lowQualScore : 5 4 1 1 2 2 1 1 1 1 44 3 11 3 222 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 3 22 2 1 2222 5555555 3 3 1
lowQualScore : . . . . . . . . . . .. . .. . ... . . . . . . . . . . . . . . . . .. . . .... ....... . . .
lowQualScore : 0 0 3 3 6 5 2 2 2 2 00 5 66 5 111 4 4 2 2 2 2 2 2 2 2 2 4 4 4 2 5 55 5 2 7777 3333333 8 8 3
consensus : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
Reference ( gi|124193 ) : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124195 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TG-TT-CG-G----T-------GGTTT-AAATA-CAAA
gi|124203 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-GA--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-CAAAa
gi|124194 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-GAT-C-CA-C-C-A-G-G-AG-A-G-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAAa
gi|124191 : ACGA-AA-AC-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-A-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAAa
gi|124196 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--ACT---T-G-TTC-CA-C-C-AAG-C-AG-A-G-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124200 : ACGA-CA-AG-T---TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-CAAG-A-G-AT-A-CATTA-TT-CG-G----T-------GG-TT--AATA-TAAAat
gi|124199 : ACGA-CA-CG-T-A-TC-C-T-CGGG-G-CCC-A-A--A-T---T-G-T-C-CAAC-C-A-G-C-AG-A-G-AT-A-CA-TA-TTTCG-G----T-------GG-TT-AAATA-TAAA
gi|124192 : ACGA-AA-AC-T-A-TC-C-T-CGGG---AC--A-A--A-T---T-AAT-C-CA-C---A-G-C-AG-A-G-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124205 : ACGA-CACAG-T-A-TC---T-CGGG-G-AC--A-A--A-T---T-G-T-C-C--C-A-A-G-C-AG-A-G-AT-A-CA-TA-TT-CG-G------------GG-TT-AAAT--TAAA
gi|124212 : ACG--CA-AG-T-A-TC-C-T-CGGGCG-AC--A-A--A-T---TTG-T-C-CA-C-C-A-G-C-AGCA-GAAT-A-C--TA-TT-CG-G----T-------GG-TTAAAATA-TAAAat
gi|124210 : cgaACGA-CA-AG-T-A-TC-C-T-CGGG-GAAC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C------G-ATAA-CA-TT-GT-CG-G----T-------GG-TT--AATA-CAA
gi|124206 : ACGA-CA-AGGT-A-TC-C-TTCGGG-G-AC--A-A--A-T---T-G-T-C-CA---C-A-A-C-AA-A-G--C-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-
gi|124201 : ACGAGCACAG-T-AATC-C-T-CGGG-G-AC--A-A--AAT---T-G-T-C--A-CTC-A-G-C-AG-A-G-ATTA-CA-TA-TT-CG-G----T-------GG-TT-AAATATTAAA
gi|124207 : ACGA-AA-AA---G-TC-C-T--GGG-G-AC--A-A--A-T---T-G-T-C-CA-C-CGA-G-C-AA-A-G-AT-A-CA-TA-T---G-G----T-------GA-TT-AAATA-TAAAaat
gi|124202 : ACGATCACAG-T-A-TC-C-T-CGGG-G-AA--A-A--A-T---TGG-T-C-CA---C-A-C-C-AG-A-G-AT-A-CA-TA-TT-CG-G------------GT-TT-AACTA-TAAA
gi|124209 : ACGAACA-AG-T-A-TC-C-T-CTCG-G-ACA-A-A--A-T---T-G-T-C-CA---C-A-G-C-AG-A-G-AT-A-CA-T
