lowQualScore : 111111111111
lowQualScore : 6 22 333 4 000000000000 1 1 1 66666666 1 55 1 6666666 1 55 22 1 1 222 2 2 2 1 11 11 1 1 1 1 6
lowQualScore : . .. ... . ............ . . . ........ . .. . ....... . .. .. . . ... . . . . .. .. . . . . .
lowQualScore : 9 88 555 0 222222222222 9 9 9 99999999 9 55 9 2222222 9 55 55 8 6 222 4 2 2 1 55 55 1 1 1 1 3
consensus : TTCTTCTTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GGTG-TTTT-------TCTCGG-TTGAACG-GG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-GA-GGG-AT-AATCGCGTTTTAGCGAGA
Reference ( gi|100293 ) : TTCTTCTTTCTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AGTG-TTTT-------TCTCGA-TTGAACA-GG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-GA-GGG-AT-AATCGCCTTTTAGCGAGA
gi|100295 : TTCTTCTTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AT-T-T--------C-CTC-GGTG-TTTT-------TCTCGA-TTGAACG-GG--A-TA-A-T---TT-T-T-CTC-G--CTAG--A-GA-GGG-AT-AATCGCCTTTTAGCGAGA
gi|100294 : TTCTTCTTTTTCACG--CCA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GATG-TTTT-------TCTCGA-TTAAACG-GG--A-TGTA-T---TT-T-G-CTC-G--CTAG--A-GA-GGG-AT-AATCACGTTTTAGAGAGA
gi|100296 : TTCTTCTTTTTAACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GGTG-TTTT-------TCTCGA-TTGAACG-GG--A-TATA-T---TT-T-T-CTC-A--CTAG--A-GA-GAG-AT-AATCG
gi|100297 : TTCATTTTTCCCACA--CG------TACAAAT-AT------------GTA-AA-C-T--------C-TTT-AATG-TTTT-------TCTCAG-TTGAACG-GG--A-TATA-C---TT-T-T-CTC-G--TTAG--A-GA-GGG-AT-AATCGCATTTTAGCGAGAgtt
gi|100299 : tttTTCTTCTTTTTCATG--CGA---AGTACAAAT-CA------------GTA-AA-A-T--------C--TC-CGTG-TTTT-------CC--GA-TTGAACG-GG--A-TATA-T---TT-TTT-CTC-G--CTAG--A-GA-GCG-AT-AATCGCATTTTAGCGAGA
gi|100298 : TTTTCCTTTTTCACG--CGA---AGTAAAAAT-ATAGGCCTATATATGAA-AA-T-T--------C-CTC-AGTG-TTTT-------TCTCGG-TTGAACG-GG--A-TATATT---TT-T-T-CTC-G--CTAT--A-CA-GGG-AT-AATCGCGCCTTAGCGAGA
gi|100300 : TTCTTCTTCTTCACA--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AG-G-TTTTCTCTCTCTCTCGG-TTGAACG-AGATA-TATA-T---TT-T-T-CTC-A--CCTT--A-GA-GTG-AT-AATTGTGTTTTAGCAAGA
gi|100301 : TTCTTCTTTTTCACATACAA---AGTACAA-T-GT------------GCA-AA-TAT--------CATTC-AGTG-TTTT--------CTCGG-TTAAG---GG--A-TATT-T---TTGT-T-CTC-G--CTAG--A-GA-GGA-AT-AATCAGCTTTTAGTGAGA
gi|100302 : TTCTTCTTTTTCATG--CAA---AGTAC-AAT-AT------------ATA-AA-T-T--------C-CTCAAGTGTTTTT-------TCTCAG-TTGAACAGGG--A-TA-A-T---TT-T-T-CTC-AGTCTTG--G-CA-GGG-AT-AAT
gi|100303 : TTTTTTTGTTTCACG--CGA---ATTATAAAT-AG------------ATA-AA-A-T--------T-CTCGAATG-TTAT-------TCTCGG-TTGAACG-GT--A-AATA-T---TT-AAT-CTT-G--CTAA--A-GA-GGG-AT-AATAGCATTTTAGTAAGAtcacgtt
gi|100304 : TTGTTCTTTTTCAAG--TGT---AGTATAAAT-AT------------ATA-AG-C-T--------C-ATA-TGTG-TTTT-------CCTCGG-GTGAACG-GG--T-TATA-T---TT-T-T-TAC-G--TTAG--T-GA-GTG-AT-AATTG
