lowQualScore : 2222222
lowQualScore : 7 2 1 3 2 22 1 3 11 888888 1 8888888 3 11 1 1 1 1 2 77777 22 2 77777 1 666 6 1
lowQualScore : . . . . . .. . . .. ...... . ....... . .. . . . . . ..... .. . ..... . ... . .
lowQualScore : 1 3 1 3 2 66 1 2 55 555555 1 0000000 2 55 1 1 1 1 2 22222 66 2 77777 2 555 9 8
consensus : TTCAATCT-G-T-AA-TAAA--C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G---GTTTTTT-TTTA-ATTTA-TATTTTTT
Reference ( gi|48373 ) : TTCAGTCT-G-T-AA-TAAA--C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G---GTTTTTT-TTTA-ATTCA-TATTTTTT
gi|48374 : TTCAATCT-G-T-AA-TAAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G---ATTTCTT------ATTTA-TATTTTT
gi|48390 : TTCA-TCT-G-T-AA-TAAA--C-CCT--C------CA-T-------TTCAA-TT--T-T-T-G-TTTT-GC-----G--G-A---G-TTTTT-TTTA-ATTCATTATTTTTT
gi|48377 : TTCAATCT-G-T-AA-TAAA--C-C-G--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-A---GTTATTT-T----ATTTA-TATTTTTT
gi|48383 : TTCAATCT-G-T-AA-TAAA--C-C-T--T------CA-T-------TTCAA-TT--TCC-T-G-TTTT-GC-----G--G-G------TTTT-ATTA-ATTTA-TATTTTTT
gi|48382 : TTCAATCT-G-T-AA-TAA---C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G-----TTTTA-TTTA-ATTTA-TATTTTTT
gi|48381 : TTCAATCT-G-T-AA-TAA---C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G-----TTTTA-TTTA-ATTTA-TATTTTTT
gi|48393 : TTCAATCT-G-T-AA-TAAA--C-C-T--C------CA-T-------TTCA---T--T-C-T-G--TTT-GC-----G--G-G-----TTTTT-TTAA-ATTCA-TATTTTTT
gi|48375 : TTTAATCT-G-T-AA-CAGA--C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G---GTTTCTT-AT---ATTTA-TATTTTTT
gi|48384 : TTCAATCT-G-T-AA-TAA---C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G------TTTA-TTTA-ATTTA-TATTTTTT
gi|48398 : TTCAATCT-G-T-AA-TAGA--C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G---
gi|48378 : TTCAATCT-G-T-AA-TAGA--C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G---GTGTTTT-T----ATT---TGTTTTTTtgtgtgtgtgtgtgtggtttttttttttattattatttt
gi|48379 : TTCAATCT-G-TTAA-TAAA--C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTTGGC-----GGAG-G---GTTTTT-------ATTTA-TATTTTTT
gi|48389 : TTCAATCT-G-T-AA-TAAA--T-C-T--C------CA-TATGCGT-TTTAA-TT--T-C-T-G-TTTT-GC-----G--G-G---G-TTTTT-TTTA-ATT
gi|48386 : TTCAATCT-G-T-AA-TAAA--C-C-T--C------CA-TATGTAT-TTCAA-TT--T-C-T-G-TTTT-GC-----G--G-G---GTTTTAT-TTt
gi|48385 : TTCAATCT-G-T-AA-TAAA--C-G-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GAG---GTTTCTT-T----ATTTA-AATTGTTTa
gi|48391 : TTCAATCT-G-T-AA-TAAA--T-C-T--C------CA-TATGCAATTTCAA-TT--T-C-T-G-TTTT-GT-----G--G-G---GTTTTTT-T
gi|48387 : TTCAATCT-G-T-AA-TAAA--C-C-T--C------CA-TATGCAT-TCCAA-TT--T-C-T-G-TTTT-GC-----GC-G-G---GTTTTTT-Tattttta
