lowQualScore : 22222
lowQualScore : 1 1 1 1 2 1 1 33 1 1 1 1 1 55555 55 3 3 22 2 2 2 2 2 33 2
lowQualScore : . . . . . . . .. . . . . . ..... .. . . .. . . . . . .. .
lowQualScore : 1 1 1 1 1 1 1 00 4 4 4 4 4 77777 00 2 0 11 5 5 5 5 5 44 7
consensus : CAGGAG-CC-TGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTTAA-GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Reference ( gi|49071 ) : CAGGAG-CC-TGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49073 : CAGGAG-CC-AGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CA-C-CC-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49070 : CAGGGG-CC-TGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTTA--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49075 : CAGGAG-CC-TGTT-TTCAT-C-AAA-GGTCGT-AG-ACTT-ATCG-C-CC-----TAA--TTTAAAGGCTAAGTT-CAGAG-GGC-TTACG-CC-AATATTT--AGGCGGGGG-TATTTTCTG
gi|49077 : CAGGAGGCC-TGTT---CAT-C-AAA-GGTCGT-AGGACTT-G-CG-C-CC-----TAA--TT-AA-GGCTAG--T-CAGAG-G-C-TTACG-CC-AATATTT--AGTCGGGCGATATTTTCTG
gi|49079 : CAGGAG-CC-TGTT-T-CAT-C-AAA-GGTCG--AG-ACTT-A-CG-C-CC-----TAAT-TTTAA-GGCTA-----TAGAG-GGC-TTAGG-CC-AAAATAT--A
gi|49085 : CAGAAG-CC-TGTT-T-CAT-C-AAA-GAGCGT-AG-ACTT-A-CG-C-CC-----TAA--TTTAA-GGCCAG--aaa
gi|49084 : CAGGAG-C--TGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CG---CC-----TAA--ATTAA-GGCTA
gi|49067 : CAGGAG-CC-TGTT-T-CAT-C-AAA-GGTCG--------T-A-CG-C-CCAGCG-TAA--CTTTA-CGCCAG--cgctttcaagcaggcct
gi|49066 : CAGGAG-CC-TGTT-T-CAT-C-AAA-GGTCG--------T-A-CG-C-CCAGCG-TAA--CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49076 : CAGGAG-CC-TGTT-T-CAT-C-AAA-GGTCGT-Agcgtaagtcccggactaacacaaaatc
gi|49068 : CAGGAG-CC-TGTT-T-CAT-G-AAA-GGTCG--------T-A-CG-C-CCAGCG-TAA--CTTTA-CGCCAG--cgccagcgtaactttacgccaggcgtaagtcccgactaaccaaaatc
gi|49081 : CAGGAG-CC-TGTT-T-CAT---AAA-GGTCGT-Agcgtaagtcccggactaacacaaaatc
gi|49080 : CAGGAG-CC-TGTT-T-CAT---AAA-GGTCGT-Accgcttccgcgtaaactttacgccagacgtaagtcgcggataacacaaa
gi|49078 : CAGGAG-CC-GATT-T-CAT-C-AAA-GGTCGT-Accgcttccgcgtaaactttacgccagacgtaagtcgcggataacacaaa
gi|49082 : CAGTGG-CC-TGTT-T-CAT-C-GAA-GGTCGT-Acgcccggcgtaactttacgcagacgtaagtcccggactaacacaaaat
gi|49072 : CAGTGA-CC-TGTT-T-CAT-C-AAA-GGTCGT-Acgcctggcgtaactcctggacttacataaaat
gi|49074 : CAGGAG-CC-TGTTAT-CATAC-AAA--GTCG--------T-A-CG-C-CCAGCG-TAAC-TTTAC-CGCCAG--cgcccagcgttaactttacgccacaggcgtaagtcccggactaacacaaaatc
gi|49088 : GGAG-CC-TGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaa
gi|49087 : GGAG-CC-GGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49091 : GGAG-CC-TGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTC-GGCG-TATTTTCTG
gi|49094 : GGAG-CC-TATT-T-CAT-C-AAA-GGTCGTAAG-ACTT---CG-C-CC-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CCAAATATTT--AGTC-GGCG-TATTTTCTG
gi|49093 : GGAG-CC-TGTT-T-CAT-C-AAA-GGTCGT-AG-ACTT-A-C--C-CC-----TGA--TTTAA-GGCCAG--T-GAGAG-GGC-CTACG-CC-AATA-TT--AGTTGGGCG-TATTTTCTG
gi|49097 : GGAG-CC-TGTT-T-CAT-C-AAAAGGTCGT-AG-ACTTTA-CG-C-C------TAA--TTTAAAGGCTAG--T-CAGAGCGGC-TTACG-CC-AATATTT--AGTCGGGCG-TA-TTTCTG
gi|49096 : GGA--CC-TGTT-T-CAT-C-AGA-AGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTT-A-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49095 : GGA--CC-TGTT-T-CAT-C-AGA-AGTCGT-AG-ACTT-A-CG-C-CC-----TAA--TTT-A-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49086 : GGAG-CC-TGTT-T-CAT-C-AAA-GGTCG--------T-A-CG-C-CCAGCG-TAA--CTTTA-CGCCAG--
gi|49089 : GGAG-CC-TGTT-T-CAT-C-AAA-GGTCGT-Agcgtaagtcccggactaacacaaaatc
gi|49098 : GGAG-CC-TGTT-T-CATCC-AAA-GGTCGT-AC-ACcgccagcgtaactttacgccaggcgtaagtcccggactaacacaaaatc
gi|49090 : GGAG-CC-TGTT---CAT-C-AAA-GGTCG--------T-A-CG-C-CCAGCG-TAA--CTTTA-CGCCAG--accagcgtaacttctacgcacaggcgtaacgtcccggggacgatacacagaat
gi|49092 : GGAG-C--TGTT-T-CAT-CCAAA-GGTCGT-Agcgtaagtcccggactaacacaaaatc
gi|49099 : GAG-CCATGTT---CAT-C-AAA-GGTCGT--G-ACTT-A-C--C-CC-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AA-ATTT--AGTCGGGCG-GATTTTCTGcgccaggtaactttacgccaggcgtaagtcccggactacacaaaatc
gi|49102 : GAG-CC-TGTT-T-CAT-C-CAA-A-TCGT-AG-ACTT-A-CGCC-CC-----TAA--TTTAA-GGC-AG--T-CAGGA-GGC-TTACG-CC-AATATTT--AGTCGGGC--TA-TTTCTG
gi|49100 : GAG-CC--GTT-T-CAT-C-AAA-GGTCG--------T-A-CG-C-CCAAGCGTAA--CTTTA-CGCCAG--
gi|49101 : GAG-GC-T-TT-T-CAT-C-AAA-GGTCGT-AC-GCCC-A--G-T-CG-----TAA--CTTTA-CGCCAG--gcgttaagtcccggactacacaaaaatc
gi|49103 : AG-CC-TGTT-T-CAT-C-AAA-GGTCGT-Agcgtaagctcccggactaaca
gi|49104 : G-CC-TGTT-T-CAT-C-AA--GGTCGT-AG-ACTT-A-CG-CGCC-----T-A--TTT-A-GGCTAG--TCCAGAG-GGCTTTACGCCC-AATATTTTAAGTCGGGCG-TATTTTCTcgccca
gi|49105 : -CC-TGTT-T-CAT-C-AAA-GGT--------TTT-A-CG-C-C
gi|49106 : TT-T-CAT-C-AAA-GGTCGT------T----CG-C-CCGGCG-TAACTTTTAC-GGCCAG--aggcgtaagtcccggacttacacaaaatctaagaccactttctg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|49069 ): CAGGAGCCTGTTCATGCCAAGTCTACGCCCAGCGTAACTTTACGCCAGGGCGTAAGTCCCGGCCTAACACAAAATCTAAGACATTTT
