lowQualScore : 2222222222222222222222222222222222222222 1111 222
lowQualScore : 1 1 1 1 2 1 1 88888 3 44 1 11 1 2222 1 22 1 111 2 55555 2 5555555555555555555555555555555555555555 33 0 0 0 0 7 1 11 4 2 11 1 33 2 222 1 1 3 1 55 666 3 4 0000 5 999 2
lowQualScore : . . . . . . . ..... . .. . .. . .... . .. . ... . ..... . ........................................ .. . . . . . . .. . . .. . .. . ... . . . . .. ... . . .... . ... .
lowQualScore : 6 6 6 3 6 3 3 88888 9 33 0 44 0 2222 0 11 0 888 0 99999 9 7777777777777777777777777777777777777777 33 8 8 8 8 7 3 88 7 7 88 3 22 8 444 4 4 4 4 77 222 1 1 2222 7 666 5
consensus : ACGTCAC-A-A-TTGAA-A-GG-AG-A--CN-T-AA--TA-TT--G-AAA----AT-TTCGGGGC-GT---C-GT---A-T-GACTC------G-----T--T--G--N----T----G---A----C--GTCA-C-A-A-TTGAAAAGGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TTCGGG-GC-GTCGT-G-TGA-CTCGTT--GNTGNCCA-ATCACAA
Reference ( gi|7108 ) : ACATCAC-A-A-TTGAA-A-GG-AG-A--CC-T-AA--TA-TT--G-AAA----AT-TTTGGGGC-GT---C-GT---A-T-GACTC------C-----T--T--G--T----T----G---G----C--ATCA-C-A-A-TTGAAAAGGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TTCAGG-GT-GTCAT-G-TGA-TTCATT--TTTGTCCA-ATCATAA
gi|7107 : ACATCAC-A-A-TTGAA-A-GG-AG-A--CC-T-AA--T--TT--G-AAA----AA-TTTCAGGC-GT---TAAT---G-T-GACTT------CGT---T--T--G--T----A----A---A----C--ATCA-C---A-TTG-AAAGGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TT--AG-GC-GTCAT-G-TGA-TTCGTT--
gi|7112 : aACATCAC-A-A-TTGAA-A-GG-AG-A--CC-A-AA--TA-TT--G-AAA----AT-TT
gi|7097 : aaggagacctaatattgaaaatttggggcgttgtatgactcgttggtgACGTCAC-A-A-TTAAA-A-GG-AG-A--CC-T-AA--TA-TT--G-AAA----A--TTTGGGGC-GT---T-GT---A-T-GACTC------G-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTGAAAc
gi|7096 : aaacatccctgcacggagatgatgtaatgaaattccgaagcctctgttaagtgACGTCAC-A-A-TTAAA-A-GG-AG-A--CG-T-AA--TA-TT--G-AAA----AT-TTCGGCGT-GT---C-GT---A-T-GACTC------C-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTGAAAg
gi|7096 : aaacatccctgcaaagagatggtgtattgaaatttcgaagcctctgttaagtgACATCCC------TGCA-A-AG-AG-A--TG-G-TG--TA-TT--G-AAA-----T-TTCGAAGC-------------------CTC---------------T--G--T----TAAGTG---A----C--GTCA-C-A-A-TT-AAAAGGAG-A--CGT-AA--TA-TT--G-AAA---A-T-TTCGGC-GT-GTCGT-A-TGA-CTCCTT--GGTGAC---ATCACAAg
gi|7116 : aaACGTCAC-A-A-TTAAA-A-GG-AG-A--CG-T-AA--TA-TT--G-AAA----AT-TTCGGGAC-GT---C-GT---ATT-GACTC------G-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTGAAAttgaaag
gi|7094 : aaacggtgtattgaaatttcgaagcctctgttaagtgACGTCAC-A-A-TTAAA-A-GG-AG-A--CA-T-AA--TA-TT--G-AAA----AA-TTCGGGGC-GT---C-GT---A-T-GACTC------G-----T--T--G--G----T----G---A----C--ATCA-C-G-A-TTGAAAg
gi|7121 : aaacatccctgcatggagatggtgtattgaaattttgaagcctctgttaagtgATATCAC-A-A-TTGAA-A-GG-AG-A--CA-T-AT--TA-TT--G-ACA----AT-TTTGGGGC-GT---C-AT---G-T-GACTT------G-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTGAAg
gi|7118 : gtgACATCAT-A-G-TTGAA-T-GG-AG-A--CA-T-AA--TA-TT--A-AAA----AT-TTCAGGGT-GT---C-AT---G-T-GATTC------gg
gi|7123 : tattgaaaatttctgggcgtcatatgcttcggaagtaacgtACATCAC-A-A-TTGAA-A-GG-AG-A--CC-T-AA--TA-TT--G-AAA----AT-TTCAGGGC-GT---C-AT---G-T-GATTC------G-----T--T--at
gi|7106 : gtgACGTCAC-A-A-TTGAA-A-GG--G-A--CC-T-AA--TA-TT--G-AAA----AT-TTT-GGGC-GT---C-AT---ATT-GACTC------G-----T--T--G--G----T----G---A----C--CT-A-C-A-A-TTGAAA
gi|7119 : aacatcccagcaaggagatggtgtattgaaatttcaaagACGTCAC-A-G-TTGAA-A-GG-AG-A--TA-T-AA--TA-TT--A-GAA----AT-GTCAGGAC-GT---C-AT---G-T-GATTC------A-----T--T--T--T----T----G---T----CCAATCA-C-A-g
gi|7098 : ctggtaagtgACGTCAC-A-A-TTAAA-A-GG-AG-A--C--T-AA--TA-AT--G-AAA----AT-TTTGGGGC-GG---C-GT---C-TTGACTC------G-----T--T--G--G----T----G---A----C--CTCA-C-A-A-TTGAAA
gi|7117 : aaacatcctgcacggagattggtgtattgaacactccgaagcctgtataagtgACATCAC-A-A-TTGAA-A-GG-AG-A--CC-T-AA--T--TT--G-AAA----AA-TTTCAGGC-GT---TAAT---G-T-GACTT------CGT---T--T--G--T----A----A---A----C--ATCA-C---A-TTGAAAg
gi|7099 : tattaaaattttcgggaagacgttgactttgttgtgaACGTCAC-A---TTGAA-AAGG-AG-A---C-T-AA--TATTT--G-AAA----ACGTTTGGGGCGGT---C-GT---A-T-GACTT------CG----T--T--GGTT----T----G---A----C--ATCC-C-C-A-ATGAAAg
gi|7104 : aaacatccctgcaagagaggtgtatcaaatgtgaaatttcaaagccctctgtttaagtgACATCAC-A-G-TTGAA-T-TG-AG-A--CG-T-AA--TA-TT--G-AAA----AT-TCT-GGGC-AT---C-GT---A-T-GCCTCGTAAGAC-----T--TTAA--TAG--T----G---A----T--GTCA-C-A-G-TTGAAg
gi|7100 : aaacatccctgtacagattctgtaccccccgtaagggACGTCACCA-A-TTAAA-A-GG-AA-A--ACAT-AA--TA-TT--A-AAA----TT-TTCGGGAA-GA---C-GT-----T-GACT-------------T--T--G--T----T----GTGAA----C--ATCA-C-A-A-TTGAAAgg
gi|7101 : aaacatccctgcaaaggatatggtgtattgtattccagcctctgttaggtgACGTCAC-A-G-TTGAA-C-GG-AT-A-----T-AAAGTA-TTTTG-AAA----AT-TTCTTGGC-GT---C-AT---A-T-G---C------C-----T--G--G--TAAG-T----G---A----C--GTCA-C-A-G-TTGAAAg
gi|7114 : aaacacccctgctcggatatggtgtattgaaattctgtaccctatgtacgtgATCAC-A-ATTTGAA-AGGG-AG-A--CT-TCAA--TA-TT-----------AT-----GGGC-GT------T---T-T-GACTG------G-----T--T--G--G----T----G---A----C--ATCA-C-G-A-TTg
gi|7095 : aaggaatcgtgaatatataaaattttcggacgtgttgattttgtgggtggtgtttTCAC-A-A-TTAAA-A-GGCAG-A---C-T-AA--T--TT--GAAAA----AT-TTCGGGGC-G----C-GT---A-T-GACTC------------------G--TG---T----G---A----C--ATCA-C-G-A-TTGAAA
gi|7120 : aaaaatcctgcatggagatggtgtattgaaattttgagcctctgttaagtgacggTCAA-A-A-TGGAA-A-GG-AGTA--CG-T-AA--TA-TT--G-AAA----AT-TTCAGGGC-GT---C-AT---G-T-GA---------T-----T--T--G--T----T----g
gi|7103 : gtgatTCAC-A-G-TTGAA-C-GG-AG-G--CA-T-AA--TA-TT--G-AAA----AT-TTCTGGGC-GT---C-AT---A-T-G
gi|7105 : aaacatccctgcattgtgattgcaattctatagcccccgttatgtgatgTCAC-ATA-TTAAAGA-GG-AG-ATGCC-TGAA--TA-TT--G-AAACAAGGT-TCTCGGAC-AAAAAC-GT---A-TTGACTGTG----C-----T--T--A--C----G----G---GA---CG-ATCA-C-A-A-CTGActtcggaagtaacgtacatcatagttgaa
gi|7124 : aaacatccctgcaaggagatggttaggtcatttgtgaaattccaaatcctcgtcgataaggtgaaacctgt-A-A-TTGTA-A-GG-AG-A--CC-T-AA--TA-TT--G-AAA----AT-TTCAGGGC-GT---C-AT---G-T-GATTC------A-----T--T--T--T----T----G---T----CCAATCA-T-A-A-tag
gi|7122 : -A-A-TTAGC-A-GG-AG-G-----T-AAGCTA-TT--G-GAA----AT-TTCGAGGC-GT---C-GC---A-T-GACTC------G-----T--T--A--G----T----A---A----C--GTCA-C-A-A-TTGAAA