gi|124211 : CGA-CA-AG-TTA-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A---C-AG-A---AT-A-CA-TA-TT-CG-G----T-------GGTTT-AAATA-TAAA
gi|124213 : CGA-CA-AG-T-A-TC-C-T-CGGA-G-AC--A-T--A-G---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TG-CT-CG-A----T-------GG-CT-AAATat
gi|124214 : CGA-CA-AG-T-A-TC-T-T-CGGG-G-AC--ACA--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-T
gi|124215 : CGA-CA-AG-T-A-AC-C-T-CGGG-G-AC--ACA--A-G---T-G-C-T-CA-C-C-A-G-C-AG-ACA-AT-A-CACTG-CT-CG-A----T-------GGCTT-AAATG-TAAA
gi|124216 : CGA-CA-AG-T-A-TC-C-T-C-GG-G-AC--ATA--G-G---T-G-T---CA-C-C-A-G-C-AG-A-GAAT-A-CATTG-CT-CG-A----TG------GG-TT-AAATG-TAAA
gi|124198 : GA-CA-AG-T-A-TCGC-T-CGGG---AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-ATCA-TATTT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124217 : acgaaGA-CA-AG-T-A-CC-C-T-CGGG-G-AC--A-G--AGTGCAT-G-T-C-C--C-C-A-G-C-GG-C-G-AT-G-CA-TG-TT-TG-A----T-------GG-TT-AAGTA-at
gi|124208 : A-CA-AG-T-A-TC-C-T-CGGG-G-A---A-A--A-T---T-G-T-CAAA-C-C-A-G-C-AG-A-G-AT-A-CA-TG-TT-CG-G----G-------GG-TTCAAATA-
gi|124219 : acgaacA-AG-C-A-TC-C-T-CGGA-G-AC--A-A--A-T---T-G-T-C-CA-C-C-T-G-C-AG-A-G-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AACTA-acaaaa
gi|124197 : A-AG-T-A-TC-CCT-CGGG-G-AC--A-A--A-T-----G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TA-TTCCG-G----T-------GG-TTAAAATA-TAAA
gi|124221 : acgaacaA-AG-T-A-TC-C-T-CGTC-G-AC--A-A--A-T---T-G-T-C-TA-C-C-A-G-C-AG-A-G-AT-A-CA-TG-TT-TG-G----T-------GG-TT-TGATA-CAAAat
gi|124222 : A-AG-T-AATCAC-T-CGGG-G-AC----A--A-T---T-G-T-C-CA-C-C-A-GCC-AG-A-G-AT-A-CA-TG-TT-CGAG----T-------GG-TT-AAATA-CAAA
gi|124204 : A-AG-T---TC-C---CAGG-A-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-AAG-AT-A-CA-TA-TT-CG-G----A-------GG-TT-AAATA-TAAAa
gi|124220 : acgaaagA-AG-T-A-TC-C-T-CGGG-G-AT--A-A--A-T---T-G-T-C-CC-C-C-A-G-C-AG-A-G-AT-A-CA-TA-TT-CG-GGACATATCGGTGGG-TT-AGATA-TAAAat
gi|124218 : -TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-A-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124223 : aaattc-C-T-GGGG-G-ACCAA-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-AT-A-CA-TG-TC----G----T-------GG-TT-AAATA-CAAAat
gi|124224 : -G-AC--A-AGTA-T---C-A-T-C-CA-C-C-A-G-C-AT-A-G-AT-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAa
gi|124225 : --A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AT-A-G-AT-A-CA-TA-TT-CG-T----T-------AA-TT-AAATA-TAAAtat
Alignments
lowQualScore : 4 3 1 1 2 2 1 1 1 1 33 4 11 2 222 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2222 5555555 3 3 1
lowQualScore : . . . . . . . . . . .. . .. . ... . . . . . . . . . . . . . . . . . . . . .... ....... . . .