Unaligned ( gi|49083 ): CAGGATGTTTTTCATCAAAGGTGTACGCCAGCGTAATTTTACGCCAGGCGTAAGTCCGGACTACACAAA
Alignments
lowQualScore : 11111111 22222222
lowQualScore : 1 1 1 22 2 1 1 55555555 1 1 1 1 33333333 33 5 33 11 2 2 2 2 2 33 2
lowQualScore : . . . .. . . . ........ . . . . ........ .. . .. .. . . . . . .. .
lowQualScore : 0 0 0 44 0 0 0 55555555 1 1 1 1 66666666 99 6 00 77 4 4 4 4 4 22 5
consensus : CAGGAG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTNA-GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Reference ( family-505 ) : CAGGAG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTAA-GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49066 : CAGGAG-CC-TGTT-T--CAT-C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA--CTTTA-CGCCAG--
gi|49067 : CAGGAG-CC-TGTT-T--CAT-C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA--CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49068 : CAGGAG-CC-TGTT-T--CAT-G-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA--CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49070 : CAGGGG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTA--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49071 : CAGGAG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49072 : CAGTGA-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--C-GCCC-A--G-C-G--T-----TAA--CTTTA-CGCCA
gi|49073 : CAGGAG-CC-AGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CA-C-C--C-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGcaggcgtaagtcccggactaacacaaaatc
gi|49074 : CAGGAG-CC-TGTTAT--CATAC-AAA--GTCG----------T-A-CG-C-C--CAGCG-TAAC-TTTAC-CGCCAG--
gi|49075 : CAGGAG-CC-TGTT-TT-CAT-C-AAA-GGTCGT-A--G-ACTT-ATCG-C-C--C-----TAA--TTTAAAGGCTAAGTT-CAGAG-GGC-TTACG-CC-AATATTT--AGGCGGGGG-TATTTTCTGgcgtaagtcccggactaacacaaaa
gi|49076 : CAGGAG-CC-TGTT-T--CAT-C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAA--CTTTA-CGCCAG--
gi|49077 : CAGGAGGCC-TGTT----CAT-C-AAA-GGTCGT-A--GGACTT-G-CG-C-C--C-----TAA--TT-AA-GGCTAG--T-CAGAG-G-C-TTACG-CC-AATATTT--AGTCGGGCGATATTTTCTGgcgtaagtcccgactaaccaaaatc
gi|49078 : CAGGAG-CC-GATT-T--CAT-C-AAA-GGTCGT-A--
gi|49079 : CAGGAG-CC-TGTT-T--CAT-C-AAA-GGTCG--A--G-ACTT-A-CG-C-C--C-----TAAT-TTTAA-GGCTA-----TAGAG-GGC-TTAGG-CC-AAAATAT--Acgcccggcgtaactttacgcagacgtaagtcccggactaacacaaaat
gi|49080 : CAGGAG-CC-TGTT-T--CAT---AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAA--CTTTA-CGCCAG--aaa
gi|49081 : CAGGAG-CC-TGTT-T--CAT---AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAA--CTTTA-CGCCAG--acgtaagtcgcggataacacaaa
gi|49082 : CAGTGG-CC-TGTT-T--CAT-C-GAA-GGTCGT-A--acgtaagtcgcggataacacaaa
gi|49083 : CAGGA-----TGTT-TTTCAT-C-AAA-GGT-G----------T-A-CG-C-CAGCG----TAA--TTTTA-CGCCAG--cgcctggcgtaactcctggacttacataaaat
gi|49084 : CAGGAG-C--TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG---C--C-----TAA--ATTAA-GGCTAgcgtaagtccggactacacaaa
gi|49085 : CAGAAG-CC-TGTT-T--CAT-C-AAA-GAGCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTAA-GGCCAG--cgctttcaagcaggcct
gi|49086 : GGAG-CC-TGTT-T--CAT-C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA--CTTTA-CGCCAG--
gi|49087 : GGAG-CC-GGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49088 : GGAG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49089 : GGAG-CC-TGTT-T--CAT-C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAA--CTTTA-CGCCAG--
gi|49090 : GGAG-CC-TGTT----CAT-C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA--CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49091 : GGAG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTC-GGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49092 : GGAG-C--TGTT-T--CAT-CCAAA-GGTCG----------T-A-CG-C-CAGG-----TAA--CTTTA-CGCCAG--
gi|49093 : GGAG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--G-ACTT-A-C--C-C--C-----TGA--TTTAA-GGCCAG--T-GAGAG-GGC-CTACG-CC-AATA-TT--AGTTGGGCG-TATTTTCTGgcgtaagtcccggactacacaaaatc
gi|49094 : GGAG-CC-TATT-T--CAT-C-AAA-GGTCGTAA--G-ACTT---CG-C-C--C-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CCAAATATTT--AGTC-GGCG-TATTTTCTG
gi|49095 : GGA--CC-TGTT-T--CAT-C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49096 : GGA--CC-TGTT-T--CAT-C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49097 : GGAG-CC-TGTT-T--CAT-C-AAAAGGTCGT-A--G-ACTTTA-CG-C-C--------TAA--TTTAAAGGCTAG--T-CAGAGCGGC-TTACG-CC-AATATTT--AGTCGGGCG-TA-TTTCTG
gi|49098 : GGAG-CC-TGTT-T--CATCC-AAA-GGTCGT-A--C-AC
gi|49099 : GAG-CCATGTT----CAT-C-AAA-GGTCGT----G-ACTT-A-C--C-C--C-----TAA--TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AA-ATTT--AGTCGGGCG-GATTTTCTGaccagcgtaacttctacgcacaggcgtaacgtcccggggacgatacacagaat
gi|49100 : GAG-CC--GTT-T--CAT-C-AAA-GGTCG----------T-A-CG-C-C--CAAGCGTAA--CTTTA-CGCCAG--