gi|100305 : TCTTCTTTTTTACG--CTA---AGGACAAAT-AT------------GTC-AA-T-T--------T-CTC-AGTG-TTTT-------TCTCGA-TTGAACG-GG--G-TATA-T---TT-T-T-CTT-G--CTAGTTA-TA-GGG-AT-
gi|100306 : CTTCTTTTTCACG--CAA---AGTA-AAAT-A-------------GTA-AA-T-T--------C-CTC-GGTG-TTTT-------TCTCGA-TTGAACG-GG--A-TGTA-T---TT-T-T-CTCGG--CTAG--A-GA-GGG-AT-AATCACCTTTTAGCGAG
gi|100307 : CTTCTTT-TCACT--CGA---AATACAATTTAT------------GTA-TA-T-TGTTTTGATT-CTC-GGTG-TTTT-------TCTCGACTTGAGCA-GG--ACTATA-T---TT-T-TGCTC-A--TTAG--ACGAGGGG-ATAAATTGCGTTTTAGCGAG
gi|100308 : CTTCTTTTTCATG--TGA---AATACAAAT-AC------------------------------------------TTT-------TCTCCT-TTGTACA-AG--A-TATA-T---TA-T-T-CTC-G--CTA---A-GA-GGG-AT-
gi|100309 : CTTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GGTG-TTTT-------TCTCGA-TTGAACG-GG--A-TATG-T---TT-T-T-CTG-G--CTAG--A-GA-GGG-AT-AATCGCGTTTTAGCGAGA
gi|100311 : CTTTTTCACT--TGA---AGTACAACCCAT------------ATA-AA-T-T--------C-CTT-AGTG-TTTT-------TCTCAG-TTGAACG-AG--A-TAAA-T---TT-T-T-CTC-A--CTAG--A-GA-GGA-AT-AATCATGTTTTAGCGAGA
gi|100310 : CTTTTTCACG--CAATAAAGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GACG-TTTA-------TCTCGT-ATAACCG-GG--A-TATA-T---TT-T-T--TC-G--CTAG--G-CA-GGG-AT-AATCGCATTTTAGCAAGA
gi|100312 : CTTTTTCACG--CGA---AGTACAAAT-AT------------ATATAATT-T--------C-CTT-GGTA---TT-------TCTCAG-TTGAACG-GG--A-AATA-T---TT-T-T-ATC-
gi|100313 : TTTTCACG--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GGTG-TTTT-------TCTCGA-ATGAACG-GG--A-TAT--T---TT-T-T-CTC----CTAG--A-G
gi|100314 : A-AA-C-T--------C-CTC-GGTG-TTTT-------TCTCGA-TTGAATG-GA--A-TATA-TATGTA-C-T-CTT-G--CTAA--A-GA-GGG-AT-AATTGTGTTTTAGTGAGAgaagtagatgaacgttcta
gi|100315 : CA-GG--A-TAT-------T-T-T-CTC-G--CTAG--A-GA-GGA-AT-AATCACGTTTTATCAAAA
gi|100316 : ATA-T---TC-T-AACTA-G--CTAG--A-GA-GGG-AT-AATCGCGTTTTAGCAAGA
gi|100317 : A-T---TTAT-T-CTG-G--CTAA--A-GA-GGG-AT-AATCGCCTTTTAGCAAGA
gi|100318 : -T---TG-T-T-TTC-A--CTAG--A-GA-GGG-AT-AATTGCGTTTTAGTGAGA
gi|100323 : ---TT-T-T-CTC-G--TTAG--A-GA-GGG-AT-AATCGCCTTTTAGCGAGA
gi|100322 : ---TT-T-T-CTC-G--CTAG--A-GA-GGG-AT-AATCACCTTTTAGCGAGA
gi|100320 : ---TT-T-T-CTT-G--CTAG--A-GA-GGG-AT-AATCGCCTTTTAGCGAGA
gi|100319 : ---TT-T-T-CTC-G--CTAG--A-GA-GGG-AT-AATCGCGTTTTAGCGAGA
gi|100324 : ---TT-T-T-CTC-G--CTAC--A-GA-GGGGAT-AATCGCCTTTTAGCGA
gi|100325 : ---TT-T-T-CTC-G--CTAG--A-GA-GGG-AT-AATCTTGTTTTAGCGAAA
gi|100321 : ---TC-T-T-CTC-G--CTAT--A-GA-GGA-AT-AATCGCATTTTAGTGAGA
gi|100326 : T-T-T-CTT-G--CTAG--A-GA-GGG-AT-AATCGCCTTTCAGCGAGA
gi|100295 : -T-CTC-G--CTAA--A-AG-GCG-AT-TATCCCTCTCTAGCGAGA
gi|100299 : ttcttctttttcacgcgaagtacaaatatgtaatttcctcggtgtttttctcgattgaacgggataatttt-T-CTC-G--CTAA--A-AT-GCG-AT-TATCGCTCTCTAGCGAGA
gi|100322 : ttcttctttttcatgcgaagtacaaatcagtaaaatctccgtgttttccgattgaacgggatatattttt-T-CTC-G--CTAA--A-AG-GTG-AT-TATCCCTCTCTAGCGAGA
gi|100319 : ttt-T-CTC-G--CTAA--A-AC-GCG-AT-TATCCCTCTCTAGCGAGA
