lowQualScore : 33 1 2 1 1 1 11 1 1 1 0 2 1 2 0 0 11 2 2 1 1 444 1
lowQualScore : .. . . . . . .. . . . . . . . . . .. . . . . ... .
lowQualScore : 33 2 4 1 1 1 66 1 1 4 7 8 4 1 7 7 55 6 6 3 3 888 3
consensus : ATT-CTATCTA-A-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
Reference ( gi|57418 ) : ATC-CTATCTA-A-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57419 : ATT-CTATCTA-A-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57421 : ATT-CTATCTA-A-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57420 : ATT-CTATCTA-A-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CTGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57423 : ATT-CTATCTA-A-TA-GCTG-TG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCAGT-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57424 : ATC-CTATCTA-A-CA-GCTG-TG-A--AA-TTCAT-TT-CG--AG-GG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57422 : ATT-TTATCTA-A-TA-GCTG-TG-A--AA-TTTAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--TC-TA-CAT-T-G---CGAG-TATAGAGAAGGAT
gi|57425 : ATT-CTATCTA-A-AA-GGTG-TG-A--AA-TTAAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57426 : ATT-CTATCTA-A-TA-GCTA-TG-A--A--TTCAT-TT-CGG-AGTGG-ATC-A-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATA-GGAAGGAT
gi|57430 : ATT-CTATCCA------GCTG-TG-A--AA-TTCAT-TT-CGGCAGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-GTTTCGAG-TATAGGGAAGGA
gi|57431 : ATT-CTCTCTA-A-TA-GCTG-TGAA--AA-TTCA--TT-CGG-AGTGG--TCCA-C-T-CTGATTTT--GC-TACCAT-T-G---CGAG-TATAGGGAAGGAT
gi|57429 : ATT-CTATCTA-A-AA-GGCG-TG-A--AA-TTAAA-TT-CCG-AGTGG-ATCCA-C-T-CTGC-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57433 : ATT-CTA-CTA-A-TA-GATG-TG-A--A--TTCCT-TT-CGG--GTGGGATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-GC--CGAG-TATAGGGAAGGAT
gi|57449 : ATC-CTATCTA-A-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--G
gi|57427 : ATT-CCATCTA-A-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-A---C
gi|57428 : ATT-CCATCTA-A-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCG-C-T-CTGA-TTT--GC-TA-CAC-T-G---CAAG-
gi|57434 : ATT-TTATCAA-AATATGCTG-TG-ACAAA-TTCAT-TT-CGG-AGTGGGATCCATC-T-CCGA-TTT--GC-TA-CAT-T-G---CG-G-TATAGGG-AGGATttta
gi|57435 : ATCTCTATCTA-A-TA-GCTG-TG----AA-TTCAT-TT-CGG-AGTGGTATGCA-CGT-CCGA-TTTTGGCGTA-CATGT-G---CGAG-TAT-GGGAAGG
gi|57436 : ATT-CTATCTA-A-TA-GCTG-TG-A--AA-TTC-------------------CA-C-T-CCAA-TTC--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57450 : ATT-CTATCTA-A-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--G
gi|57452 : ATT-CTATCTA-A-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-T-CCGA-TTT--G
gi|57451 : ATT-CTATCTA-A-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CTGA-TTT--G
gi|57432 : ATT-CTATCTA-A-TA-GCCG-TG-A--AGTTTCA--TT-CGG-ATTGGAATCTG-C-T-CCAA-TTT--GC-TATCAT-T-GT--CAGG-TATGGGAAAGGAT
gi|57437 : TT-CCATCTA-AATA-GCTGGTG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-TGG---CGAGTTATAGGAAAGGAT
gi|57438 : TT-CCATCTA-A-TA-GCT--TG-A--AA-TTCAT-TT-CGG-AGTGG-A-CCA---T-CCGA-TTT--GCTTA-CAT-T-G---CGAG-TATAGGGAAG
gi|57440 : TC-GTATCAA-T-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTT-CCGA-TTT--GC-TA-CAT-G-G---CAAG-TATAGGGAAGTATat