gi|49101 : GAG-GC-T-TT-T--CAT-C-AAA-GGTCGT-A--C-GCCC-A--G-T-C--G-----TAA--CTTTA-CGCCAG--gcgttaagtcccggactacacaaaaatc
gi|49102 : GAG-CC-TGTT-T--CAT-C-CAA-A-TCGT-A--G-ACTT-A-CGCC-C--C-----TAA--TTTAA-GG-CAG--T-CAGGA-GGC-TTACG-CC-AATATTT--AGTCGGGC--TA-TTTCTGgcgtaagctcccggactaaca
gi|49103 : AG-CC-TGTT-T--CAT-C-AAA-GGTCGT-A--
gi|49104 : G-CC-TGTT-T--CAT-C-AA--GGTCGT-A--G-ACTT-A-CG-CGC--C-----T-A--TTT-A-GGCTAG--TCCAGAG-GGCTTTACGCCC-AATATTTTAAGTCGGGCG-TATTTTCTcgccca
gi|49105 : -CC-TGTT-T--CAT-C-AAA-GGT----------TTT-A-CG-C-C--
gi|49106 : TT-T--CAT-C-AAA-GGTCGT--------T----CG-C-C--CGGCG-TAACTTTTAC-GGCCAG--aggcgtaagtcccggacttacacaaaatctaagaccactttctg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|49069 ): CAGGAGCCTGTTCATGCCAAGTCTACGCCCAGCGTAACTTTACGCCAGGGCGTAAGTCCCGGCCTAACACAAAATCTAAGACATTTT
Alignments
lowQualScore : 11111111 22222
lowQualScore : 1 1 1 22 33 1 1 99999999 1 1 1 1 55 66666 2 4 55 11 2 2 2 2 2 33 2
lowQualScore : . . . .. .. . . ........ . . . . .. ..... . . .. .. . . . . . .. .
lowQualScore : 0 0 0 33 33 0 0 00000000 1 1 1 1 88 66666 2 2 88 66 4 4 4 4 4 22 5
consensus : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-CTTNA-GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Reference ( family-505 ) : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTTNA-GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49066 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-CTTTA-CGCCAG--
gi|49067 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49068 : CAGGAG-CC-TGTT-T--CAT--G-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49069 : CAGGAG-CC-TG-T-T--CATGCC-AA---GTC-----------T-A-CG-C-C--CAGCG-TAA-CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49070 : CAGGGG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTT-A-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGggcgtaagtcccggcctaacacaaaatctaagacatttt
gi|49071 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49072 : CAGTGA-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-C-G--T-----TAA-CTTTA-CGCCA
gi|49073 : CAGGAG-CC-AGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CA-C-C--C-----TAA-TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGcaggcgtaagtcccggactaacacaaaatc
gi|49074 : CAGGAG-CC-TGTTAT--CATA-C-AAA--GTCG----------T-A-CG-C-C--CAGCG-TAA-CTTTACCGCCAG--
gi|49075 : CAGGAG-CC-TGTT-TT-CAT--C-AAA-GGTCGT-A--G-ACTT-ATCG-C-C--C-----TAA-TTTAAAGGCTAAGTT-CAGAG-GGC-TTACG-CC-AATATTT--AGGCGGGGG-TATTTTCTGgcgtaagtcccggactaacacaaaa
gi|49076 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAA-CTTTA-CGCCAG--
gi|49077 : CAGGAGGCC-TGTT----CAT--C-AAA-GGTCGT-A--GGACTT-G-CG-C-C--C-----TAA-TT-AA-GGCTAG--T-CAGAG-G-C-TTACG-CC-AATATTT--AGTCGGGCGATATTTTCTGgcgtaagtcccgactaaccaaaatc
gi|49078 : CAGGAG-CC-GATT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CGGCG-TAA-CTTTA-CGC
gi|49079 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG--A--G-ACTT-A-CG-C-C--C-----TAATTTTAA-GGCTA-----TAGAG-GGC-TTAGG-CC-AAAATAT--Aagacgtaagtcccggactaacacaaaat
gi|49080 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAA-CTTTA-CGCCAG--aaa
gi|49081 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAA-CTTTA-CGCCAG--acgtaagtcgcggataacacaaa
gi|49082 : CAGTGG-CC-TGTT-T--CAT--C-GAA-GGTCGT-A--acgtaagtcgcggataacacaaa
gi|49083 : CAGGA-----TGTT-TTTCAT--C-AAA-GGT-G----------T-A-CG-C-CAGCG----TAA-TTTTA-CGCCAG--cgcctggcgtaactcctggacttacataaaat
gi|49084 : CAGGAG-C--TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG---C--C-----TAA-ATTAA-GGCTAgcgtaagtccggactacacaaa
gi|49085 : CAGAAG-CC-TGTT-T--CAT--C-AAA-GAGCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTTAA-GGCCAG--cgctttcaagcaggcct
gi|49086 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-CTTTA-CGCCAG--
gi|49087 : GGAG-CC-GGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49088 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49089 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAA-CTTTA-CGCCAG--
gi|49090 : GGAG-CC-TGTT----CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-CTTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49091 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTC-GGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49092 : GGAG-C--TGTT-T--CAT--CCAAA-GGTCG----------T-A-CG-C-CAGG-----TAA-CTTTA-CGCCAG--
gi|49093 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-C--C-C--C-----TGA-TTTAA-GGCCAG--T-GAGAG-GGC-CTACG-CC-AATA-TT--AGTTGGGCG-TATTTTCTGgcgtaagtcccggactacacaaaatc
gi|49094 : GGAG-CC-TATT-T--CAT--C-AAA-GGTCGTAA--G-ACTT---CG-C-C--C-----TAA-TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CCAAATATTT--AGTC-GGCG-TATTTTCTG