gi|7110 : gtaatgctacaTGAA-A-GG-AG-A--CA-T-AT--TA-TT--G-ACA----AT-TTTGGGGC-GT---C-AT---G-T-GACTT------G-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTG--AAGGAT-A--CCT-AA--TA-TT--G-AAA---A---TTCAGG-GC-GTCAT-G-TGA-TTCGTT--g
gi|7113 : A-A-GG-AG-A--CG-T-AA--TA-TT--G-AAA----AT-TTCGGGAC-GT---C-GT---A-TTGACTC------G-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTG-AAAGGAG-A--CCT-AA--TA-TT--GAAAA---A-T-TTCAGG-GC-GTCAT-G-TGA-TTCGTT--TTTGTCCA-ATCATAA
gi|7111 : A-A-GG-AG-A--CG-T-AA--TA-TT--G-AAA----AT-TTCGGCGT-GT---C-GT---A-T-GACTC------C-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTG-AAAGGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TTTGGG-GC-GTCGT-A-TGA-CTCCTT--GTTGGC---ATCACAA
gi|7112 : A-A-GG-AG-A--CC-T-AA--TA-TT--G-AAA----AT-TT-GGGGC-GT---T-GT---A-T-GACTC------G-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTG-AAAGGAG-A--CCA-AA--TA-TT--G-AAA---A-T-TTCttgaaa
gi|7114 : A-A-GG-AA-T--CG-TGAA--TA-TA--T-AAA----AT-TTTCGGAC-GT-----GT-----T-GATT-------------T--T--G--TGGG-T----G---GTGTTT--ATCA-C-A-ATTTGAAAGGGAG-A--CTTCAA--TA-TT--
gi|7115 : -A-GG-AG-G-----T-AAGCTA-TT--G-GAA----AT-TTCGAGGC-GT---C-GC---A-T-GACTC------G-----T--T--A--G----T----A---A----C--GTCA-C-A-A-TTGAAA-GGAG-A--CAT-AA--TG-TT--G-AAA---A-T-TTCAGG-GC-GTCAT-G-TGA-TTCATT--TTTGTCCA-ATCATAAatgggcgttttgactggttggtgacatcacgatt
gi|7116 : --TA-TT--G-AAA-----T-TTCGAAGC-------------------CTC---------------T--G--T----TAAGTG---A----C--GTCA-C-A-A-TT-AAAAGGAG-A--CGT-AA--TA-TT--G-AAA---A-T-TTCGGG-AC-GTCGT-ATTGA-CTCGTT--GGTGAC---ATCACAA
gi|7094 : aaacggtg--TA-TT--G-AAA-----T-TTTGAAGC-------------------CTC---------------T--G--TTAAGT----G---A----C--GTCA-C-A-A-TT-AAAAGGAG-A--CAT-AA--TA-TT--G-AAA---A-A-TTCGGG-GC-GTCGT-A-TGA-CTCGTT--ttgaaag
gi|7118 : aaacatccctgcatggagatggtg--TA-TT--G-AAA----AT-TTCTGGGC-GT---C-AT---A-T-G-CTT------CGGAAGTAAC--G--T-------------A----C--ATCA-T-A-G-TTGAAT-GGAG-A--CAT-AA--TA-TT--A-AAA---A-T-TTCAGG-GT-GTCAT-G-TGA-TTCATggtgacatcacgattgaaag
gi|7098 : --TA-TT--G-AAC----AC-TCCGAAGC-CT-----GT---A-T-AA---------------------G--T---------G---A----C--GTCA-C-A-A-TT-AAAAGGAG-A--C-T-AA--TA-AT--G-AAA---A-T-TTTGGG-GC-GGCGTCT-TGA-CTCGTT--GGTGACC---TCACAA
gi|7117 : aaacatcctgcacggagattggtg--TA-TT--A-AAA----TT-TTCGGGAA-GA---C-GT-----T-GACT-------------T--T--G--T----T----GTGAA----C--ATCA-C-A-A-TTG-AAAGGAG-A--CCT-AA--T--TT--GAAAA---A-T-TTCAGGCGT--TAAT-G-TGACTTCGTT--Tttgaaag
gi|7095 : --TA-TT--G-AAA-----T-TTTGAGCC-TC---T-GTTAAG-T-GAC---------------------------------G---G--------TCA-C-A-A-TTAAAAGGCAG-A--C-T-AA--T--TT--G-AAA---AAT-TTCGGG-GC-G-CGT-A-TGA-CTCGTgtaaacatcacattgaaag
gi|7102 : aaaaatcctgcatggagatggtg--TA-TT--G-AAA-------TTCCGAGC-GT---C-TT---T-T-AA---------------------G--T----G----A---G--------TCATC-A-A-T--AAAAGGA--A--CCT-A---TA-TTA-G-AAAGAAA-T-TTCGGG-AC-GTTGT---TGA-CTCATT--TCTGTCgtgacatcacgattgaaag
gi|7125 : aaacattcccgcatggagataggtg-TT--A-AAA----TT-TTTGGGAC-GT---C-GT---A-T-GACTC------G-----G--T--G--G----T----G---A----T--ATCA-C-A-A-TTGAAAgacctcacatatggaa
gi|7126 : gggaactatct-TTCGGGAA-GA---C-GT---A-T-GACTC------G-----T--T--G--G----T----G---A----C--ATCA-C-A-A-TTGg
gi|7127 : GC-TT---C-AT---G-T-GACTC------G-----T--T--T--G----T----G---A----C--ATCA-C-A-A-TTGAAA
gi|7103 : T---A-T-AGCCC------CCG---T--T--A--TG---T----G---A----T--GTCA-C-A-G-TTGAAC-GGAG-G--CAT-AA--TA-TT--G-AAA---A-T-TTCTGG-GC-GTCAT-A-TGC-TTCg
gi|7097 : aaacatccctgcattgtgattgcaattc----T----G---A----C--GTCA-C-A-A-TT-AAAAGGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TT-GGG-GC-GTTGT-A-TGA-CTCGTT--GGTGAC---ATCACAAggaagtaacgtacatcatagttgaa
gi|7121 : aaacatccctgcacggagatgatgtaatgaaattccgaagcctctgttaag----T----G---A----T--ATCA-C-A-A-TTGAAA-GGAG-A--CAT-AT--TA-TT--G-ACA---A-T-TTTGGG-GC-GTCAT-G-TGA-CTTGTT--GGTGAC---ATCACAAttgaaag
gi|7123 : g----T----G---A----C--ATCA-C-A-A-TTGAAA-GGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TTCAGG-GC-GTCAT-G-TGA-TTCGTT--ttgaagg
gi|7119 : g----T----G---A----C--GTCA-C-A-G-TTGAAA-GGAG-A--TAT-AA--TA-TT--A-GAA---A-T-GTCAGG-AC-GTCAT-G-TGA-TTCATT--TTTGTCCA-ATCAC
gi|7099 : ctggtaag----T----G---A----C--GTCA-C-A---TTGAAAAGGAG-A---CT-AA--TATTT--G-AAA---A-CGTTTGGG-GCGGTCGT-A-TGACTTCGTTGGTTTG
gi|7100 : aaacatccctgcaagagaggtgtatcaaatgtgaaatttcaaagccctctgtttaag----T----G---A----C--GTCA-CCA-A-TTAAAAGGAAA-A--CAT-AA--TA-TT--A-AAA---T-T-TTCGGG-AA-GACGT---TGA-CT--TT--GTTGTGAACATCACAAacatccccaatgaaag
gi|7101 : aaacatccctgcaaaggatatggtgtattgtattccagcctctgttagg----T----G---A----C--GTCA-C-A-G-TTGAAC-GGAT-A----T-AAAGTA-TTTTG-AAA---A-T-TTCTTG-GC-GTCAT-A-TGttgaaag
gi|7106 : aaacacccctgctcggatatggtgtattgaaattctgtaccctatgtacg----G---A----C--GTCA-C-A-A-TTGAAAGGGA-----CCT-AA--TA-TT--G-AAA---A-T-TTT-GG-GC-GTCAT-ATTGA-CTCGTT--cctggtaagtgacgtcacagttgaaag
gi|7104 : aacatcccagcaaggagatggtgtattgaaatttcaaa----G---A----C--ATCA-C-A-G-TTGAAT-TGAG-A--CGT-AA--TA-TT--G-AAA---A---TTCTGG-GC-ATCGT-A-TGC-CTCGTggtgacctacaattgaaag
gi|7120 : aaacatccctgtacagattctgtaccccccgtaaggTCA-A-A-A-T-GGAAAGGAGTA--CGT-AA--TA-TT--G-AAA---A-T-TTCAGG-GC-GTCAT-G-TGA-TTTGTT--aagactttaatagtgatgtcacagttgaagg
gi|7105 : gtgatTCA-C-ATA-TTAAAGAGGAG-ATGCCTGAA--TA-TT--G-AAA---------CAAG-GT-
gi|7124 : aaacatccctgcaaggagatggttaggtcatttgtgaaattccaaatcctcgtcgataaggtgaaacctgt-A-A-TTGTAA-GGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TTCAGG-GC-GTCAT-G-TGA-TTCATT--TTTGTCCA-ATCATAAtctcggacaaaaacgtattgactgtgcttacgggacgatcacaactgatag
gi|7110 : AAAGGAG-A--CAT-AT--TA-TT--G-ACA---A-T-TTTGGG-GC-GTCAT-G-TGA-CTTGTT--GGTGAC---ATCACAA
gi|7112 : tgAAGGAG-A--CCT-AA--TA-TT--G-AAA---A-T-TT-GGG-GC-GTTGT-A-TGA-CTCGTT--GGTGAC---ATCACAAttgaaggatacctaatattgaaaattcagggcgtcatgtgattcgtt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7109 ): ACCCCTGCAAGGAGCTGGTGTATTGAAAATTTCAGGATTATATCTCAAGTGAGATCATAAT
Alignments
lowQualScore : 22
lowQualScore : 2 1 1 1 1 5 1 33 1 11 11 1 11 1 1 1 55 1 2 9 88888888888888888 1 3333 4444 1 1 4 2 1 1 1 3 333 1 1 1 2 2 444 4 333 11 1 55
lowQualScore : . . . . . . . .. . .. .. . .. . . . .. . . . ................. . .... .... . . . . . . . . ... . . . . . ... . ... .. . ..