gi|57439 : TC-GTATCAA-T-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTT-CCGA-TTT--GC-TA-CAT-G-G---CAAG-TATAGGGAAGTAT
gi|57441 : C-CTATCTA-A-TA-GCTG-TG-A--AA-TTAAT-TT-TGG-AGTGG-ATCCA-C-T-CCGA-TTT--GA-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57442 : C-CCATATATA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGAGG-ATTCG-C-T-CCAA-TTT--GC-TA-AAT-T-G---CGAG-TATAAGAAAGGAT
gi|57443 : -CTATCTA-A-TA-GCTG-TG-A--AA-TTGAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57444 : -CCATCTA-A-TA-GATG-TG-A--AA-TTGTT-TT-CGA-GGTGT-ATCCG-C-T-CGGA-TTT--GC-TA-CAT-T-A---CGAA-CAAAGGAAAAGAT
gi|57445 : TATCTA-A-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--GC-TA-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57446 : TATCT----TA-GTTG-CG-A--AA-TTCAA-TT-CGG-AGTGG-ATCCA---T-CTGA-ATT--GC-TA-CAT-T-G---CAGA-TAACGGGAAGTAT
gi|57447 : TCTA-A-TA-GCTG-TG-A--AT-GTCATGTT-CGG-AGTGG-ATTC--C-T-C-GA-TTT--GC-TA-CAT-T-G---CGAG-TAT
gi|57453 : TCTA-A-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-T-CCGA-TTT--G
gi|57448 : -GCTG-CG-A--AA-TTGGG-TT-CGG-AGTGG-ATCCG-C-T-CTGA-TTT--GC-TA-CAT-T-G---CTAG-TATAGGGAAGGAT
gi|57454 : CAT-TT-TGG-AGTGA-ATCCA-C-T-CCGA-TTT---C-TA-CAT-T-G---CGAG-TATAGGAAAGAAT
gi|57446 : CAA-TT-CAG-A-TGG-ATCCA-C-T-CCGA-ATT--G
gi|57445 : tatcttagttgcgaaattT-CGG-AGTGG-ATCCA-C-T-CCGA-ctacattgcagataacgggaagtat
gi|57419 : tatctaatagctgtgaaattcattT-CGG-AGTGG-ATCCA-C-T-CCGA-tttgctacattgcgagtatagggaaggat
gi|57421 : attctatctaatagttgcgaaattcattT-CGG-AGTGG-ATCCA-C-T-CCAA-tttgctacattgcgagtatagggaaggat
gi|57443 : attctatctaatagttgtgaaattcattT-CGG-AGTGG-ATCCA-C-T-CCGA-tttgctacattgcgagtatagggaaggat
gi|57420 : ctatctaatagctgtgaaattgattT-CAG-AGTGG-ATCCA-C-T-CCGA-tttgctacattgcgagtatagggaaggat
gi|57441 : attctatctaatagttgcgaaattcattT-CGG-AGTGG-ATCCA-C-T-CCAA-tttgctacattgcgagtatagggaaggat
gi|57422 : cctatctaatagctgtgaaattaattT-CGG-AGTGG-ATCCA-C-T-CCGA-tttgatacattgcgagtatagggaaggat
gi|57425 : attttatctaatagctgtgaaatttattT-CGG-AGTGG-ATCCA-C-T-CCGA-ttttctacattgcgagtatagagaaggat
gi|57426 : attctatctaaaaggtgtgaaattaattT-CGG-AGTG--ATCCA-C-T-CCGA-tttgctacattgcgagtatagggaaggat
gi|57430 : attctatctaatagctatgaattcattT-CGG-AGTGG-ATCCA-C-TGCCGA-tttgctacattgcgagtataggaaggat
gi|57437 : attctatccagctgtgaaattcattT-CGG-AGTGG-ATCCA-C-T-CCGA-tttgctacattgtttcgagtatagggaagga
gi|57449 : ttccatctaaatagctggtgaaattcatttT-CGG-AGTGG-ATCCA-C-T-CCGA-tttgctacattggcgagttataggaaaggat
gi|57427 : caaaT-CGG-AGTGG-ATCCA-C-T-CCGA-aatgaatttcacagctattagataggat
gi|57428 : attccatctaatagctgcgaaatttgttT-CAG-AGCGG-ATCCA-C-T-CCGA-tttgctacattac
gi|57448 : attccatctaatagctgcgaaatttgttT-CAG-AGCGG-ATCCA-C-T-CCGA-tttgctacactgcaagtttta
gi|57450 : gctgcgaaattgggtT-CGG-AGTGG-ATCCA-C-T-CCGA-tttgctacattgctagtatagggaaggat
gi|57452 : caaaT-CGG-AGTGG-ATCCA-C-T-CCAA-aatgaatttcgcaactattagatagaat
gi|57451 : caaaT-CAG-AGTGG-ATCCA-C-T-CCGA-aatgaatttcacaactattagatagaat
gi|57454 : caaaT-CGG-AGTGG-ATTCA-C-T-CCAA-aatgaatttcgcaactattagatagaat
gi|57453 : cattT-CGG-AGTGG-ATCCA-C-T-CCGA-tttctacattgcgagtataggaaagaat
Alignments
lowQualScore : 2 1 11 1 11 1 1 2 1 4 2 3 1 11 1 1 2 1 1 444 1
lowQualScore : . . .. . .. . . . . . . . . .. . . . . . ... .