gi|49095 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTT-A-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49096 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-TTT-A-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49097 : GGAG-CC-TGTT-T--CAT--C-AAAAGGTCGT-A--G-ACTTTA-CG-C-C--------TAA-TTTAAAGGCTAG--T-CAGAGCGGC-TTACG-CC-AATATTT--AGTCGGGCG-TA-TTTCTG
gi|49098 : GGAG-CC-TGTT-T--CATC-C-AAA-GGTCGT-A--C-AC
gi|49099 : GAG-CCATGTT----CAT--C-AAA-GGTCGT----G-ACTT-A-C--C-C--C-----TAA-TTTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AA-ATTT--AGTCGGGCG-GATTTTCTGaccagcgtaacttctacgcacaggcgtaacgtcccggggacgatacacagaat
gi|49100 : GAG-CC--GTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAAGCGTAA-CTTTA-CGCCAG--
gi|49101 : GAG-GC-T-TT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-T-C--G-----TAA-CTTTA-CGCCAG--gcgttaagtcccggactacacaaaaatc
gi|49102 : GAG-CC-TGTT-T--CAT--C-CAA-A-TCGT-A--G-ACTT-A-CGCC-C--C-----TAA-TTTAA-GG-CAG--T-CAGGA-GGC-TTACG-CC-AATATTT--AGTCGGGC--TA-TTTCTGgcgtaagctcccggactaaca
gi|49103 : AG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--
gi|49104 : G-CC-TGTT-T--CAT--C-AA--GGTCGT-A--G-ACTT-A-CG-CGC--C-----TA---TTTA-GGCTAG--TCCAGAG-GGCTTTACGCCC-AATATTTTAAGTCGGGCG-TATTTTCTcgccca
gi|49105 : -CC-TGTT-T--CAT--C-AAA-GGT----------TTT-A-CG-C-C--
gi|49106 : TT-T--CAT--C-AAA-GGTCGT--------T----CG-C-C--CGGCG-TAACTTTTACGGCCAG--aggcgtaagtcccggacttacacaaaatctaagaccactttctg
Alignments
lowQualScore : 11111111 22222
lowQualScore : 1 1 1 1 33 1 1 77777777 1 1 1 1 44 66666 444 1 55 11 2 2 2 2 2 33 2
lowQualScore : . . . . .. . . ........ . . . . .. ..... ... . .. .. . . . . . .. .
lowQualScore : 0 0 0 0 44 0 0 33333333 1 1 1 1 55 22222 999 0 66 77 4 4 4 4 4 22 5
consensus : CAGGAG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-C-TTTA-GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Reference ( family-505 ) : CAGGAG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-C-TTNA-GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49066 : CAGGAG-CC-TGTT-T-CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-C-TTTA-CGCCAG--
gi|49067 : CAGGAG-CC-TGTT-T-CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-C-TTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49068 : CAGGAG-CC-TGTT-T-CAT--G-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-C-TTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49069 : CAGGAG-CC-TG-T-T-CATGCC-AA---GTC-----------T-A-CG-C-C--CAGCG-TAA-C-TTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49070 : CAGGGG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA---TTTA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGggcgtaagtcccggcctaacacaaaatctaagacatttt
gi|49071 : CAGGAG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-T-TTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49072 : CAGTGA-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-C-G--T-----TAA-C-TTTA-CGCCA
gi|49073 : CAGGAG-CC-AGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CA-C-C--C-----TAA-T-TTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGcaggcgtaagtcccggactaacacaaaatc
gi|49074 : CAGGAG-CC-TGTTAT-CATA-C-AAA--GTCG----------T-A-CG-C-C--CAGCG-TAA-C-TTTACCGCCAG--
gi|49075 : CAGGAG-CC-TGTT-TTCAT--C-AAA-GGTCGT-A--G-ACTT-ATCG-C-C--C-----TAA-T-TTAAAGGCTAAGTT-CAGAG-GGC-TTACG-CC-AATATTT--AGGCGGGGG-TATTTTCTGgcgtaagtcccggactaacacaaaa
gi|49076 : CAGGAG-CC-TGTT-T-CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAA-C-TTTA-CGCCAG--
gi|49077 : CAGGAGGCC-TGTT---CAT--C-AAA-GGTCGT-A--GGACTT-G-CG-C-C--C-----TAA---TTAA-GGCTAG--T-CAGAG-G-C-TTACG-CC-AATATTT--AGTCGGGCGATATTTTCTGgcgtaagtcccgactaaccaaaatc
gi|49078 : CAGGAG-CC-GATT-T-CAT--C-AAA-GGTCG----------T-A-CG-C-C--CGGCG-TAA-C-TTTA-CGC
gi|49079 : CAGGAG-CC-TGTT-T-CAT--C-AAA-GGTCG--A--G-ACTT-A-CG-C-C--C-----TAATT-TTAA-GGCTA-----TAGAG-GGC-TTAGG-CC-AAAATAT--Aagacgtaagtcccggactaacacaaaat
gi|49080 : CAGGAG-CC-TGTT-T-CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAA-C-TTTA-CGCCAG--aaa
gi|49081 : CAGGAG-CC-TGTT-T-CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAA-C-TTTA-CGCCAG--acgtaagtcgcggataacacaaa
gi|49082 : CAGTGG-CC-TGTT-T-CAT--C-GAA-GGTCGT-A--acgtaagtcgcggataacacaaa
gi|49084 : CAGGAG-C--TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG---C--C-----TAA-A-TTAA-GGCTAcgcctggcgtaactcctggacttacataaaat
gi|49085 : CAGAAG-CC-TGTT-T-CAT--C-AAA-GAGCGT-A--G-ACTT-A-CG-C-C--C-----TAA-T-TTAA-GGCCAG--cgctttcaagcaggcct
gi|49086 : GGAG-CC-TGTT-T-CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-C-TTTA-CGCCAG--
gi|49087 : GGAG-CC-GGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-T-TTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49088 : GGAG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-T-TTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49089 : GGAG-CC-TGTT-T-CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAA-C-TTTA-CGCCAG--
