lowQualScore : 1 2 1 1 1 1 2 2 1 2 1 2 88 222 44444444 1 2 55555555 2 1 333 1 1 2 11 222 1 1 1 1
lowQualScore : . . . . . . . . . . . . .. ... ........ . . ........ . . ... . . . .. ... . . . .
lowQualScore : 2 4 2 2 2 1 3 2 1 1 1 1 44 888 77777777 0 1 11111111 1 0 222 0 0 1 44 888 0 0 1 2
consensus : TAATCCG-A-GA-T-T-CCT-C-T-G-AC-T-C-T-TACCC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GGGGGAG
Reference ( gi|68041 ) : TAATCCG-A-GA-T-T-CCT-C-T-G-AC-T-C-T-AACCC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68044 : TAATCCG-A-GA-T-TTCCT-C-T-G-AC-T-C-T-AACTC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GGGGGA
gi|68043 : TAATCCG-A-GA-T-T-CCT-C-T-G-AC-T-C-T-TACCC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-A-TGC-AGGGGAG
gi|68047 : TAATCCG-A-GA-T-T-CCT-C-T-G-AC-T-C-T-AACCC---CCA--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GG
gi|68046 : TAATCCG-A-GA-T-T-CCT-C-T-G-AC-T-C-T-AACCC---CCG--------C---T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGT-GGGG
gi|68051 : TAATCCG-A-GA-TCT-CCT-C-TTG-AC-T-C-T-AACCC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GGG
gi|68045 : TAATC-G-A-GA-T-T-CCT-C-T-G-AC-T-C-T-A-CCC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-GTTGC-GGGGGAG
gi|68054 : TAATCCG-AAGA-T-T-CCT-C-C-G-AC-T-C-T-AACCC---CCG--------C-TGT--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-CAGGGAG
gi|68057 : TAATC-G-A-GA-T-T-CCT-C-T-G-AC-T-C-T-AACCC---C-G--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-
gi|68048 : TAATCCG-A-GA-T-T-CCC-C-T-G-GC-T-C-T-TACCC---CTA--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-GT-G-TGT-GGGAGAG
gi|68050 : TAATCCA-A-GA-T-T-CCT-G-T-G-AC-T-C-T-TACTC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68049 : TAATCCA-A-GA-T-T-CCT-G-T-G-AC-T-C-T-TACTC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68052 : TAATTCG-A-GAAT-T-TCT-C-C-G-AC-T-C-T-TACCC---CCG--------C-T-T--------T-T-ATAT---T-A-TAG--A---C-AC-G-TGC-GGGGGAG
gi|68042 : TAATCCG-A------------C-T-G-AC-T-C-T-AACCC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C--T-G-TGC-GGGGGAG
gi|68055 : TATTCCA-A-GA-T-T-CCT-C-T-A-AC-T-C-T-TACCC---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AA-G-TGC-
gi|68058 : TAATTCG-A-GA-T-T-CTT-C-CCA-AC-T-C-T-TATCC-----G--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-AGGGGAG
gi|68056 : TAATCCG-A-GA-T-T-TCT-C-T-G-AC-T-C-T-TATCC---CTG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-
gi|68060 : TAATCTG-A-GA-T-T-CCT-T-C-A-AC-T-C-T-TAACC---CCG--------C-T-T--------T-T-ATTT---T-G-T-G--A---T-CT-G-TGC-AGGGGA
gi|68061 : TAATCCG-A-GA-T-T-CCT-C-C-G-AT-C-T-T-CATCC---CCG--------T-T-T--------TAT-ATATATGT-G-T-G--A---C-AA-G-TGC-GGGGGA
