lowQualScore : 3 1 2 1 1 2 555555555 1 11 2 1 1 1 2 333 222 22 44 1 444 1 22 3 1 1 2
lowQualScore : . . . . . . ......... . .. . . . . . ... ... .. .. . ... . .. . . . .
lowQualScore : 9 3 6 3 3 6 222222222 3 88 6 3 3 3 6 777 666 00 11 5 111 5 11 3 7 7 3
consensus : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-T-TGTTTTGCTA
Reference ( gi|29777 ) : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-T-TGTTTTGCTA
gi|29775 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATA-T---TT-G--T-AT-T-TGTTTTGCTA
gi|29776 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--G-TATG-T---TT-A--C-AT-T-TGTTTTGCTA
gi|29788 : AAATCA-CAAA-TGA-GA--GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AT---TTTTG---CT--T-GATG-T---TT-A--C-AT-T-TGTTTTGCTA
gi|29780 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AAT--TTTTG---CT--T-TATG-T---TT-A--C-AT-T-TGTTTTGC
gi|29779 : AAATCA-CAAA-TGA-GAA-GGGTA-T---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--A-GATG-T---TT-A--C-AT-T-TGTTTTGCTA
gi|29786 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTTT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-GT-T-TGTTT
gi|29782 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTTTCC--A-TTCT-AA-TG-CCAA---TTTTG---CT--T-TATG-T---TT-A--C-AT-T-TGTTTTGCTA
gi|29792 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTA---CC--T-GATG-T---TT-A--G-A--T-AATTTTGCT
gi|29783 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-CATG-T---TT-A--
gi|29798 : AAATCA-CAAA-TGA-AAG-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TTAA--C-A--T-TGTTTTGCTtt
gi|29790 : AAATCA-CAAA-TGA-GAA-GG-TG-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-TATC-T---TT-A--CAAT-T-TG-TTTGCTA
gi|29789 : AAATCA-CAAA-TGA-AAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-T-AA---TTTTG---CT--T-GATG-TATGTT----C-AT-T-TCTTTTG
gi|29797 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-GATG-T---TT-A--
gi|29799 : AAATCA-CAAA-TGA-GAA-TG-TA-G---------TTATTC-CC--A-TTCT-AATTGCC-AA---TTTGT---CT--T-TATG-T---TT-A--C-AT-T-TG-TTTGCTA
gi|29794 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTGTAC-CC--A-TTCT-AA-TG-C-AA---TTTTG---TT--T-GATA-T---TA-A--C-GTCT-TACTTTG
gi|29791 : AAATCA-CAAA-TGA-GAA-AG-TA-G---------TTTTTC-CC--A-TTCT-AA-TG-C-AA---TTT-----CT--T-TATG-T---TT-ACCC-AT-T-T-TTTTGCt
gi|29787 : AAATCAGCAAA-TTA-GAAAGG-TA-T---------TAATTC-CC--A-TT-T-AA-TG-C-AA---TTTTG---CT--T-GATG-----TT-A--CAAT-T-TGTTTTGcta
gi|29778 : AAATCA-CAAA-TG--GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTT
gi|29781 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C--------G-TC--TT-A--C--T-T-CGTTTattccctaatttta
gi|29796 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---CC-----AT--C---TT-A--C--T-T-TGT
gi|29793 : AAATCATCAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C------ATG-T---TT-
gi|29785 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTtgctatttttat
gi|29784 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TT
gi|29795 : AAATGA-CAAA-TGA-GAA-GG-TA-G---------TAATTC-CC--A-TTCT-AA-TG-T-A
gi|29800 : AGTCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CTCAT-GATG-T---TT-A--T-AT-T-TGTTTTGCTAtagctatttttggttgtaacttcattt
gi|29801 : AATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-AT-T-TGGTTT
gi|29802 : AATCAACAAAATGA-GAA-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--TTGATG-T---TT-A--C-AT-T-TGTTTTGCTA
gi|29803 : AATCA-CAAA-TGA-GAA-GG-TA-----------TTATT--CC--A-TTCTAAA-TG-CAAA---TTTTA---CC--T-GATGAT---TT-A--G-AT-