gi|48388 : TTCAATCT-G-T-AA-TAAA--C-C-T--C------CA-TATGCAT-TTCAA-TT--T-C-T-G-TTTT-GT-----G--G-G---TTTTTTTATTTA-attta
gi|48399 : TTCAATCT-G-T-AAATAAA--C-C-T--C------CAAT-------TTCAA-TT--T-CCT-G-TTTT-GC-----G--G-A--------TT-TTTA-AATTA-TATTTTTT
gi|48395 : TTCAATCT-G-T-AA-TAGA--C-C-T--C------CA-T-------TTCAA-TT--T-C-T-C-TTTT-GCGA---G--G-G---GTTTATT------ATTGT-TATTTTTT
gi|48396 : TTCAATCT-G-C-AA-TAGA--C-C-T--C------CA-T-------TTCA---T--T-C-T-G-TTTT-GC-----G--G-G---G
gi|48376 : TTTAATCT-G-T-AA-CAGA--C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G-G---GTTTCTT-TT---ATTTA-TATTTTT
gi|48380 : TTCAATCTTG-TTAA-TAAA--C---T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTG-GCGGA--G--G-G---G----TT-TTTA-ATTTA-TATTTTTT
gi|48394 : TTCAATCT-GCT-AA-TAAA--T-C-T--C------CA-T-------TTCAA-TT--T-A-T-GTTTTT-GC-----G--G-G-------TTT-TTTA---TTA-TATTTTT
gi|48401 : TTCAATCT-G-T-AA-TAAA--C-T-C--CATATG-CA-T-------TTCA--TT--T-C-T-G-TTTT-GC-----G--G-GTTTGTTTTTT-TTTA-TTT
gi|48400 : TTCAATCT-G-T-AA-TAAA--C-C-T--CCATATGCA-T-------TTCAA--T--T-C-T-G-TTTT-GCGGGGGG--G-G---GTTTTAT-TTa
gi|48397 : TTCAATCTTG-T-AA-TAAA--C-T-C--CATATG-CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GTT---GTTTTTT-TTa
gi|48392 : TTCAATCT-G-T-AA-AAAA--TAC-T--C------CA-TATGCAT-TTCAA-TTAAT-C-T-G-TTTT-GT-----G--G-G---GTTTTTT-TTatt
gi|48402 : TTCAATCT-G---AA-TAAAAAC-C-T--T------CA-TATGCA--TTCAA-TT--T-C-T-G--TTT-GC-----G--G-G-----TTTTT-TTTA-TTTattta
gi|48403 : TCAATCT-G-T-AAATAAAT-C-C-T--C------CA-TATGCA--TTCAA-TT--C-C-T-G-TTTT-GC-----G--G-C---GTTTTTT-Ta
gi|48404 : CAATCT-G-T-AA-TAAA--C-C-T--C-------A-T-------TTCA---T--T-C-T-G-TTTT-GC--------G-G---GTTTTTT------ATTTA-TAATTTTTcatt
gi|48406 : TCT-G-T-AA-CAGA--C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G-G---GTTTCTT-TT---ATTTA-TATTTTT
gi|48409 : aTCT-G-T-AA-TAAA--C-C-TTCC------CA-TATGCATTTCCAA-TT--T-C-T-G-TTTT-GC-----G--A-G---GTTTGTT-TTTGTATTTA-TA
gi|48407 : TCT-G-TTAA-TAAA--C-C-T--C------CA-T-------TCAAA-TT--C-C-TGG-TTTTGGC-----G--G-G---GTTTTT
gi|48410 : aT-G-T-AA-TAAA--C-C-T--C------CA-T-------TTCAT-TT--T-C-T-G-TTTT--C-----G--G-GTT-GTTGGTT-TTTT-ATTTA-TATGTTTT
gi|48408 : -T-AA-TAAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GCA----G--A-G---GTTTAAT-TTTA-
gi|48405 : atttcA-TAAA--C-C-T--C------CA-T-------TTCAAATT--C-C-T-G-TTTT-GC-----G--G-G---G---TTT-TTTA-ATTAA-TAATTTTTct
Alignments
lowQualScore : 2222222 1111
lowQualScore : 2 22 3 2 1 1 3 11 888888 1 7777777 3 11 1 1 1 1 2 77777 22 9999999999999999 44444 1 4444 2 1
lowQualScore : . .. . . . . . .. ...... . ....... . .. . . . . . ..... .. ................ ..... . .... . .