gi|49090 : GGAG-CC-TGTT---CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAA-C-TTTA-CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49091 : GGAG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA-T-TTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTC-GGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49092 : GGAG-C--TGTT-T-CAT--CCAAA-GGTCG----------T-A-CG-C-CAGG-----TAA-C-TTTA-CGCCAG--
gi|49093 : GGAG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--G-ACTT-A-C--C-C--C-----TGA-T-TTAA-GGCCAG--T-GAGAG-GGC-CTACG-CC-AATA-TT--AGTTGGGCG-TATTTTCTGgcgtaagtcccggactacacaaaatc
gi|49094 : GGAG-CC-TATT-T-CAT--C-AAA-GGTCGTAA--G-ACTT---CG-C-C--C-----TAA-T-TTAA-GGCTAG--T-CAGAG-GGC-TTACG-CCAAATATTT--AGTC-GGCG-TATTTTCTG
gi|49095 : GGA--CC-TGTT-T-CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA---TTTA-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49096 : GGA--CC-TGTT-T-CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA---TTTA-GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49097 : GGAG-CC-TGTT-T-CAT--C-AAAAGGTCGT-A--G-ACTTTA-CG-C-C--------TAA-T-TTAAAGGCTAG--T-CAGAGCGGC-TTACG-CC-AATATTT--AGTCGGGCG-TA-TTTCTG
gi|49098 : GGAG-CC-TGTT-T-CATC-C-AAA-GGTCGT-A--C-AC
gi|49099 : GAG-CCATGTT---CAT--C-AAA-GGTCGT----G-ACTT-A-C--C-C--C-----TAA-T-TTAA-GGCTAG--T-CAGAG-GGC-TTACG-CC-AA-ATTT--AGTCGGGCG-GATTTTCTGaccagcgtaacttctacgcacaggcgtaacgtcccggggacgatacacagaat
gi|49100 : GAG-CC--GTT-T-CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAAGCGTAA-C-TTTA-CGCCAG--
gi|49101 : GAG-GC-T-TT-T-CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-T-C--G-----TAA-C-TTTA-CGCCAG--gcgttaagtcccggactacacaaaaatc
gi|49102 : GAG-CC-TGTT-T-CAT--C-CAA-A-TCGT-A--G-ACTT-A-CGCC-C--C-----TAA-T-TTAA-GG-CAG--T-CAGGA-GGC-TTACG-CC-AATATTT--AGTCGGGC--TA-TTTCTGgcgtaagctcccggactaaca
gi|49103 : AG-CC-TGTT-T-CAT--C-AAA-GGTCGT-A--
gi|49104 : G-CC-TGTT-T-CAT--C-AA--GGTCGT-A--G-ACTT-A-CG-CGC--C-----TA----TTTA-GGCTAG--TCCAGAG-GGCTTTACGCCC-AATATTTTAAGTCGGGCG-TATTTTCTcgccca
gi|49105 : -CC-TGTT-T-CAT--C-AAA-GGT----------TTT-A-CG-C-C--
gi|49106 : TT-T-CAT--C-AAA-GGTCGT--------T----CG-C-C--CGGCG-TAA-CTTTTACGGCCAG--aggcgtaagtcccggacttacacaaaatctaagaccactttctg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|49083 ): CAGGATGTTTTTCATCAAAGGTGTACGCCAGCGTAATTTTACGCCAGGCGTAAGTCCGGACTACACAAA
Alignments
lowQualScore : 11111111 22222
lowQualScore : 1 1 1 22 33 1 1 77777777 1 1 1 1 44 88888 66 1 777 11 2 2 2 2 2 33 2
lowQualScore : . . . .. .. . . ........ . . . . .. ..... .. . ... .. . . . . . .. .
lowQualScore : 0 0 0 33 33 0 0 99999999 1 1 1 1 33 11111 66 1 111 66 4 4 4 4 4 22 5
consensus : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Reference ( family-505 ) : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49066 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--
gi|49067 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49068 : CAGGAG-CC-TGTT-T--CAT--G-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49069 : CAGGAG-CC-TG-T-T--CATGCC-AA---GTC-----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49070 : CAGGGG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGggcgtaagtcccggcctaacacaaaatctaagacatttt
gi|49071 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49072 : CAGTGA-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-C-G--T-----TAAC-TTT-A--CGCCA
gi|49073 : CAGGAG-CC-AGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CA-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGcaggcgtaagtcccggactaacacaaaatc
gi|49074 : CAGGAG-CC-TGTTAT--CATA-C-AAA--GTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-AC-CGCCAG--
gi|49075 : CAGGAG-CC-TGTT-TT-CAT--C-AAA-GGTCGT-A--G-ACTT-ATCG-C-C--C-----TAA--TTT-AAAGGCTAAGTT-CAGAG-GGC-TTACG-CC-AATATTT--AGGCGGGGG-TATTTTCTGgcgtaagtcccggactaacacaaaa
gi|49076 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAAC-TTT-A--CGCCAG--
gi|49077 : CAGGAGGCC-TGTT----CAT--C-AAA-GGTCGT-A--GGACTT-G-CG-C-C--C-----TAA--TTA-A--GGCTAG--T-CAGAG-G-C-TTACG-CC-AATATTT--AGTCGGGCGATATTTTCTGgcgtaagtcccgactaaccaaaatc
gi|49078 : CAGGAG-CC-GATT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CGGCG-TAAC-TTT-A--CGC
gi|49079 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG--A--G-ACTT-A-CG-C-C--C-----TAAT-TTTAA--GGCTA-----TAGAG-GGC-TTAGG-CC-AAAATAT--Aagacgtaagtcccggactaacacaaaat
gi|49080 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAAC-TTT-A--CGCCAG--aaa
gi|49081 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAAC-TTT-A--CGCCAG--acgtaagtcgcggataacacaaa
gi|49082 : CAGTGG-CC-TGTT-T--CAT--C-GAA-GGTCGT-A--acgtaagtcgcggataacacaaa
gi|49083 : CAGGA-----TGTT-TTTCAT--C-AAA-GGT-G----------T-A-CG-C-CAGCG----TAAT-TTT-A--CGCCAG--cgcctggcgtaactcctggacttacataaaat