Alignments
lowQualScore : 2 22 333 3 999999999999 1 1 1 66666666 1 1 1 1 5555555 22 1 22 1 1 222 2 2 2 1 11 11 1 11 1 1 1 1 1 1 1
lowQualScore : . .. ... . ............ . . . ........ . . . . ....... .. . .. . . ... . . . . .. .. . .. . . . . . . .
lowQualScore : 0 66 333 8 888888888888 8 8 8 66666666 8 8 8 8 9999999 11 7 44 7 5 111 4 4 4 2 77 77 2 77 2 2 2 2 3 3 8
consensus : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
Reference ( family-578 ) : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100293 : TTCTTC-TTTCTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AG-TG-TTTT-------TCTCGA-TTGAAC-AGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100294 : TTCTTC-TTTTTCACG--CCA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GA-TG-TTTT-------TCTCGA-TTAAAC-GGG--A-TGTA-T---TT-T-G-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-ACGTTTTAGAGAGA
gi|100295 : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AT-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TA-A-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100296 : TTCTTC-TTTTTAACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-A--CTAG--A-G--A-G-AG-AT-AA-TC-G-GTT
gi|100297 : TTTTTCATTTTTCCCA--C-A---CGTACAAAT-AT------------GTA-AA-C-T--------C-TTT-AA-TG-TTTT-------TCTCAG-TTGAAC-GGG--A-TATA-C---TT-T-T-CTC-G--TTAG--A-G--A-G-GG-AT-AA-TC-GCATTTTAGCGAGA
gi|100298 : TTTTCC-TTTTTCACG--CGA---AGTAAAAAT-ATAGGCCTATATATGAA-AA-T-T--------C-CTC-AG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATATT---TT-T-T-CTC-G--CTAT--A-C--A-G-GG-AT-AA-TC-GCGCCTTAGCGAGA
gi|100299 : TTCTTC-TTTTTCATG--CGA---AGTACAAAT-CA------------GTA-AA-A-T--------C--TC-CG-TG-TTTT-------CC--GA-TTGAAC-GGG--A-TATA-T---TT-TTT-CTC-G--CTAG--A-G--A-G-CG-AT-AA-TC-GCATTTTAGCGAGA
gi|100300 : TTCTTC-TTCTTCACA--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AG--G-TTTTCTCTCTCTCTCGG-TTGAAC-GAGATA-TATA-T---TT-T-T-CTC-A--CCTT--A-G--A-G-TG-AT-AA-TT-GTGTTTTAGCAAGA
gi|100301 : TTCTTC-TTTTTCACATACAA---AGTACAA-T-GT------------GCA-AA-TAT--------CATTC-AG-TG-TTTT--------CTCGG-TTAA---GGG--A-TATT-T---TTGT-T-CTC-G--CTAG--A-G--A-G-GA-AT-AA-TCAGC-TTTTAGTGAGA
gi|100302 : TTCTTC-TTTTTCATG--CAA---AGTAC-AAT-AT------------ATA-AA-T-T--------C-CTCAAG-TGTTTTT-------TCTCAG-TTGAACAGGG--A-TA-A-T---TT-T-T-CTC-AGTCTTG--G-C--A-G-GG-AT-AATTC-ACGTT
gi|100303 : TTTTTT-TGTTTCACG--CGA---ATTATAAAT-AG------------ATA-AA-A-T--------T-CTC-GAATG-TTAT-------TCTCGG-TTGAAC-GGT--A-AATA-T---TT-AAT-CTT-G--CTAA--A-G--A-G-GG-AT-AA-TA-GCATTTTAGTAAGA
gi|100304 : TTGTTC-TTTTTCAAG--TGT---AGTATAAAT-AT------------ATA-AG-C-T--------C-ATA-TG-TG-TTTT-------CCTCGG-GTGAAC-GGG--T-TATA-T---TT-T-T-TAC-G--TTAG--T-G--A-G-TG-AT-AA-TT-G