lowQualScore : 4 5 5 5 5 9 5 44 2 77 77 2 33 2 1 1 66 1 3 1 77777777777777777 1 4444 6666 1 1 1 7 9 9 9 8 333 9 9 4 0 0 666 0 555 99 0 33
consensus : ACGTCAC-AATTGAAA-GG-AG-A-CGT-AA--TA-T--T--G-AAAA-T-TTCGGGGC-GTC-GTA-T-GAC-TC-GT----------T-G--G-T-GACG----T----CA-CAA-TTGAAAAGGAGACCT-AATA-TT-G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGGTGACC-ATCACAA
Reference ( family-583 ) : ACGTCAC-AATTGAAA-GG-AG-A-CNT-AA--TA-T--T--G-AAAA-T-TTCGGGGC-GTC-GTA-T-GAC-TC-GT----------T-G--N-T-GACG----T----CA-CAA-TTGAAAAGGAGACCT-AATA-TT-G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGNTGNCCAATCACAA
gi|7094 : -GG-AG-A-TGG-TG--TA-T--T--G--AAA-T-TTTGAAGC-------------C-TCTGT----------TAA--G-T-GACG----T----CA-CAA-TT-AAAAGGAGACAT-AATA-TT-G-AAA---A-A-TTCGGGGC-GTC-GT-A-TGAC-TCGT---TGGTGAC--ATCACGA
gi|7094 : aaacatccctgcatACGTCAC-AATTAAAA-GG-AG-A-CAT-AA--TA-T--T--G-AAAA-A-TTCGGGGC-GTC-GTA-T-GAC-TC-GT----------T-G--G-T-GACA----T----CA-CGA-TTGAAAttgaaag
gi|7095 : aaacatccctgcatggagatggtgtattgaaattttgaagcctctgttaagtg-GG-AG-A-TGG-TG--TA-T--T--G-AAAT-T-TT--GAGC-------------C-TCTGT----------T-A--AGT-GACGG---T----CA-CAA-TTAAAAGGCAGAC-T-AAT--TT-G-AAA---AAT-TTCGGGGC-G-C-GT-A-TGAC-TCGT-----GTGAC--ATCACGAg
gi|7095 : aaaaatcctgcatGTCAC-AATTAAAA-GGCAG-A-C-T-AA--T--T--T--G-AAAAAT-TTCGGGGC-G-C-GTA-T-GAC-TC-GT---------------G-T-GACA----T----CA-CGA-TTGAAAttgaaag
gi|7096 : aaaaatcctgcatggagatggtgtattgaaattttgagcctctgttaagtgacgTGCAA-AG-AG-A-TGG-TG--TA-T--T--G-AAA--T-TTCGAAGC-------------C-TCTGT----------TAA--G-T-GACG----T----CA-CAA-TT-AAAAGGAGACGT-AATA-TT-G-AAA---A-T-TTCGGCGT-GTC-GT-A-TGAC-TCCT---TGGTGAC--ATCACAAg
gi|7096 : aaacatcccACGTCAC-AATTAAAA-GG-AG-A-CGT-AA--TA-T--T--G-AAAA-T-TTCGGCGT-GTC-GTA-T-GAC-TC-CT----------T-G--G-T-GACA----T----CA-CAA-TTGAAAttgaaag
gi|7097 : aaacatccctgcaaagagatggtgtattgaaatttcgaagcctctgttaagtg-GG-AG-A---T-GA--TG-TAAT--G-AAA--T-TCCGAAGC-------------C-TCTGT----------T-A--AGT-GACG----T----CA-CAA-TT-AAAAGGAGACCT-AATA-TT-G-AAA---A-T-TT-GGGGC-GTT-GT-A-TGAC-TCGT---TGGTGAC--ATCACAAg
gi|7097 : aaacatccctgcacACGTCAC-AATTAAAA-GG-AG-A-CCT-AA--TA-T--T--G-AAAA-T-TT-GGGGC-GTT-GTA-T-GAC-TC-GT----------T-G--G-T-GACA----T----CA-CAA-TTGAAAttgaaag
gi|7098 : aaacatccctgcacggagatgatgtaatgaaattccgaagcctctgttaagtg--TA-T--T--G-AACA-C-TCCGAAGC-CT--GTA-T-AA----------------------G-T-GACG----T----CA-CAA-TT-AAAAGGAGAC-T-AATA-AT-G-AAA---A-T-TTTGGGGC-GGC-GTCT-TGAC-TCGT---TGGTGACC--TCACAAg
gi|7098 : aaacatcctgcacggagattggtgACGTCAC-AATTAAAA-GG-AG-A-C-T-AA--TA-A--T--G-AAAA-T-TTTGGGGC-GGC-GTCTT-GAC-TC-GT----------T-G--G-T-GACC----T----CA-CAA-TTGAAAttgaaag
gi|7099 : aaacatcctgcacggagattggtgtattgaacactccgaagcctgtataagtg-T-GACG----T----CA-CA--TTGAAAAGGAGA-CT-AATATTT-G-AAA---A-CGTTTGGGGCGGTC-GT-A-TGACTTCGT---TGGTg
gi|7099 : aaacatccctgcaagagaggtgtatcaaatgtgaaatttcaaagccctctgtttaagACGTCAC-A-TTGAAAAGG-AG-A-C-T-AA--TATT--T--G-AAAA-CGTTTGGGGCGGTC-GTA-T-GACTTC-GT----------T-GGTT-T-GACA----T----CC-CCA-ATGAAAttgacatccccaatgaaag
gi|7100 : aaacatccctgcaagagaggtgtatcaaatgtgaaatttcaaagccctctgtttaagtgACGTCACCAATTAAAA-GG-AA-AACAT-AA--TA-T--T--A-AAAT-T-TTCGGGAA-GAC-GT--T-GAC-TTTGT----------T-G--T-G-AACA----T----CA-CAA-TTGAAAg
gi|7101 : aaacatccctgcaaaggatatggtgtattgtattccagcctctgttaggtgACGTCAC-AGTTGAAC-GG-AT-A-TAA-AG--TA-T--TTTG-AAAA-T-TTCTTGGC-GTC-ATA-T-GCC-TG-GT----------A-A--G-T-GACG----T----CA-CAG-TTGAAAg
gi|7102 : aaacacccctgctcggatatggtgtattgaaattctgtaccctatgtacgtg--TA-T--T--G-AAA----TTCCGAGC-GTC-TTT-T-AA----------------------G-T-GA-G----T----CATCAA-T--AAAAGGA-ACCT-A-TA-TTAG-AAAGAAA-T-TTCGGGAC-GTT-GT---TGAC-TCATTTCTGTCGACC--TCACAg
gi|7103 : aaacattcccgcatggagataggtgATGTCAC-AGTTGAAC-GG-AG-G-CAT-AA--TA-T--T--G-AAAA-T-TTCTGGGC-GTC-ATA-T-GCT-TC-GG----------A-A--G-T-AACGTACAT----CA-TAG-TTGAAtatggaa
gi|7104 : aaacatccctgcattgtgattgcaattctatagcccccgttatgtgACATCAC-AGTTGAAT-TG-AG-A-CGT-AA--TA-T--T--G-AAAA---TTCTGGGC-ATC-GTA-T-GCC-TC-GTAAGACTTTAAT-A--G-T-GATG----T----CA-CAG-TTGAA
gi|7106 : aaacatccctgtacagattctgtaccccccgtaagggACGTCAC-AATTGAAA-GG--G-A-CCT-AA--TA-T--T--G-AAAA-T-TTT-GGGC-GTC-ATATT-GAC-TC-GT----------T-G--G-T-GACC----T-----A-CAA-TTGAAAgg