gi|49084 : CAGGAG-C--TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG---C--C-----TAAA-TTA-A--GGCTAgcgtaagtccggactacacaaa
gi|49085 : CAGAAG-CC-TGTT-T--CAT--C-AAA-GAGCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCCAG--cgctttcaagcaggcct
gi|49086 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--
gi|49087 : GGAG-CC-GGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49088 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49089 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAAC-TTT-A--CGCCAG--
gi|49090 : GGAG-CC-TGTT----CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49091 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTC-GGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49092 : GGAG-C--TGTT-T--CAT--CCAAA-GGTCGT-A-----------CG-C-C--AGG---TAAC-TTT-A--CGCCAG--
gi|49093 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-C--C-C--C-----TGAT-TTA-A--GGCCAG--T-GAGAG-GGC-CTACG-CC-AATA-TT--AGTTGGGCG-TATTTTCTGgcgtaagtcccggactacacaaaatc
gi|49094 : GGAG-CC-TATT-T--CAT--C-AAA-GGTCGTAA--G-ACTT---CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CCAAATATTT--AGTC-GGCG-TATTTTCTG
gi|49095 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49096 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49097 : GGAG-CC-TGTT-T--CAT--C-AAAAGGTCGT-A--G-ACTTTA-CG-C-C--------TAA--TTT-AAAGGCTAG--T-CAGAGCGGC-TTACG-CC-AATATTT--AGTCGGGCG-TA-TTTCTG
gi|49098 : GGAG-CC-TGTT-T--CATC-C-AAA-GGTCGT-A--C-AC
gi|49099 : GAG-CCATGTT----CAT--C-AAA-GGTCGT----G-ACTT-A-C--C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AA-ATTT--AGTCGGGCG-GATTTTCTGaccagcgtaacttctacgcacaggcgtaacgtcccggggacgatacacagaat
gi|49100 : GAG-CC--GTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAAGCGTAAC-TTT-A--CGCCAG--
gi|49101 : GAG-GC-T-TT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-T-C--G-----TAAC-TTT-A--CGCCAG--gcgttaagtcccggactacacaaaaatc
gi|49102 : GAG-CC-TGTT-T--CAT--C-CAA-A-TCGT-A--G-ACTT-A-CGCC-C--C-----TAA--TTT-A--AGGCAG--T-CAGGA-GGC-TTACG-CC-AATATTT--AGTCGGGC--TA-TTTCTGgcgtaagctcccggactaaca
gi|49103 : AG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--
gi|49104 : G-CC-TGTT-T--CAT--C-AA--GGTCGT-A--G-ACTT-A-CG-CGC--C-----TA---TTT-A--GGCTAG--TCCAGAG-GGCTTTACGCCC-AATATTTTAAGTCGGGCG-TATTTTCTcgccca
gi|49105 : -CC-TGTT-T--CAT--C-AAA-GGT----------TTT-A-CG-C-C--
gi|49106 : TT-T--CAT--C-AAA-GGTCGT--------T----CG-C-C--CGGCG-TAACTTTT-AC-GGCCAG--aggcgtaagtcccggacttacacaaaatctaagaccactttctg
Alignments
lowQualScore : 11111111 22222
lowQualScore : 1 1 1 22 33 1 1 77777777 1 1 1 1 44 88888 66 1 777 11 2 2 2 2 2 33 2
lowQualScore : . . . .. .. . . ........ . . . . .. ..... .. . ... .. . . . . . .. .
lowQualScore : 0 0 0 33 33 0 0 99999999 1 1 1 1 33 11111 66 1 111 66 4 4 4 4 4 22 5
consensus : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Reference ( family-505 ) : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49066 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--
gi|49067 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49068 : CAGGAG-CC-TGTT-T--CAT--G-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49069 : CAGGAG-CC-TG-T-T--CATGCC-AA---GTC-----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49070 : CAGGGG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGggcgtaagtcccggcctaacacaaaatctaagacatttt
gi|49071 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49072 : CAGTGA-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-C-G--T-----TAAC-TTT-A--CGCCA
gi|49073 : CAGGAG-CC-AGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CA-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGcaggcgtaagtcccggactaacacaaaatc
gi|49074 : CAGGAG-CC-TGTTAT--CATA-C-AAA--GTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-AC-CGCCAG--
gi|49075 : CAGGAG-CC-TGTT-TT-CAT--C-AAA-GGTCGT-A--G-ACTT-ATCG-C-C--C-----TAA--TTT-AAAGGCTAAGTT-CAGAG-GGC-TTACG-CC-AATATTT--AGGCGGGGG-TATTTTCTGgcgtaagtcccggactaacacaaaa
gi|49076 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAAC-TTT-A--CGCCAG--
gi|49077 : CAGGAGGCC-TGTT----CAT--C-AAA-GGTCGT-A--GGACTT-G-CG-C-C--C-----TAA--TTA-A--GGCTAG--T-CAGAG-G-C-TTACG-CC-AATATTT--AGTCGGGCGATATTTTCTGgcgtaagtcccgactaaccaaaatc
gi|49078 : CAGGAG-CC-GATT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CGGCG-TAAC-TTT-A--CGC
gi|49079 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG--A--G-ACTT-A-CG-C-C--C-----TAAT-TTTAA--GGCTA-----TAGAG-GGC-TTAGG-CC-AAAATAT--Aagacgtaagtcccggactaacacaaaat
gi|49080 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAAC-TTT-A--CGCCAG--aaa
gi|49081 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAAC-TTT-A--CGCCAG--acgtaagtcgcggataacacaaa
gi|49082 : CAGTGG-CC-TGTT-T--CAT--C-GAA-GGTCGT-A--acgtaagtcgcggataacacaaa