gi|29805 : A-CAAA-TGA-GAA-GG-TA-G---------TTAT-C-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-AT-TGTG-TTTGCTAaattttgt
gi|29806 : A-CAAA-TGA--AA-GG-TA-G---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTTTGTTTTT--T-GATG-T---TT-A--C-AT-T-TG-TTTGCTA
gi|29804 : A-CAAA-TAA-GAA-GG-TA-GAACTCTACTTTATTC-CCTAA-TTCT-AA-TG-A-AATAGTTTTG-------T-AATA-T---GT-A--T--T-T-TGATT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|29810 ): CATTCTAATGCAATTGTTTTGTAATATGTATTTTGATTGGCTA
Unaligned ( gi|29807 ): TGAAAATGGAATAAATACAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29809 ): AACTCGAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29808 ): GTATAAATATATATTCTAATGCAATTGTTTTGTAATATGTATTTTGGTTGGTTA
Alignments
lowQualScore : 3 1 2 1 1 2 555555555 1 11 2 1 1 1 2 333 222 22 33 1 333 1 22 3 1 1
lowQualScore : . . . . . . ......... . .. . . . . . ... ... .. .. . ... . .. . . .
lowQualScore : 8 2 5 2 2 5 000000000 2 77 5 2 2 2 5 555 555 00 66 4 999 4 00 2 6 7
consensus : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
Reference ( family-551 ) : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29775 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATA-T---TT-G--T-AT-TTGT-TTTGCTA
gi|29776 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--G-TATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29777 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29778 : AAATCA-CAAA-TG--GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTT
gi|29779 : AAATCA-CAAA-TGA-GAA-GGGTA-T---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--A-GATG-T---TT-A--C-AT-TTGT-TTTGCTAattccctaatttta
gi|29780 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AAT--TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGT-TTTGC
gi|29781 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C--------G-TC--TT-A--C--T-TCGT-TT
gi|29782 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTTTCC--A-TTCT-AA-TG-CCAA---TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29783 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-CATG-T---TT-A--
gi|29784 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTtt
gi|29785 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TT
gi|29786 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTTT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-GT-TTGT-TT
gi|29787 : AAATCAGCAAA-TTA-GAAAGG-TA-T---------TAATTC-CC--A-TT-T-AA-TG-C-AA---TTTTG---CT--T-GATG-----TT-A--CAAT-TTGT-TTTG
gi|29788 : AAATCA-CAAA-TGA-GA--GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AT---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29789 : AAATCA-CAAA-TGA-AAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-T-AA---TTTTG---CT--T-GATG-TATGTT----C-AT-TTCT-TTTG
gi|29790 : AAATCA-CAAA-TGA-GAA-GG-TG-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-TATC-T---TT-A--CAAT-TTG--TTTGCTA
gi|29791 : AAATCA-CAAA-TGA-GAA-AG-TA-G---------TTTTTC-CC--A-TTCT-AA-TG-C-AA---TTT-----CT--T-TATG-T---TT-ACCC-AT-TT-T-TTTGC
gi|29792 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTA---CC--T-GATG-T---TT-A--G-A--TAAT-TTTGCTcta
gi|29793 : AAATCATCAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C------ATG-T---TT-
gi|29794 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTGTAC-CC--A-TTCT-AA-TG-C-AA---TTTTG---TT--T-GATA-T---TA-A--C-GTCTTAC-TTTGtgctatttttat
gi|29795 : AAATGA-CAAA-TGA-GAA-GG-TA-G---------TAATTC-CC--A-TTCT-AA-TG-T-At
gi|29796 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---CC-----AT--C---TT-A--C--T-TTGT-tagctatttttggttgtaacttcattt