lowQualScore : 3 1 88 1 55 1 1 2 1 3 2 2 1 55 2 2 5 2 2 777 3
consensus : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
Reference ( family-537 ) : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57418 : ATCCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57419 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57420 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCTGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57421 : ATTCTATCTAA-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57422 : ATTTTATCTAA-TA-GCTG-TG-A--AA-TTTAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--TC-T-A-CAT-T-G---CGAG-TATAGAGAAGGAT
gi|57423 : ATTCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCAGT-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57424 : ATCCTATCTAA-CA-GCTG-TG-A--AA-TTCAT-TT-CG--AG-GG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57425 : ATTCTATCTAA-AA-GGTG-TG-A--AA-TTAAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57426 : ATTCTATCTAA-TA-GCTA-TG-A--A--TTCAT-TT-CGG-AGTGG-ATC-A-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATA-GGAAGGAT
gi|57427 : ATTCCATCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-A---C
gi|57428 : ATTCCATCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCG-C-TCTGA-TTT--GC-T-A-CAC-T-G---CAAG-
gi|57429 : ATTCTATCTAA-AA-GGCG-TG-A--AA-TTAAA-TT-CCG-AGTGG-ATCCA-C-TCTGC-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGATttta
gi|57430 : ATTCTATCCA-----GCTG-TG-A--AA-TTCAT-TT-CGGCAGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-GTTTCGAG-TATAGGGAAGGA
gi|57431 : ATTCTCTCTAA-TA-GCTG-TGAA--AA-TTCA--TT-CGG-AGTGG--TCCA-C-TCTGATTTT--GC-T-ACCAT-T-G---CGAG-TATAGGGAAGGAT
gi|57432 : ATTCTATCTAA-TA-GCCG-TG-A--AGTTTCA--TT-CGG-ATTGGAATCTG-C-TCCAA-TTT--GC-T-ATCAT-T-GT--CAGG-TATGGGAAAGGAT
gi|57433 : ATTCTA-CTAA-TA-GATG-TG-A--A--TTCCT-TT-CGG--GTGGGATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-GC--CGAG-TATAGGGAAGGAT
gi|57434 : ATTTTATCAAAATATGCTG-TG-ACAAA-TTCAT-TT-CGG-AGTGGGATCCATC-TCCGA-TTT--GC-T-A-CAT-T-G---CG-G-TATAGGG-AGGAT
gi|57435 : TCTATCTAA-TA-GCTG-TG----AA-TTCAT-TT-CGG-AGTGGTATGCA-CGTCCGA-TTTTGGCGT-A-CATGT-G---CGAG-TAT-GGGAAGG
gi|57436 : atcATTCTATCTAA-TA-GCTG-TG-A--AA-TTC-------------------CA-C-TCCAA-TTC--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57437 : TTCCATCTAAATA-GCTGGTG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-TGG---CGAGTTATAGGAAAGGAT
gi|57438 : TTCCATCTAA-TA-GCT--TG-A--AA-TTCAT-TT-CGG-AGTGG-A-CCA---TCCGA-TTT--GC-TTA-CAT-T-G---CGAG-TATAGGGAAG
gi|57439 : TATCAAT-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTTCCGA-TTT--GC-T-A-CAT-G-G---CAAG-TATAGGGAAGTATat
gi|57440 : tcgTATCAAT-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTTCCGA-TTT--GC-T-A-CAT-G-G---CAAG-TATAGGGAAGTAT
gi|57441 : tcgCTATCTAA-TA-GCTG-TG-A--AA-TTAAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--GA-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57442 : cA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGAGG-ATTCG-C-TCCAA-TTT--GC-T-A-AAT-T-G---CGAG-TATAAGAAAGGAT
gi|57443 : cccatatatCTATCTAA-TA-GCTG-TG-A--AA-TTGAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57444 : CCATCTAA-TA-GATG-TG-A--AA-TTGTT-TT-CGA-GGTGT-ATCCG-C-TCGGA-TTT--GC-T-A-CAT-T-A---CGAA-CAAAGGAAAAGAT
