lowQualScore : 111 22222 11111
lowQualScore : 11 1 11 1 000 2222 333 1 6666666666 11 444444 111 1 1 1 2 2 1 1 22 2 11 00000 44 1 2 1 333 2 11 1 1 3 1 99999
lowQualScore : .. . .. . ... .... ... . .......... .. ...... ... . . . . . . . .. . .. ..... .. . . . ... . .. . . . . .....
lowQualScore : 55 1 55 1 444 3333 000 1 1111111111 44 111111 888 1 1 0 1 1 0 0 44 1 44 11111 55 0 1 0 888 1 44 0 1 2 1 44444
consensus : TGATTT--T-TCT--A-TATTTTTT--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GTCG--AN-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AA-CAANTTTTAT
Reference ( gi|48905 ) : TGATTT--T-TCT--A-TATTTTTC--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GTCG--GA-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AA-CAACTTTTAT
gi|48915 : TGATTT--T-TCA--A-TATTTTTC--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TGGAAT-T-GGG--AAAAA-TT--GTCG--AA-AT--TT-A-AG-T---C-AAA--T-TGGG-AA-A-AA-CAAAATTTA
gi|48914 : TGGTTT--T-TCT--A-TATTTTTC--A-C--A---A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GCAG--AA-AT--TT-C-AG-T---C-AAA--A-TGGG-AA-A-AA-CTAATTTTAT
gi|48904 : TGATTT--T-TCT--A-CATTTTTC--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--AAAAA-TT--GTCG--AT-AT--TT-C-AG-T---C-CAA--T-TGGG-AA-C-AATCAAATTT
gi|48911 : TGATTT--T-TCT--A-CATTTTTC--A-C--A---A-AG----------G--TCC------TTTAG-T-GAC-T-T-TGGAAT-T-GGG--AAAAA-TT--GTCA--AC-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AATCAAATTTat
gi|48901 : TGATTT--T-TCT--A-TATTTTTT--A-A--A---A-GGGTTTAAAAGGG--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TT--GTCG--AT-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AATCAA-TTTTATat
gi|48906 : TGATTT--T-TCT--A-TATTTTTT--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-GT--GTCG-----ATA-TT-C-AG-T-----GAA--T-TGGG-AA-A-AATCAATTT
gi|48900 : TGATTT--T-TCT--A-TATTTT-A--A-A--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GG----AAAA-TT--GTCG--AT-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AATCAA-TTTTAT
gi|48910 : TGATTT--T-TCT--A-TATTTTTT--A-A--A---A-GG----------G--TCC------T---G-T-GGC-T-C-TCGAAT-T-GGG--AAAAA-TT--GTTG--AT-AT--TT-C-AG-G---G-AAA--T-TGAG-AA-A-AA-
gi|48902 : TGATTT--T-TCT--A-TATTTTTA--A-T--A---A-GG----------G--TCA------C---G-T-GGT-T-C-TCGAAT-T-GGG--AAAAA-TT--GTCG--GT-TA--TT-C-AC-T---C-AAA--T-TGGG-AA-A-AATCAA-TTTTATttgcaattatat
gi|48908 : TGATTT--T-TGT--A-CATTTTTC--A-T--A---A-GG----------G--TCC------T---G-T-GAC-T-T-TTGAAT-T-GGG--AAAAA-TT--TTTG--AT-AT--TT-C-AG-T---T-AAT--T-TGGG-AA-A-AATCAAATTT
gi|48909 : TGATTT--T-ACT--A-TATTTATT--A-C--A---A-AG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--ACAAA-TT--GTCG--AT-AT--TT-C-AG-T---C-AAAACT-GGGG-AA-A-AT-CAA-TTTTATat
gi|48918 : TGATTT--T--CT--T-TATTTTTC--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-G-TTGAAT-T--TG--AAAAA-TT--GTTG--AA-AT--TT-C-AG-T---C-AAA--T-T-GG-AA-A-AA-CGAATTT
gi|48907 : TGATTT--A-TTT--AATATATTTT--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-A-GGA--AAAAA-TT--GTCG--AT-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AATCTA-TTTTAT
gi|48916 : TGATTT--T-TCT--A-CAATTTTT--A-C--A---A-GG----------G--TCC------T---G-T-G-------TCGAAT-T-GGG--AAAAAATT--GTTG--AC-AT--TT-T-AG-G---C-AAA--T-TGGG-AA-A-AATCAA-TTTTAT
gi|48930 : TGGTTT--T-TCCTAA-TATTTT-C--A-C--A---A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GCAG--AA-AA--TT-CAAG-T---C-AAA--A-TGGG-AA-A-
gi|48919 : TGATTTCTT-TCT--A-CATTTTTT--A-C--A---A-AG----------GGATCC------T---GAT-GGC-T-T-TCGAAT-TTGGG--AAA----T--GTCG--AT-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AT-TAGTTTCTATctaaatttat
gi|48917 : TGATTT--T-TC---A-CATTTTT---A-C--A---A-AGAG--------G--TCC------T---G-T-GGC-T-T-TCGAAT----GG--GAAAA-TT--GTCG--AT-AT--TT-C-AG-T---C-AAA--T-AGGA-AA-A-AT-TAGATTTTAT
gi|48926 : TGACTT--TCTCT--A-TATTTTTT--AGC--A---A-GG----------G--TCC------T---G-T--GC-T-T-TCAAAT-T-GGG---AAAA-TT--GTTGATGA-----TT-C-AG-TG--C---A--T-TGGG-AA-A-AA-TAAGTTT
gi|48923 : TGATTT--T--CT--A-TATTTTT---A-CTAAGCTA-GG----------G--TCCCTCACAT---G-T-GGC-T-T-TCAAAT-T-GG---AAAAA-TT--GCCA--AT-AT--TT-C-AG-T---C-AAA--T-TGGA-AA-A-AA--ATCTTTTATat
gi|48903 : TGATTT--T-TCT--A-TATTTTTA--A-T------A-GG----------G--TAC------C---G-T-GGTAT-C-TCGAATAT-GGG---AAAA-TT--GTCG--GT-ATA-TT-C-AC-T---C-AAA--T-TGGG-AATA-AATCAATTT
gi|48924 : TGATTT--T-TCT--A-TATTTTT---A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TC---------A-AT--TT-T-AT-TA--C-AAA--T-
gi|48913 : TGATTT--T-T-T--A-CATTTTT---A-C--A---A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GTCG-----ATTCTT-C-AG-C------AA--T-TGGG-AATA-AA-
gi|48927 : TGATTT--T-TCT--A-TATTTTT---A-C--------------------------------------T-GGC-T-T-TCTAAT-T-GGG--AAAAA-AT--ATCG--AT-AA--TT-C-AG-T---G-AAA--T-TGGG-AA-A-AA-TAAGTTTTATttagttt
gi|48929 : TGATTT--T-TCT--A-TATTGTTT--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T------------------CG--GA--T--TT-C-AG-T---C-ATA--T-TGGGTAA-A-AT-CTA-TTTTAT
gi|48928 : TGATTT--T-TCT--A-CA-TTTTA--A-C--AG--A-AG----------G--TCC------T---G-T-GGC-TATATCGAA--T-GGG--AAAAA-TG--ATCA--GATAT--TT-C-AG-TGAGC-AAA--TATTGG-AA-A-AA-TTAGTTTTAT