gi|100305 : TCTTC-TTTTTTACG--CTA---AGGACAAAT-AT------------GTC-AA-T-T--------T-CTC-AG-TG-TTTT-------TCTCGA-TTGAAC-GGG--G-TATA-T---TT-T-T-CTT-G--CTAGTTA-T--A-G-GG-AT-
gi|100306 : CTTC-TTTTTCACG--CAA---AGTA-AAAT-A-------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TGTA-T---TT-T-T-CTCGG--CTAG--A-G--A-G-GG-AT-AA-TC-ACCTTTTAGCGAG
gi|100307 : CTTC-TTTT-CACT--CGA---AATACAATTTAT------------GTA-TA-T-TGTTTTGATT-CTC-GG-TG-TTTT-------TCTCGACTTGAGC-AGG--ACTATA-T---TT-T-TGCTC-A--TTAG--ACG--AGG-GG-ATAAA-TT-GCGTTTTAGCGAG
gi|100308 : CTTC-TTTTTCATG--TGA---AATACAAAT-AC-------------------------------------------TTT-------TCTCCT-TTGTAC-AAG--A-TATA-T---TA-T-T-CTC-G--CTA---A-G--A-G-GG-AT-
gi|100309 : C-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TATG-T---TT-T-T-CTG-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100310 : C-TTTTTCACG--CAATAAAGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GA-CG-TTTA-------TCTCGT-ATAACC-GGG--A-TATA-T---TT-T-T--TC-G--CTAG--G-C--A-G-GG-AT-AA-TC-GCATTTTAGCAAGA
gi|100311 : C-TTTTTCACT--TGA---AGTACAACCCAT------------ATA-AA-T-T--------C-CTT-AG-TG-TTTT-------TCTCAG-TTGAAC-GAG--A-TAAA-T---TT-T-T-CTC-A--CTAG--A-G--A-G-GA-AT-AA-TC-ATGTTTTAGCGAGA
gi|100312 : C-TTTTTCACG--CGA---AGTACAAAT-AT------------ATATAATT-T--------C-CTT-GG-TA---TT-------TCTCAG-TTGAAC-GGG--A-AATA-T---TT-T-T-ATC-
gi|100313 : TTTTCACG--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-ATGAAC-GGG--A-TAT--T---TT-T-T-CTC----CTAG--A-GGAA-GTAG-AT-GA----ACGTTCTA
gi|100314 : A-AA-C-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAT-GGA--A-TATA-TATGTA-C-T-CTT-G--CTAA--A-G--A-G-GG-AT-AA-TT-GTGTTTTAGTGAGA
gi|100315 : C-AGG--A-TAT-------T-T-T-CTC-G--CTAG--A-G--A-G-GA-AT-AA-TC-ACGTTTTATCAAAA
gi|100316 : ATA-T---TC-T-AACTA-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCAAGA
gi|100317 : A-T---TTAT-T-CTG-G--CTAA--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCAAGA
gi|100318 : -T---TG-T-T-TTC-A--CTAG--A-G--A-G-GG-AT-AA-TT-GCGTTTTAGTGAGA
gi|100319 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100320 : ---TT-T-T-CTT-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100321 : ---TC-T-T-CTC-G--CTAT--A-G--A-G-GA-AT-AA-TC-GCATTTTAGTGAGA
gi|100322 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-ACCTTTTAGCGAGA
gi|100323 : ---TT-T-T-CTC-G--TTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100324 : ---TT-T-T-CTC-G--CTAC--A-G--A-G-GGGAT-AA-TC-GCCTTTTAGCGA
gi|100325 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-TTGTTTTAGCGAAA
gi|100326 : T-T-T-CTT-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTCAGCGAGA
Alignments
lowQualScore : 2 22 333 3 999999999999 1 1 1 66666666 1 1 1 1 5555555 22 1 22 1 1 222 2 2 2 1 11 11 1 11 1 1 1 1 1 1 1
lowQualScore : . .. ... . ............ . . . ........ . . . . ....... .. . .. . . ... . . . . .. .. . .. . . . . . . .