lowQualScore : 1 55 2 1 1 1 2 44 333333 1 2222222 2 44 1 1 1 1 1 00000 55 1111111111111111 44444 1 8888 8 7
consensus : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
Reference ( family-529 ) : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
gi|48373 : TTCAGTCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTCA-TATT-TTTT
gi|48374 : TTCAATCT-G--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---ATTTCTT------ATTTA-TATT-TTT
gi|48375 : TTTAATCT-G--T-AA-CAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTCTT-AT---ATTTA-TATT-TTTT
gi|48376 : TTTAATCT-G--T-AA-CAGA-C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G----------------G---GTTTCTT-TT---ATTTA-TATT-TTT
gi|48377 : TTCAATCT-G--T-AA-TAAA-C-C-G--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------A---GTTATTT-T----ATTTA-TATT-TTTT
gi|48378 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTGTTTT-T----ATTTG-T-TT-TTT
gi|48379 : TTCAATCT-G--TTAA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTTGGC-----GGAG----------------G---GTTTTT-------ATTTA-TATT-TTTT
gi|48380 : TTCAATCTTG--TTAA-TAAA-C---T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTG-GCGGA--G--G----------------G---G----TT-TTTA-ATTTA-TATT-TTTT
gi|48381 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G-----TTTTA-TTTA-ATTTA-TATT-TTTT
gi|48382 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G-----TTTTA-TTTA-ATTTA-TATT-TTTT
gi|48383 : TTCAATCT-G--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--TCC-T-G-TTTT-GC-----G--G----------------G------TTTT-ATTA-ATTTA-TATT-TTTT
gi|48384 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G------TTTA-TTTA-ATTTA-TATT-TTTT
gi|48385 : TTCAATCT-G--T-AA-TAAA-C-G-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GA---------------G---GTTTCTT-T----ATTTA-AATT-GTTT
gi|48386 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGTAT-TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTAT-TT
gi|48387 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGCAT-TCCAA-TT--T-C-T-G-TTTT-GC-----GC-G----------------G---GTTTTTT-T----ATTTA-a
gi|48388 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGCAT-TTCAA-TT--T-C-T-G-TTTT-GT-----G--G----------------G---TTTTTTTATTTA-
gi|48389 : TTCAATCT-G--T-AA-TAAA-T-C-T--C------CA-TATGCGT-TTTAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---G-TTTTT-TTTA-ATTT
gi|48390 : TTCA-TCT-G--T-AA-TAAA-C-CCT--C------CA-T-------TTCAA-TT--T-T-T-G-TTTT-GC-----G--G----------------A---G-TTTTT-TTTA-ATTCATTATT-TTTT
gi|48391 : TTCAATCT-G--T-AA-TAAA-T-C-T--C------CA-TATGCAATTTCAA-TT--T-C-T-G-TTTT-GT-----G--G----------------G---GTTTTTT-T----ATTTT-TA
gi|48392 : TTCAATCT-G--T-AA-AAAA-TAC-T--C------CA-TATGCAT-TTCAA-TTAAT-C-T-G-TTTT-GT-----G--G----------------G---GTTTTTT-TT---ATTTA-
gi|48393 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCA---T--T-C-T-G--TTT-GC-----G--G----------------G-----TTTTT-TTAA-ATTCA-TATT-TTTT
gi|48394 : TTCAATCT-GC-T-AA-TAAA-T-C-T--C------CA-T-------TTCAA-TT--T-A-T-GTTTTT-GC-----G--G----------------G-------TTT-TTTA---TTA-TATT-TTT
gi|48395 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-C-TTTT-GCGA---G--G----------------G---GTTTATT------ATTGT-TATT-TTTT
gi|48396 : TTCAATCT-G--C-AA-TAGA-C-C-T--C------CA-T-------TTCA---T--T-C-T-G-TTTT-GC-----G--G----------------G---G
gi|48397 : TTCAATCTTG--T-AA-TAAA-C-T-C--CATATG-CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GT---------------T---GTTTTTT-TT
gi|48398 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GGTGTGTGTGTGTGTGTG---GTTTTTT-TT----TTTATTATTATTTTatt