gi|29797 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-GATG-T---TT-A--
gi|29798 : AAATCA-CAAA-TGA-AAG-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TTAA--C-A--TTGT-TTTGCT
gi|29799 : AAATCA-CAAA-TGA-GAA-TG-TA-G---------TTATTC-CC--A-TTCT-AATTGCC-AA---TTTGT---CT--T-TATG-T---TT-A--C-AT-TTG--TTTGCTA
gi|29800 : AGTCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CTCAT-GATG-T---TT-A--T-AT-TTGT-TTTGCTA
gi|29801 : AATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGG-TTT
gi|29802 : AATCAACAAAATGA-GAA-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--TTGATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29803 : AATCA-CAAA-TGA-GAA-GG-TA-----------TTATT--CC--A-TTCTAAA-TG-CAAA---TTTTA---CC--T-GATGAT---TT-A--G-AT-
gi|29804 : A-CAAA-TAA-GAA-GG-TA-GAACTCTACTTTATTC-CCTAA-TTCT-AA-TG-A-AATAGTTTTG-------T-AATA-T---GT-A--T--T-TTGA-TTaattttgt
gi|29805 : A-CAAA-TGA-GAA-GG-TA-G---------TTAT-C-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-A--TTGTGTTTGCTAgccta
gi|29806 : A-CAAA-TGA--AA-GG-TA-G---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTTTGTTTTT--T-GATG-T---TT-A--C-AT-TTG--TTTGCTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29810 ): CATTCTAATGCAATTGTTTTGTAATATGTATTTTGATTGGCTA
Unaligned ( gi|29807 ): TGAAAATGGAATAAATACAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29809 ): AACTCGAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29808 ): GTATAAATATATATTCTAATGCAATTGTTTTGTAATATGTATTTTGGTTGGTTA
Alignments
lowQualScore : 3 1 2 1 1 2 555555555 1 11 2 1 1 1 2 333 222 22 33 1 333 1 22 3 1 1
lowQualScore : . . . . . . ......... . .. . . . . . ... ... .. .. . ... . .. . . .
lowQualScore : 8 2 5 2 2 5 000000000 2 77 5 2 2 2 5 555 555 00 66 4 999 4 00 2 6 7
consensus : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
Reference ( family-551 ) : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29775 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATA-T---TT-G--T-AT-TTGT-TTTGCTA
gi|29776 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--G-TATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29777 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29778 : AAATCA-CAAA-TG--GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTT
gi|29779 : AAATCA-CAAA-TGA-GAA-GGGTA-T---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--A-GATG-T---TT-A--C-AT-TTGT-TTTGCTAattccctaatttta
gi|29780 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AAT--TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGT-TTTGC
gi|29781 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C--------G-TC--TT-A--C--T-TCGT-TT
gi|29782 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTTTCC--A-TTCT-AA-TG-CCAA---TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29783 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-CATG-T---TT-A--
gi|29784 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTtt
gi|29785 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TT
gi|29786 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTTT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-GT-TTGT-TT
gi|29787 : AAATCAGCAAA-TTA-GAAAGG-TA-T---------TAATTC-CC--A-TT-T-AA-TG-C-AA---TTTTG---CT--T-GATG-----TT-A--CAAT-TTGT-TTTG
gi|29788 : AAATCA-CAAA-TGA-GA--GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AT---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29789 : AAATCA-CAAA-TGA-AAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-T-AA---TTTTG---CT--T-GATG-TATGTT----C-AT-TTCT-TTTG