gi|68062 : TAATTTG-A-GA-T-T-CCT-C-T-G-AC-T-C-T-TACCC---CCG--------C-T-A--------T-T-ATAT---T-G-T-G------C-AT-
gi|68053 : TAATCCA-A-GA-T-T-CCT-C-T-G-AC-T-C-T-TGTGC---CCG--------C-TATTAATAGTAT-T-ATAT---T-G-T-G--A---C-AT-G-TGG-TGGAGAG
gi|68069 : TAATCGA-G-GA-T-T-CCT-C-T-GAAC-T-C-T-AAACC---CCG--------C---T--------T-T-ATAT---T-G-T-G--A---C--T-G-TGC-
gi|68063 : TAACCTG-A-TA-T-T-CCT-C-G-G-AC-T-C-T-TGCCT---CTG--------T-G-T--------T-T-ATAT---C-G-T-G--G---C-AT-G-TGC-AGGGAAG
gi|68065 : TAATTTG-A-GA-T-T-TCT-C-A-G-AC-T-C-T-TACTT---AAATTTTTTATC-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68067 : TAATCCA-A-TA-T-T-CCT-A-C-G-AC-T-C-TTAACCC---CCA--------C-A-T--------T-T-ACAT---T-G-T-G--GGGTC-AT-G-TGT-ATGGGAG
gi|68066 : TAATCTG-A-GA-T-T-CTT-C-T-G-AC-T-C-T-TACCC---CTG--------C-T-T--------T-T-GAAT---T--------A---C-AT-G-T
gi|68064 : TAGTTCG-A-GA-T-A-TCT-C-T-G-AC-TGT-T-TACCT---CTG--------C-T-T--------T-C-ATAT---T-G-T-G--G---C-AT-G-TG
gi|68068 : TAATTGA-A-GA-T-T-CCT-T-G-G-AT-T-C-T-CCCAC---CCG--------C-C-T--------C-T-ATAT---T-G-T-T--T---C-AT-G-TGCAGGGGGAG
gi|68059 : TAATTCG-A-GA-T-T-CTTCC-C-A-AC-T-CTT-AA--T---CCGT-------C-T-T--------T-A-ATAT---T-G-T-G--AT--C-ATCG-TGC-AGGGGAG
gi|68071 : AATCCG-A-GC-T-T-CCT-C-T-G-AC-T-T-T-TATCT---CCG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TAT-TGGGG
gi|68070 : AATCCGGA-GA-T-T-CCT-CGT-G-AC-T-C-T-AACCCGCTCCG--------C-T-T--------TCT-ATAT---T-G-T-G--A---C-AT-G-
gi|68072 : ATCCG-ACGA-T-T-CCT-CCT-G-ACAT-C-T-AACCC---CCG--------C-T-T--------T-TAATAT---T-G-TGG--A---C-AT-G-TGC-GGGGGAG
gi|68074 : TCC--A-GA-T-T-CCT-C-G-G-AT-T-CCT-TACCC---CCG--------C-T-T--------T-T-ATAT---T-GTT-G--A---C-AC-G-TGC-GGGGGAG
gi|68073 : TCCG-A-GA-C-A-TCC-C-T-G-ACGT-C-T-AACCC---C-G--------C-T-T--------T-T-ATATTA-T-G-T-G--A---CAAT-G-T-C-GGGGGA
gi|68075 : CCG-G-AA-T-T-CCT-C-T-G-AC-T-C-T-TATCC---CCT--------CTT-T--------T-T-ATAT---T-C-C-G--A---C-AT-G-TGT-
gi|68076 : CT-C-T-G-AC-T-C-T-TACCC---CCG--------C-T-T--------T-C-ATGT---T-G-T-G--G---T-AT-G-TGT-GCAGGA
gi|68077 : -G-AA-T-C-T-TACCC---CTG--------C-T-TAA------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68078 : -AT-T-C-T-TACCC---CTG--------C-T-T--------T-T-ATAT---TTG-T-G--A---C-AT-G-TGC-GGGGGA
gi|68079 : -T-C-T-TACCCA--CTG--------C-T-T--------T-T-ATAT---T-G-T-GAAA---C-CT-G-TGC-GGGGGAG
gi|68080 : ACCC---CTG--------C-T-T--------T-T-ATAT---T-G-T-G--A---C-AT-G-TGC-GGGG
Alignments
lowQualScore : 1 2 1 1 1 2 3 1 1 1 1 22 222 33333333 1 2 55555555 2 1 1 333 1 1 22 222 1 1 1 1
lowQualScore : . . . . . . . . . . . .. ... ........ . . ........ . . . ... . . .. ... . . . .