gi|48920 : TGATTT--T-TGT--T-CATTTTTT--A----A---A-GG----------G--TTC------C---T-T-GGC-T-T-TTGTAT-T-GGG--AAACA-TT--GTAG--AC-AT--TT-C-AG-T---C-AAA--C-TGGG-CA-A-AA-
gi|48922 : TGATTT--T-TCT--A-TATTTTTT--A-T--A---A-GG----------G--T-C------T---G-T--GC-T-CGTCCAAG-T-GGGA-AAAAA-AT--GTCG--AT-AT--TT-C-AG-T---TAAAA--T-TGAG-AA-ATGT-CAATTTTtcgatt
gi|48925 : TGATTT--T-T--------TTTTTT--A----A---A-C--------------TCC----------------C-T-T-T-GAAT-T-GGG--AAAAA-TT--AGCG--AC-TT--TT-T-CC-T---C-AAA--T-TGGG-AA-A-AA-TCATTTGTAgt
gi|48933 : GGTTT--T-TGT--A-CAATTTTC--A-T--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-AGG--AAAAA-AT--TTTG--AT-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AATCAAATTT
gi|48934 : ATTT--T-TCT--A-CATTTTT---A-C--A---A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GTCG-----AT--TT-C-AG-T---C-AAA--T-TGGG-AATA-AA-TTAGTTTTATat
gi|48935 : ATTA--T-TTT--A-TACTTTTT--A-T--A---A-GG----------G--TCC------T---G-T-GGC-T-G-TCGAAT-T-GGG--AAAA------------------------AG-T---C-AAA--T-TGGG-GA-A-AATCAA-TGTTAT
gi|48939 : ATAT--T-TCT--A-AATTTTTTTTA-C--A-----GG----------G--TCC------T---G-TGGGC-T-T-TCG-AT-T-GGG---AAAA-TT--GTTG-----ATA-TT-C-AG-T---A-ATA--T-TGGA-AA-A-AA-TAAATT
gi|48912 : ttttctTTT--T-TCT--A-TATTTTTC--A-C--A---A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAGAA-TT--GACG--AA-AT--TT-C-AG-T---C-AAA--T-TGGG-AA-A-AA-CAAATTTTA
gi|48936 : tggtTTT--T-CTT--A-CATGGTTT--A-C--A---AAGG----------G--TCCC-----T---G-T-GGC-T-T-TCGAAT-G-GGGAAAAAAA-CT--GTCG--AT-AT--TT-CGAGTT---C-AAA----TGGG-AA-A-AA-
gi|48937 : TTT--T-TTT--G-TATTATTA--A----A---A-CG----------A--CCA------C---C-T-CCC-T-T-GTGAAT-T-GGG--AAAAAATTAAG-CG--AA-AT--TTTC----C---C-AAA--T-TGGG-AA-A-AA-TCATTTGTAttagttt
gi|48921 : T--T-TC------ATTTTTT--A-A--A---A-GG----------G--TTC------T---T-T-GGC-TTT-TTGTAT-T-GGT--AAACA-TT--GTAT--GACAT--TT-C-AG-T---CGAAA--C-TGGG-CA-A-AA-
gi|48938 : tgtttg---A-GG----------G--GCC------A---G-G-GCC-T-T-TTCAAT-T-GGG--AAAAA-TT--ATCG--AC-AT--TT-G-CT-T---A-AAA--T-TGGG-AA-A-AA-atcgatt
gi|48940 : ttttttaaggtcttaatatc----------G--TCC------A---G-T-----T-T-TCGAAT-T-GGG--AAAAA-CT--GTCG--AT-AT--TT-C-AG-T---C-AAA--T-TGTG-AA-A-AA-TAGATTTTATt
gi|48932 : aaaaaatC-T-T-TTGAAT-T-GGG--AAATA-TT--AGCG--AC-AT--TT-T-TC-T---C-AAA--T-TGGG-AA-A-AA-TAATTT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|48931 ): TGATTTTTTTTGTTTTTTAAACTACCACCCCCTCCCTTTGAATTGGGAAAATTTAGCGACATTTTCCTCAAATTGGGAAAAATCATTTGTA
Alignments
lowQualScore : 11111
lowQualScore : 11 1 11 1 99999 22 1 1 5555555555 11 444444 111 1 1 2 1 2 1 1 33 1 11 1 1 2 1 1 2 1 333 3 1 3 1 11111 1
lowQualScore : .. . .. . ..... .. . . .......... .. ...... ... . . . . . . . .. . .. . . . . . . . ... . . . . ..... .
lowQualScore : 55 1 55 1 00000 66 1 1 9999999999 44 000000 888 0 0 1 0 1 0 0 55 0 44 0 0 1 0 0 1 0 888 1 0 2 1 66666 0
consensus : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AA---TNAATTTTAT
Reference ( family-503 ) : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GANA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AA---CAANTTTTAT
gi|48900 : TGATTT--T-TCT--A-TATTTTA-----A--AA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GG----AAAA-TT--GT-C-GATA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AA---TCAATTTTAT
gi|48901 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GGGTTTAAAAGGG--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TT--GT-C-GATA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AA---TCAATTTTAT
gi|48902 : TGATTT--T-TCT--A-TATTTTT--A--A--TA-A-GG----------G--TCA------C---G-T-GGT-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGTT-A-TTC-AC-T---C-AAAT-TGGGAA-A-AA---TCAATTTTAT
gi|48903 : TGATTT--T-TCT--A-TATTTTT--A--A--T--A-GG----------G--TAC------C---G-T-GGTAT-C-TCGAATAT-GGG---AAAA-TT--GT-C-GGTA-TATTC-AC-T---C-AAAT-TGGGAATA-AAT--CAATTT
gi|48904 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--AAAAA-TT--GT-C-GATA-T-TTC-AG-T---C-CAAT-TGGGAA-C-AAT--CAAATTT
gi|48905 : TGATTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGAA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AA---CAACTTTTATat
gi|48906 : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-GT--GT-C-GATA---TTC-AG-T-----GAAT-TGGGAA-A-AAT--CAATTT
gi|48907 : TGATTT--A-TTT--AATATATTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-A-GGA--AAAAA-TT--GT-C-GATA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AA---TCTATTTTAT
gi|48908 : TGATTT--T-TGT--A-CATTTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GAC-T-T-TTGAAT-T-GGG--AAAAA-TT--TT-T-GATA-T-TTC-AG-T---T-AATT-TGGGAA-A-AAT--CAAATTT
gi|48909 : TGATTT--T-ACT--A-TATTTAT--T--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--ACAAA-TT--GT-C-GATA-T-TTC-AG-T---CAAAAC-TGGGGA-A-AA---TCAATTTTATat
gi|48910 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GG----------G--TCC------T---G-T-GGC-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-T-GATA-T-TTC-AG-G---G-AAAT-TGAGAA-A-AATTGCAAT