gi|29790 : AAATCA-CAAA-TGA-GAA-GG-TG-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-TATC-T---TT-A--CAAT-TTG--TTTGCTA
gi|29791 : AAATCA-CAAA-TGA-GAA-AG-TA-G---------TTTTTC-CC--A-TTCT-AA-TG-C-AA---TTT-----CT--T-TATG-T---TT-ACCC-AT-TT-T-TTTGC
gi|29792 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTA---CC--T-GATG-T---TT-A--G-A--TAAT-TTTGCTcta
gi|29793 : AAATCATCAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C------ATG-T---TT-
gi|29794 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTGTAC-CC--A-TTCT-AA-TG-C-AA---TTTTG---TT--T-GATA-T---TA-A--C-GTCTTAC-TTTGtgctatttttat
gi|29795 : AAATGA-CAAA-TGA-GAA-GG-TA-G---------TAATTC-CC--A-TTCT-AA-TG-T-At
gi|29796 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---CC-----AT--C---TT-A--C--T-TTGT-tagctatttttggttgtaacttcattt
gi|29797 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-GATG-T---TT-A--
gi|29798 : AAATCA-CAAA-TGA-AAG-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TTAA--C-A--TTGT-TTTGCT
gi|29799 : AAATCA-CAAA-TGA-GAA-TG-TA-G---------TTATTC-CC--A-TTCT-AATTGCC-AA---TTTGT---CT--T-TATG-T---TT-A--C-AT-TTG--TTTGCTA
gi|29800 : AGTCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CTCAT-GATG-T---TT-A--T-AT-TTGT-TTTGCTA
gi|29801 : AATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGG-TTT
gi|29802 : AATCAACAAAATGA-GAA-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--TTGATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29803 : AATCA-CAAA-TGA-GAA-GG-TA-----------TTATT--CC--A-TTCTAAA-TG-CAAA---TTTTA---CC--T-GATGAT---TT-A--G-AT-
gi|29804 : A-CAAA-TAA-GAA-GG-TA-GAACTCTACTTTATTC-CCTAA-TTCT-AA-TG-A-AATAGTTTTG-------T-AATA-T---GT-A--T--T-TTGA-TTaattttgt
gi|29805 : A-CAAA-TGA-GAA-GG-TA-G---------TTAT-C-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-A--TTGTGTTTGCTAgccta
gi|29806 : A-CAAA-TGA--AA-GG-TA-G---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTTTGTTTTT--T-GATG-T---TT-A--C-AT-TTG--TTTGCTA
blockSeqs : G A A A G C AACTCTACT T TA A A T C C TAG TTT CA TG A ATG A CC A C G
blockSeqs : T . A . . C . . . A . . . A T . . T . C . . A . .
blockSeqs : A . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons :
originalCons : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
finalCons : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29810 ): CATTCTAATGCAATTGTTTTGTAATATGTATTTTGATTGGCTA
Unaligned ( gi|29807 ): TGAAAATGGAATAAATACAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29809 ): AACTCGAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29808 ): GTATAAATATATATTCTAATGCAATTGTTTTGTAATATGTATTTTGGTTGGTTA
Alignments
lowQualScore : 3 1 2 1 1 2 555555555 1 11 2 1 1 1 2 333 222 22 33 1 333 1 22 3 1 1
lowQualScore : . . . . . . ......... . .. . . . . . ... ... .. .. . ... . .. . . .
lowQualScore : 8 2 5 2 2 5 000000000 2 77 5 2 2 2 5 555 555 00 66 4 999 4 00 2 6 7
consensus : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
Reference ( family-551 ) : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29775 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATA-T---TT-G--T-AT-TTGT-TTTGCTA
gi|29776 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--G-TATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29777 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29778 : AAATCA-CAAA-TG--GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTT
gi|29779 : AAATCA-CAAA-TGA-GAA-GGGTA-T---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--A-GATG-T---TT-A--C-AT-TTGT-TTTGCTAattccctaatttta