gi|49083 : CAGGA-----TGTT-TTTCAT--C-AAA-GGT-G----------T-A-CG-C-CAGCG----TAAT-TTT-A--CGCCAG--cgcctggcgtaactcctggacttacataaaat
gi|49084 : CAGGAG-C--TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG---C--C-----TAAA-TTA-A--GGCTAgcgtaagtccggactacacaaa
gi|49085 : CAGAAG-CC-TGTT-T--CAT--C-AAA-GAGCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCCAG--cgctttcaagcaggcct
gi|49086 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--
gi|49087 : GGAG-CC-GGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49088 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49089 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAAC-TTT-A--CGCCAG--
gi|49090 : GGAG-CC-TGTT----CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49091 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTC-GGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49092 : GGAG-C--TGTT-T--CAT--CCAAA-GGTCGT-A-----------CG-C-C--AGG---TAAC-TTT-A--CGCCAG--
gi|49093 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-C--C-C--C-----TGAT-TTA-A--GGCCAG--T-GAGAG-GGC-CTACG-CC-AATA-TT--AGTTGGGCG-TATTTTCTGgcgtaagtcccggactacacaaaatc
gi|49094 : GGAG-CC-TATT-T--CAT--C-AAA-GGTCGTAA--G-ACTT---CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CCAAATATTT--AGTC-GGCG-TATTTTCTG
gi|49095 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49096 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49097 : GGAG-CC-TGTT-T--CAT--C-AAAAGGTCGT-A--G-ACTTTA-CG-C-C--------TAA--TTT-AAAGGCTAG--T-CAGAGCGGC-TTACG-CC-AATATTT--AGTCGGGCG-TA-TTTCTG
gi|49098 : GGAG-CC-TGTT-T--CATC-C-AAA-GGTCGT-A--C-AC
gi|49099 : GAG-CCATGTT----CAT--C-AAA-GGTCGT----G-ACTT-A-C--C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AA-ATTT--AGTCGGGCG-GATTTTCTGaccagcgtaacttctacgcacaggcgtaacgtcccggggacgatacacagaat
gi|49100 : GAG-CC--GTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAAGCGTAAC-TTT-A--CGCCAG--
gi|49101 : GAG-GC-T-TT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-T-C--G-----TAAC-TTT-A--CGCCAG--gcgttaagtcccggactacacaaaaatc
gi|49102 : GAG-CC-TGTT-T--CAT--C-CAA-A-TCGT-A--G-ACTT-A-CGCC-C--C-----TAA--TTT-A--AGGCAG--T-CAGGA-GGC-TTACG-CC-AATATTT--AGTCGGGC--TA-TTTCTGgcgtaagctcccggactaaca
gi|49103 : AG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--
gi|49104 : G-CC-TGTT-T--CAT--C-AA--GGTCGT-A--G-ACTT-A-CG-CGC--C-----TA---TTT-A--GGCTAG--TCCAGAG-GGCTTTACGCCC-AATATTTTAAGTCGGGCG-TATTTTCTcgccca
gi|49105 : -CC-TGTT-T--CAT--C-AAA-GGT----------TTT-A-CG-C-C--
gi|49106 : TT-T--CAT--C-AAA-GGTCGT--------T----CG-C-C--CGGCG-TAACTTTT-AC-GGCCAG--aggcgtaagtcccggacttacacaaaatctaagaccactttctg
blockSeqs : G A TT GC TAGGA T T C G AG AAGCG CT A AAG GT C C T C A TA A
blockSeqs : . . T A TACCG . . . . AG AGCG C . AAG . . . . . . . .
blockSeqs : . . . C TACCG . . . . AG AGCG C . CC . . . . . . . .
blockSeqs : . . . . TAAGA . . . . . AGCG C . CG . . . . . . . .
blockSeqs : . . . . TAGA . . . . . AGCG T . C . . . . . . . .
blockSeqs : . . . . TAGA . . . . . GGCG C . C . . . . . . . .
blockSeqs : . . . . TACG . . . . . AGCG T . C . . . . . . . .
blockSeqs : . . . . TAGA . . . . . AGCG C . G . . . . . . . .
blockSeqs : . . . . TAGA . . . . . GGCG C . G . . . . . . . .
blockSeqs : . . . . TAGA . . . . . GG C . C . . . . . . . .
blockSeqs : . . . . TAGA . . . . . G T . G . . . . . . . .
blockSeqs : . . . . TAGA . . . . . G C . C . . . . . . . .
blockSeqs : . . . . TAGA . . . . . G C . G . . . . . . . .
blockSeqs : . . . . TAGA . . . . . . T . C . . . . . . . .
blockSeqs : . . . . TAGA . . . . . . A . G . . . . . . . .
blockSeqs : . . . . TAGA . . . . . . T . C . . . . . . .
blockSeqs : . . . . TAGA . . . . . . C . C .
blockSeqs : . . . . TAGA . . . . . . T . C .
blockSeqs : . . . . TACA . . . . . . T . G .
blockSeqs : . . . . TACG . . . . . . C . G .
blockSeqs : . . . . TAGA . . . . . . C . C .
blockSeqs : . . . . TAGA . . . . . . T . G .
blockSeqs : . . . . AGA . . . . . . C . G .
blockSeqs : . . . . TGA . . . . . . T . C .
blockSeqs : . . . . TA . . . . . . T . C .
blockSeqs : . . . . T . . . . . . T . G .
blockSeqs : . . . . . . . . . . . C . C .
blockSeqs : . . . . . . . . . . . C . G .
blockSeqs : . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . C .
blockSeqs : . . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . G
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons : TAGA**** *****
originalCons : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
finalCons : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGTAGA----CTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Alignments
lowQualScore : 11111111 22222
lowQualScore : 1 1 1 22 33 1 1 77777777 1 1 1 1 44 88888 66 1 777 11 2 2 2 2 2 33 2
lowQualScore : . . . .. .. . . ........ . . . . .. ..... .. . ... .. . . . . . .. .