gi|7107 : aacatcccagcaaggagatggtgtattgaaatttcaaagACATCAC-AATTGAAA-GG-AG-A-CCT-AA--T--T--T--GAAAAA-T-TTC-AGGC-GTTAATG-T-GACTTC-GT----------T-T--G-TAAACA----T----CA-C-A-TTG-AAAGGAGACCT-AATA-TT-G-AAA---A-T-TT--AGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7108 : aACATCAC-AATTGAAA-GG-AG-A-CCT-AA--TA-T--T--G-AAAA-T-TTTGGGGC-GTC-GTA-T-GAC-TC-CT----------T-G--T-T-GGCA----T----CA-CAA-TTGAAAAGGAGACCT-AATA-TT-G-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---TTTTGTCCAATCATAA
gi|7110 : TGAAA-GG-AG-A-CAT-AT--TA-T--T--G-ACAA-T-TTTGGGGC-GTC-ATG-T-GAC-TT-GT----------T-G--G-T-GACA----T----CA-CAA-TTG--AAGGATACCT-AATA-TT-G-AAA---A---TTCAGGGC-GTC-AT-G-TGAT-TCGT---T
gi|7111 : AA-GG-AG-A-CGT-AA--TA-T--T--G-AAAA-T-TTCGGCGT-GTC-GTA-T-GAC-TC-CT----------T-G--G-T-GACA----T----CA-CAA-TTG-AAAGGAGACCT-AATA-TT-G-AAA---A-T-TTTGGGGC-GTC-GT-A-TGAC-TCCT---TGTTGGC--ATCACAA
gi|7112 : AA-GG-AG-A-CCT-AA--TA-T--T--G-AAAA-T-TT-GGGGC-GTT-GTA-T-GAC-TC-GT----------T-G--G-T-GACA----T----CA-CAA-TTG-AAAGGAGACCA-AATA-TT-G-AAA---A-T-TTCttgaaa
gi|7113 : AA-GG-AG-A-CGT-AA--TA-T--T--G-AAAA-T-TTCGGGAC-GTC-GTA-TTGAC-TC-GT----------T-G--G-T-GACA----T----CA-CAA-TTG-AAAGGAGACCT-AATA-TT-GAAAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---TTTTGTCCAATCATAA
gi|7114 : AA-GG-AA-T-CGTGAA--TA-T--A--T-AAAA-T-TTTCGGAC-GT--GT--T-GAT-TTTGT----------G-G--G-T-GGTG----TTTATCA-CAATTTGAAAGGGAGACTTCAATA-TT---------A-T-----GGGC-GT---T-T-TGAC-TGGT---TGGTGAC--ATCACGA
gi|7115 : A-GG-AG----GT-AAGCTA-T--T--G-GAAA-T-TTCGAGGC-GTC-GCA-T-GAC-TC-GT----------T-A--G-T-AACG----T----CA-CAA-TTG-AAAGGAGACAT-AATG-TT-G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTTTGTCCAATCATAAtt
gi|7116 : --TA-T--T--G-AAA--T-TTCGAAGC-------------C-TCTGT----------TAA--G-T-GACG----T----CA-CAA-TT-AAAAGGAGACGT-AATA-TT-G-AAA---A-T-TTCGGGAC-GTC-GT-ATTGAC-TCGT---TGGTGAC--ATCACAA
gi|7116 : aaacggtgACGTCAC-AATTAAAA-GG-AG-A-CGT-AA--TA-T--T--G-AAAA-T-TTCGGGAC-GTC-GTATT-GAC-TC-GT----------T-G--G-T-GACA----T----CA-CAA-TTGAAAttgaaag
gi|7117 : aaacggtgtattgaaatttcgaagcctctgttaagtg--TA-T--T--A-AAAT-T-TTCGGGAA-GAC-GT--T-GAC-TTTGT----------T-G--T-G-AACA----T----CA-CAA-TTGAAA-GGAGACCT-AAT--TT-GAAAA---A-T-TTC-AGGC-GTTAAT-G-TGACTTCGT---TTGTAAAC-ATCACAg
gi|7118 : --TA-T--T--G-AAAA-T-TTCTGGGC-GTC-ATA-T-GCT-TC-GG----------A-A--G-T-AACG----TACATCA-TAG-TTGAAT-GGAGACAT-AATA-TT-A-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---ttgaaag
gi|7119 : -T-GACG----T----CA-CAG-TTGAAA-GGAGATAT-AATA-TT-A-GAA---A-T-GTCAGGAC-GTC-AT-G-TGAT-TCAT---TTTTGTCCAATCACA
gi|7120 : ctggtaagTCAA-AATGGAAA-GG-AGTA-CGT-AA--TA-T--T--G-AAAA-T-TTCAGGGC-GTC-ATG-T-GAT-TT-GT----------T-
gi|7121 : gtgatTCAC-AATTGAAA-GG-AG-A-CAT-AT--TA-T--T--G-ACAA-T-TTTGGGGC-GTC-ATG-T-GAC-TT-GT----------T-G--G-T-GACA----T----CA-CAA-TTGAA
gi|7122 : gtgata-AATTAGCA-GG-AG----GT-AAGCTA-T--T--G-GAAA-T-TTCGAGGC-GTC-GCA-T-GAC-TC-GT----------T-A--G-T-AACG----T----CA-CAA-TTGAAAgg
gi|7123 : gtaatgctaca-T-GACA----T----CA-CAA-TTGAAA-GGAGACCT-AATA-TT-G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7124 : gAA-TTGTAA-GGAGACCT-AATA-TT-G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTTTGTCCAATCATAA
gi|7125 : -T--T--A-AAAT-T-TTTGGGAC-GTC-GTA-T-GAC-TC-GG----------T-G--G-T-GATA----T----CA-CAA-TTGAAA
gi|7126 : gggaactatct-TTCGGGAA-GAC-GTA-T-GAC-TC-GT----------T-G--G-T-GACA----T----CA-CAA-TTGg
gi|7127 : GC-TTC-ATG-T-GAC-TC-GT----------T-T--G-T-GACA----T----CA-CAA-TTGAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7105 ): AAACATCCCTGCAAGGAGATGGTTAGGTCATTTGTGAAATTCCAAATCCTCGTCGATAAGGTGAAACCTGTTCACATATTAAAGAGGAGATGCCTGAATATTGAAACAAGGTTCTCGGACAAAAACGTATTGACTGTGCTTACGGGACGATCACAACTGATAG
Unaligned ( gi|7109 ): ACCCCTGCAAGGAGCTGGTGTATTGAAAATTTCAGGATTATATCTCAAGTGAGATCATAAT
Alignments
lowQualScore : 111
lowQualScore : 1 1 0 1 33 11 1 22 1 1 33 1 1 1 9 99999999999999 1 1 3333 4444 1 1 1 1 3 3 1 22 1 44 3 333 1 1 1 1 1 666 5 333 6666 888
lowQualScore : . . . . .. .. . .. . . .. . . . . .............. . . .... .... . . . . . . . .. . .. . ... . . . . . ... . ... .... ...