lowQualScore : 1 3 1 1 1 2 2 1 0 0 0 33 888 66666666 0 0 00000000 0 0 0 111 0 0 44 888 0 0 1 1
consensus : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
Reference ( family-516 ) : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68041 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68042 : TAATCCG-A-----------C-T-G-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C--T-G-TGC-GGGGGAG
gi|68043 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-A-TGC-AGGGGAG
gi|68044 : TAATCCG-A-GA-T-TTCCTC-T-G-AC-T-C-TA-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGA
gi|68045 : TAATC-G-A-GA-T-T-CCTC-T-G-AC-T-C-T--ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-GTTGC-GGGGGAG
gi|68046 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCG--------C---T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGT-GGGG
gi|68047 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCA--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GG
gi|68048 : TAATCCG-A-GA-T-T-CCCC-T-G-GC-T-C-TT-ACCC---CTA--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-GT-G-TGT-GGGAGAG
gi|68049 : TAATCCA-A-GA-T-T-CCTG-T-G-AC-T-C-TT-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68050 : TAATCCA-A-GA-T-T-CCTG-T-G-AC-T-C-TT-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68051 : TAATCCG-A-GA-TCT-CCTC-TTG-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGG
gi|68052 : TAATTCG-A-GAAT-T-TCTC-C-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TA-TAG--A---C-AC-G-TGC-GGGGGAG
gi|68053 : TAATCCA-A-GA-T-T-CCTC-T-G-AC-T-C-TT-GTGC---CCG--------C-TATTAATAGTAT-TA-TA-T---TG-T-G--A---C-AT-G-TGG-TGGAGAG
gi|68054 : TAATCCG-AAGA-T-T-CCTC-C-G-AC-T-C-TA-ACCC---CCG--------C-TGT--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-CAGGGAG
gi|68055 : TATTCCA-A-GA-T-T-CCTC-T-A-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AA-G-TGC-
gi|68056 : TAATCCG-A-GA-T-T-TCTC-T-G-AC-T-C-TT-ATCC---CTG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-
gi|68057 : TAATC-G-A-GA-T-T-CCTC-T-G-AC-T-C-T--AACC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-
gi|68058 : TAATTCG-A-GA-T-T-CTTC-CCA-AC-T-C-TT-ATCC-----G--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-AGGGGAG
gi|68059 : TAATTCG-A-GA-T-T-CTTC-CCA-AC-T-C-TT-AATC---CGT--------C-T-T--------T-AA-TA-T---TG-T-G--AT--C-ATCG-TGC-AGGGGAG
gi|68060 : TAATCTG-A-GA-T-T-CCTT-C-A-AC-T-C-TT-AACC---CCG--------C-T-T--------T-TA-TT-T---TG-T-G--A---T-CT-G-TGC-AGGGGA
gi|68061 : TAATCCG-A-GA-T-T-CCTC-C-G-A--T-C-TTCATCC---CCG--------T-T-T--------TATA-TA-TATGTG-T-G--A---C-AA-G-TGC-GGGGGA
gi|68062 : TAATTTG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-A--------T-TA-TA-T---TG-T-G------C-AT-
gi|68063 : TAACCTG-A-TA-T-T-CCTC-G-G-AC-T-C-TT-GCCT---CTG--------T-G-T--------T-TA-TA-T---CG-T-G--G---C-AT-G-TGC-AGGGAAG
gi|68064 : TAGTTCG-A-GA-T-A-TCTC-T-G-AC-TGT-TT-ACCT---CTG--------C-T-T--------T-CA-TA-T---TG-T-G--G---C-AT-G-TG
gi|68065 : TAATTTG-A-GA-T-T-TCTC-A-G-AC-T-C-TT-ACTT---AAATTTTTTATC-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68066 : TAATCTG-A-GA-T-T-CTTC-T-G-AC-T-C-TT-ACCC---CTG--------C-T-T--------T-TG-AA-T---T-------A---C-AT-G-T
gi|68067 : TAATCCA-A-TA-T-T-CCTA-C-G-AC-T-C-TTAACCC---CCA--------C-A-T--------T-TA-CA-T---TG-T-G--GGGTC-AT-G-TGT-ATGGGAG