gi|48911 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-AG----------G--TCC------TTTAG-T-GAC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-AACA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AAT--CAAATTTatat
gi|48912 : TTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAGAA-TT--GA-C-GAAA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AA---CAAATTTTAat
gi|48913 : tggtTGATTT--T-T-T--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-GATT-C-TTC-AG-C------AAT-TGGGAATA-AA---TTAGTTT
gi|48914 : TGGTTT--T-TCT--A-TATTTTT--C--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAA-T-TTC-AG-T---C-AAAA-TGGGAA-A-AA---CTAATTTTAT
gi|48915 : TGATTT--T-TCA--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-GAAA-T-TTA-AG-T---C-AAAT-TGGGAA-A-AA---CAAAATTTA
gi|48916 : TGATTT--T-TCT--A-CAATTTT--T--A--CA-A-GG----------G--TCC------T---G-T-G-------TCGAAT-T-GGG--AAAAAATT--GT-T-GACA-T-TTT-AG-G---C-AAAT-TGGGAA-A-AA---TCAATTTTAT
gi|48917 : TGATTT--T-TC---A-CATTTTT-----A--CA-A-AGAG--------G--TCC------T---G-T-GGC-T-T-TCGAAT----GG--GAAAA-TT--GT-C-GATA-T-TTC-AG-T---C-AAAT-AGGAAA-A-AT---TAGATTTTAT
gi|48918 : TGATTT--T--CT--T-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-G-TTGAAT-T--TG--AAAAA-TT--GT-T-GAAA-T-TTC-AG-T---C-AAAT-T-GGAA-A-AA---CGAATTT
gi|48919 : TGATTTCTT-TCT--A-CATTTTT--T--A--CA-A-AG----------GGATCC------T---GAT-GGC-T-T-TCGAAT-TTGGG--AAA----T--GT-C-GATA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AT---TAGTTTCTAT
gi|48920 : TGATTT--T-TGT--T-CATTTTT--T--A---A-A-GG----------G--TTC------C---T-T-GGC-T-T-TTGTAT-T-GGG--AAACA-TT--GT-A-GACA-T-TTC-AG-T---C-AAAC-TGGGCA-A-AA---
gi|48921 : T--T-TC------ATTTTT--T--A--AA-A-GG----------G--TTC------T---T-T-GGCTT-T-TTGTAT-T-GGT--AAACA-TT--GTAT-GACA-T-TTC-AG-T---CGAAAC-TGGGCA-A-AA---tcgatt
gi|48922 : tgtttgTGATTT--T-TCT--A-TATTTTT--T--A--TA-A-GG----------G--T-C------T---G-T--GC-T-CGTCCAAG-T-GGGA-AAAAA-AT--GT-C-GATA-T-TTC-AG-T---TAAAAT-TGAGAA-ATGT---CAATTTTatcgatt
gi|48923 : TGATTT--T--CT--A-TATTTTTACT--AAGCT-A-GG----------G--TCCCTCACAT---G-T-GGC-T-T-TCAAAT-T-GG---AAAAA-TT--GC-C-AATA-T-TTC-AG-T---C-AAAT-TGGAAA-A-AA----ATCTTTTATgt
gi|48924 : TGATTT--T-TCT--A-TATTTT---T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TC---------AA-T-TTT-AT-TA--C-AAAT-
gi|48925 : TGATTT--T-T--------TTTTT--T--A---A-A-C--------------TCC----------------C-T-T-T-GAAT-T-GGG--AAAAA-TT--AG-C-GACT-T-TTT-CC-T---C-AAAT-TGGGAA-A-AA---TCATTTGTA
gi|48926 : TGACTT--TCTCT--A-TATTTTT--T--AG-CA-A-GG----------G--TCC------T---G-T--GC-T-T-TCAAAT-T-GGG---AAAA-TT--GT-T-GATG-A-TTC-AG-TG--C---AT-TGGGAA-A-AA---TAAGTTT
gi|48927 : TGATTT--T-TCT--A-TATTTTT-----A--C----------------------------------T-GGC-T-T-TCTAAT-T-GGG--AAAAA-AT--AT-C-GATA-A-TTC-AG-T---G-AAAT-TGGGAA-A-AA---TAAGTTTTATat
gi|48928 : TGATTT--T-TCT--A-CA-TTTT--A--A--CAGA-AG----------G--TCC------T---G-T-GGC-TATATCGAA--T-GGG--AAAAA-TG--AT-CAGATA-T-TTC-AG-TGAGC-AAATATTGGAA-A-AA---TTAGTTTTAT
gi|48929 : TGATTT--T-TCT--A-TATTGTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-CGG--A-------------------T-TTC-AG-T---C-ATAT-TGGGTA-A-AA---TCTATTTTAT
gi|48930 : TGGTTT--T-TCCTAA-TATTTTC-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAA-A-TTCAAG-T---C-AAAA-TGGGAA-A-
gi|48933 : GGTTT--T-TGT--A-CAATTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-AGG--AAAAA-AT--TT-T-GATA-T-TTC-AG-T---C-AAAT-TGGGAA-A-AAT--CAAATTTctaaatttat
gi|48934 : ATTT--T-TCT--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-G--A-T-TTC-AG-T---C-AAAT-TGGGAATA-AA---TTAGTTTTATat
gi|48935 : ATTA--T-TTT--A-TACTTTT--T--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-G-TCGAAT-T-GGG--AAAA----------------------AG-T---C-AAAT-TGGGGA-A-AA---TCAATGTTAT
gi|48936 : TTT--T-CTT--A-CATGGTT--T--A--CA-AAGG----------G--TCCC-----T---G-T-GGC-T-T-TCGAAT-G-GGGAAAAAAA-CT--GT-C-GATA-T-TTCGAGTT---C-AAA--TGGGAA-A-AA---TTAGTTT
gi|48937 : TTT--T-TTT--G-TATTATT-----A--AA-A-CG----------A--CCA------C---C-T-CCC-T-T-GTGAAT-T-GGGA-AAAAA-TTAAG--C-GAAATT-TTC----C---C-AAAT-TGGGAA-A-AA---TCATTTGTA
gi|48938 : -A-GG----------G--GCC------A---G-G-GCC-T-T-TTCAAT-T-GGG--AAAAA-TT--AT-C-GACA-T-TTG-CT-T---A-AAAT-TGGGAA-A-AA---
gi|48939 : ttttttaaggtcttaatatcATAT--T-TCT--A-AATTTTT--TTTA--CA---GG----------G--TCC------T---G-TGGGC-T-T-TCG-AT-T-GGG---AAAA-TT--GT-T-GATA---TTC-AG-T---A-ATAT-TGGAAA-A-AA---TAAATTt
gi|48940 : ttttct----------G--TCC------A---G-T-----T-T-TCGAAT-T-GGG--AAAAA-CT--GT-C-GATA-T-TTC-AG-T---C-AAAT-TGTGAA-A-AA---TAGATTTTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|48931 ): TGATTTTTTTTGTTTTTTAAACTACCACCCCCTCCCTTTGAATTGGGAAAATTTAGCGACATTTTCCTCAAATTGGGAAAAATCATTTGTA
Unaligned ( gi|48932 ): TGATTGTTCTTGTTTTTTTTAAACTACCACTCTTCCTTTTGAATTGGGAAATATTAGCGACATTTTTCTCAAATTGGGAAAAATAATTT
Alignments
lowQualScore : 11 1 11 1 99999 22 1 1 5555555555 11 444444 111 1 1 2 1 2 1 1 22 2 11 1 1 0 1 1 2 1 222 3 1 1 1 3 222 1 1
lowQualScore : .. . .. . ..... .. . . .......... .. ...... ... . . . . . . . .. . .. . . . . . . . ... . . . . . ... . .