lowQualScore : 8 9 3 3 5 4 2 2 2 2 99 6 66 3 000 3 3 1 1 1 1 1 1 1 1 1 3 1 1 3 1 4 4 2 2 6666 2222222 6 6 2
consensus : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
Reference ( family-576 ) : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124191 : ACGA-AA-AC-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-A-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124192 : ACGA-AA-AC-T-A-TC-C-T-CGGG---AC--A-A--A-T---T-AAT-C-CA-C---A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124193 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124194 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-GAT-C-CA-C-C-A-G-G-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124195 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GGTTT-AAATA-CAAAa
gi|124196 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--ACT---T-G-TTC-CA-C-C-AAG-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAAa
gi|124197 : A-AG-T-A-TC-CCT-CGGG-G-AC--A-A--A-T-----G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TTCCG-G----T-------GG-TTAAAATA-TAAAat
gi|124198 : acgaacaGA-CA-AG-T-A-TCGC-T-CGGG---AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-ATCA-TATTT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124199 : acgaaACGA-CA-CG-T-A-TC-C-T-CGGG-G-CCC-A-A--A-T---T-G-T-C-CAAC-C-A-G-C-AG-A-G-A-T-A-CA-TATTT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124200 : ACGA-CA-AG-T---TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-CAAG-A-G-A-T-A-CATTA-TT-CG-G----T-------GG-TT--AATA-TAAAat
gi|124201 : ACGAGCACAG-T-AATC-C-T-CGGG-G-AC--A-A--AAT---T-G-T-C--A-CTC-A-G-C-AG-A-G-A-TTA-CA-TA-TT-CG-G----T-------GG-TT-AAATATTAAA
gi|124202 : ACGATCACAG-T-A-TC-C-T-CGGG-G-AA--A-A--A-T---TGG-T-C-CA---C-A-C-C-AG-A-G-A-T-A-CA-TA-TT-CG-G------------GT-TT-AACTA-TAAAaat
gi|124203 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-GA--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-CAAA
gi|124204 : A-AG-T---TC-C---CAGG-A-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-AAG-A-T-A-CA-TA-TT-CG-G----A-------GG-TT-AAATA-TAAAa
gi|124205 : acgaaagACGA-CACAG-T-A-TC---T-CGGG-G-AC--A-A--A-T---T-G-T-C-C--C-A-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G------------GG-TT-AAAT--TAAAat
gi|124206 : ACGA-CA-AGGT-A-TC-C-TTCGGG-G-AC--A-A--A-T---T-G-T-C-CA-C---A-A-C-AA-A-G---C-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-at
gi|124207 : ACGA-AA-AA---G-TC-C-T--GGG-G-AC--A-A--A-T---T-G-T-C-CA-C-CGA-G-C-AA-A-G-A-T-A-CA-TA-T---G-G----T-------GA-TT-AAATA-TAAA
gi|124208 : A-CA-AG-T-A-TC-C-T-CGGG-G-A---A-A--A-T---T-G-T-CAAA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----G-------GG-TTCAAATA-
gi|124209 : acgaacACGAACA-AG-T-A-TC-C-T-CTCG-G-ACA-A-A--A-T---T-G-T-C-CA---C-A-G-C-AG-A-G-A-T-A-CA-Tacaaaa
gi|124210 : ACGA-CA-AG-T-A-TC-C-T-CGGG-GAAC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C------G-A-TAA-CA-TT-GT-CG-G----T-------GG-TT--AATA-CAA
gi|124211 : CGA-CA-AG-TTA-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A---C-AG-A---A-T-A-CA-TA-TT-CG-G----T-------GGTTT-AAATA-TAAA
gi|124212 : ACG--CA-AG-T-A-TC-C-T-CGGGCG-AC--A-A--A-T---TTG-T-C-CA-C-C-A-G-C-AGCA-G-AAT-A-C--TA-TT-CG-G----T-------GG-TTAAAATA-TAAAat
gi|124213 : cgaCGA-CA-AG-T-A-TC-C-T-CGGA-G-AC--A-T--A-G---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-CT-CG-A----T-------GG-CT-AAAT
gi|124214 : CGA-CA-AG-T-A-TC-T-T-CGGG-G-AC--ACA--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-T