lowQualScore : 0 0 0 33 33 0 0 99999999 1 1 1 1 33 11111 66 1 111 66 4 4 4 4 4 22 5
consensus : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
Reference ( family-505 ) : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAC-TTT-A--GGCCAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49066 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--
gi|49067 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49068 : CAGGAG-CC-TGTT-T--CAT--G-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49069 : CAGGAG-CC-TG-T-T--CATGCC-AA---GTC-----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49070 : CAGGGG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGggcgtaagtcccggcctaacacaaaatctaagacatttt
gi|49071 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49072 : CAGTGA-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-C-G--T-----TAAC-TTT-A--CGCCA
gi|49073 : CAGGAG-CC-AGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CA-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGcaggcgtaagtcccggactaacacaaaatc
gi|49074 : CAGGAG-CC-TGTTAT--CATA-C-AAA--GTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-AC-CGCCAG--
gi|49075 : CAGGAG-CC-TGTT-TT-CAT--C-AAA-GGTCGT-A--G-ACTT-ATCG-C-C--C-----TAA--TTT-AAAGGCTAAGTT-CAGAG-GGC-TTACG-CC-AATATTT--AGGCGGGGG-TATTTTCTGgcgtaagtcccggactaacacaaaa
gi|49076 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAAC-TTT-A--CGCCAG--
gi|49077 : CAGGAGGCC-TGTT----CAT--C-AAA-GGTCGT-A--GGACTT-G-CG-C-C--C-----TAA--TTA-A--GGCTAG--T-CAGAG-G-C-TTACG-CC-AATATTT--AGTCGGGCGATATTTTCTGgcgtaagtcccgactaaccaaaatc
gi|49078 : CAGGAG-CC-GATT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CGGCG-TAAC-TTT-A--CGC
gi|49079 : CAGGAG-CC-TGTT-T--CAT--C-AAA-GGTCG--A--G-ACTT-A-CG-C-C--C-----TAAT-TTTAA--GGCTA-----TAGAG-GGC-TTAGG-CC-AAAATAT--Aagacgtaagtcccggactaacacaaaat
gi|49080 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAAC-TTT-A--CGCCAG--aaa
gi|49081 : CAGGAG-CC-TGTT-T--CAT----AAA-GGTCGT-ACCG--CTT-C-CG-C-G--T-----AAAC-TTT-A--CGCCAG--acgtaagtcgcggataacacaaa
gi|49082 : CAGTGG-CC-TGTT-T--CAT--C-GAA-GGTCGT-A--acgtaagtcgcggataacacaaa
gi|49083 : CAGGA-----TGTT-TTTCAT--C-AAA-GGT-G----------T-A-CG-C-CAGCG----TAAT-TTT-A--CGCCAG--cgcctggcgtaactcctggacttacataaaat
gi|49084 : CAGGAG-C--TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG---C--C-----TAAA-TTA-A--GGCTAgcgtaagtccggactacacaaa
gi|49085 : CAGAAG-CC-TGTT-T--CAT--C-AAA-GAGCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCCAG--cgctttcaagcaggcct
gi|49086 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--
gi|49087 : GGAG-CC-GGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49088 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTCGGGCG-TATTTTCTG
gi|49089 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-CAGCG----TAAC-TTT-A--CGCCAG--
gi|49090 : GGAG-CC-TGTT----CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAGCG-TAAC-TTT-A--CGCCAG--gcgtaagtcccggactaacacaaaatc
gi|49091 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AATATTT--AGTC-GGCG-TATTTTCTGgcgtaagtcccggactaacacaaaatc
gi|49092 : GGAG-C--TGTT-T--CAT--CCAAA-GGTCGT-A-----------CG-C-C--AGG---TAAC-TTT-A--CGCCAG--
gi|49093 : GGAG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--G-ACTT-A-C--C-C--C-----TGAT-TTA-A--GGCCAG--T-GAGAG-GGC-CTACG-CC-AATA-TT--AGTTGGGCG-TATTTTCTGgcgtaagtcccggactacacaaaatc
gi|49094 : GGAG-CC-TATT-T--CAT--C-AAA-GGTCGTAA--G-ACTT---CG-C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CCAAATATTT--AGTC-GGCG-TATTTTCTG
gi|49095 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49096 : GGA--CC-TGTT-T--CAT--C-AGA-AGTCGT-A--G-ACTT-A-CG-C-C--C-----TAA--TTT-A--GGCTAG--T-CAGA---GC-TTACG-CC-AATATTT--AGTCGGTCG-TATTT
gi|49097 : GGAG-CC-TGTT-T--CAT--C-AAAAGGTCGT-A--G-ACTTTA-CG-C-C--------TAA--TTT-AAAGGCTAG--T-CAGAGCGGC-TTACG-CC-AATATTT--AGTCGGGCG-TA-TTTCTG
gi|49098 : GGAG-CC-TGTT-T--CATC-C-AAA-GGTCGT-A--C-AC
gi|49099 : GAG-CCATGTT----CAT--C-AAA-GGTCGT----G-ACTT-A-C--C-C--C-----TAAT-TTA-A--GGCTAG--T-CAGAG-GGC-TTACG-CC-AA-ATTT--AGTCGGGCG-GATTTTCTGaccagcgtaacttctacgcacaggcgtaacgtcccggggacgatacacagaat
gi|49100 : GAG-CC--GTT-T--CAT--C-AAA-GGTCG----------T-A-CG-C-C--CAAGCGTAAC-TTT-A--CGCCAG--
gi|49101 : GAG-GC-T-TT-T--CAT--C-AAA-GGTCGT-A--C-GCCC-A--G-T-C--G-----TAAC-TTT-A--CGCCAG--gcgttaagtcccggactacacaaaaatc
gi|49102 : GAG-CC-TGTT-T--CAT--C-CAA-A-TCGT-A--G-ACTT-A-CGCC-C--C-----TAA--TTT-A--AGGCAG--T-CAGGA-GGC-TTACG-CC-AATATTT--AGTCGGGC--TA-TTTCTGgcgtaagctcccggactaaca
gi|49103 : AG-CC-TGTT-T--CAT--C-AAA-GGTCGT-A--
gi|49104 : G-CC-TGTT-T--CAT--C-AA--GGTCGT-A--G-ACTT-A-CG-CGC--C-----TA---TTT-A--GGCTAG--TCCAGAG-GGCTTTACGCCC-AATATTTTAAGTCGGGCG-TATTTTCTcgccca
gi|49105 : -CC-TGTT-T--CAT--C-AAA-GGT----------TTT-A-CG-C-C--
gi|49106 : TT-T--CAT--C-AAA-GGTCGT--------T----CG-C-C--CGGCG-TAACTTTT-AC-GGCCAG--aggcgtaagtcccggacttacacaaaatctaagaccactttctg