lowQualScore : 55 1 55 1 00000 66 1 1 9999999999 44 000000 888 0 0 1 0 1 0 0 44 1 44 1 1 1 1 1 1 0 888 1 0 0 0 1 444 1 1
consensus : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-ATTT-TAT
Reference ( family-503 ) : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--NA-ATTT-TAT
gi|48900 : TGATTT--T-TCT--A-TATTTTA-----A--AA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GG----AAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-ATTT-TAT
gi|48901 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GGGTTTAAAAGGG--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-ATTT-TAT
gi|48902 : TGATTT--T-TCT--A-TATTTTT--A--A--TA-A-GG----------G--TCA------C---G-T-GGT-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGTTA-TT-C-AC-T---C-AAAT-TGG-G-AA-AAAT--CA-ATTT-TAT
gi|48903 : TGATTT--T-TCT--A-TATTTTT--A--A--T--A-GG----------G--TAC------C---G-T-GGTAT-C-TCGAATAT-GGG---AAAA-TT--GT-C-GGTATATT-C-AC-T---C-AAAT-TGG-G-AATAAAT--CA-ATTT-
gi|48904 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-CAAT-TGG-G-AA-CAAT--CA-AATT-TAT
gi|48905 : TGATTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-CTTT-TAT
gi|48906 : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-GT--GT-C-GATA--TT-C-AG-T-----GAAT-TGG-G-AA-AAAT--CA-ATTT-
gi|48907 : TGATTT--A-TTT--AATATATTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-A-GGA--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CT-ATTT-TAT
gi|48908 : TGATTT--T-TGT--A-CATTTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GAC-T-T-TTGAAT-T-GGG--AAAAA-TT--TT-T-GATAT-TT-C-AG-T---T-AATT-TGG-G-AA-AAAT--CA-AATT-TAT
gi|48909 : TGATTT--T-ACT--A-TATTTAT--T--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--ACAAA-TT--GT-C-GATAT-TT-C-AG-T---CAAAAC-TGG-G-GA-AAAT--CA-ATTT-TAT
gi|48910 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GG----------G--TCC------T---G-T-GGC-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-T-GATAT-TT-C-AG-G---G-AAAT-TGA-G-AA-AAATTGCA-ATTA-TAT
gi|48911 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-AG----------G--TCC------TTTAG-T-GAC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-AACAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-AATT-TAT
gi|48912 : TTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAGAA-TT--GA-C-GAAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-ATTT-TA
gi|48913 : tggtTGATTT--T-T-T--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-GATTC-TT-C-AG-C------AAT-TGG-G-AATAAAT--TA-GTTT-
gi|48914 : TGGTTT--T-TCT--A-TATTTTT--C--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAT-TT-C-AG-T---C-AAAA-TGG-G-AA-AAAC--TA-ATTT-TAT
gi|48915 : TGATTT--T-TCA--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-GAAAT-TT-A-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-AATT-TA
gi|48916 : TGATTT--T-TCT--A-CAATTTT--T--A--CA-A-GG----------G--TCC------T---G-T-G-------TCGAAT-T-GGG--AAAAAATT--GT-T-GACAT-TT-T-AG-G---C-AAAT-TGG-G-AA-AAAT--CA-ATTT-TAT
gi|48917 : TGATTT--T-TC---A-CATTTTT-----A--CA-A-AGAG--------G--TCC------T---G-T-GGC-T-T-TCGAAT----GG--GAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAA--TAG-G-AA-AAAT--TAGATTT-TAT
gi|48918 : TGATTT--T--CT--T-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-G-TTGAAT-T--TG--AAAAA-TT--GT-T-GAAAT-TT-C-AG-T---C-AAAT-T-G-G-AA-AAAC--GA-ATTT-
gi|48919 : TGATTTCTT-TCT--A-CATTTTT--T--A--CA-A-AG----------GGATCC------T---GAT-GGC-T-T-TCGAAT-TTGGG--AAA----T--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G--A-AAAT--TA-GTTTCTAT
gi|48920 : TGATTT--T-TGT--T-CATTTTT--T--A---A-A-GG----------G--TTC------C---T-T-GGC-T-T-TTGTAT-T-GGG--AAACA-TT--GT-A-GACAT-TT-C-AG-T---C-AAAC-TGG-G-CA-AAAT--CG-ATT
gi|48921 : T--T-TC------ATTTTT--T--A--AA-A-GG----------G--TTC------T---T-T-GGCTT-T-TTGTAT-T-GGT--AAACA-TT--GTAT-GACAT-TT-C-AG-T---CGAAAC-TGG-GCAA-AAAT--CG-ATT
gi|48922 : tgtttgTGATTT--T-TCT--A-TATTTTT--T--A--TA-A-GG----------G--T-C------T---G-T--GC-T-CGTCCAAG-T-GGGA-AAAAA-AT--GT-C-GATAT-TT-C-AG-T---TAAAAT-TGA-G-AA-ATGT--CA-ATTT-TGT
gi|48923 : TGATTT--T--CT--A-TATTTTTACT--AAGCT-A-GG----------G--TCCCTCACAT---G-T-GGC-T-T-TCAAAT-T-GG---AAAAA-TT--GC-C-AATAT-TT-C-AG-T---C-AAAT-TGGAA-AA-AAAT--C---TTT-TAT
gi|48924 : TGATTT--T-TCT--A-TATTTT---T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-T
gi|48924 : -T---C-AAAT-TGG-G-AA-AAAT--CA-ATTT-TATcaattttattacaaat
gi|48925 : tgatttttctatatttttacaagggtcctgtggcttTGATTT--T-T--------TTTTT--T--A---A-A-C--------------TCC----------------C-T-T-T-GAAT-T-GGG--AAAAA-TT--AG-C-GACTT-TT-T-CC-T---C-AAAT-TGG-G-AA-AAAT--CA-TTTG-TAtacaaat
gi|48926 : TGACTT--TCTCT--A-TATTTTT--T--AG-CA-A-GG----------G--TCC------T---G-T--GC-T-T-TCAAAT-T-GGG---AAAA-TT--GT-T-GATGA-TT-C-AG-TG--C---AT-TGG-G-AA-AAAT--AA-GTTT-
gi|48927 : TGATTT--T-TCT--A-TATTTTT-----A--C----------------------------------T-GGC-T-T-TCTAAT-T-GGG--AAAAA-AT--AT-C-GATAA-TT-C-AG-T---G-AAAT-TGG-G-AA-AAAT--AA-GTTT-TATat
gi|48928 : TGATTT--T-TCT--A-CA-TTTT--A--A--CAGA-AG----------G--TCC------T---G-T-GGC-TATATCGAA--T-GGG--AAAAA-TG--AT-CAGATAT-TT-C-AG-TGAGC-AAATATTG-G-AA-AAAT--TA-GTTT-TAT
gi|48929 : TGATTT--T-TCT--A-TATTGTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-CGG--A------------------T-TT-C-AG-T---C-ATAT-TGG-G-TA-AAAT--CT-ATTT-TAT
gi|48930 : TGGTTT--T-TCCTAA-TATTTTC-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAA-TT-CAAG-T---C-AAAA-TGG-G--A-AACT--AA-ATTT-
gi|48933 : GGTTT--T-TGT--A-CAATTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-AGG--AAAAA-AT--TT-T-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-AATT-TATat
gi|48934 : ATTT--T-TCT--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-G--AT-TT-C-AG-T---C-AAAT-TGG-G-AATAAAT--TA-GTTT-TAT
gi|48935 : ATTA--T-TTT--A-TACTTTT--T--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-G-TCGAAT-T-GGG--AAAA----------------------AG-T---C-AAAT-TGG-G-GA-AAAT--CA-ATGT-TAT
gi|48936 : TTT--T-CTT--A-CATGGTT--T--A--CA-AAGG----------G--TCCC-----T---G-T-GGC-T-T-TCGAAT-G-GGGAAAAAAA-CT--GT-C-GATAT-TT-CGAGTT---C-AAA--TGG-G-AA-AAAT--TA-GTTT-
gi|48937 : TTT--T-TTT--G-TATTATT-----A--AA-A-CG----------A--CCA------C---C-T-CCC-T-T-GTGAAT-T-GGG--AAAAAATTAAG--C-GAAAT-TTTC----C---C-AAAT-TGG-G-AA-AAAT--CA-TTTG-TA
gi|48938 : -A-GG----------G--GCC------A---G-G-GCC-T-T-TTCAAT-T-GGG--AAAAA-TT--AT-C-GACAT-TT-G-CT-T---A-AAAT-TGG-G-AA-AAAT--
gi|48939 : ttttttaaggtcttaatatcATAT--T-TCT--A-AATTTTT--TTTA--CA---GG----------G--TCC------T---G-TGGGC-T-T-TCG-AT-T-GGG---AAAA-TT--GT-T-GATA--TT-C-AG-T---A-ATAT-TGG-A-AA-AAAT--AA-ATT
gi|48940 : ttttct----------G--TCC------A---G-T-----T-T-TCGAAT-T-GGG--AAAAA-CT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGT-G-AA-AAAT--AG-ATTT-TAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|48931 ): TGATTTTTTTTGTTTTTTAAACTACCACCCCCTCCCTTTGAATTGGGAAAATTTAGCGACATTTTCCTCAAATTGGGAAAAATCATTTGTA
Unaligned ( gi|48932 ): TGATTGTTCTTGTTTTTTTTAAACTACCACTCTTCCTTTTGAATTGGGAAATATTAGCGACATTTTTCTCAAATTGGGAAAAATAATTT
Alignments
lowQualScore : 11 1 11 1 99999 22 1 1 5555555555 11 444444 111 1 1 2 1 2 1 1 22 2 11 1 1 0 1 1 2 1 222 3 1 1 1 3 11 1 1 1
lowQualScore : .. . .. . ..... .. . . .......... .. ...... ... . . . . . . . .. . .. . . . . . . . ... . . . . . .. . . .