gi|124215 : CGA-CA-AG-T-A-AC-C-T-CGGG-G-AC--ACA--A-G---T-G-C-T-CA-C-C-A-G-C-AG-ACA-A-T-A-CACTG-CT-CG-A----T-------GGCTT-AAATG-TAAA
gi|124216 : CGA-CA-AG-T-A-TC-C-T-C-GG-G-AC--ATA--G-G---T-G-T---CA-C-C-A-G-C-AG-A-GAA-T-A-CATTG-CT-CG-A----TG------GG-TT-AAATG-TAAA
gi|124217 : GA-CA-AG-T-A-CC-C-T-CGGG-G-AC--AGA--G-TGCAT-G-T-C-C--C-C-A-G-C-GG-C-G-A-T-G-CA-TG-TT-TG-A----T-------GG-TT-AAGTA-
gi|124218 : -TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-A-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124219 : aaattcA-AG-C-A-TC-C-T-CGGA-G-AC--A-A--A-T---T-G-T-C-CA-C-C-T-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AACTA-at
gi|124220 : A-AG-T-A-TC-C-T-CGGG-G-AT--A-A--A-T---T-G-T-C-CC-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-GGACATATCGGTGGG-TT-AGATA-TAAA
gi|124221 : A-AG-T-A-TC-C-T-CGTC-G-AC--A-A--A-T---T-G-T-C-TA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-TG-G----T-------GG-TT-TGATA-CAAAat
gi|124222 : A-AG-T-AATCAC-T-CGGG-G-AC----A--A-T---T-G-T-C-CA-C-C-A-GCC-AG-A-G-A-T-A-CA-TG-TT-CGAG----T-------GG-TT-AAATA-CAAA
gi|124223 : -C-T-GGGG-G-ACCAA-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TC----G----T-------GG-TT-AAATA-CAAAa
gi|124224 : -G-AC--A-AGTA-T---C-A-T-C-CA-C-C-A-G-C-AT-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAa
gi|124225 : --A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AT-A-G-A-T-A-CA-TA-TT-CG-T----T-------AA-TT-AAATA-TAAAtat
Alignments
lowQualScore : 4 3 1 1 2 2 1 1 1 1 33 4 11 2 222 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2222 5555555 3 3 1
lowQualScore : . . . . . . . . . . .. . .. . ... . . . . . . . . . . . . . . . . . . . . .... ....... . . .
lowQualScore : 8 9 3 3 5 4 2 2 2 2 99 6 66 3 000 3 3 1 1 1 1 1 1 1 1 1 3 1 1 3 1 4 4 2 2 6666 2222222 6 6 2
consensus : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
Reference ( family-576 ) : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124191 : ACGA-AA-AC-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-A-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124192 : ACGA-AA-AC-T-A-TC-C-T-CGGG---AC--A-A--A-T---T-AAT-C-CA-C---A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124193 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124194 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-GAT-C-CA-C-C-A-G-G-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124195 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GGTTT-AAATA-CAAAa
gi|124196 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--ACT---T-G-TTC-CA-C-C-AAG-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAAa
gi|124197 : A-AG-T-A-TC-CCT-CGGG-G-AC--A-A--A-T-----G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TTCCG-G----T-------GG-TTAAAATA-TAAAat
gi|124198 : acgaacaGA-CA-AG-T-A-TCGC-T-CGGG---AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-ATCA-TATTT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124199 : acgaaACGA-CA-CG-T-A-TC-C-T-CGGG-G-CCC-A-A--A-T---T-G-T-C-CAAC-C-A-G-C-AG-A-G-A-T-A-CA-TATTT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124200 : ACGA-CA-AG-T---TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-CAAG-A-G-A-T-A-CATTA-TT-CG-G----T-------GG-TT--AATA-TAAAat
gi|124201 : ACGAGCACAG-T-AATC-C-T-CGGG-G-AC--A-A--AAT---T-G-T-C--A-CTC-A-G-C-AG-A-G-A-TTA-CA-TA-TT-CG-G----T-------GG-TT-AAATATTAAA