lowQualScore : 0 66 333 8 888888888888 8 8 8 66666666 8 8 8 8 9999999 11 7 44 7 5 111 4 4 4 2 77 77 2 77 2 2 2 2 3 3 8
consensus : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
Reference ( family-578 ) : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100293 : TTCTTC-TTTCTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AG-TG-TTTT-------TCTCGA-TTGAAC-AGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100294 : TTCTTC-TTTTTCACG--CCA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GA-TG-TTTT-------TCTCGA-TTAAAC-GGG--A-TGTA-T---TT-T-G-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-ACGTTTTAGAGAGA
gi|100295 : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AT-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TA-A-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100296 : TTCTTC-TTTTTAACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-A--CTAG--A-G--A-G-AG-AT-AA-TC-G-GTT
gi|100297 : TTTTTCATTTTTCCCA--C-A---CGTACAAAT-AT------------GTA-AA-C-T--------C-TTT-AA-TG-TTTT-------TCTCAG-TTGAAC-GGG--A-TATA-C---TT-T-T-CTC-G--TTAG--A-G--A-G-GG-AT-AA-TC-GCATTTTAGCGAGA
gi|100298 : TTTTCC-TTTTTCACG--CGA---AGTAAAAAT-ATAGGCCTATATATGAA-AA-T-T--------C-CTC-AG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATATT---TT-T-T-CTC-G--CTAT--A-C--A-G-GG-AT-AA-TC-GCGCCTTAGCGAGA
gi|100299 : TTCTTC-TTTTTCATG--CGA---AGTACAAAT-CA------------GTA-AA-A-T--------C--TC-CG-TG-TTTT-------CC--GA-TTGAAC-GGG--A-TATA-T---TT-TTT-CTC-G--CTAG--A-G--A-G-CG-AT-AA-TC-GCATTTTAGCGAGA
gi|100300 : TTCTTC-TTCTTCACA--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AG--G-TTTTCTCTCTCTCTCGG-TTGAAC-GAGATA-TATA-T---TT-T-T-CTC-A--CCTT--A-G--A-G-TG-AT-AA-TT-GTGTTTTAGCAAGA
gi|100301 : TTCTTC-TTTTTCACATACAA---AGTACAA-T-GT------------GCA-AA-TAT--------CATTC-AG-TG-TTTT--------CTCGG-TTAA---GGG--A-TATT-T---TTGT-T-CTC-G--CTAG--A-G--A-G-GA-AT-AA-TCAGC-TTTTAGTGAGA
gi|100302 : TTCTTC-TTTTTCATG--CAA---AGTAC-AAT-AT------------ATA-AA-T-T--------C-CTCAAG-TGTTTTT-------TCTCAG-TTGAACAGGG--A-TA-A-T---TT-T-T-CTC-AGTCTTG--G-C--A-G-GG-AT-AATTC-ACGTT
gi|100303 : TTTTTT-TGTTTCACG--CGA---ATTATAAAT-AG------------ATA-AA-A-T--------T-CTC-GAATG-TTAT-------TCTCGG-TTGAAC-GGT--A-AATA-T---TT-AAT-CTT-G--CTAA--A-G--A-G-GG-AT-AA-TA-GCATTTTAGTAAGA
gi|100304 : TTGTTC-TTTTTCAAG--TGT---AGTATAAAT-AT------------ATA-AG-C-T--------C-ATA-TG-TG-TTTT-------CCTCGG-GTGAAC-GGG--T-TATA-T---TT-T-T-TAC-G--TTAG--T-G--A-G-TG-AT-AA-TT-G
gi|100305 : TCTTC-TTTTTTACG--CTA---AGGACAAAT-AT------------GTC-AA-T-T--------T-CTC-AG-TG-TTTT-------TCTCGA-TTGAAC-GGG--G-TATA-T---TT-T-T-CTT-G--CTAGTTA-T--A-G-GG-AT-
gi|100306 : CTTC-TTTTTCACG--CAA---AGTA-AAAT-A-------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TGTA-T---TT-T-T-CTCGG--CTAG--A-G--A-G-GG-AT-AA-TC-ACCTTTTAGCGAG