gi|57445 : TATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57446 : TATCT---TA-GTTG-CG-A--AA-TTCAA-TT-CGG-AGTGG-ATCCA---TCTGA-ATT--GC-T-A-CAT-T-G---CAGA-TAACGGGAAGTAT
gi|57447 : TCTAA-TA-GCTG-TG-A--AT-GTCATGTT-CGG-AGTGG-ATTC--C-TC-GA-TTT--GC-T-A-CAT-T-G---CGAG-TAT
gi|57448 : -GCTG-CG-A--AA-TTGGG-TT-CGG-AGTGG-ATCCG-C-TCTGA-TTT--GC-T-A-CAT-T-G---CTAG-TATAGGGAAGGAT
gi|57449 : ATCCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57450 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57451 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCTGA-TTT--G
gi|57452 : ATTCTATCTAA-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57453 : TCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57454 : CAT-TT-TGG-AGTGA-ATCCA-C-TCCGA-TTT---C-T-A-CAT-T-G---CGAG-TATAGGAAAGAAT
Alignments
lowQualScore : 2 1 11 1 11 1 1 2 1 4 2 3 1 11 1 1 2 1 1 444 1
lowQualScore : . . .. . .. . . . . . . . . .. . . . . . ... .
lowQualScore : 3 1 88 1 55 1 1 2 1 3 2 2 1 55 2 2 5 2 2 777 3
consensus : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
Reference ( family-537 ) : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57418 : ATCCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57419 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57420 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCTGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57421 : ATTCTATCTAA-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57422 : ATTTTATCTAA-TA-GCTG-TG-A--AA-TTTAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--TC-T-A-CAT-T-G---CGAG-TATAGAGAAGGAT
gi|57423 : ATTCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCAGT-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57424 : ATCCTATCTAA-CA-GCTG-TG-A--AA-TTCAT-TT-CG--AG-GG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57425 : ATTCTATCTAA-AA-GGTG-TG-A--AA-TTAAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57426 : ATTCTATCTAA-TA-GCTA-TG-A--A--TTCAT-TT-CGG-AGTGG-ATC-A-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATA-GGAAGGAT
gi|57427 : ATTCCATCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-A---C
gi|57428 : ATTCCATCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCG-C-TCTGA-TTT--GC-T-A-CAC-T-G---CAAG-
gi|57429 : ATTCTATCTAA-AA-GGCG-TG-A--AA-TTAAA-TT-CCG-AGTGG-ATCCA-C-TCTGC-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGATttta
gi|57430 : ATTCTATCCA-----GCTG-TG-A--AA-TTCAT-TT-CGGCAGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-GTTTCGAG-TATAGGGAAGGA
gi|57431 : ATTCTCTCTAA-TA-GCTG-TGAA--AA-TTCA--TT-CGG-AGTGG--TCCA-C-TCTGATTTT--GC-T-ACCAT-T-G---CGAG-TATAGGGAAGGAT
gi|57432 : ATTCTATCTAA-TA-GCCG-TG-A--AGTTTCA--TT-CGG-ATTGGAATCTG-C-TCCAA-TTT--GC-T-ATCAT-T-GT--CAGG-TATGGGAAAGGAT
gi|57433 : ATTCTA-CTAA-TA-GATG-TG-A--A--TTCCT-TT-CGG--GTGGGATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-GC--CGAG-TATAGGGAAGGAT
gi|57434 : ATTTTATCAAAATATGCTG-TG-ACAAA-TTCAT-TT-CGG-AGTGGGATCCATC-TCCGA-TTT--GC-T-A-CAT-T-G---CG-G-TATAGGG-AGGAT
gi|57435 : TCTATCTAA-TA-GCTG-TG----AA-TTCAT-TT-CGG-AGTGGTATGCA-CGTCCGA-TTTTGGCGT-A-CATGT-G---CGAG-TAT-GGGAAGG