lowQualScore : 7 7 6 7 77 88 3 77 1 2 11 2 2 2 4 33333333333333 1 1 5555 7777 1 1 1 2 6 7 7 44 7 11 5 000 7 7 5 8 8 333 5 222 2222 999
consensus : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
Reference ( family-583 ) : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
gi|7094 : GG-AG-ATGG-TG--TATT--G-AAA--TTTTGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACAT-AA--TA-TT--G-AAA---A-A-TTCGGGGC-GTC-GT-A-TGAC-TCGT---TGG--TGA-C-ATCACGA
gi|7094 : aaacatccctgcatACGTCACAATTAAAAGG-AG-ACAT-AA--TATT--G-AAAA-ATTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-GATT-GAAAttgaaag
gi|7095 : aaacatccctgcatggagatggtgtattgaaattttgaagcctctgttaagtgGG-AG-ATGG-TG--TATT--G-AAAT-TTT--GAGC-------------C-TCTGT----------T-AAGT-GA-CGG---T----CA-C-AATT-AAAAGGCAGAC-T-AA--T--TT--G-AAA---AAT-TTCGGGGC-G-C-GT-A-TGAC-TCGT-----G--TGA-C-ATCACGAg
gi|7095 : aaaaatcctgcatGTCACAATTAAAAGGCAG-AC-T-AA--T-TT--G-AAAAATTTCGGGGCG-C-GTA-T-G-AC-TC-GT--------------GT-GA-CA----T----CA-C-GATT-GAAAttgaaag
gi|7096 : aaaaatcctgcatggagatggtgtattgaaattttgagcctctgttaagtgacgTGCAAAG-AG-ATGG-TG--TATT--G-AAA--TTTCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACGT-AA--TA-TT--G-AAA---A-T-TTCGGCGT-GTC-GT-A-TGAC-TCCT---TGG--TGA-C-ATCACAAg
gi|7096 : aaacatcccACGTCACAATTAAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGCGTGTC-GTA-T-G-AC-TC-CT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7097 : aaacatccctgcaaagagatggtgtattgaaatttcgaagcctctgttaagtgG-ATGT-AA--TG-------AAA-TTCCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TT-GGGGC-GTT-GT-A-TGAC-TCGT---TGG--TGA-C-ATCACAAg
gi|7097 : aaacatccctgcacggagatACGTCACAATTAAAAGG-AG-ACCT-AA--TATT--G-AAAA-TTT-GGGGCGTT-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7098 : aaacatccctgcacggagatgatgtaatgaaattccgaagcctctgttaagtg--TATT--G-AACA-CTCCGAAGCCT--GTA-T-A-A---------------------GT-GA-CG----T----CA-C-AATT--AAAAGGAGAC-T-AA--TA-AT--G-AAA---A-T-TTTGGGGC-GGC-GTCT-TGAC-TCGT---TGG--TGACC--TCACAAg
gi|7099 : aaacatcctgcacggagattggtg-GT-GA-CG----T----CA-C-A-TT-GAAAAGGAGA-CT-AA--TATTT--G-AAA---A-CGTTTGGGGCGGTC-GT-A-TGACTTCGT---TGGTTTGA-C-ATCttgaaag
gi|7100 : aaacatccctgcaagagaggtgtatcaaatgtgaaatttcaaagccctctgtttaaC-TCTGT----------TAG-GT-GA-CG----T----CA-CCAATT-AAAAGGAAAACAT-AA--TA-TT--A-AAA---T-T-TTCGGGAA-GAC-GT---TGACTTTGT---T-G--TGAAC-ATCACAAcccaatgaaag
gi|7101 : aaacatccctgcaaaggatatggtgtattgtattccagc--TATT--G-AAA---TTCTGTAC--C-CTA-T-GTAC--------------------GT-GA-CG----T----CA-C-AGTT-GAAC-GGATA--T-AAAGTA-TTTTG-AAA---A-T-TTCTTGGC-GTC-AT-A-TGCC-TGGT---AAG--TGA-C-GTCACAttgaaag
gi|7101 : aaacacccctgctcggatatggtgACGTCACAGTTGAACGG-AT-ATAA-AG--TATTTTG-AAAA-TTTCTTGGCGTC-ATA-T-G-CC-TG-GT----------A-A-GT-GA-CG----T----CA-C-AGTT-GAAAgttgaaag
gi|7102 : aaacacccctgctcggatatggtgtattgaaattctgtaccctatgtacgtg--TATT--G-AAA---TTCCGAGCGTC-TTT-T-A-A---------------------GT-GA--G----T----CATC-AAT---AAAAGGA-ACCT-A---TA-TTA-G-AAAGAAA-T-TTCGGGAC-GTT-GT---TGAC-TCATTTCTGT--CGACC--TCACAg
gi|7103 : aaacattcccgcatggagataggtgATGTCACAGTTGAACGG-AG-GCAT-AA--TATT--G-AAAA-TTTCTGGGCGTC-ATA-T-G-CT-TC-GG----------A-A-GT-AA-CGTACAT----CA-T-AGTT-GAAtatggaa
gi|7104 : aaacatccctgcattgtgattgcaattctatagcccccgttatgtgACATCACAGTTGAATTG-AG-ACGT-AA--TATT--G-AAAA--TTCTGGGCATC-GTA-T-G-CC-TC-GTAAGACTTTAAT-A-GT-GA-TG----T----CA-C-AGTT-GAA
gi|7106 : aaacatccctgtacagattctgtaccccccgtaagggACGTCACAATTGAAAGG--G-ACCT-AA--TATT--G-AAAA-TTTT-GGGCGTC-ATATT-G-AC-TC-GT----------T-G-GT-GA-CC----T-----A-C-AATT-GAAAgg
gi|7107 : aacatcccagcaaggagatggtgtattgaaatttcaaagACATCACAATTGAAAGG-AG-ACCT-AA--T-TT--GAAAAA-TTTC-AGGCGTTAATG-T-G-ACTTC-GT----------T-T-GTAAA-CA----T----CA-C--ATT-G-AAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TT--AGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7108 : aACATCACAATTGAAAGG-AG-ACCT-AA--TATT--G-AAAA-TTTTGGGGCGTC-GTA-T-G-AC-TC-CT----------T-G-TT-GG-CA----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAA
gi|7110 : TGAAAGG-AG-ACAT-AT--TATT--G-ACAA-TTTTGGGGCGTC-ATG-T-G-AC-TT-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G--AAGGATACCT-AA--TA-TT--G-AAA---A---TTCAGGGC-GTC-AT-G-TGAT-TCGT---T
gi|7111 : AAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGCGTGTC-GTA-T-G-AC-TC-CT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTTGGGGC-GTC-GT-A-TGAC-TCCT---TGT--TGG-C-ATCACAA
gi|7112 : AAGG-AG-ACCT-AA--TATT--G-AAAA-TTT-GGGGCGTT-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCA-AA--TA-TT--G-AAA---A-T-TTCttgaaa
gi|7113 : AAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGACGTC-GTA-TTG-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCT-AA--TA-TT--GAAAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---TTT--TGTCCAATCATAA
gi|7114 : AAGG-AA-TCGTGAA--TATA--T-AAAA-TTTTCGGACGT--GT--T-G-AT-TTTGT----------G-G-GT-GG-TG----TTTATCA-C-AATTTGAAAGGGAGACTTCAA--TA-TT----------A-T-----GGGC-GT---T-T-TGAC-TGGT---TGG--TGA-C-ATCACGA
gi|7115 : AGG-AG---GT-AAGCTATT--G-GAAA-TTTCGAGGCGTC-GCA-T-G-AC-TC-GT----------T-A-GT-AA-CG----T----CA-C-AATT-G-AAAGGAGACAT-AA--TG-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAAtt
gi|7116 : --TATT--G-AAA--TTTCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACGT-AA--TA-TT--G-AAA---A-T-TTCGGGAC-GTC-GT-ATTGAC-TCGT---TGG--TGA-C-ATCACAA
gi|7116 : aaacggtgACGTCACAATTAAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGACGTC-GTATT-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7117 : aaacggtgtattgaaatttcgaagcctctgttaagtg--TATT--A-AAAT-TTTCGGGAAGAC-GT--T-G-AC-TTTGT----------T-G--T-GAACA----T----CA-C-AATT-G-AAAGGAGACCT-AA--T--TT--GAAAA---A-T-TTC-AGGC-GTTAAT-G-TGACTTCGT---TTG--TAAAC-ATCACAg
gi|7118 : --TATT--G-AAAA-TTTCTGGGCGTC-ATA-T-G-CT-TC-GG----------A-A-GT-AA-CG----TACATCA-T-AGTT-GAAT-GGAGACAT-AA--TA-TT--A-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---ttgaaag
gi|7119 : -GT-GA-CG----T----CA-C-AGTT-GAAA-GGAGATAT-AA--TA-TT--A-GAA---A-T-GTCAGGAC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCACA
gi|7120 : ctggtaaTCAAAATGGAAAGG-AGTACGT-AA--TATT--G-AAAA-TTTCAGGGCGTC-ATG-T-G-AT-TT-GT----------T-
gi|7121 : gtgatTCACAATTGAAAGG-AG-ACAT-AT--TATT--G-ACAA-TTTTGGGGCGTC-ATG-T-G-AC-TT-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAA
gi|7122 : gtgataAATTAGCAGG-AG---GT-AAGCTATT--G-GAAA-TTTCGAGGCGTC-GCA-T-G-AC-TC-GT----------T-A-GT-AA-CG----T----CA-C-AATT-GAAAgg
gi|7123 : gtaatgctaca-GT-GA-CA----T----CA-C-AATT-GAAA-GGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7124 : -AATT-GTAA-GGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAA
gi|7125 : TT--A-AAAT-TTTTGGGACGTC-GTA-T-G-AC-TC-GG----------T-G-GT-GA-TA----T----CA-C-AATT-GAAA
gi|7126 : gggaactatctTTCGGGAAGAC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-Gg
gi|7127 : GCTTC-ATG-T-G-AC-TC-GT----------T-T-GT-GA-CA----T----CA-C-AATT-GAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7105 ): AAACATCCCTGCAAGGAGATGGTTAGGTCATTTGTGAAATTCCAAATCCTCGTCGATAAGGTGAAACCTGTTCACATATTAAAGAGGAGATGCCTGAATATTGAAACAAGGTTCTCGGACAAAAACGTATTGACTGTGCTTACGGGACGATCACAACTGATAG
Unaligned ( gi|7109 ): ACCCCTGCAAGGAGCTGGTGTATTGAAAATTTCAGGATTATATCTCAAGTGAGATCATAAT
Alignments
lowQualScore : 111
lowQualScore : 1 1 0 1 33 11 1 22 1 1 33 1 1 1 9 99999999999999 1 1 3333 4444 1 1 1 1 3 3 1 22 1 44 3 333 1 1 1 1 1 666 5 333 6666 888
lowQualScore : . . . . .. .. . .. . . .. . . . . .............. . . .... .... . . . . . . . .. . .. . ... . . . . . ... . ... .... ...