gi|100307 : CTTC-TTTT-CACT--CGA---AATACAATTTAT------------GTA-TA-T-TGTTTTGATT-CTC-GG-TG-TTTT-------TCTCGACTTGAGC-AGG--ACTATA-T---TT-T-TGCTC-A--TTAG--ACG--AGG-GG-ATAAA-TT-GCGTTTTAGCGAG
gi|100308 : CTTC-TTTTTCATG--TGA---AATACAAAT-AC-------------------------------------------TTT-------TCTCCT-TTGTAC-AAG--A-TATA-T---TA-T-T-CTC-G--CTA---A-G--A-G-GG-AT-
gi|100309 : C-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TATG-T---TT-T-T-CTG-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100310 : C-TTTTTCACG--CAATAAAGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GA-CG-TTTA-------TCTCGT-ATAACC-GGG--A-TATA-T---TT-T-T--TC-G--CTAG--G-C--A-G-GG-AT-AA-TC-GCATTTTAGCAAGA
gi|100311 : C-TTTTTCACT--TGA---AGTACAACCCAT------------ATA-AA-T-T--------C-CTT-AG-TG-TTTT-------TCTCAG-TTGAAC-GAG--A-TAAA-T---TT-T-T-CTC-A--CTAG--A-G--A-G-GA-AT-AA-TC-ATGTTTTAGCGAGA
gi|100312 : C-TTTTTCACG--CGA---AGTACAAAT-AT------------ATATAATT-T--------C-CTT-GG-TA---TT-------TCTCAG-TTGAAC-GGG--A-AATA-T---TT-T-T-ATC-
gi|100313 : TTTTCACG--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-ATGAAC-GGG--A-TAT--T---TT-T-T-CTC----CTAG--A-GGAA-GTAG-AT-GA----ACGTTCTA
gi|100314 : A-AA-C-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAT-GGA--A-TATA-TATGTA-C-T-CTT-G--CTAA--A-G--A-G-GG-AT-AA-TT-GTGTTTTAGTGAGA
gi|100315 : C-AGG--A-TAT-------T-T-T-CTC-G--CTAG--A-G--A-G-GA-AT-AA-TC-ACGTTTTATCAAAA
gi|100316 : ATA-T---TC-T-AACTA-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCAAGA
gi|100317 : A-T---TTAT-T-CTG-G--CTAA--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCAAGA
gi|100318 : -T---TG-T-T-TTC-A--CTAG--A-G--A-G-GG-AT-AA-TT-GCGTTTTAGTGAGA
gi|100319 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100320 : ---TT-T-T-CTT-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100321 : ---TC-T-T-CTC-G--CTAT--A-G--A-G-GA-AT-AA-TC-GCATTTTAGTGAGA
gi|100322 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-ACCTTTTAGCGAGA
gi|100323 : ---TT-T-T-CTC-G--TTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100324 : ---TT-T-T-CTC-G--CTAC--A-G--A-G-GGGAT-AA-TC-GCCTTTTAGCGA
gi|100325 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-TTGTTTTAGCGAAA
gi|100326 : T-T-T-CTT-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTCAGCGAGA
blockSeqs : A TA TAA T AGGCCTATATAT T T A GTTTTGAT A A A T CTCTCTC AC A AT C T ATG G T G G GT TT C GA G T G A T A G
blockSeqs : . . . C . . . . . . . . . . A . . . . . A A A . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
finalCons : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
Alignments
lowQualScore : 2 22 333 3 999999999999 1 1 1 66666666 1 1 1 1 5555555 22 1 22 1 1 222 2 2 2 1 11 11 1 11 1 1 1 1 1 1 1
lowQualScore : . .. ... . ............ . . . ........ . . . . ....... .. . .. . . ... . . . . .. .. . .. . . . . . . .