lowQualScore : 55 1 55 1 00000 66 1 1 9999999999 44 000000 888 0 0 1 0 1 0 0 44 1 44 1 1 1 1 1 1 0 888 1 0 0 0 1 44 1 1 1
consensus : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
Reference ( family-503 ) : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48900 : TGATTT--T-TCT--A-TATTTTA-----A--AA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GG----AAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48901 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GGGTTTAAAAGGG--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48902 : TGATTT--T-TCT--A-TATTTTT--A--A--TA-A-GG----------G--TCA------C---G-T-GGT-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGTTA-TT-C-AC-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48903 : TGATTT--T-TCT--A-TATTTTT--A--A--T--A-GG----------G--TAC------C---G-T-GGTAT-C-TCGAATAT-GGG---AAAA-TT--GT-C-GGTATATT-C-AC-T---C-AAAT-TGG-G-AATAAAT--CA-A-TTT-
gi|48904 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-CAAT-TGG-G-AA-CAAT--CA-A-ATT-TAT
gi|48905 : TGATTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAA---CA-ACTTT-TAT
gi|48906 : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-GT--GT-C-GATA--TT-C-AG-T-----GAAT-TGG-G-AA-AAAT--CA-A-TTT-
gi|48907 : TGATTT--A-TTT--AATATATTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-A-GGA--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CT-A-TTT-TAT
gi|48908 : TGATTT--T-TGT--A-CATTTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GAC-T-T-TTGAAT-T-GGG--AAAAA-TT--TT-T-GATAT-TT-C-AG-T---T-AATT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48909 : TGATTT--T-ACT--A-TATTTAT--T--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--ACAAA-TT--GT-C-GATAT-TT-C-AG-T---CAAAAC-TGG-G-GA-AAAT--CA-A-TTT-TAT
gi|48910 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GG----------G--TCC------T---G-T-GGC-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-T-GATAT-TT-C-AG-G---G-AAAT-TGA-G-AA-AAATTGCA-A-TTA-TAT
gi|48911 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-AG----------G--TCC------TTTAG-T-GAC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-AACAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48912 : TTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAGAA-TT--GA-C-GAAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-A-TTT-TA
gi|48913 : tggtTGATTT--T-T-T--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-GATTC-TT-C-AG-C------AAT-TGG-G-AATAAAT--TA-G-TTT-
gi|48914 : TGGTTT--T-TCT--A-TATTTTT--C--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAT-TT-C-AG-T---C-AAAA-TGG-G-AA-AAAC--TA-A-TTT-TAT
gi|48915 : TGATTT--T-TCA--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-GAAAT-TT-A-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-A-ATT-TA
gi|48916 : TGATTT--T-TCT--A-CAATTTT--T--A--CA-A-GG----------G--TCC------T---G-T-G-------TCGAAT-T-GGG--AAAAAATT--GT-T-GACAT-TT-T-AG-G---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48917 : TGATTT--T-TC---A-CATTTTT-----A--CA-A-AGAG--------G--TCC------T---G-T-GGC-T-T-TCGAAT----GG--GAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAA--TAG-G-AA-AAAT--TAGA-TTT-TAT
gi|48918 : TGATTT--T--CT--T-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-G-TTGAAT-T--TG--AAAAA-TT--GT-T-GAAAT-TT-C-AG-T---C-AAAT-T-G-G-AA-AAAC--GA-A-TTT-
gi|48919 : TGATTTCTT-TCT--A-CATTTTT--T--A--CA-A-AG----------GGATCC------T---GAT-GGC-T-T-TCGAAT-TTGGG--AAA----T--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G--A-AAAT--TA-G-TTTCTAT
gi|48920 : TGATTT--T-TGT--T-CATTTTT--T--A---A-A-GG----------G--TTC------C---T-T-GGC-T-T-TTGTAT-T-GGG--AAACA-TT--GT-A-GACAT-TT-C-AG-T---C-AAAC-TGG-G-CA-AAAT--CG-A-TT
gi|48921 : T--T-TC------ATTTTT--T--A--AA-A-GG----------G--TTC------T---T-T-GGCTT-T-TTGTAT-T-GGT--AAACA-TT--GTAT-GACAT-TT-C-AG-T---CGAAAC-TGG-GCAA-AAAT--CG-A-TT
gi|48922 : tgtttgTGATTT--T-TCT--A-TATTTTT--T--A--TA-A-GG----------G--T-C------T---G-T--GC-T-CGTCCAAG-T-GGGA-AAAAA-AT--GT-C-GATAT-TT-C-AG-T---TAAAAT-TGA-G-AA-ATGT--CA-A-TTT-TGT
gi|48923 : TGATTT--T--CT--A-TATTTTTACT--AAGCT-A-GG----------G--TCCCTCACAT---G-T-GGC-T-T-TCAAAT-T-GG---AAAAA-TT--GC-C-AATAT-TT-C-AG-T---C-AAAT-TGGAA-AA-AAAT--C----TTT-TAT
gi|48924 : TGATTT--T-TCT--A-TATTTT---T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-T
gi|48924 : -T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TATcaattttattacaaat
gi|48925 : tgatttttctatatttttacaagggtcctgtggcttTGATTT--T-T--------TTTTT--T--A---A-A-C--------------TCC----------------C-T-T-T-GAAT-T-GGG--AAAAA-TT--AG-C-GACTT-TT-T-CC-T---C-AAAT-TGG-G-AA-AAAT--CA-T-TTG-TAtacaaat
gi|48926 : TGACTT--TCTCT--A-TATTTTT--T--AG-CA-A-GG----------G--TCC------T---G-T--GC-T-T-TCAAAT-T-GGG---AAAA-TT--GT-T-GATGA-TT-C-AG-TG--C---AT-TGG-G-AA-AAAT---A-A-GTT-TAT
gi|48927 : TGATTT--T-TCT--A-TATTTTT-----A--C----------------------------------T-GGC-T-T-TCTAAT-T-GGG--AAAAA-AT--AT-C-GATAA-TT-C-AG-T---G-AAAT-TGG-G-AA-AAAT--AA-G-TTT-TAT
gi|48928 : TGATTT--T-TCT--A-CA-TTTT--A--A--CAGA-AG----------G--TCC------T---G-T-GGC-TATATCGAA--T-GGG--AAAAA-TG--AT-CAGATAT-TT-C-AG-TGAGC-AAATATTG-G-AA-AAAT--TA-G-TTT-TAT
gi|48929 : TGATTT--T-TCT--A-TATTGTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-CGG--A------------------T-TT-C-AG-T---C-ATAT-TGG-G-TA-AAAT--CT-A-TTT-TAT
gi|48930 : TGGTTT--T-TCCTAA-TATTTTC-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAA-TT-CAAG-T---C-AAAA-TGG-G----AAAC--TA-A-ATT-TAT