gi|29780 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AAT--TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGT-TTTGC
gi|29781 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C--------G-TC--TT-A--C--T-TCGT-TT
gi|29782 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTTTCC--A-TTCT-AA-TG-CCAA---TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29783 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-CATG-T---TT-A--
gi|29784 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTtt
gi|29785 : AAATCA-CAAA-TGAAGAA-GG-TACG---------TTATTC-C---A-TTCT-AA-TG-C-AA---TT
gi|29786 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTTT-AA-TG-C-AA---TTTTG---CT--T-GATG-T---TT-A--C-GT-TTGT-TT
gi|29787 : AAATCAGCAAA-TTA-GAAAGG-TA-T---------TAATTC-CC--A-TT-T-AA-TG-C-AA---TTTTG---CT--T-GATG-----TT-A--CAAT-TTGT-TTTG
gi|29788 : AAATCA-CAAA-TGA-GA--GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AT---TTTTG---CT--T-GATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29789 : AAATCA-CAAA-TGA-AAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-T-AA---TTTTG---CT--T-GATG-TATGTT----C-AT-TTCT-TTTG
gi|29790 : AAATCA-CAAA-TGA-GAA-GG-TG-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-TATC-T---TT-A--CAAT-TTG--TTTGCTA
gi|29791 : AAATCA-CAAA-TGA-GAA-AG-TA-G---------TTTTTC-CC--A-TTCT-AA-TG-C-AA---TTT-----CT--T-TATG-T---TT-ACCC-AT-TT-T-TTTGC
gi|29792 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTA---CC--T-GATG-T---TT-A--G-A--TAAT-TTTGCTcta
gi|29793 : AAATCATCAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---C------ATG-T---TT-
gi|29794 : AAATCA-CAAA-TGA-GAA-GG-TA-G---------TTGTAC-CC--A-TTCT-AA-TG-C-AA---TTTTG---TT--T-GATA-T---TA-A--C-GTCTTAC-TTTGtgctatttttat
gi|29795 : AAATGA-CAAA-TGA-GAA-GG-TA-G---------TAATTC-CC--A-TTCT-AA-TG-T-At
gi|29796 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TGTTC---CC-----AT--C---TT-A--C--T-TTGT-tagctatttttggttgtaacttcattt
gi|29797 : AAATCA-CAAA-TAA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-CA---TTTTG---CT--T-GATG-T---TT-A--
gi|29798 : AAATCA-CAAA-TGA-AAG-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TTAA--C-A--TTGT-TTTGCT
gi|29799 : AAATCA-CAAA-TGA-GAA-TG-TA-G---------TTATTC-CC--A-TTCT-AATTGCC-AA---TTTGT---CT--T-TATG-T---TT-A--C-AT-TTG--TTTGCTA
gi|29800 : AGTCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CTCAT-GATG-T---TT-A--T-AT-TTGT-TTTGCTA
gi|29801 : AATCA-CAAA-TGA-GAA-GG-TA-G---------TTATTC-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-AT-TTGG-TTT
gi|29802 : AATCAACAAAATGA-GAA-GG-TA-G---------TTATTC-CC--AATTCT-AA-TG-C-AA---TTTTG---CT--TTGATG-T---TT-A--C-AT-TTGT-TTTGCTA
gi|29803 : AATCA-CAAA-TGA-GAA-GG-TA-----------TTATT--CC--A-TTCTAAA-TG-CAAA---TTTTA---CC--T-GATGAT---TT-A--G-AT-
gi|29804 : A-CAAA-TAA-GAA-GG-TA-GAACTCTACTTTATTC-CCTAA-TTCT-AA-TG-A-AATAGTTTTG-------T-AATA-T---GT-A--T--T-TTGA-TTaattttgt
gi|29805 : A-CAAA-TGA-GAA-GG-TA-G---------TTAT-C-CC--A-TTCT-AA-TG-C-AA---TTTTG---CT--T-TATG-T---TT-A--C-A--TTGTGTTTGCTAgccta
gi|29806 : A-CAAA-TGA--AA-GG-TA-G---------TTATTC-C---A-TTCT-AA-TG-C-AA---TTTTGTTTTT--T-GATG-T---TT-A--C-AT-TTG--TTTGCTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29810 ): CATTCTAATGCAATTGTTTTGTAATATGTATTTTGATTGGCTA
Unaligned ( gi|29807 ): TGAAAATGGAATAAATACAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29809 ): AACTCGAATTCTAATGCAATTGTTTTGTAACATGTATTTTGATTGGCTA
Unaligned ( gi|29808 ): GTATAAATATATATTCTAATGCAATTGTTTTGTAATATGTATTTTGGTTGGTTA