gi|68068 : TAATTGA-A-GA-T-T-CCTT-G-G-AT-T-C-TC-CCAC---CCG--------C-C-T--------C-TA-TA-T---TG-T-T--T---C-AT-G-TGCAGGGGGAG
gi|68069 : TAATCGA-G-GA-T-T-CCTC-T-GAAC-T-C-TA-AACC---CCG--------C---T--------T-TA-TA-T---TG-T-G--A---C--T-G-TGC-
gi|68070 : AATCCGGA-GA-T-T-CCTCGT-G-AC-T-C-TA-ACCCGCTCCG--------C-T-T--------TCTA-TA-T---TG-T-G--A---C-AT-G-
gi|68071 : AATCCG-A-GC-T-T-CCTC-T-G-AC-T-T-TT-ATCT---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TAT-TGGGG
gi|68072 : ATCCG-ACGA-T-T-CCTCCT-G-ACAT-C-TA-ACCC---CCG--------C-T-T--------T-TAATA-T---TG-T-GG-A---C-AT-G-TGC-GGGGGAG
gi|68073 : TCCG-A-GA-C-A-TCCC-T-G-AC-G-T-CT-AACC---CCG--------C-T-T--------T-TA-TA-TTA-TG-T-G--A---CAAT-G-T-C-GGGGGA
gi|68074 : TCC--A-GA-T-T-CCTC-G-G-AT-T-CCTT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TGTT-G--A---C-AC-G-TGC-GGGGGAG
gi|68075 : CCG-G-AA-T-T-CCTC-T-G-AC-T-C-TT-ATCC---CCT--------CTT-T--------T-TA-TA-T---TC-C-G--A---C-AT-G-TGT-
gi|68076 : CTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-CA-TG-T---TG-T-G--G---T-AT-G-TGT-GCAGGA
gi|68077 : -G-AA-T-C-TT-ACCC---CTG--------C-T-TAA------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68078 : -AT-T-C-TT-ACCC---CTG--------C-T-T--------T-TA-TATT---TG-T-G--A---C-AT-G-TGC-GGGGGA
gi|68079 : -T-C-TT-ACCCA--CTG--------C-T-T--------T-TA-TA-T---TG-T-GAAA---C-CT-G-TGC-GGGGGAG
gi|68080 : T-ACCC---CTG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGG
Alignments
lowQualScore : 1 2 1 1 1 2 3 1 1 1 1 22 222 33333333 1 2 55555555 2 1 1 333 1 1 22 222 1 1 1 1
lowQualScore : . . . . . . . . . . . .. ... ........ . . ........ . . . ... . . .. ... . . . .
lowQualScore : 1 3 1 1 1 2 2 1 0 0 0 33 888 66666666 0 0 00000000 0 0 0 111 0 0 44 888 0 0 1 1
consensus : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
Reference ( family-516 ) : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68041 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68042 : TAATCCG-A-----------C-T-G-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C--T-G-TGC-GGGGGAG
gi|68043 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-A-TGC-AGGGGAG
gi|68044 : TAATCCG-A-GA-T-TTCCTC-T-G-AC-T-C-TA-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGA
gi|68045 : TAATC-G-A-GA-T-T-CCTC-T-G-AC-T-C-T--ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-GTTGC-GGGGGAG
gi|68046 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCG--------C---T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGT-GGGG
gi|68047 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCA--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GG
gi|68048 : TAATCCG-A-GA-T-T-CCCC-T-G-GC-T-C-TT-ACCC---CTA--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-GT-G-TGT-GGGAGAG
gi|68049 : TAATCCA-A-GA-T-T-CCTG-T-G-AC-T-C-TT-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68050 : TAATCCA-A-GA-T-T-CCTG-T-G-AC-T-C-TT-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68051 : TAATCCG-A-GA-TCT-CCTC-TTG-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGG
gi|68052 : TAATTCG-A-GAAT-T-TCTC-C-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TA-TAG--A---C-AC-G-TGC-GGGGGAG
gi|68053 : TAATCCA-A-GA-T-T-CCTC-T-G-AC-T-C-TT-GTGC---CCG--------C-TATTAATAGTAT-TA-TA-T---TG-T-G--A---C-AT-G-TGG-TGGAGAG