lowQualScore : 7 7 6 7 77 88 3 77 1 2 11 2 2 2 4 33333333333333 1 1 5555 7777 1 1 1 2 6 7 7 44 7 11 5 000 7 7 5 8 8 333 5 222 2222 999
consensus : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
Reference ( family-583 ) : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
gi|7094 : GG-AG-ATGG-TG--TATT--G-AAA--TTTTGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACAT-AA--TA-TT--G-AAA---A-A-TTCGGGGC-GTC-GT-A-TGAC-TCGT---TGG--TGA-C-ATCACGA
gi|7094 : aaacatccctgcatACGTCACAATTAAAAGG-AG-ACAT-AA--TATT--G-AAAA-ATTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-GATT-GAAAttgaaag
gi|7095 : aaacatccctgcatggagatggtgtattgaaattttgaagcctctgttaagtgGG-AG-ATGG-TG--TATT--G-AAAT-TTT--GAGC-------------C-TCTGT----------T-AAGT-GA-CGG---T----CA-C-AATT-AAAAGGCAGAC-T-AA--T--TT--G-AAA---AAT-TTCGGGGC-G-C-GT-A-TGAC-TCGT-----G--TGA-C-ATCACGAg
gi|7095 : aaaaatcctgcatGTCACAATTAAAAGGCAG-AC-T-AA--T-TT--G-AAAAATTTCGGGGCG-C-GTA-T-G-AC-TC-GT--------------GT-GA-CA----T----CA-C-GATT-GAAAttgaaag
gi|7096 : aaaaatcctgcatggagatggtgtattgaaattttgagcctctgttaagtgacgTGCAAAG-AG-ATGG-TG--TATT--G-AAA--TTTCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACGT-AA--TA-TT--G-AAA---A-T-TTCGGCGT-GTC-GT-A-TGAC-TCCT---TGG--TGA-C-ATCACAAg
gi|7096 : aaacatcccACGTCACAATTAAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGCGTGTC-GTA-T-G-AC-TC-CT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7097 : aaacatccctgcaaagagatggtgtattgaaatttcgaagcctctgttaagtgG-ATGT-AA--TG-------AAA-TTCCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TT-GGGGC-GTT-GT-A-TGAC-TCGT---TGG--TGA-C-ATCACAAg
gi|7097 : aaacatccctgcacggagatACGTCACAATTAAAAGG-AG-ACCT-AA--TATT--G-AAAA-TTT-GGGGCGTT-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7098 : aaacatccctgcacggagatgatgtaatgaaattccgaagcctctgttaagtg--TATT--G-AACA-CTCCGAAGCCT--GTA-T-A-A---------------------GT-GA-CG----T----CA-C-AATT--AAAAGGAGAC-T-AA--TA-AT--G-AAA---A-T-TTTGGGGC-GGC-GTCT-TGAC-TCGT---TGG--TGACC--TCACAAg
gi|7099 : aaacatcctgcacggagattggtg-GT-GA-CG----T----CA-C-A-TT-GAAAAGGAGA-CT-AA--TATTT--G-AAA---A-CGTTTGGGGCGGTC-GT-A-TGACTTCGT---TGGTTTGA-C-ATCttgaaag
gi|7100 : aaacatccctgcaagagaggtgtatcaaatgtgaaatttcaaagccctctgtttaaC-TCTGT----------TAG-GT-GA-CG----T----CA-CCAATT-AAAAGGAAAACAT-AA--TA-TT--A-AAA---T-T-TTCGGGAA-GAC-GT---TGACTTTGT---T-G--TGAAC-ATCACAAcccaatgaaag
gi|7101 : aaacatccctgcaaaggatatggtgtattgtattccagc--TATT--G-AAA---TTCTGTAC--C-CTA-T-GTAC--------------------GT-GA-CG----T----CA-C-AGTT-GAAC-GGATA--T-AAAGTA-TTTTG-AAA---A-T-TTCTTGGC-GTC-AT-A-TGCC-TGGT---AAG--TGA-C-GTCACAttgaaag
gi|7101 : aaacacccctgctcggatatggtgACGTCACAGTTGAACGG-AT-ATAA-AG--TATTTTG-AAAA-TTTCTTGGCGTC-ATA-T-G-CC-TG-GT----------A-A-GT-GA-CG----T----CA-C-AGTT-GAAAgttgaaag
gi|7102 : aaacacccctgctcggatatggtgtattgaaattctgtaccctatgtacgtg--TATT--G-AAA---TTCCGAGCGTC-TTT-T-A-A---------------------GT-GA--G----T----CATC-AAT---AAAAGGA-ACCT-A---TA-TTA-G-AAAGAAA-T-TTCGGGAC-GTT-GT---TGAC-TCATTTCTGT--CGACC--TCACAg
gi|7103 : aaacattcccgcatggagataggtgATGTCACAGTTGAACGG-AG-GCAT-AA--TATT--G-AAAA-TTTCTGGGCGTC-ATA-T-G-CT-TC-GG----------A-A-GT-AA-CGTACAT----CA-T-AGTT-GAAtatggaa
gi|7104 : aaacatccctgcattgtgattgcaattctatagcccccgttatgtgACATCACAGTTGAATTG-AG-ACGT-AA--TATT--G-AAAA--TTCTGGGCATC-GTA-T-G-CC-TC-GTAAGACTTTAAT-A-GT-GA-TG----T----CA-C-AGTT-GAA
gi|7106 : aaacatccctgtacagattctgtaccccccgtaagggACGTCACAATTGAAAGG--G-ACCT-AA--TATT--G-AAAA-TTTT-GGGCGTC-ATATT-G-AC-TC-GT----------T-G-GT-GA-CC----T-----A-C-AATT-GAAAgg
gi|7107 : aacatcccagcaaggagatggtgtattgaaatttcaaagACATCACAATTGAAAGG-AG-ACCT-AA--T-TT--GAAAAA-TTTC-AGGCGTTAATG-T-G-ACTTC-GT----------T-T-GTAAA-CA----T----CA-C--ATT-G-AAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TT--AGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7108 : aACATCACAATTGAAAGG-AG-ACCT-AA--TATT--G-AAAA-TTTTGGGGCGTC-GTA-T-G-AC-TC-CT----------T-G-TT-GG-CA----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAA
gi|7110 : TGAAAGG-AG-ACAT-AT--TATT--G-ACAA-TTTTGGGGCGTC-ATG-T-G-AC-TT-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G--AAGGATACCT-AA--TA-TT--G-AAA---A---TTCAGGGC-GTC-AT-G-TGAT-TCGT---T
gi|7111 : AAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGCGTGTC-GTA-T-G-AC-TC-CT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTTGGGGC-GTC-GT-A-TGAC-TCCT---TGT--TGG-C-ATCACAA
gi|7112 : AAGG-AG-ACCT-AA--TATT--G-AAAA-TTT-GGGGCGTT-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCA-AA--TA-TT--G-AAA---A-T-TTCttgaaa
gi|7113 : AAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGACGTC-GTA-TTG-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCT-AA--TA-TT--GAAAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---TTT--TGTCCAATCATAA
gi|7114 : AAGG-AA-TCGTGAA--TATA--T-AAAA-TTTTCGGACGT--GT--T-G-AT-TTTGT----------G-G-GT-GG-TG----TTTATCA-C-AATTTGAAAGGGAGACTTCAA--TA-TT----------A-T-----GGGC-GT---T-T-TGAC-TGGT---TGG--TGA-C-ATCACGA
gi|7115 : AGG-AG---GT-AAGCTATT--G-GAAA-TTTCGAGGCGTC-GCA-T-G-AC-TC-GT----------T-A-GT-AA-CG----T----CA-C-AATT-G-AAAGGAGACAT-AA--TG-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAAtt
gi|7116 : --TATT--G-AAA--TTTCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACGT-AA--TA-TT--G-AAA---A-T-TTCGGGAC-GTC-GT-ATTGAC-TCGT---TGG--TGA-C-ATCACAA
gi|7116 : aaacggtgACGTCACAATTAAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGACGTC-GTATT-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7117 : aaacggtgtattgaaatttcgaagcctctgttaagtg--TATT--A-AAAT-TTTCGGGAAGAC-GT--T-G-AC-TTTGT----------T-G--T-GAACA----T----CA-C-AATT-G-AAAGGAGACCT-AA--T--TT--GAAAA---A-T-TTC-AGGC-GTTAAT-G-TGACTTCGT---TTG--TAAAC-ATCACAg
gi|7118 : --TATT--G-AAAA-TTTCTGGGCGTC-ATA-T-G-CT-TC-GG----------A-A-GT-AA-CG----TACATCA-T-AGTT-GAAT-GGAGACAT-AA--TA-TT--A-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---ttgaaag
gi|7119 : -GT-GA-CG----T----CA-C-AGTT-GAAA-GGAGATAT-AA--TA-TT--A-GAA---A-T-GTCAGGAC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCACA
gi|7120 : ctggtaaTCAAAATGGAAAGG-AGTACGT-AA--TATT--G-AAAA-TTTCAGGGCGTC-ATG-T-G-AT-TT-GT----------T-
gi|7121 : gtgatTCACAATTGAAAGG-AG-ACAT-AT--TATT--G-ACAA-TTTTGGGGCGTC-ATG-T-G-AC-TT-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAA
gi|7122 : gtgataAATTAGCAGG-AG---GT-AAGCTATT--G-GAAA-TTTCGAGGCGTC-GCA-T-G-AC-TC-GT----------T-A-GT-AA-CG----T----CA-C-AATT-GAAAgg
gi|7123 : gtaatgctaca-GT-GA-CA----T----CA-C-AATT-GAAA-GGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7124 : -AATT-GTAA-GGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAA
gi|7125 : TT--A-AAAT-TTTTGGGACGTC-GTA-T-G-AC-TC-GG----------T-G-GT-GA-TA----T----CA-C-AATT-GAAA
gi|7126 : gggaactatctTTCGGGAAGAC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-Gg
gi|7127 : GCTTC-ATG-T-G-AC-TC-GT----------T-T-GT-GA-CA----T----CA-C-AATT-GAAA
blockSeqs : C T G GC TT A AA G A AT T T T T AAGACTTTAATA A A TACA TTAT T C T A G G C AG T TT A GAA A G G G A CT T TTC GGTT CCA
blockSeqs : . . . GC . . A G . AT . . . T TAA . . G ACAT . . . A A C . . . A A . . . G . . AT T . GG CCA
blockSeqs : . . . . . . T G . A . . . T TAA . . . . . . . A A C . . . . . . . . G . . A T . GG CCA
blockSeqs : . . . . . . A G . A . . . T TAA . . . . . . . A A A . . . . . . . . G . . A . . GG CCA
blockSeqs : . . . . . . A C . A . . . T TAG . . . . . . . A A C . . . . . . . . G . . A . . AG CCA
blockSeqs : . . . . . . A G . A . . . T TAA . . . . . . . A G C . . . . . . . . G . . A . . GT CC
blockSeqs : . . . . . . A G . A . . . T TG . . . . . . . A A C . . . . . . . . T . . A . . TT AC
blockSeqs : . . . . . . A G . A . . . . TG . . . . . . . A A C . . . . . . . . G . . G . . GT CC
blockSeqs : . . . . . . A A . A . . . . TG . . . . . . . A A C . . . . . . . . A . . G . . TT AC
blockSeqs : . . . . . . A G . T . . . . AA . . . . . . . A A C . . . . . . . . A . . G . . GG C
blockSeqs : . . . . . . A G . A . . . . AA . . . . . . . A A C . . . . . . . . G . . A . . TT C
blockSeqs : . . . . . . A G . A . . . . TG . . . . . . . A A T . . . . . . . . A . . G . . GG C
blockSeqs : . . . . . . A G . G . . . . TT . . . . . . . A A A . . . . . . . . A . . T . . TG C
blockSeqs : . . . . . . A G . A . . . . TG . . . . . . . A G G . . . . . . . . G . . G . . TT C
blockSeqs : . . . . . . A G . G . . . . TG . . . . . . . A A C . . . . . . . . A . . G . . TT C
blockSeqs : . . . . . . A G . A . . . . TG . . . . . . . A A A . . . . . . . . A . . G . . G C
blockSeqs : . . . . . . A G . A . . . . TG . . . . . . . A A A . . . . . . . . A . . G . . G C
blockSeqs : . . . . . . A G . A . . . . TG . . . . . . . A . C . . . . . . . . A . . G . .
blockSeqs : . . . . . . A G . A . . . . GG . . . . . . . A . C . . . . . . . . . . . G . .
blockSeqs : . . . . . . A G . A . . . . TA . . . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . T G . G . . . . TG . . . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A G . G . . . . TG . . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . A G . A . . . . AA . . . . . . . A
blockSeqs : . . . A G . A . . . . TG . . . . . . . A
blockSeqs : . . . A G . A . . . . TA . . . . . . . A
blockSeqs : . . . T G . G . . . . TG . . . . . . . T
blockSeqs : . . . . T . . . . . . TG . . . . . . . A
blockSeqs : . . . . . . . . . . . TT . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . .
blockSeqCons : A* A* TG************
originalCons : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
finalCons : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GTTG------------GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7105 ): AAACATCCCTGCAAGGAGATGGTTAGGTCATTTGTGAAATTCCAAATCCTCGTCGATAAGGTGAAACCTGTTCACATATTAAAGAGGAGATGCCTGAATATTGAAACAAGGTTCTCGGACAAAAACGTATTGACTGTGCTTACGGGACGATCACAACTGATAG
Unaligned ( gi|7109 ): ACCCCTGCAAGGAGCTGGTGTATTGAAAATTTCAGGATTATATCTCAAGTGAGATCATAAT
Alignments
lowQualScore : 111
lowQualScore : 1 1 0 1 33 11 1 22 1 1 33 1 1 1 9 99999999999999 1 1 3333 4444 1 1 1 1 3 3 1 22 1 44 3 333 1 1 1 1 1 666 5 333 6666 888
lowQualScore : . . . . .. .. . .. . . .. . . . . .............. . . .... .... . . . . . . . .. . .. . ... . . . . . ... . ... .... ...