gi|124202 : ACGATCACAG-T-A-TC-C-T-CGGG-G-AA--A-A--A-T---TGG-T-C-CA---C-A-C-C-AG-A-G-A-T-A-CA-TA-TT-CG-G------------GT-TT-AACTA-TAAAaat
gi|124203 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-GA--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-CAAA
gi|124204 : A-AG-T---TC-C---CAGG-A-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-AAG-A-T-A-CA-TA-TT-CG-G----A-------GG-TT-AAATA-TAAAa
gi|124205 : acgaaagACGA-CACAG-T-A-TC---T-CGGG-G-AC--A-A--A-T---T-G-T-C-C--C-A-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G------------GG-TT-AAAT--TAAAat
gi|124206 : ACGA-CA-AGGT-A-TC-C-TTCGGG-G-AC--A-A--A-T---T-G-T-C-CA-C---A-A-C-AA-A-G---C-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-at
gi|124207 : ACGA-AA-AA---G-TC-C-T--GGG-G-AC--A-A--A-T---T-G-T-C-CA-C-CGA-G-C-AA-A-G-A-T-A-CA-TA-T---G-G----T-------GA-TT-AAATA-TAAA
gi|124208 : A-CA-AG-T-A-TC-C-T-CGGG-G-A---A-A--A-T---T-G-T-CAAA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----G-------GG-TTCAAATA-
gi|124209 : acgaacACGAACA-AG-T-A-TC-C-T-CTCG-G-ACA-A-A--A-T---T-G-T-C-CA---C-A-G-C-AG-A-G-A-T-A-CA-Tacaaaa
gi|124210 : ACGA-CA-AG-T-A-TC-C-T-CGGG-GAAC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C------G-A-TAA-CA-TT-GT-CG-G----T-------GG-TT--AATA-CAA
gi|124211 : CGA-CA-AG-TTA-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A---C-AG-A---A-T-A-CA-TA-TT-CG-G----T-------GGTTT-AAATA-TAAA
gi|124212 : ACG--CA-AG-T-A-TC-C-T-CGGGCG-AC--A-A--A-T---TTG-T-C-CA-C-C-A-G-C-AGCA-G-AAT-A-C--TA-TT-CG-G----T-------GG-TTAAAATA-TAAAat
gi|124213 : cgaCGA-CA-AG-T-A-TC-C-T-CGGA-G-AC--A-T--A-G---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-CT-CG-A----T-------GG-CT-AAAT
gi|124214 : CGA-CA-AG-T-A-TC-T-T-CGGG-G-AC--ACA--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-T
gi|124215 : CGA-CA-AG-T-A-AC-C-T-CGGG-G-AC--ACA--A-G---T-G-C-T-CA-C-C-A-G-C-AG-ACA-A-T-A-CACTG-CT-CG-A----T-------GGCTT-AAATG-TAAA
gi|124216 : CGA-CA-AG-T-A-TC-C-T-C-GG-G-AC--ATA--G-G---T-G-T---CA-C-C-A-G-C-AG-A-GAA-T-A-CATTG-CT-CG-A----TG------GG-TT-AAATG-TAAA
gi|124217 : GA-CA-AG-T-A-CC-C-T-CGGG-G-AC--AGA--G-TGCAT-G-T-C-C--C-C-A-G-C-GG-C-G-A-T-G-CA-TG-TT-TG-A----T-------GG-TT-AAGTA-
gi|124218 : -TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-A-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124219 : aaattcA-AG-C-A-TC-C-T-CGGA-G-AC--A-A--A-T---T-G-T-C-CA-C-C-T-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AACTA-at
gi|124220 : A-AG-T-A-TC-C-T-CGGG-G-AT--A-A--A-T---T-G-T-C-CC-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-GGACATATCGGTGGG-TT-AGATA-TAAA
gi|124221 : A-AG-T-A-TC-C-T-CGTC-G-AC--A-A--A-T---T-G-T-C-TA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-TG-G----T-------GG-TT-TGATA-CAAAat
gi|124222 : A-AG-T-AATCAC-T-CGGG-G-AC----A--A-T---T-G-T-C-CA-C-C-A-GCC-AG-A-G-A-T-A-CA-TG-TT-CGAG----T-------GG-TT-AAATA-CAAA
gi|124223 : -C-T-GGGG-G-ACCAA-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TC----G----T-------GG-TT-AAATA-CAAAa
gi|124224 : -G-AC--A-AGTA-T---C-A-T-C-CA-C-C-A-G-C-AT-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAa
gi|124225 : --A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AT-A-G-A-T-A-CA-TA-TT-CG-T----T-------AA-TT-AAATA-TAAAtat
blockSeqs : G C G T A G C T C A CA C GT C GCA G A T A A T G A C A C A A A T T T T C A GACA ATCGGTG T A T
blockSeqs : T C . . A A . . . . C C . A . T A . . . . . . . . . C . . A . C T . . . G T C .