gi|48399 : TTCAATCT-G--T-AAATAAA-C-C-T--C------CAAT-------TTCAA-TT--T-CCT-G-TTTT-GC-----G--G----------------A--------TT-TTTA-AATTA-TATT-TTTT
gi|48400 : TTCAATCT-G--T-AA-TAAA-C-C-T--CCATATGCA-T-------TTCAA--T--T-C-T-G-TTTT-GCGGGGGG--G----------------G---GTTTTAT-TT
gi|48401 : TTCAATCT-G--T-AA-TAAA-C-T-C--CATATG-CA-T-------TTCA--TT--T-C-T-G-TTTT-GC-----G--G----------------GTTTGTTTTTT-TTT--ATTTA-a
gi|48402 : TTCAATCT-GAAT-AA--AAA-C-C-T--T------CA-TATGCA--TTCAA-TT--T-C-T-G--TTT-GC--------G----------------G---GTTTTTT-TT---ATTTA-
gi|48403 : TCAATCT-G--T-AAATAAATC-C-T--C------CA-TATGCA--TTCAA-TT--C-C-T-G-TTTT-GC-----G--G----------------C---GTTTTTT-T
gi|48404 : CAATCT-G--T-AA-TAAA-C-C-T--C-------A-T-------TTCA---T--T-C-T-G-TTTT-GC--------G----------------G---GTTTTTT------ATTTA-TAAT-TTTTcatt
gi|48405 : CAATCT-C-----A-TAAA-C-C-T--C------CA-T-------TTCAAATT--C-C-T-G-TTTT-GC-----G--G----------------G---G---TTT-TTTA-ATTAA-TAAT-TTTT
gi|48406 : ATCT-G--T-AA-CAGA-C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G----------------G---GTTTCTT-TT---ATTTA-TATT-TTT
gi|48407 : ATCT-G--TTAA-TAAA-C-C-T--C------CA-T-------TCAAA-TT--C-C-TGG-TTTTGGC-----G--G----------------G---GTTTTT
gi|48408 : ATTT-C--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GCA----G--A----------------G---GTTTAAT-TTTA-
gi|48409 : TCT-G--T-AA-TAAA-C-C-TTCC------CA-TATGCATTTCCAA-TT--T-C-T-G-TTTT-GC-----G--A----------------G---GTTTGTT-TTTGTATTTA-TAct
gi|48410 : T-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAT-TT--T-C-T-G-TTTT--C-----G--G----------------GTT-GTTGGTT-TTTT-ATTTA-TATG-TTTT
Alignments
lowQualScore : 2222222 1111
lowQualScore : 2 22 3 2 1 1 3 11 888888 1 7777777 3 11 1 1 1 1 2 77777 22 9999999999999999 44444 1 4444 2 1
lowQualScore : . .. . . . . . .. ...... . ....... . .. . . . . . ..... .. ................ ..... . .... . .
lowQualScore : 1 55 2 1 1 1 2 44 333333 1 2222222 2 44 1 1 1 1 1 00000 55 1111111111111111 44444 1 8888 8 7
consensus : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
Reference ( family-529 ) : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
gi|48373 : TTCAGTCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTCA-TATT-TTTT
gi|48374 : TTCAATCT-G--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---ATTTCTT------ATTTA-TATT-TTT
gi|48375 : TTTAATCT-G--T-AA-CAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTCTT-AT---ATTTA-TATT-TTTT
gi|48376 : TTTAATCT-G--T-AA-CAGA-C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G----------------G---GTTTCTT-TT---ATTTA-TATT-TTT
gi|48377 : TTCAATCT-G--T-AA-TAAA-C-C-G--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------A---GTTATTT-T----ATTTA-TATT-TTTT
gi|48378 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTGTTTT-T----ATTTG-T-TT-TTT
gi|48379 : TTCAATCT-G--TTAA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTTGGC-----GGAG----------------G---GTTTTT-------ATTTA-TATT-TTTT
gi|48380 : TTCAATCTTG--TTAA-TAAA-C---T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTG-GCGGA--G--G----------------G---G----TT-TTTA-ATTTA-TATT-TTTT
gi|48381 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G-----TTTTA-TTTA-ATTTA-TATT-TTTT
gi|48382 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G-----TTTTA-TTTA-ATTTA-TATT-TTTT
gi|48383 : TTCAATCT-G--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--TCC-T-G-TTTT-GC-----G--G----------------G------TTTT-ATTA-ATTTA-TATT-TTTT
gi|48384 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G------TTTA-TTTA-ATTTA-TATT-TTTT
gi|48385 : TTCAATCT-G--T-AA-TAAA-C-G-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GA---------------G---GTTTCTT-T----ATTTA-AATT-GTTT