lowQualScore : 0 66 333 8 888888888888 8 8 8 66666666 8 8 8 8 9999999 11 7 44 7 5 111 4 4 4 2 77 77 2 77 2 2 2 2 3 3 8
consensus : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
Reference ( family-578 ) : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100293 : TTCTTC-TTTCTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AG-TG-TTTT-------TCTCGA-TTGAAC-AGG--A-TATA-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100294 : TTCTTC-TTTTTCACG--CCA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GA-TG-TTTT-------TCTCGA-TTAAAC-GGG--A-TGTA-T---TT-T-G-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-ACGTTTTAGAGAGA
gi|100295 : TTCTTC-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AT-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TA-A-T---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100296 : TTCTTC-TTTTTAACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TATA-T---TT-T-T-CTC-A--CTAG--A-G--A-G-AG-AT-AA-TC-G-GTT
gi|100297 : TTTTTCATTTTTCCCA--C-A---CGTACAAAT-AT------------GTA-AA-C-T--------C-TTT-AA-TG-TTTT-------TCTCAG-TTGAAC-GGG--A-TATA-C---TT-T-T-CTC-G--TTAG--A-G--A-G-GG-AT-AA-TC-GCATTTTAGCGAGA
gi|100298 : TTTTCC-TTTTTCACG--CGA---AGTAAAAAT-ATAGGCCTATATATGAA-AA-T-T--------C-CTC-AG-TG-TTTT-------TCTCGG-TTGAAC-GGG--A-TATATT---TT-T-T-CTC-G--CTAT--A-C--A-G-GG-AT-AA-TC-GCGCCTTAGCGAGA
gi|100299 : TTCTTC-TTTTTCATG--CGA---AGTACAAAT-CA------------GTA-AA-A-T--------C--TC-CG-TG-TTTT-------CC--GA-TTGAAC-GGG--A-TATA-T---TT-TTT-CTC-G--CTAG--A-G--A-G-CG-AT-AA-TC-GCATTTTAGCGAGA
gi|100300 : TTCTTC-TTCTTCACA--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-AG--G-TTTTCTCTCTCTCTCGG-TTGAAC-GAGATA-TATA-T---TT-T-T-CTC-A--CCTT--A-G--A-G-TG-AT-AA-TT-GTGTTTTAGCAAGA
gi|100301 : TTCTTC-TTTTTCACATACAA---AGTACAA-T-GT------------GCA-AA-TAT--------CATTC-AG-TG-TTTT--------CTCGG-TTAA---GGG--A-TATT-T---TTGT-T-CTC-G--CTAG--A-G--A-G-GA-AT-AA-TCAGC-TTTTAGTGAGA
gi|100302 : TTCTTC-TTTTTCATG--CAA---AGTAC-AAT-AT------------ATA-AA-T-T--------C-CTCAAG-TGTTTTT-------TCTCAG-TTGAACAGGG--A-TA-A-T---TT-T-T-CTC-AGTCTTG--G-C--A-G-GG-AT-AATTC-ACGTT
gi|100303 : TTTTTT-TGTTTCACG--CGA---ATTATAAAT-AG------------ATA-AA-A-T--------T-CTC-GAATG-TTAT-------TCTCGG-TTGAAC-GGT--A-AATA-T---TT-AAT-CTT-G--CTAA--A-G--A-G-GG-AT-AA-TA-GCATTTTAGTAAGA
gi|100304 : TTGTTC-TTTTTCAAG--TGT---AGTATAAAT-AT------------ATA-AG-C-T--------C-ATA-TG-TG-TTTT-------CCTCGG-GTGAAC-GGG--T-TATA-T---TT-T-T-TAC-G--TTAG--T-G--A-G-TG-AT-AA-TT-G
gi|100305 : TCTTC-TTTTTTACG--CTA---AGGACAAAT-AT------------GTC-AA-T-T--------T-CTC-AG-TG-TTTT-------TCTCGA-TTGAAC-GGG--G-TATA-T---TT-T-T-CTT-G--CTAGTTA-T--A-G-GG-AT-