blockSeqs : A C . . . . . . . . A T . . . . . . . . . . . . . . . . . . . T . . . . . C A .
blockSeqs : . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
finalCons : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
Alignments
lowQualScore : 4 3 1 1 2 2 1 1 1 1 33 4 11 2 222 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2222 5555555 3 3 1
lowQualScore : . . . . . . . . . . .. . .. . ... . . . . . . . . . . . . . . . . . . . . .... ....... . . .
lowQualScore : 8 9 3 3 5 4 2 2 2 2 99 6 66 3 000 3 3 1 1 1 1 1 1 1 1 1 3 1 1 3 1 4 4 2 2 6666 2222222 6 6 2
consensus : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
Reference ( family-576 ) : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124191 : ACGA-AA-AC-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-A-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124192 : ACGA-AA-AC-T-A-TC-C-T-CGGG---AC--A-A--A-T---T-AAT-C-CA-C---A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124193 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124194 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-GAT-C-CA-C-C-A-G-G-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124195 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GGTTT-AAATA-CAAAa
gi|124196 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-AC--A-A--ACT---T-G-TTC-CA-C-C-AAG-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAAa
gi|124197 : A-AG-T-A-TC-CCT-CGGG-G-AC--A-A--A-T-----G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TTCCG-G----T-------GG-TTAAAATA-TAAAat
gi|124198 : acgaacaGA-CA-AG-T-A-TCGC-T-CGGG---AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-ATCA-TATTT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124199 : acgaaACGA-CA-CG-T-A-TC-C-T-CGGG-G-CCC-A-A--A-T---T-G-T-C-CAAC-C-A-G-C-AG-A-G-A-T-A-CA-TATTT-CG-G----T-------GG-TT-AAATA-TAAAat
gi|124200 : ACGA-CA-AG-T---TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-CAAG-A-G-A-T-A-CATTA-TT-CG-G----T-------GG-TT--AATA-TAAAat
gi|124201 : ACGAGCACAG-T-AATC-C-T-CGGG-G-AC--A-A--AAT---T-G-T-C--A-CTC-A-G-C-AG-A-G-A-TTA-CA-TA-TT-CG-G----T-------GG-TT-AAATATTAAA
gi|124202 : ACGATCACAG-T-A-TC-C-T-CGGG-G-AA--A-A--A-T---TGG-T-C-CA---C-A-C-C-AG-A-G-A-T-A-CA-TA-TT-CG-G------------GT-TT-AACTA-TAAAaat
gi|124203 : ACGA-CA-AG-T-A-TC-C-T-CGGG-G-GA--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----T-------GG-TT-AAATA-CAAA
gi|124204 : A-AG-T---TC-C---CAGG-A-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-AAG-A-T-A-CA-TA-TT-CG-G----A-------GG-TT-AAATA-TAAAa
gi|124205 : acgaaagACGA-CACAG-T-A-TC---T-CGGG-G-AC--A-A--A-T---T-G-T-C-C--C-A-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G------------GG-TT-AAAT--TAAAat