gi|68054 : TAATCCG-AAGA-T-T-CCTC-C-G-AC-T-C-TA-ACCC---CCG--------C-TGT--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-CAGGGAG
gi|68055 : TATTCCA-A-GA-T-T-CCTC-T-A-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AA-G-TGC-
gi|68056 : TAATCCG-A-GA-T-T-TCTC-T-G-AC-T-C-TT-ATCC---CTG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-
gi|68057 : TAATC-G-A-GA-T-T-CCTC-T-G-AC-T-C-T--AACC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-
gi|68058 : TAATTCG-A-GA-T-T-CTTC-CCA-AC-T-C-TT-ATCC-----G--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-AGGGGAG
gi|68059 : TAATTCG-A-GA-T-T-CTTC-CCA-AC-T-C-TT-AATC---CGT--------C-T-T--------T-AA-TA-T---TG-T-G--AT--C-ATCG-TGC-AGGGGAG
gi|68060 : TAATCTG-A-GA-T-T-CCTT-C-A-AC-T-C-TT-AACC---CCG--------C-T-T--------T-TA-TT-T---TG-T-G--A---T-CT-G-TGC-AGGGGA
gi|68061 : TAATCCG-A-GA-T-T-CCTC-C-G-A--T-C-TTCATCC---CCG--------T-T-T--------TATA-TA-TATGTG-T-G--A---C-AA-G-TGC-GGGGGA
gi|68062 : TAATTTG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-A--------T-TA-TA-T---TG-T-G------C-AT-
gi|68063 : TAACCTG-A-TA-T-T-CCTC-G-G-AC-T-C-TT-GCCT---CTG--------T-G-T--------T-TA-TA-T---CG-T-G--G---C-AT-G-TGC-AGGGAAG
gi|68064 : TAGTTCG-A-GA-T-A-TCTC-T-G-AC-TGT-TT-ACCT---CTG--------C-T-T--------T-CA-TA-T---TG-T-G--G---C-AT-G-TG
gi|68065 : TAATTTG-A-GA-T-T-TCTC-A-G-AC-T-C-TT-ACTT---AAATTTTTTATC-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68066 : TAATCTG-A-GA-T-T-CTTC-T-G-AC-T-C-TT-ACCC---CTG--------C-T-T--------T-TG-AA-T---T-------A---C-AT-G-T
gi|68067 : TAATCCA-A-TA-T-T-CCTA-C-G-AC-T-C-TTAACCC---CCA--------C-A-T--------T-TA-CA-T---TG-T-G--GGGTC-AT-G-TGT-ATGGGAG
gi|68068 : TAATTGA-A-GA-T-T-CCTT-G-G-AT-T-C-TC-CCAC---CCG--------C-C-T--------C-TA-TA-T---TG-T-T--T---C-AT-G-TGCAGGGGGAG
gi|68069 : TAATCGA-G-GA-T-T-CCTC-T-GAAC-T-C-TA-AACC---CCG--------C---T--------T-TA-TA-T---TG-T-G--A---C--T-G-TGC-
gi|68070 : AATCCGGA-GA-T-T-CCTCGT-G-AC-T-C-TA-ACCCGCTCCG--------C-T-T--------TCTA-TA-T---TG-T-G--A---C-AT-G-
gi|68071 : AATCCG-A-GC-T-T-CCTC-T-G-AC-T-T-TT-ATCT---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TAT-TGGGG
gi|68072 : ATCCG-ACGA-T-T-CCTCCT-G-ACAT-C-TA-ACCC---CCG--------C-T-T--------T-TAATA-T---TG-T-GG-A---C-AT-G-TGC-GGGGGAG
gi|68073 : TCCG-A-GA-C-A-TCCC-T-G-AC-G-T-CT-AACC---CCG--------C-T-T--------T-TA-TA-TTA-TG-T-G--A---CAAT-G-T-C-GGGGGA
gi|68074 : TCC--A-GA-T-T-CCTC-G-G-AT-T-CCTT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TGTT-G--A---C-AC-G-TGC-GGGGGAG
gi|68075 : CCG-G-AA-T-T-CCTC-T-G-AC-T-C-TT-ATCC---CCT--------CTT-T--------T-TA-TA-T---TC-C-G--A---C-AT-G-TGT-
gi|68076 : CTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-CA-TG-T---TG-T-G--G---T-AT-G-TGT-GCAGGA
gi|68077 : -G-AA-T-C-TT-ACCC---CTG--------C-T-TAA------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68078 : -AT-T-C-TT-ACCC---CTG--------C-T-T--------T-TA-TATT---TG-T-G--A---C-AT-G-TGC-GGGGGA
gi|68079 : -T-C-TT-ACCCA--CTG--------C-T-T--------T-TA-TA-T---TG-T-GAAA---C-CT-G-TGC-GGGGGAG
gi|68080 : T-ACCC---CTG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGG
blockSeqs : G A A C T G T A A G C TC GCT TTTTTTAT T A TAATAGTA A A T ATG T A AA GGT A C T A
blockSeqs : . C . . . C C . . . . TA A . . G AA C . . TA . . G T . . . .