lowQualScore : 7 7 6 7 77 88 3 77 1 2 11 2 2 2 4 33333333333333 1 1 5555 7777 1 1 1 2 6 7 7 44 7 11 5 000 7 7 5 8 8 333 5 222 2222 999
consensus : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
Reference ( family-583 ) : ACGTCACAATTGAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CG----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCGGGGC-GTC-GT-G-TGAC-TCGT---TGG--TGACC-ATCACAA
gi|7094 : GG-AG-ATGG-TG--TATT--G-AAA--TTTTGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACAT-AA--TA-TT--G-AAA---A-A-TTCGGGGC-GTC-GT-A-TGAC-TCGT---TGG--TGA-C-ATCACGA
gi|7094 : aaacatccctgcatACGTCACAATTAAAAGG-AG-ACAT-AA--TATT--G-AAAA-ATTCGGGGCGTC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-GATT-GAAAttgaaag
gi|7095 : aaacatccctgcatggagatggtgtattgaaattttgaagcctctgttaagtgGG-AG-ATGG-TG--TATT--G-AAAT-TTT--GAGC-------------C-TCTGT----------T-AAGT-GA-CGG---T----CA-C-AATT-AAAAGGCAGAC-T-AA--T--TT--G-AAA---AAT-TTCGGGGC-G-C-GT-A-TGAC-TCGT-----G--TGA-C-ATCACGAg
gi|7095 : aaaaatcctgcatGTCACAATTAAAAGGCAG-AC-T-AA--T-TT--G-AAAAATTTCGGGGCG-C-GTA-T-G-AC-TC-GT--------------GT-GA-CA----T----CA-C-GATT-GAAAttgaaag
gi|7096 : aaaaatcctgcatggagatggtgtattgaaattttgagcctctgttaagtgacgTGCAAAG-AG-ATGG-TG--TATT--G-AAA--TTTCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACGT-AA--TA-TT--G-AAA---A-T-TTCGGCGT-GTC-GT-A-TGAC-TCCT---TGG--TGA-C-ATCACAAg
gi|7096 : aaacatcccACGTCACAATTAAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGCGTGTC-GTA-T-G-AC-TC-CT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7097 : aaacatccctgcaaagagatggtgtattgaaatttcgaagcctctgttaagtgG-ATGT-AA--TG-------AAA-TTCCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TT-GGGGC-GTT-GT-A-TGAC-TCGT---TGG--TGA-C-ATCACAAg
gi|7097 : aaacatccctgcacggagatACGTCACAATTAAAAGG-AG-ACCT-AA--TATT--G-AAAA-TTT-GGGGCGTT-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7098 : aaacatccctgcacggagatgatgtaatgaaattccgaagcctctgttaagtg--TATT--G-AACA-CTCCGAAGCCT--GTA-T-A-A---------------------GT-GA-CG----T----CA-C-AATT--AAAAGGAGAC-T-AA--TA-AT--G-AAA---A-T-TTTGGGGC-GGC-GTCT-TGAC-TCGT---TGG--TGACC--TCACAAg
gi|7099 : aaacatcctgcacggagattggtg-GT-GA-CG----T----CA-C-A-TT-GAAAAGGAGA-CT-AA--TATTT--G-AAA---A-CGTTTGGGGCGGTC-GT-A-TGACTTCGT---TGGTTTGA-C-ATCttgaaag
gi|7100 : aaacatccctgcaagagaggtgtatcaaatgtgaaatttcaaagccctctgtttaaC-TCTGT----------TAG-GT-GA-CG----T----CA-CCAATT-AAAAGGAAAACAT-AA--TA-TT--A-AAA---T-T-TTCGGGAA-GAC-GT---TGACTTTGT---T-G--TGAAC-ATCACAAcccaatgaaag
gi|7101 : aaacatccctgcaaaggatatggtgtattgtattccagc--TATT--G-AAA---TTCTGTAC--C-CTA-T-GTAC--------------------GT-GA-CG----T----CA-C-AGTT-GAAC-GGATA--T-AAAGTA-TTTTG-AAA---A-T-TTCTTGGC-GTC-AT-A-TGCC-TGGT---AAG--TGA-C-GTCACAttgaaag
gi|7101 : aaacacccctgctcggatatggtgACGTCACAGTTGAACGG-AT-ATAA-AG--TATTTTG-AAAA-TTTCTTGGCGTC-ATA-T-G-CC-TG-GT----------A-A-GT-GA-CG----T----CA-C-AGTT-GAAAgttgaaag
gi|7102 : aaacacccctgctcggatatggtgtattgaaattctgtaccctatgtacgtg--TATT--G-AAA---TTCCGAGCGTC-TTT-T-A-A---------------------GT-GA--G----T----CATC-AAT---AAAAGGA-ACCT-A---TA-TTA-G-AAAGAAA-T-TTCGGGAC-GTT-GT---TGAC-TCATTTCTGT--CGACC--TCACAg
gi|7103 : aaacattcccgcatggagataggtgATGTCACAGTTGAACGG-AG-GCAT-AA--TATT--G-AAAA-TTTCTGGGCGTC-ATA-T-G-CT-TC-GG----------A-A-GT-AA-CGTACAT----CA-T-AGTT-GAAtatggaa
gi|7104 : aaacatccctgcattgtgattgcaattctatagcccccgttatgtgACATCACAGTTGAATTG-AG-ACGT-AA--TATT--G-AAAA--TTCTGGGCATC-GTA-T-G-CC-TC-GTAAGACTTTAAT-A-GT-GA-TG----T----CA-C-AGTT-GAA
gi|7106 : aaacatccctgtacagattctgtaccccccgtaagggACGTCACAATTGAAAGG--G-ACCT-AA--TATT--G-AAAA-TTTT-GGGCGTC-ATATT-G-AC-TC-GT----------T-G-GT-GA-CC----T-----A-C-AATT-GAAAgg
gi|7107 : aacatcccagcaaggagatggtgtattgaaatttcaaagACATCACAATTGAAAGG-AG-ACCT-AA--T-TT--GAAAAA-TTTC-AGGCGTTAATG-T-G-ACTTC-GT----------T-T-GTAAA-CA----T----CA-C--ATT-G-AAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TT--AGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7108 : aACATCACAATTGAAAGG-AG-ACCT-AA--TATT--G-AAAA-TTTTGGGGCGTC-GTA-T-G-AC-TC-CT----------T-G-TT-GG-CA----T----CA-C-AATT-GAAAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAA
gi|7110 : TGAAAGG-AG-ACAT-AT--TATT--G-ACAA-TTTTGGGGCGTC-ATG-T-G-AC-TT-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G--AAGGATACCT-AA--TA-TT--G-AAA---A---TTCAGGGC-GTC-AT-G-TGAT-TCGT---T
gi|7111 : AAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGCGTGTC-GTA-T-G-AC-TC-CT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCT-AA--TA-TT--G-AAA---A-T-TTTGGGGC-GTC-GT-A-TGAC-TCCT---TGT--TGG-C-ATCACAA
gi|7112 : AAGG-AG-ACCT-AA--TATT--G-AAAA-TTT-GGGGCGTT-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCA-AA--TA-TT--G-AAA---A-T-TTCttgaaa
gi|7113 : AAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGACGTC-GTA-TTG-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-G-AAAGGAGACCT-AA--TA-TT--GAAAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---TTT--TGTCCAATCATAA
gi|7114 : AAGG-AA-TCGTGAA--TATA--T-AAAA-TTTTCGGACGT--GT--T-G-AT-TTTGT----------G-G-GT-GG-TG----TTTATCA-C-AATTTGAAAGGGAGACTTCAA--TA-TT----------A-T-----GGGC-GT---T-T-TGAC-TGGT---TGG--TGA-C-ATCACGA
gi|7115 : AGG-AG---GT-AAGCTATT--G-GAAA-TTTCGAGGCGTC-GCA-T-G-AC-TC-GT----------T-A-GT-AA-CG----T----CA-C-AATT-G-AAAGGAGACAT-AA--TG-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAAtt
gi|7116 : --TATT--G-AAA--TTTCGAAGC-------------C-TCTGT----------T-AAGT-GA-CG----T----CA-C-AATT--AAAAGGAGACGT-AA--TA-TT--G-AAA---A-T-TTCGGGAC-GTC-GT-ATTGAC-TCGT---TGG--TGA-C-ATCACAA
gi|7116 : aaacggtgACGTCACAATTAAAAGG-AG-ACGT-AA--TATT--G-AAAA-TTTCGGGACGTC-GTATT-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAAAttgaaag
gi|7117 : aaacggtgtattgaaatttcgaagcctctgttaagtg--TATT--A-AAAT-TTTCGGGAAGAC-GT--T-G-AC-TTTGT----------T-G--T-GAACA----T----CA-C-AATT-G-AAAGGAGACCT-AA--T--TT--GAAAA---A-T-TTC-AGGC-GTTAAT-G-TGACTTCGT---TTG--TAAAC-ATCACAg
gi|7118 : --TATT--G-AAAA-TTTCTGGGCGTC-ATA-T-G-CT-TC-GG----------A-A-GT-AA-CG----TACATCA-T-AGTT-GAAT-GGAGACAT-AA--TA-TT--A-AAA---A-T-TTCAGGGT-GTC-AT-G-TGAT-TCAT---ttgaaag
gi|7119 : -GT-GA-CG----T----CA-C-AGTT-GAAA-GGAGATAT-AA--TA-TT--A-GAA---A-T-GTCAGGAC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCACA
gi|7120 : ctggtaaTCAAAATGGAAAGG-AGTACGT-AA--TATT--G-AAAA-TTTCAGGGCGTC-ATG-T-G-AT-TT-GT----------T-
gi|7121 : gtgatTCACAATTGAAAGG-AG-ACAT-AT--TATT--G-ACAA-TTTTGGGGCGTC-ATG-T-G-AC-TT-GT----------T-G-GT-GA-CA----T----CA-C-AATT-GAA
gi|7122 : gtgataAATTAGCAGG-AG---GT-AAGCTATT--G-GAAA-TTTCGAGGCGTC-GCA-T-G-AC-TC-GT----------T-A-GT-AA-CG----T----CA-C-AATT-GAAAgg
gi|7123 : gtaatgctaca-GT-GA-CA----T----CA-C-AATT-GAAA-GGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCGT---Tg
gi|7124 : -AATT-GTAA-GGAGACCT-AA--TA-TT--G-AAA---A-T-TTCAGGGC-GTC-AT-G-TGAT-TCAT---TTT--TGTCCAATCATAA
gi|7125 : TT--A-AAAT-TTTTGGGACGTC-GTA-T-G-AC-TC-GG----------T-G-GT-GA-TA----T----CA-C-AATT-GAAA
gi|7126 : gggaactatctTTCGGGAAGAC-GTA-T-G-AC-TC-GT----------T-G-GT-GA-CA----T----CA-C-AATT-Gg
gi|7127 : GCTTC-ATG-T-G-AC-TC-GT----------T-T-GT-GA-CA----T----CA-C-AATT-GAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7105 ): AAACATCCCTGCAAGGAGATGGTTAGGTCATTTGTGAAATTCCAAATCCTCGTCGATAAGGTGAAACCTGTTCACATATTAAAGAGGAGATGCCTGAATATTGAAACAAGGTTCTCGGACAAAAACGTATTGACTGTGCTTACGGGACGATCACAACTGATAG
Unaligned ( gi|7109 ): ACCCCTGCAAGGAGCTGGTGTATTGAAAATTTCAGGATTATATCTCAAGTGAGATCATAAT