gi|48933 : GGTTT--T-TGT--A-CAATTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-AGG--AAAAA-AT--TT-T-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48934 : ATTT--T-TCT--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-G--AT-TT-C-AG-T---C-AAAT-TGG-G-AATAAAT--TA-G-TTT-TAT
gi|48935 : ATTA--T-TTT--A-TACTTTT--T--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-G-TCGAAT-T-GGG--AAAA----------------------AG-T---C-AAAT-TGG-G-GA-AAAT--CA-A-TGT-TAT
gi|48936 : TTT--T-CTT--A-CATGGTT--T--A--CA-AAGG----------G--TCCC-----T---G-T-GGC-T-T-TCGAAT-G-GGGAAAAAAA-CT--GT-C-GATAT-TT-CGAGTT---C-AAA--TGG-G-AA-AAAT--TA-G-TTT-
gi|48937 : TTT--T-TTT--G-TATTATT-----A--AA-A-CG----------A--CCA------C---C-T-CCC-T-T-GTGAAT-T-GGG--AAAAAATTAAG--C-GAAAT-TTTC----C---C-AAAT-TGG-G-AA-AAAT--CA-T-TTG-TA
gi|48938 : -A-GG----------G--GCC------A---G-G-GCC-T-T-TTCAAT-T-GGG--AAAAA-TT--AT-C-GACAT-TT-G-CT-T---A-AAAT-TGG-G-AA-AAAT--
gi|48939 : ttttttaaggtcttaatatcATAT--T-TCT--A-AATTTTT--TTTA--CA---GG----------G--TCC------T---G-TGGGC-T-T-TCG-AT-T-GGG---AAAA-TT--GT-T-GATA--TT-C-AG-T---A-ATAT-TGG-A-AA-AAAT--AA-A-TT
gi|48940 : ttttct----------G--TCC------A---G-T-----T-T-TCGAAT-T-GGG--AAAAA-CT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGT-G-AA-AAAT--AG-A-TTT-TAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|48931 ): TGATTTTTTTTGTTTTTTAAACTACCACCCCCTCCCTTTGAATTGGGAAAATTTAGCGACATTTTCCTCAAATTGGGAAAAATCATTTGTA
Unaligned ( gi|48932 ): TGATTGTTCTTGTTTTTTTTAAACTACCACTCTTCCTTTTGAATTGGGAAATATTAGCGACATTTTTCTCAAATTGGGAAAAATAATTT
Alignments
lowQualScore : 11 1 11 1 99999 22 1 1 5555555555 11 444444 111 1 1 2 1 2 1 1 22 2 11 1 1 0 1 1 2 1 222 3 1 1 1 3 11 1 1 1
lowQualScore : .. . .. . ..... .. . . .......... .. ...... ... . . . . . . . .. . .. . . . . . . . ... . . . . . .. . . .
lowQualScore : 55 1 55 1 00000 66 1 1 9999999999 44 000000 888 0 0 1 0 1 0 0 44 1 44 1 1 1 1 1 1 0 888 1 0 0 0 1 44 1 1 1
consensus : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
Reference ( family-503 ) : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48900 : TGATTT--T-TCT--A-TATTTTA-----A--AA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GG----AAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48901 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GGGTTTAAAAGGG--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48902 : TGATTT--T-TCT--A-TATTTTT--A--A--TA-A-GG----------G--TCA------C---G-T-GGT-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGTTA-TT-C-AC-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48903 : TGATTT--T-TCT--A-TATTTTT--A--A--T--A-GG----------G--TAC------C---G-T-GGTAT-C-TCGAATAT-GGG---AAAA-TT--GT-C-GGTATATT-C-AC-T---C-AAAT-TGG-G-AATAAAT--CA-A-TTT-
gi|48904 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-CAAT-TGG-G-AA-CAAT--CA-A-ATT-TAT
gi|48905 : TGATTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAA---CA-ACTTT-TAT
gi|48906 : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-GT--GT-C-GATA--TT-C-AG-T-----GAAT-TGG-G-AA-AAAT--CA-A-TTT-
gi|48907 : TGATTT--A-TTT--AATATATTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-A-GGA--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CT-A-TTT-TAT
gi|48908 : TGATTT--T-TGT--A-CATTTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GAC-T-T-TTGAAT-T-GGG--AAAAA-TT--TT-T-GATAT-TT-C-AG-T---T-AATT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48909 : TGATTT--T-ACT--A-TATTTAT--T--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--ACAAA-TT--GT-C-GATAT-TT-C-AG-T---CAAAAC-TGG-G-GA-AAAT--CA-A-TTT-TAT
gi|48910 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GG----------G--TCC------T---G-T-GGC-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-T-GATAT-TT-C-AG-G---G-AAAT-TGA-G-AA-AAATTGCA-A-TTA-TAT
gi|48911 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-AG----------G--TCC------TTTAG-T-GAC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-AACAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48912 : TTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAGAA-TT--GA-C-GAAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-A-TTT-TA
gi|48913 : tggtTGATTT--T-T-T--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-GATTC-TT-C-AG-C------AAT-TGG-G-AATAAAT--TA-G-TTT-
gi|48914 : TGGTTT--T-TCT--A-TATTTTT--C--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAT-TT-C-AG-T---C-AAAA-TGG-G-AA-AAAC--TA-A-TTT-TAT
gi|48915 : TGATTT--T-TCA--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-GAAAT-TT-A-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-A-ATT-TA
gi|48916 : TGATTT--T-TCT--A-CAATTTT--T--A--CA-A-GG----------G--TCC------T---G-T-G-------TCGAAT-T-GGG--AAAAAATT--GT-T-GACAT-TT-T-AG-G---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48917 : TGATTT--T-TC---A-CATTTTT-----A--CA-A-AGAG--------G--TCC------T---G-T-GGC-T-T-TCGAAT----GG--GAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAA--TAG-G-AA-AAAT--TAGA-TTT-TAT
gi|48918 : TGATTT--T--CT--T-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-G-TTGAAT-T--TG--AAAAA-TT--GT-T-GAAAT-TT-C-AG-T---C-AAAT-T-G-G-AA-AAAC--GA-A-TTT-
gi|48919 : TGATTTCTT-TCT--A-CATTTTT--T--A--CA-A-AG----------GGATCC------T---GAT-GGC-T-T-TCGAAT-TTGGG--AAA----T--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G--A-AAAT--TA-G-TTTCTAT
gi|48920 : TGATTT--T-TGT--T-CATTTTT--T--A---A-A-GG----------G--TTC------C---T-T-GGC-T-T-TTGTAT-T-GGG--AAACA-TT--GT-A-GACAT-TT-C-AG-T---C-AAAC-TGG-G-CA-AAAT--CG-A-TT
gi|48921 : T--T-TC------ATTTTT--T--A--AA-A-GG----------G--TTC------T---T-T-GGCTT-T-TTGTAT-T-GGT--AAACA-TT--GTAT-GACAT-TT-C-AG-T---CGAAAC-TGG-GCAA-AAAT--CG-A-TT