gi|48386 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGTAT-TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTAT-TT
gi|48387 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGCAT-TCCAA-TT--T-C-T-G-TTTT-GC-----GC-G----------------G---GTTTTTT-T----ATTTA-a
gi|48388 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGCAT-TTCAA-TT--T-C-T-G-TTTT-GT-----G--G----------------G---TTTTTTTATTTA-
gi|48389 : TTCAATCT-G--T-AA-TAAA-T-C-T--C------CA-TATGCGT-TTTAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---G-TTTTT-TTTA-ATTT
gi|48390 : TTCA-TCT-G--T-AA-TAAA-C-CCT--C------CA-T-------TTCAA-TT--T-T-T-G-TTTT-GC-----G--G----------------A---G-TTTTT-TTTA-ATTCATTATT-TTTT
gi|48391 : TTCAATCT-G--T-AA-TAAA-T-C-T--C------CA-TATGCAATTTCAA-TT--T-C-T-G-TTTT-GT-----G--G----------------G---GTTTTTT-T----ATTTT-TA
gi|48392 : TTCAATCT-G--T-AA-AAAA-TAC-T--C------CA-TATGCAT-TTCAA-TTAAT-C-T-G-TTTT-GT-----G--G----------------G---GTTTTTT-TT---ATTTA-
gi|48393 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCA---T--T-C-T-G--TTT-GC-----G--G----------------G-----TTTTT-TTAA-ATTCA-TATT-TTTT
gi|48394 : TTCAATCT-GC-T-AA-TAAA-T-C-T--C------CA-T-------TTCAA-TT--T-A-T-GTTTTT-GC-----G--G----------------G-------TTT-TTTA---TTA-TATT-TTT
gi|48395 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-C-TTTT-GCGA---G--G----------------G---GTTTATT------ATTGT-TATT-TTTT
gi|48396 : TTCAATCT-G--C-AA-TAGA-C-C-T--C------CA-T-------TTCA---T--T-C-T-G-TTTT-GC-----G--G----------------G---G
gi|48397 : TTCAATCTTG--T-AA-TAAA-C-T-C--CATATG-CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GT---------------T---GTTTTTT-TT
gi|48398 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GGTGTGTGTGTGTGTGTG---GTTTTTT-TT----TTTATTATTATTTTatt
gi|48399 : TTCAATCT-G--T-AAATAAA-C-C-T--C------CAAT-------TTCAA-TT--T-CCT-G-TTTT-GC-----G--G----------------A--------TT-TTTA-AATTA-TATT-TTTT
gi|48400 : TTCAATCT-G--T-AA-TAAA-C-C-T--CCATATGCA-T-------TTCAA--T--T-C-T-G-TTTT-GCGGGGGG--G----------------G---GTTTTAT-TT
gi|48401 : TTCAATCT-G--T-AA-TAAA-C-T-C--CATATG-CA-T-------TTCA--TT--T-C-T-G-TTTT-GC-----G--G----------------GTTTGTTTTTT-TTT--ATTTA-a
gi|48402 : TTCAATCT-GAAT-AA--AAA-C-C-T--T------CA-TATGCA--TTCAA-TT--T-C-T-G--TTT-GC--------G----------------G---GTTTTTT-TT---ATTTA-
gi|48403 : TCAATCT-G--T-AAATAAATC-C-T--C------CA-TATGCA--TTCAA-TT--C-C-T-G-TTTT-GC-----G--G----------------C---GTTTTTT-T
gi|48404 : CAATCT-G--T-AA-TAAA-C-C-T--C-------A-T-------TTCA---T--T-C-T-G-TTTT-GC--------G----------------G---GTTTTTT------ATTTA-TAAT-TTTTcatt
gi|48405 : CAATCT-C-----A-TAAA-C-C-T--C------CA-T-------TTCAAATT--C-C-T-G-TTTT-GC-----G--G----------------G---G---TTT-TTTA-ATTAA-TAAT-TTTT
gi|48406 : ATCT-G--T-AA-CAGA-C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G----------------G---GTTTCTT-TT---ATTTA-TATT-TTT
gi|48407 : ATCT-G--TTAA-TAAA-C-C-T--C------CA-T-------TCAAA-TT--C-C-TGG-TTTTGGC-----G--G----------------G---GTTTTT
gi|48408 : ATTT-C--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GCA----G--A----------------G---GTTTAAT-TTTA-
gi|48409 : TCT-G--T-AA-TAAA-C-C-TTCC------CA-TATGCATTTCCAA-TT--T-C-T-G-TTTT-GC-----G--A----------------G---GTTTGTT-TTTGTATTTA-TAct
gi|48410 : T-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAT-TT--T-C-T-G-TTTT--C-----G--G----------------GTT-GTTGGTT-TTTT-ATTTA-TATG-TTTT
blockSeqs : T AA T A T A C TC CATATG A ATGCAAT A AA C C G T G GGGGG GA GTGTGTGTGTGTGTGT TTTGT A TTGT T A
blockSeqs : T C T A . . C . ATATG . ATGCATT A . . . . . G GGA C A TTGT . TTA T .