gi|124206 : ACGA-CA-AGGT-A-TC-C-TTCGGG-G-AC--A-A--A-T---T-G-T-C-CA-C---A-A-C-AA-A-G---C-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-at
gi|124207 : ACGA-AA-AA---G-TC-C-T--GGG-G-AC--A-A--A-T---T-G-T-C-CA-C-CGA-G-C-AA-A-G-A-T-A-CA-TA-T---G-G----T-------GA-TT-AAATA-TAAA
gi|124208 : A-CA-AG-T-A-TC-C-T-CGGG-G-A---A-A--A-T---T-G-T-CAAA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-CG-G----G-------GG-TTCAAATA-
gi|124209 : acgaacACGAACA-AG-T-A-TC-C-T-CTCG-G-ACA-A-A--A-T---T-G-T-C-CA---C-A-G-C-AG-A-G-A-T-A-CA-Tacaaaa
gi|124210 : ACGA-CA-AG-T-A-TC-C-T-CGGG-GAAC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C------G-A-TAA-CA-TT-GT-CG-G----T-------GG-TT--AATA-CAA
gi|124211 : CGA-CA-AG-TTA-TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A---C-AG-A---A-T-A-CA-TA-TT-CG-G----T-------GGTTT-AAATA-TAAA
gi|124212 : ACG--CA-AG-T-A-TC-C-T-CGGGCG-AC--A-A--A-T---TTG-T-C-CA-C-C-A-G-C-AGCA-G-AAT-A-C--TA-TT-CG-G----T-------GG-TTAAAATA-TAAAat
gi|124213 : cgaCGA-CA-AG-T-A-TC-C-T-CGGA-G-AC--A-T--A-G---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-CT-CG-A----T-------GG-CT-AAAT
gi|124214 : CGA-CA-AG-T-A-TC-T-T-CGGG-G-AC--ACA--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-T
gi|124215 : CGA-CA-AG-T-A-AC-C-T-CGGG-G-AC--ACA--A-G---T-G-C-T-CA-C-C-A-G-C-AG-ACA-A-T-A-CACTG-CT-CG-A----T-------GGCTT-AAATG-TAAA
gi|124216 : CGA-CA-AG-T-A-TC-C-T-C-GG-G-AC--ATA--G-G---T-G-T---CA-C-C-A-G-C-AG-A-GAA-T-A-CATTG-CT-CG-A----TG------GG-TT-AAATG-TAAA
gi|124217 : GA-CA-AG-T-A-CC-C-T-CGGG-G-AC--AGA--G-TGCAT-G-T-C-C--C-C-A-G-C-GG-C-G-A-T-G-CA-TG-TT-TG-A----T-------GG-TT-AAGTA-
gi|124218 : -TC-C-T-CGGG-G-AC--A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-A-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAA
gi|124219 : aaattcA-AG-C-A-TC-C-T-CGGA-G-AC--A-A--A-T---T-G-T-C-CA-C-C-T-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AACTA-at
gi|124220 : A-AG-T-A-TC-C-T-CGGG-G-AT--A-A--A-T---T-G-T-C-CC-C-C-A-G-C-AG-A-G-A-T-A-CA-TA-TT-CG-GGACATATCGGTGGG-TT-AGATA-TAAA
gi|124221 : A-AG-T-A-TC-C-T-CGTC-G-AC--A-A--A-T---T-G-T-C-TA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TT-TG-G----T-------GG-TT-TGATA-CAAAat
gi|124222 : A-AG-T-AATCAC-T-CGGG-G-AC----A--A-T---T-G-T-C-CA-C-C-A-GCC-AG-A-G-A-T-A-CA-TG-TT-CGAG----T-------GG-TT-AAATA-CAAA
gi|124223 : -C-T-GGGG-G-ACCAA-A--A-T---T-G-T-C-CA-C-C-A-G-C-AG-A-G-A-T-A-CA-TG-TC----G----T-------GG-TT-AAATA-CAAAa
gi|124224 : -G-AC--A-AGTA-T---C-A-T-C-CA-C-C-A-G-C-AT-A-G-A-T-A-CA-TA-TT-CG-G----T-------GG-TT-AAATA-TAAa
gi|124225 : --A-A--A-T---T-G-T-C-CA-C-C-A-G-C-AT-A-G-A-T-A-CA-TA-TT-CG-T----T-------AA-TT-AAATA-TAAAtat