blockSeqs : . . . . . . C . . . . A . . . . . . . . . . . . . . . . .
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blockSeqs : . . . . . . . . . . . C . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . . . . . . .
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blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
finalCons : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
Alignments
lowQualScore : 1 2 1 1 1 2 3 1 1 1 1 22 222 33333333 1 2 55555555 2 1 1 333 1 1 22 222 1 1 1 1
lowQualScore : . . . . . . . . . . . .. ... ........ . . ........ . . . ... . . .. ... . . . .
lowQualScore : 1 3 1 1 1 2 2 1 0 0 0 33 888 66666666 0 0 00000000 0 0 0 111 0 0 44 888 0 0 1 1
consensus : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
Reference ( family-516 ) : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68041 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68042 : TAATCCG-A-----------C-T-G-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C--T-G-TGC-GGGGGAG
gi|68043 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-A-TGC-AGGGGAG
gi|68044 : TAATCCG-A-GA-T-TTCCTC-T-G-AC-T-C-TA-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGA
gi|68045 : TAATC-G-A-GA-T-T-CCTC-T-G-AC-T-C-T--ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-GTTGC-GGGGGAG
gi|68046 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCG--------C---T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGT-GGGG
gi|68047 : TAATCCG-A-GA-T-T-CCTC-T-G-AC-T-C-TA-ACCC---CCA--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GG
gi|68048 : TAATCCG-A-GA-T-T-CCCC-T-G-GC-T-C-TT-ACCC---CTA--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-GT-G-TGT-GGGAGAG
gi|68049 : TAATCCA-A-GA-T-T-CCTG-T-G-AC-T-C-TT-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68050 : TAATCCA-A-GA-T-T-CCTG-T-G-AC-T-C-TT-ACTC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AC-G-TGC-TGGAGAG
gi|68051 : TAATCCG-A-GA-TCT-CCTC-TTG-AC-T-C-TA-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGG
gi|68052 : TAATTCG-A-GAAT-T-TCTC-C-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TA-TAG--A---C-AC-G-TGC-GGGGGAG
gi|68053 : TAATCCA-A-GA-T-T-CCTC-T-G-AC-T-C-TT-GTGC---CCG--------C-TATTAATAGTAT-TA-TA-T---TG-T-G--A---C-AT-G-TGG-TGGAGAG
gi|68054 : TAATCCG-AAGA-T-T-CCTC-C-G-AC-T-C-TA-ACCC---CCG--------C-TGT--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-CAGGGAG
gi|68055 : TATTCCA-A-GA-T-T-CCTC-T-A-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AA-G-TGC-
gi|68056 : TAATCCG-A-GA-T-T-TCTC-T-G-AC-T-C-TT-ATCC---CTG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-
gi|68057 : TAATC-G-A-GA-T-T-CCTC-T-G-AC-T-C-T--AACC---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-