blockSeqs : . . T . . . C . ATATG . ATGTAT A . . . . . . GA . T AT . TTA . .
blockSeqs : . . . . . . . . . . ATGCAT . . . . . . . A . . GT . TTA . .
blockSeqs : . . . . . . . . . . ATGCAT . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . ATGCGT . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . ATGCAT . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . ATGCA . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . ATGCA . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . TAA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . TT . TTA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . TTA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . TTT . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . TT . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GT . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
finalCons : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
Alignments
lowQualScore : 2222222 1111
lowQualScore : 2 22 3 2 1 1 3 11 888888 1 7777777 3 11 1 1 1 1 2 77777 22 9999999999999999 44444 1 4444 2 1
lowQualScore : . .. . . . . . .. ...... . ....... . .. . . . . . ..... .. ................ ..... . .... . .
lowQualScore : 1 55 2 1 1 1 2 44 333333 1 2222222 2 44 1 1 1 1 1 00000 55 1111111111111111 44444 1 8888 8 7
consensus : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
Reference ( family-529 ) : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTTA-TATT-TTTT
gi|48373 : TTCAGTCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTTT-TTTA-ATTCA-TATT-TTTT
gi|48374 : TTCAATCT-G--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---ATTTCTT------ATTTA-TATT-TTT
gi|48375 : TTTAATCT-G--T-AA-CAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTCTT-AT---ATTTA-TATT-TTTT
gi|48376 : TTTAATCT-G--T-AA-CAGA-C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G----------------G---GTTTCTT-TT---ATTTA-TATT-TTT
gi|48377 : TTCAATCT-G--T-AA-TAAA-C-C-G--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------A---GTTATTT-T----ATTTA-TATT-TTTT
gi|48378 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTGTTTT-T----ATTTG-T-TT-TTT
gi|48379 : TTCAATCT-G--TTAA-TAAA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTTGGC-----GGAG----------------G---GTTTTT-------ATTTA-TATT-TTTT
gi|48380 : TTCAATCTTG--TTAA-TAAA-C---T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTG-GCGGA--G--G----------------G---G----TT-TTTA-ATTTA-TATT-TTTT
gi|48381 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G-----TTTTA-TTTA-ATTTA-TATT-TTTT
gi|48382 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G-----TTTTA-TTTA-ATTTA-TATT-TTTT
gi|48383 : TTCAATCT-G--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--TCC-T-G-TTTT-GC-----G--G----------------G------TTTT-ATTA-ATTTA-TATT-TTTT
gi|48384 : TTCAATCT-G--T-AA-TAA--C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G------TTTA-TTTA-ATTTA-TATT-TTTT
gi|48385 : TTCAATCT-G--T-AA-TAAA-C-G-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GA---------------G---GTTTCTT-T----ATTTA-AATT-GTTT
gi|48386 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGTAT-TTCAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---GTTTTAT-TT