gi|48922 : tgtttgTGATTT--T-TCT--A-TATTTTT--T--A--TA-A-GG----------G--T-C------T---G-T--GC-T-CGTCCAAG-T-GGGA-AAAAA-AT--GT-C-GATAT-TT-C-AG-T---TAAAAT-TGA-G-AA-ATGT--CA-A-TTT-TGT
gi|48923 : TGATTT--T--CT--A-TATTTTTACT--AAGCT-A-GG----------G--TCCCTCACAT---G-T-GGC-T-T-TCAAAT-T-GG---AAAAA-TT--GC-C-AATAT-TT-C-AG-T---C-AAAT-TGGAA-AA-AAAT--C----TTT-TAT
gi|48924 : TGATTT--T-TCT--A-TATTTT---T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-T
gi|48924 : -T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TATcaattttattacaaat
gi|48925 : tgatttttctatatttttacaagggtcctgtggcttTGATTT--T-T--------TTTTT--T--A---A-A-C--------------TCC----------------C-T-T-T-GAAT-T-GGG--AAAAA-TT--AG-C-GACTT-TT-T-CC-T---C-AAAT-TGG-G-AA-AAAT--CA-T-TTG-TAtacaaat
gi|48926 : TGACTT--TCTCT--A-TATTTTT--T--AG-CA-A-GG----------G--TCC------T---G-T--GC-T-T-TCAAAT-T-GGG---AAAA-TT--GT-T-GATGA-TT-C-AG-TG--C---AT-TGG-G-AA-AAAT---A-A-GTT-TAT
gi|48927 : TGATTT--T-TCT--A-TATTTTT-----A--C----------------------------------T-GGC-T-T-TCTAAT-T-GGG--AAAAA-AT--AT-C-GATAA-TT-C-AG-T---G-AAAT-TGG-G-AA-AAAT--AA-G-TTT-TAT
gi|48928 : TGATTT--T-TCT--A-CA-TTTT--A--A--CAGA-AG----------G--TCC------T---G-T-GGC-TATATCGAA--T-GGG--AAAAA-TG--AT-CAGATAT-TT-C-AG-TGAGC-AAATATTG-G-AA-AAAT--TA-G-TTT-TAT
gi|48929 : TGATTT--T-TCT--A-TATTGTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-CGG--A------------------T-TT-C-AG-T---C-ATAT-TGG-G-TA-AAAT--CT-A-TTT-TAT
gi|48930 : TGGTTT--T-TCCTAA-TATTTTC-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAA-TT-CAAG-T---C-AAAA-TGG-G----AAAC--TA-A-ATT-TAT
gi|48933 : GGTTT--T-TGT--A-CAATTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-AGG--AAAAA-AT--TT-T-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48934 : ATTT--T-TCT--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-G--AT-TT-C-AG-T---C-AAAT-TGG-G-AATAAAT--TA-G-TTT-TAT
gi|48935 : ATTA--T-TTT--A-TACTTTT--T--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-G-TCGAAT-T-GGG--AAAA----------------------AG-T---C-AAAT-TGG-G-GA-AAAT--CA-A-TGT-TAT
gi|48936 : TTT--T-CTT--A-CATGGTT--T--A--CA-AAGG----------G--TCCC-----T---G-T-GGC-T-T-TCGAAT-G-GGGAAAAAAA-CT--GT-C-GATAT-TT-CGAGTT---C-AAA--TGG-G-AA-AAAT--TA-G-TTT-
gi|48937 : TTT--T-TTT--G-TATTATT-----A--AA-A-CG----------A--CCA------C---C-T-CCC-T-T-GTGAAT-T-GGG--AAAAAATTAAG--C-GAAAT-TTTC----C---C-AAAT-TGG-G-AA-AAAT--CA-T-TTG-TA
gi|48938 : -A-GG----------G--GCC------A---G-G-GCC-T-T-TTCAAT-T-GGG--AAAAA-TT--AT-C-GACAT-TT-G-CT-T---A-AAAT-TGG-G-AA-AAAT--
gi|48939 : ttttttaaggtcttaatatcATAT--T-TCT--A-AATTTTT--TTTA--CA---GG----------G--TCC------T---G-TGGGC-T-T-TCG-AT-T-GGG---AAAA-TT--GT-T-GATA--TT-C-AG-T---A-ATAT-TGG-A-AA-AAAT--AA-A-TT
gi|48940 : ttttct----------G--TCC------A---G-T-----T-T-TCGAAT-T-GGG--AAAAA-CT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGT-G-AA-AAAT--AG-A-TTT-TAT
blockSeqs : CT C TA A ACT AG G A GTTTAAAAGG GA CTCACA TTA A G A A G A T AA A AA A A A T A T GAG A A A C T TG G C C
blockSeqs : . . . . TTT G . . AG . C . . . T . A . . A A . . . . . G . G G . . . T . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . A . . . T . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : T****
originalCons : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
finalCons : TGATTT--T-TCT--A-TATTTTTT----A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|48931 ): TGATTTTTTTTGTTTTTTAAACTACCACCCCCTCCCTTTGAATTGGGAAAATTTAGCGACATTTTCCTCAAATTGGGAAAAATCATTTGTA
Unaligned ( gi|48932 ): TGATTGTTCTTGTTTTTTTTAAACTACCACTCTTCCTTTTGAATTGGGAAATATTAGCGACATTTTTCTCAAATTGGGAAAAATAATTT
Alignments
lowQualScore : 11 1 11 1 99999 22 1 1 5555555555 11 444444 111 1 1 2 1 2 1 1 22 2 11 1 1 0 1 1 2 1 222 3 1 1 1 3 11 1 1 1
lowQualScore : .. . .. . ..... .. . . .......... .. ...... ... . . . . . . . .. . .. . . . . . . . ... . . . . . .. . . .
lowQualScore : 55 1 55 1 00000 66 1 1 9999999999 44 000000 888 0 0 1 0 1 0 0 44 1 44 1 1 1 1 1 1 0 888 1 0 0 0 1 44 1 1 1
consensus : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
Reference ( family-503 ) : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48900 : TGATTT--T-TCT--A-TATTTTA-----A--AA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GG----AAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48901 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GGGTTTAAAAGGG--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48902 : TGATTT--T-TCT--A-TATTTTT--A--A--TA-A-GG----------G--TCA------C---G-T-GGT-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGTTA-TT-C-AC-T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48903 : TGATTT--T-TCT--A-TATTTTT--A--A--T--A-GG----------G--TAC------C---G-T-GGTAT-C-TCGAATAT-GGG---AAAA-TT--GT-C-GGTATATT-C-AC-T---C-AAAT-TGG-G-AATAAAT--CA-A-TTT-
gi|48904 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-CAAT-TGG-G-AA-CAAT--CA-A-ATT-TAT
gi|48905 : TGATTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GT-C-GGAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAA---CA-ACTTT-TAT
gi|48906 : TGATTT--T-TCT--A-TATTTTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-GT--GT-C-GATA--TT-C-AG-T-----GAAT-TGG-G-AA-AAAT--CA-A-TTT-
gi|48907 : TGATTT--A-TTT--AATATATTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-A-GGA--AAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CT-A-TTT-TAT