gi|100306 : CTTC-TTTTTCACG--CAA---AGTA-AAAT-A-------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TGTA-T---TT-T-T-CTCGG--CTAG--A-G--A-G-GG-AT-AA-TC-ACCTTTTAGCGAG
gi|100307 : CTTC-TTTT-CACT--CGA---AATACAATTTAT------------GTA-TA-T-TGTTTTGATT-CTC-GG-TG-TTTT-------TCTCGACTTGAGC-AGG--ACTATA-T---TT-T-TGCTC-A--TTAG--ACG--AGG-GG-ATAAA-TT-GCGTTTTAGCGAG
gi|100308 : CTTC-TTTTTCATG--TGA---AATACAAAT-AC-------------------------------------------TTT-------TCTCCT-TTGTAC-AAG--A-TATA-T---TA-T-T-CTC-G--CTA---A-G--A-G-GG-AT-
gi|100309 : C-TTTTTCACG--CGA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GG-TG-TTTT-------TCTCGA-TTGAAC-GGG--A-TATG-T---TT-T-T-CTG-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100310 : C-TTTTTCACG--CAATAAAGTACAAAT-AT------------GTA-AA-T-T--------C-CTT-GA-CG-TTTA-------TCTCGT-ATAACC-GGG--A-TATA-T---TT-T-T--TC-G--CTAG--G-C--A-G-GG-AT-AA-TC-GCATTTTAGCAAGA
gi|100311 : C-TTTTTCACT--TGA---AGTACAACCCAT------------ATA-AA-T-T--------C-CTT-AG-TG-TTTT-------TCTCAG-TTGAAC-GAG--A-TAAA-T---TT-T-T-CTC-A--CTAG--A-G--A-G-GA-AT-AA-TC-ATGTTTTAGCGAGA
gi|100312 : C-TTTTTCACG--CGA---AGTACAAAT-AT------------ATATAATT-T--------C-CTT-GG-TA---TT-------TCTCAG-TTGAAC-GGG--A-AATA-T---TT-T-T-ATC-
gi|100313 : TTTTCACG--CAA---AGTACAAAT-AT------------GTA-AA-T-T--------C-CTC-GG-TG-TTTT-------TCTCGA-ATGAAC-GGG--A-TAT--T---TT-T-T-CTC----CTAG--A-GGAA-GTAG-AT-GA----ACGTTCTA
gi|100314 : A-AA-C-T--------C-CTC-GG-TG-TTTT-------TCTCGA-TTGAAT-GGA--A-TATA-TATGTA-C-T-CTT-G--CTAA--A-G--A-G-GG-AT-AA-TT-GTGTTTTAGTGAGA
gi|100315 : C-AGG--A-TAT-------T-T-T-CTC-G--CTAG--A-G--A-G-GA-AT-AA-TC-ACGTTTTATCAAAA
gi|100316 : ATA-T---TC-T-AACTA-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCAAGA
gi|100317 : A-T---TTAT-T-CTG-G--CTAA--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCAAGA
gi|100318 : -T---TG-T-T-TTC-A--CTAG--A-G--A-G-GG-AT-AA-TT-GCGTTTTAGTGAGA
gi|100319 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCGTTTTAGCGAGA
gi|100320 : ---TT-T-T-CTT-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100321 : ---TC-T-T-CTC-G--CTAT--A-G--A-G-GA-AT-AA-TC-GCATTTTAGTGAGA
gi|100322 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-ACCTTTTAGCGAGA
gi|100323 : ---TT-T-T-CTC-G--TTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTTAGCGAGA
gi|100324 : ---TT-T-T-CTC-G--CTAC--A-G--A-G-GGGAT-AA-TC-GCCTTTTAGCGA
gi|100325 : ---TT-T-T-CTC-G--CTAG--A-G--A-G-GG-AT-AA-TC-TTGTTTTAGCGAAA
gi|100326 : T-T-T-CTT-G--CTAG--A-G--A-G-GG-AT-AA-TC-GCCTTTCAGCGAGA