTGAATCGTAACGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45617 : cAGTCTTTGAATCGTAATGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45616 : cAGTCTTTGAATCGTAATGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45615 : cAGTCTTTGAATCGTAATGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45621 : cAGTCTTTGAATCCTAACGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45620 : cAGTCTTTGAATCCTAACGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45623 : cAGTCTTTGAATCGTAACGGATCT-AGAAATGAGTTTAGactaaccagtctttgaatc
gi|45622 : cAGTCTTTGAATCGTAACGGATCT-AGAAATGAGTTTAGactaaccagtctttgaatc
gi|45613 : cAGTCTTTGAATCATAATGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45612 : cAGTCTTTGAATCATAATGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45630 : cAGTCTTTGAATCGTAACGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45629 : cAGTCTTTGAATCGTAACGGATCT-AGAAA-----TGAGTTTTGactatataaccagtctttgaatc
gi|45628 : cAGTCTTTGAATCGTAACGGATCT-AGAAA-----TGAGTTTTGactatagaaccagtctttgaatc
gi|45627 : cAGTCTTTGAATCGTAACGGATCT-AGAAA-----TGAGTTTTGactatataaccagtctttgaatc
gi|45632 : cAGTCTTTGAATCCTAACGGATCT-AGAAAT---actatagaaccagtctttgaatc
gi|45614 : AGTCTTTGAATCCTAACGGATCTAGAAAA------GAGTTTTGgaggtttgactaaccaatctttgaatc
gi|45625 : cAGTCTTTGAATCCTAATGGATCT-AGAAA-----TGAGTTTTGactaaccagtctttgaatc
gi|45624 : cAGTCTTTGAATCCTAATGGATCT-AGAAA-----TGAGTTTTGactaaccagtcattgatctag
gi|45626 : cAGTCTTTGAATCATAATGGATCT-AGAAAT---actaaccagtcattgatctag
gi|45633 : cAATCTTTGAATCGTAATGGATCTAAGAAAT---TTTAGTTTTGgagtgttgactaaccagtcattgatctag
Alignments
lowQualScore : 4 6666
lowQualScore : 0 1 11 5555 8888 6 0 1111
lowQualScore : . . .. .... .... . . ....
lowQualScore : 1 2 77 3333 0000 0 0 0000
consensus : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTG
Reference ( family-601 ) : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTG
gi|45609 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45610 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATCtggtttcagttttgccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45611 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATCtggtttcagttttgccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45612 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCtggtttcagttttgccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45613 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45614 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45615 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45616 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45617 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45618 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45619 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45620 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45621 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45622 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC
gi|45623 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC
gi|45624 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTGA
gi|45625 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTGAtctag
gi|45626 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTGTTGAC----T----AACCAGTCATTGAtctag
gi|45627 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATCtctag
gi|45628 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC
gi|45629 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC
gi|45630 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC
gi|45631 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACAAATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTG
gi|45632 : AGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGGTTTGAC----T----AACCAATCTTTGAATC
gi|45633 : AATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTGAC----T----AACCAGTCATTGA
gi|45634 : TTTAAATCATAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCtctag
gi|45635 : GGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45636 : GGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC
gi|45637 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45638 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45639 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45640 : GATCT-AGAAA--TGAGCTTTGAC----T----AACTAGTCTTTGAATC
Alignments
lowQualScore : 11111111111111111
lowQualScore : 33333333333333333
lowQualScore : 0 1 11 5555 8888 33333333333333333 2
lowQualScore : . . .. .... .... ................. .