gi|48387 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGCAT-TCCAA-TT--T-C-T-G-TTTT-GC-----GC-G----------------G---GTTTTTT-T----ATTTA-a
gi|48388 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-TATGCAT-TTCAA-TT--T-C-T-G-TTTT-GT-----G--G----------------G---TTTTTTTATTTA-
gi|48389 : TTCAATCT-G--T-AA-TAAA-T-C-T--C------CA-TATGCGT-TTTAA-TT--T-C-T-G-TTTT-GC-----G--G----------------G---G-TTTTT-TTTA-ATTT
gi|48390 : TTCA-TCT-G--T-AA-TAAA-C-CCT--C------CA-T-------TTCAA-TT--T-T-T-G-TTTT-GC-----G--G----------------A---G-TTTTT-TTTA-ATTCATTATT-TTTT
gi|48391 : TTCAATCT-G--T-AA-TAAA-T-C-T--C------CA-TATGCAATTTCAA-TT--T-C-T-G-TTTT-GT-----G--G----------------G---GTTTTTT-T----ATTTT-TA
gi|48392 : TTCAATCT-G--T-AA-AAAA-TAC-T--C------CA-TATGCAT-TTCAA-TTAAT-C-T-G-TTTT-GT-----G--G----------------G---GTTTTTT-TT---ATTTA-
gi|48393 : TTCAATCT-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCA---T--T-C-T-G--TTT-GC-----G--G----------------G-----TTTTT-TTAA-ATTCA-TATT-TTTT
gi|48394 : TTCAATCT-GC-T-AA-TAAA-T-C-T--C------CA-T-------TTCAA-TT--T-A-T-GTTTTT-GC-----G--G----------------G-------TTT-TTTA---TTA-TATT-TTT
gi|48395 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-C-TTTT-GCGA---G--G----------------G---GTTTATT------ATTGT-TATT-TTTT
gi|48396 : TTCAATCT-G--C-AA-TAGA-C-C-T--C------CA-T-------TTCA---T--T-C-T-G-TTTT-GC-----G--G----------------G---G
gi|48397 : TTCAATCTTG--T-AA-TAAA-C-T-C--CATATG-CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GT---------------T---GTTTTTT-TT
gi|48398 : TTCAATCT-G--T-AA-TAGA-C-C-T--C------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GC-----G--GGTGTGTGTGTGTGTGTG---GTTTTTT-TT----TTTATTATTATTTTatt
gi|48399 : TTCAATCT-G--T-AAATAAA-C-C-T--C------CAAT-------TTCAA-TT--T-CCT-G-TTTT-GC-----G--G----------------A--------TT-TTTA-AATTA-TATT-TTTT
gi|48400 : TTCAATCT-G--T-AA-TAAA-C-C-T--CCATATGCA-T-------TTCAA--T--T-C-T-G-TTTT-GCGGGGGG--G----------------G---GTTTTAT-TT
gi|48401 : TTCAATCT-G--T-AA-TAAA-C-T-C--CATATG-CA-T-------TTCA--TT--T-C-T-G-TTTT-GC-----G--G----------------GTTTGTTTTTT-TTT--ATTTA-a
gi|48402 : TTCAATCT-GAAT-AA--AAA-C-C-T--T------CA-TATGCA--TTCAA-TT--T-C-T-G--TTT-GC--------G----------------G---GTTTTTT-TT---ATTTA-
gi|48403 : TCAATCT-G--T-AAATAAATC-C-T--C------CA-TATGCA--TTCAA-TT--C-C-T-G-TTTT-GC-----G--G----------------C---GTTTTTT-T
gi|48404 : CAATCT-G--T-AA-TAAA-C-C-T--C-------A-T-------TTCA---T--T-C-T-G-TTTT-GC--------G----------------G---GTTTTTT------ATTTA-TAAT-TTTTcatt
gi|48405 : CAATCT-C-----A-TAAA-C-C-T--C------CA-T-------TTCAAATT--C-C-T-G-TTTT-GC-----G--G----------------G---G---TTT-TTTA-ATTAA-TAAT-TTTT
gi|48406 : ATCT-G--T-AA-CAGA-C-CCT--C------CA-T-------TTCAAATT--T-C-T-G-TTTT-GC--------G----------------G---GTTTCTT-TT---ATTTA-TATT-TTT
gi|48407 : ATCT-G--TTAA-TAAA-C-C-T--C------CA-T-------TCAAA-TT--C-C-TGG-TTTTGGC-----G--G----------------G---GTTTTT
gi|48408 : ATTT-C--T-AA-TAAA-C-C-T--T------CA-T-------TTCAA-TT--T-C-T-G-TTTT-GCA----G--A----------------G---GTTTAAT-TTTA-
gi|48409 : TCT-G--T-AA-TAAA-C-C-TTCC------CA-TATGCATTTCCAA-TT--T-C-T-G-TTTT-GC-----G--A----------------G---GTTTGTT-TTTGTATTTA-TAct
gi|48410 : T-G--T-AA-TAAA-C-C-T--C------CA-T-------TTCAT-TT--T-C-T-G-TTTT--C-----G--G----------------GTT-GTTGGTT-TTTT-ATTTA-TATG-TTTT