gi|68058 : TAATTCG-A-GA-T-T-CTTC-CCA-AC-T-C-TT-ATCC-----G--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-AGGGGAG
gi|68059 : TAATTCG-A-GA-T-T-CTTC-CCA-AC-T-C-TT-AATC---CGT--------C-T-T--------T-AA-TA-T---TG-T-G--AT--C-ATCG-TGC-AGGGGAG
gi|68060 : TAATCTG-A-GA-T-T-CCTT-C-A-AC-T-C-TT-AACC---CCG--------C-T-T--------T-TA-TT-T---TG-T-G--A---T-CT-G-TGC-AGGGGA
gi|68061 : TAATCCG-A-GA-T-T-CCTC-C-G-A--T-C-TTCATCC---CCG--------T-T-T--------TATA-TA-TATGTG-T-G--A---C-AA-G-TGC-GGGGGA
gi|68062 : TAATTTG-A-GA-T-T-CCTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-A--------T-TA-TA-T---TG-T-G------C-AT-
gi|68063 : TAACCTG-A-TA-T-T-CCTC-G-G-AC-T-C-TT-GCCT---CTG--------T-G-T--------T-TA-TA-T---CG-T-G--G---C-AT-G-TGC-AGGGAAG
gi|68064 : TAGTTCG-A-GA-T-A-TCTC-T-G-AC-TGT-TT-ACCT---CTG--------C-T-T--------T-CA-TA-T---TG-T-G--G---C-AT-G-TG
gi|68065 : TAATTTG-A-GA-T-T-TCTC-A-G-AC-T-C-TT-ACTT---AAATTTTTTATC-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68066 : TAATCTG-A-GA-T-T-CTTC-T-G-AC-T-C-TT-ACCC---CTG--------C-T-T--------T-TG-AA-T---T-------A---C-AT-G-T
gi|68067 : TAATCCA-A-TA-T-T-CCTA-C-G-AC-T-C-TTAACCC---CCA--------C-A-T--------T-TA-CA-T---TG-T-G--GGGTC-AT-G-TGT-ATGGGAG
gi|68068 : TAATTGA-A-GA-T-T-CCTT-G-G-AT-T-C-TC-CCAC---CCG--------C-C-T--------C-TA-TA-T---TG-T-T--T---C-AT-G-TGCAGGGGGAG
gi|68069 : TAATCGA-G-GA-T-T-CCTC-T-GAAC-T-C-TA-AACC---CCG--------C---T--------T-TA-TA-T---TG-T-G--A---C--T-G-TGC-
gi|68070 : AATCCGGA-GA-T-T-CCTCGT-G-AC-T-C-TA-ACCCGCTCCG--------C-T-T--------TCTA-TA-T---TG-T-G--A---C-AT-G-
gi|68071 : AATCCG-A-GC-T-T-CCTC-T-G-AC-T-T-TT-ATCT---CCG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TAT-TGGGG
gi|68072 : ATCCG-ACGA-T-T-CCTCCT-G-ACAT-C-TA-ACCC---CCG--------C-T-T--------T-TAATA-T---TG-T-GG-A---C-AT-G-TGC-GGGGGAG
gi|68073 : TCCG-A-GA-C-A-TCCC-T-G-AC-G-T-CT-AACC---CCG--------C-T-T--------T-TA-TA-TTA-TG-T-G--A---CAAT-G-T-C-GGGGGA
gi|68074 : TCC--A-GA-T-T-CCTC-G-G-AT-T-CCTT-ACCC---CCG--------C-T-T--------T-TA-TA-T---TGTT-G--A---C-AC-G-TGC-GGGGGAG
gi|68075 : CCG-G-AA-T-T-CCTC-T-G-AC-T-C-TT-ATCC---CCT--------CTT-T--------T-TA-TA-T---TC-C-G--A---C-AT-G-TGT-
gi|68076 : CTC-T-G-AC-T-C-TT-ACCC---CCG--------C-T-T--------T-CA-TG-T---TG-T-G--G---T-AT-G-TGT-GCAGGA
gi|68077 : -G-AA-T-C-TT-ACCC---CTG--------C-T-TAA------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGGGAG
gi|68078 : -AT-T-C-TT-ACCC---CTG--------C-T-T--------T-TA-TATT---TG-T-G--A---C-AT-G-TGC-GGGGGA
gi|68079 : -T-C-TT-ACCCA--CTG--------C-T-T--------T-TA-TA-T---TG-T-GAAA---C-CT-G-TGC-GGGGGAG
gi|68080 : T-ACCC---CTG--------C-T-T--------T-TA-TA-T---TG-T-G--A---C-AT-G-TGC-GGGG