gi|57436 : atcATTCTATCTAA-TA-GCTG-TG-A--AA-TTC-------------------CA-C-TCCAA-TTC--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57437 : TTCCATCTAAATA-GCTGGTG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-TGG---CGAGTTATAGGAAAGGAT
gi|57438 : TTCCATCTAA-TA-GCT--TG-A--AA-TTCAT-TT-CGG-AGTGG-A-CCA---TCCGA-TTT--GC-TTA-CAT-T-G---CGAG-TATAGGGAAG
gi|57439 : TATCAAT-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTTCCGA-TTT--GC-T-A-CAT-G-G---CAAG-TATAGGGAAGTATat
gi|57440 : tcgTATCAAT-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTTCCGA-TTT--GC-T-A-CAT-G-G---CAAG-TATAGGGAAGTAT
gi|57441 : tcgCTATCTAA-TA-GCTG-TG-A--AA-TTAAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--GA-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57442 : cA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGAGG-ATTCG-C-TCCAA-TTT--GC-T-A-AAT-T-G---CGAG-TATAAGAAAGGAT
gi|57443 : cccatatatCTATCTAA-TA-GCTG-TG-A--AA-TTGAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57444 : CCATCTAA-TA-GATG-TG-A--AA-TTGTT-TT-CGA-GGTGT-ATCCG-C-TCGGA-TTT--GC-T-A-CAT-T-A---CGAA-CAAAGGAAAAGAT
gi|57445 : TATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57446 : TATCT---TA-GTTG-CG-A--AA-TTCAA-TT-CGG-AGTGG-ATCCA---TCTGA-ATT--GC-T-A-CAT-T-G---CAGA-TAACGGGAAGTAT
gi|57447 : TCTAA-TA-GCTG-TG-A--AT-GTCATGTT-CGG-AGTGG-ATTC--C-TC-GA-TTT--GC-T-A-CAT-T-G---CGAG-TAT
gi|57448 : -GCTG-CG-A--AA-TTGGG-TT-CGG-AGTGG-ATCCG-C-TCTGA-TTT--GC-T-A-CAT-T-G---CTAG-TATAGGGAAGGAT
gi|57449 : ATCCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57450 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57451 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCTGA-TTT--G
gi|57452 : ATTCTATCTAA-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57453 : TCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57454 : CAT-TT-TGG-AGTGA-ATCCA-C-TCCGA-TTT---C-T-A-CAT-T-G---CGAG-TATAGGAAAGAAT
blockSeqs : A T GT A CA T G T C A G G T TG G T C G G TTT T
blockSeqs : A . C . . . . T . G T T . . . . T . . T .
blockSeqs : . . C . . . . . . G . T . . . . . . . C .
blockSeqs : . . T . . . . . . T . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . C . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
finalCons : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
Alignments
lowQualScore : 2 1 11 1 11 1 1 2 1 4 2 3 1 11 1 1 2 1 1 444 1
lowQualScore : . . .. . .. . . . . . . . . .. . . . . . ... .
lowQualScore : 3 1 88 1 55 1 1 2 1 3 2 2 1 55 2 2 5 2 2 777 3
consensus : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
Reference ( family-537 ) : ATTCTATCTAA-TA-GCTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57418 : ATCCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57419 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57420 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCTGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57421 : ATTCTATCTAA-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57422 : ATTTTATCTAA-TA-GCTG-TG-A--AA-TTTAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--TC-T-A-CAT-T-G---CGAG-TATAGAGAAGGAT
gi|57423 : ATTCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCAGT-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57424 : ATCCTATCTAA-CA-GCTG-TG-A--AA-TTCAT-TT-CG--AG-GG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57425 : ATTCTATCTAA-AA-GGTG-TG-A--AA-TTAAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57426 : ATTCTATCTAA-TA-GCTA-TG-A--A--TTCAT-TT-CGG-AGTGG-ATC-A-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATA-GGAAGGAT