gi|48908 : TGATTT--T-TGT--A-CATTTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GAC-T-T-TTGAAT-T-GGG--AAAAA-TT--TT-T-GATAT-TT-C-AG-T---T-AATT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48909 : TGATTT--T-ACT--A-TATTTAT--T--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-GGG--ACAAA-TT--GT-C-GATAT-TT-C-AG-T---CAAAAC-TGG-G-GA-AAAT--CA-A-TTT-TAT
gi|48910 : TGATTT--T-TCT--A-TATTTTT--T--A--AA-A-GG----------G--TCC------T---G-T-GGC-T-C-TCGAAT-T-GGG--AAAAA-TT--GT-T-GATAT-TT-C-AG-G---G-AAAT-TGA-G-AA-AAATTGCA-A-TTA-TAT
gi|48911 : TGATTT--T-TCT--A-CATTTTT--C--A--CA-A-AG----------G--TCC------TTTAG-T-GAC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-AACAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48912 : TTT--T-TCT--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAGAA-TT--GA-C-GAAAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-A-TTT-TA
gi|48913 : tggtTGATTT--T-T-T--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-GATTC-TT-C-AG-C------AAT-TGG-G-AATAAAT--TA-G-TTT-
gi|48914 : TGGTTT--T-TCT--A-TATTTTT--C--A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAT-TT-C-AG-T---C-AAAA-TGG-G-AA-AAAC--TA-A-TTT-TAT
gi|48915 : TGATTT--T-TCA--A-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TGGAAT-T-GGG--AAAAA-TT--GT-C-GAAAT-TT-A-AG-T---C-AAAT-TGG-G-AA-AAAC--AA-A-ATT-TA
gi|48916 : TGATTT--T-TCT--A-CAATTTT--T--A--CA-A-GG----------G--TCC------T---G-T-G-------TCGAAT-T-GGG--AAAAAATT--GT-T-GACAT-TT-T-AG-G---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TAT
gi|48917 : TGATTT--T-TC---A-CATTTTT-----A--CA-A-AGAG--------G--TCC------T---G-T-GGC-T-T-TCGAAT----GG--GAAAA-TT--GT-C-GATAT-TT-C-AG-T---C-AAA--TAG-G-AA-AAAT--TAGA-TTT-TAT
gi|48918 : TGATTT--T--CT--T-TATTTTT--C--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-G-TTGAAT-T--TG--AAAAA-TT--GT-T-GAAAT-TT-C-AG-T---C-AAAT-T-G-G-AA-AAAC--GA-A-TTT-
gi|48919 : TGATTTCTT-TCT--A-CATTTTT--T--A--CA-A-AG----------GGATCC------T---GAT-GGC-T-T-TCGAAT-TTGGG--AAA----T--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGG-G--A-AAAT--TA-G-TTTCTAT
gi|48920 : TGATTT--T-TGT--T-CATTTTT--T--A---A-A-GG----------G--TTC------C---T-T-GGC-T-T-TTGTAT-T-GGG--AAACA-TT--GT-A-GACAT-TT-C-AG-T---C-AAAC-TGG-G-CA-AAAT--CG-A-TT
gi|48921 : T--T-TC------ATTTTT--T--A--AA-A-GG----------G--TTC------T---T-T-GGCTT-T-TTGTAT-T-GGT--AAACA-TT--GTAT-GACAT-TT-C-AG-T---CGAAAC-TGG-GCAA-AAAT--CG-A-TT
gi|48922 : tgtttgTGATTT--T-TCT--A-TATTTTT--T--A--TA-A-GG----------G--T-C------T---G-T--GC-T-CGTCCAAG-T-GGGA-AAAAA-AT--GT-C-GATAT-TT-C-AG-T---TAAAAT-TGA-G-AA-ATGT--CA-A-TTT-TGT
gi|48923 : TGATTT--T--CT--A-TATTTTTACT--AAGCT-A-GG----------G--TCCCTCACAT---G-T-GGC-T-T-TCAAAT-T-GG---AAAAA-TT--GC-C-AATAT-TT-C-AG-T---C-AAAT-TGGAA-AA-AAAT--C----TTT-TAT
gi|48924 : TGATTT--T-TCT--A-TATTTT---T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-GGG--AAAAA-T
gi|48924 : -T---C-AAAT-TGG-G-AA-AAAT--CA-A-TTT-TATcaattttattacaaat
gi|48925 : tgatttttctatatttttacaagggtcctgtggcttTGATTT--T-T--------TTTTT--T--A---A-A-C--------------TCC----------------C-T-T-T-GAAT-T-GGG--AAAAA-TT--AG-C-GACTT-TT-T-CC-T---C-AAAT-TGG-G-AA-AAAT--CA-T-TTG-TAtacaaat
gi|48926 : TGACTT--TCTCT--A-TATTTTT--T--AG-CA-A-GG----------G--TCC------T---G-T--GC-T-T-TCAAAT-T-GGG---AAAA-TT--GT-T-GATGA-TT-C-AG-TG--C---AT-TGG-G-AA-AAAT---A-A-GTT-TAT
gi|48927 : TGATTT--T-TCT--A-TATTTTT-----A--C----------------------------------T-GGC-T-T-TCTAAT-T-GGG--AAAAA-AT--AT-C-GATAA-TT-C-AG-T---G-AAAT-TGG-G-AA-AAAT--AA-G-TTT-TAT
gi|48928 : TGATTT--T-TCT--A-CA-TTTT--A--A--CAGA-AG----------G--TCC------T---G-T-GGC-TATATCGAA--T-GGG--AAAAA-TG--AT-CAGATAT-TT-C-AG-TGAGC-AAATATTG-G-AA-AAAT--TA-G-TTT-TAT
gi|48929 : TGATTT--T-TCT--A-TATTGTT--T--A--CA-A-GG----------G--TCC------T---G-T-GGC-T-T-TCAAAT-T-CGG--A------------------T-TT-C-AG-T---C-ATAT-TGG-G-TA-AAAT--CT-A-TTT-TAT
gi|48930 : TGGTTT--T-TCCTAA-TATTTTC-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG--AAAAA-TT--GC-A-GAAAA-TT-CAAG-T---C-AAAA-TGG-G----AAAC--TA-A-ATT-TAT
gi|48933 : GGTTT--T-TGT--A-CAATTTT--C--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-T-TTGAAT-T-AGG--AAAAA-AT--TT-T-GATAT-TT-C-AG-T---C-AAAT-TGG-G-AA-AAAT--CA-A-ATT-TAT
gi|48934 : ATTT--T-TCT--A-CATTTTT-----A--CA-A-AG----------G--TCC------T---G-T-GGC-T-T-TCGAAT-T-GGG---AAAA-TT--GT-C-G--AT-TT-C-AG-T---C-AAAT-TGG-G-AATAAAT--TA-G-TTT-TAT
gi|48935 : ATTA--T-TTT--A-TACTTTT--T--A--TA-A-GG----------G--TCC------T---G-T-GGC-T-G-TCGAAT-T-GGG--AAAA----------------------AG-T---C-AAAT-TGG-G-GA-AAAT--CA-A-TGT-TAT
gi|48936 : TTT--T-CTT--A-CATGGTT--T--A--CA-AAGG----------G--TCCC-----T---G-T-GGC-T-T-TCGAAT-G-GGGAAAAAAA-CT--GT-C-GATAT-TT-CGAGTT---C-AAA--TGG-G-AA-AAAT--TA-G-TTT-
gi|48937 : TTT--T-TTT--G-TATTATT-----A--AA-A-CG----------A--CCA------C---C-T-CCC-T-T-GTGAAT-T-GGG--AAAAAATTAAG--C-GAAAT-TTTC----C---C-AAAT-TGG-G-AA-AAAT--CA-T-TTG-TA
gi|48938 : -A-GG----------G--GCC------A---G-G-GCC-T-T-TTCAAT-T-GGG--AAAAA-TT--AT-C-GACAT-TT-G-CT-T---A-AAAT-TGG-G-AA-AAAT--
gi|48939 : ttttttaaggtcttaatatcATAT--T-TCT--A-AATTTTT--TTTA--CA---GG----------G--TCC------T---G-TGGGC-T-T-TCG-AT-T-GGG---AAAA-TT--GT-T-GATA--TT-C-AG-T---A-ATAT-TGG-A-AA-AAAT--AA-A-TT
gi|48940 : ttttct----------G--TCC------A---G-T-----T-T-TCGAAT-T-GGG--AAAAA-CT--GT-C-GATAT-TT-C-AG-T---C-AAAT-TGT-G-AA-AAAT--AG-A-TTT-TAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|48931 ): TGATTTTTTTTGTTTTTTAAACTACCACCCCCTCCCTTTGAATTGGGAAAATTTAGCGACATTTTCCTCAAATTGGGAAAAATCATTTGTA
Unaligned ( gi|48932 ): TGATTGTTCTTGTTTTTTTTAAACTACCACTCTTCCTTTTGAATTGGGAAATATTAGCGACATTTTTCTCAAATTGGGAAAAATAATTT