lowQualScore : 1 2 77 3333 0000 88888888888888888 2
consensus : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
Reference ( family-601 ) : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTG
gi|45609 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
gi|45610 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45611 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45612 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45613 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45614 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45615 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45616 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45617 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45618 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45619 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45620 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45621 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45622 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC
gi|45623 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC
gi|45624 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTGA
gi|45625 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTGAtctag
gi|45626 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTGTTGAC----T----AACCAGTCATTGAtctag
gi|45627 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATCtctag
gi|45628 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC
gi|45629 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC
gi|45630 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC
gi|45631 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACAAATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTG
gi|45632 : AGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGGTTTGAC----T----AACCAATCTTTGAATC
gi|45633 : AATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTGAC----T----AACCAGTCATTGA
gi|45634 : TTTAAATCATAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATCtctag
gi|45635 : GGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC
gi|45636 : GGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC
gi|45637 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45638 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45639 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC
gi|45640 : GATCT-AGAAA--TGAGCTTTGAC----T----AACTAGTCTTTGAATC
Alignments
lowQualScore : 2222222222
lowQualScore : 0 1 11 5555 8888 2222 1111111111
lowQualScore : . . .. .... .... .... ..........
lowQualScore : 1 2 77 3333 0000 7777 9999999999
consensus : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
Reference ( family-601 ) : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
gi|45609 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
gi|45610 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45611 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45612 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----ccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45613 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45614 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45615 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45616 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45617 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45618 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45619 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45620 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45621 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45622 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC----
gi|45623 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC----
gi|45624 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45625 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45626 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTGTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45627 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC----
gi|45628 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC----
gi|45629 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC----
gi|45630 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC----
gi|45631 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACAAATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTG
gi|45632 : AGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGGTTTGAC----T----AACCAATCTTTGAATC----
gi|45633 : AATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45634 : TTTAAATCATAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45635 : GGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45636 : GGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC----
gi|45637 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC----
gi|45638 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC----
gi|45639 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC----
gi|45640 : GATCT-AGAAA--TGAGCTTTGAC----T----AACTAGTCTTTGAATC----
blockSeqs : A TT TATA ATAG GTAA ATCTAAGAAA
blockSeqs : . . TATA ATAG . .
blockSeqs : . . . ATAG . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
finalCons : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
Alignments
lowQualScore : 2222222222
lowQualScore : 0 1 11 5555 8888 2222 1111111111
lowQualScore : . . .. .... .... .... ..........
lowQualScore : 1 2 77 3333 0000 7777 9999999999
consensus : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
Reference ( family-601 ) : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
gi|45609 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTG
gi|45610 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45611 : CAATCTTTGAATCATACTGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----TGG----------TTTCAGTTTTGccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45612 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----ccacggtatgtgagagtaaacctgataaaggggacggtggaggaaatggtggaatcgtt
gi|45613 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45614 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--AGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45615 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45616 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45617 : CAGTCTTTGAATCGTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45618 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45619 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45620 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45621 : CAGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45622 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC----
gi|45623 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTAGAC----T----AACCAGTCTTTGAATC----
gi|45624 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45625 : CAGTCTTTGAATCCTAATGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45626 : CAGTCTTTGAATCATAATGGATCT-AGAAA--TGAGTGTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45627 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC----
gi|45628 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC----
gi|45629 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC----
gi|45630 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGACTATAT----AACCAGTCTTTGAATC----
gi|45631 : CAGTCTTTGAATCGTAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACAAATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTG
gi|45632 : AGTCTTTGAATCCTAACGGATCT-AGAAA--TGAGGTTTGAC----T----AACCAATCTTTGAATC----
gi|45633 : AATCTTTGAATCGTAATGGATCTAAGAAATTTTAGTTTTGAC----T----AACCAGTCATTG-ATC----TAG----------
gi|45634 : TTTAAATCATAACGGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45635 : GGATCT-AGAAA--TGAGTTTTGAC----T----AACCAGTCTTTGAATC----
gi|45636 : GGATCT-AGAAA--TGAGTTTTGAC----TATAGAACCAGTCTTTGAATC----
gi|45637 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC----
gi|45638 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC----
gi|45639 : GATCT-AGAAA--TGAGCTTTGAC----T----AACCAGTCTTTGAATC----
gi|45640 : GATCT-AGAAA--TGAGCTTTGAC----T----AACTAGTCTTTGAATC----