gi|57427 : ATTCCATCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-A---C
gi|57428 : ATTCCATCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCG-C-TCTGA-TTT--GC-T-A-CAC-T-G---CAAG-
gi|57429 : ATTCTATCTAA-AA-GGCG-TG-A--AA-TTAAA-TT-CCG-AGTGG-ATCCA-C-TCTGC-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGATttta
gi|57430 : ATTCTATCCA-----GCTG-TG-A--AA-TTCAT-TT-CGGCAGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-GTTTCGAG-TATAGGGAAGGA
gi|57431 : ATTCTCTCTAA-TA-GCTG-TGAA--AA-TTCA--TT-CGG-AGTGG--TCCA-C-TCTGATTTT--GC-T-ACCAT-T-G---CGAG-TATAGGGAAGGAT
gi|57432 : ATTCTATCTAA-TA-GCCG-TG-A--AGTTTCA--TT-CGG-ATTGGAATCTG-C-TCCAA-TTT--GC-T-ATCAT-T-GT--CAGG-TATGGGAAAGGAT
gi|57433 : ATTCTA-CTAA-TA-GATG-TG-A--A--TTCCT-TT-CGG--GTGGGATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-GC--CGAG-TATAGGGAAGGAT
gi|57434 : ATTTTATCAAAATATGCTG-TG-ACAAA-TTCAT-TT-CGG-AGTGGGATCCATC-TCCGA-TTT--GC-T-A-CAT-T-G---CG-G-TATAGGG-AGGAT
gi|57435 : TCTATCTAA-TA-GCTG-TG----AA-TTCAT-TT-CGG-AGTGGTATGCA-CGTCCGA-TTTTGGCGT-A-CATGT-G---CGAG-TAT-GGGAAGG
gi|57436 : atcATTCTATCTAA-TA-GCTG-TG-A--AA-TTC-------------------CA-C-TCCAA-TTC--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57437 : TTCCATCTAAATA-GCTGGTG-A--AA-TTCAT-TTTCGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-TGG---CGAGTTATAGGAAAGGAT
gi|57438 : TTCCATCTAA-TA-GCT--TG-A--AA-TTCAT-TT-CGG-AGTGG-A-CCA---TCCGA-TTT--GC-TTA-CAT-T-G---CGAG-TATAGGGAAG
gi|57439 : TATCAAT-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTTCCGA-TTT--GC-T-A-CAT-G-G---CAAG-TATAGGGAAGTATat
gi|57440 : tcgTATCAAT-TA-G-TG-CG-A--AA-TTCAT-TT-CGG-AGT-G-ATCCA-CTTCCGA-TTT--GC-T-A-CAT-G-G---CAAG-TATAGGGAAGTAT
gi|57441 : tcgCTATCTAA-TA-GCTG-TG-A--AA-TTAAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--GA-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57442 : cA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGAGG-ATTCG-C-TCCAA-TTT--GC-T-A-AAT-T-G---CGAG-TATAAGAAAGGAT
gi|57443 : cccatatatCTATCTAA-TA-GCTG-TG-A--AA-TTGAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57444 : CCATCTAA-TA-GATG-TG-A--AA-TTGTT-TT-CGA-GGTGT-ATCCG-C-TCGGA-TTT--GC-T-A-CAT-T-A---CGAA-CAAAGGAAAAGAT
gi|57445 : TATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--GC-T-A-CAT-T-G---CGAG-TATAGGGAAGGAT
gi|57446 : TATCT---TA-GTTG-CG-A--AA-TTCAA-TT-CGG-AGTGG-ATCCA---TCTGA-ATT--GC-T-A-CAT-T-G---CAGA-TAACGGGAAGTAT
gi|57447 : TCTAA-TA-GCTG-TG-A--AT-GTCATGTT-CGG-AGTGG-ATTC--C-TC-GA-TTT--GC-T-A-CAT-T-G---CGAG-TAT
gi|57448 : -GCTG-CG-A--AA-TTGGG-TT-CGG-AGTGG-ATCCG-C-TCTGA-TTT--GC-T-A-CAT-T-G---CTAG-TATAGGGAAGGAT
gi|57449 : ATCCTATCTAA-TA-GCTG-TG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57450 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57451 : ATTCTATCTAA-TA-GTTG-CG-A--AA-TTCAT-TT-CGG-AGTGG-ATCCA-C-TCTGA-TTT--G
gi|57452 : ATTCTATCTAA-TA-GTTG-TG-A--AA-TTCAT-TT-TGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57453 : TCTAA-TA-GCTG-CG-A--AA-TTTGT-TT-CGG-AGTGG-ATCCA-C-TCCGA-TTT--G
gi|57454 : CAT-TT-TGG-AGTGA-ATCCA-C-TCCGA-TTT---C-T-A-CAT-T-G---CGAG-TATAGGAAAGAAT