lowQualScore : 0 0 1 0 0 0 1 333 44 222 0 1 11 0 0 0 0 11 1 0 0 11 0 0 0
lowQualScore : . . . . . . . ... .. ... . . .. . . . . .. . . . .. . . .
lowQualScore : 5 8 6 8 8 8 6 000 00 000 8 6 99 8 8 8 8 99 6 8 8 11 8 8 8
consensus : CACTAC-AC-C-AA-AA-T-T---TTA-NTT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
Reference ( gi|11571 ) : CACTAC-AC-C-AA-AA-T-T---TTA-ATT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11574 : CAATAC-AC-C-AA-AA-T-T---TTA-ATT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11572 : CACTAC-AC-C-AC-AA-T-T---TTA-GTT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11576 : CATTAC-AC-C-AA-AA-T-T---TTA-ATT-A-A-TGATT-CA--CT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11578 : CATTAC-AC-C-AA-A--T-T---TTA-ATT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11577 : CATTAC-AC-C-AA-AA-T-T---TTA-ATT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AT-AGTTT
gi|11580 : CACTAC-AC-C-AA-AA-T-T---GTT-ATT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11581 : CACCAC-AC-C-AA-AA-T-T---TTA-ATT-A-A-TGATT-CG--TT-A-A-AGC-ACC--TTCC-AA-G-A--A-GC-AC-AGTTT
gi|11570 : CACTAC-ACAC-AA-AA-T-T---T-A-ATT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11587 : CATTAC-AC-C-AA----T-T---TTA-ATT-T-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11591 : CGCTAC-AC-C-AC-AA-T-T---TTA-ATT-A-A-TAATT-CG--GT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGT
gi|11593 : CACTAC-AC-T-AC-AA-T-T---TTA-ATT-A-A-TGATT-CG--TTGT-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-CGTT
gi|11573 : CACAAC-AC-C-AA-AA-T-T---TTA-GTT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11583 : CAATAC-AC-C-AA-AA-TCT---TTA-GTT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11575 : CACTAC-AC-C-AA-AA-T-T---TCA-TTT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-A
gi|11582 : CACTAA-AC-C-AA-AC-T-T---TTA-ATT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTAC-AT-G-A--A-GC-AT-AGTTT
gi|11590 : CAATAT-AC-C-AC-AA-T-T---ATA-GTT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AC-AGTTT
gi|11588 : CACTAC-AC-C-AA-AT-T-T---TTA-ATT-A-A-CGATT-CG--TT-T-A-AAC-ACT--TTTT-AT-G-A--A-TC-AC-AGTTT
gi|11597 : CATTAC-AT-C-AA-AA-T-T---TTA-TTT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--G-GC-AT-GGTTT
gi|11599 : CATTAC-AC-C-AA-AA-T-T---TTA-ATG-A-A-TGATT-CG--TT-T-T-AAC-ACC--TTTC-AA-G-A--A-GC-
gi|11592 : CACTAC-AC-C-GA-AA-T-T---TTA-ATT-A-A-TTATT-CA--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-G---C-AGTTT
gi|11598 : CACTGC-AC-C-AA-A----T---TTA-ATT-A---TGATTTCG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-
gi|11595 : CACTAC-AC-T-AC-AA-T-T---TTA-ATTTA-A-TGATT-CG--TT-G-T-AGC-ACC--TTTC-AAGG-A--A-GC-AC-CGTT
gi|11602 : CACTAC-AT-C-AA-CA-T-T---TTA-TTT-C-A-GGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-A
gi|11579 : CACTAC-AT-C-AAGAA-T-T---TTA-TTT-T-A-TGATT-CA--TT-T-A--GC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11594 : CATTAC-AT-C-AA-AA-T-T---AT---TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11601 : CATTAC-AT-T-AA-AA-T-T---TTA-TTT-C-A-TGATT-CA--TT-T-A-AGC-ACC--CTTT-AA-G-A--A-GC-AT-GGTTT
gi|11600 : CAATAC-AC-C-AA-AA-T-T---TTA-GTT-AGA-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--A-GC--C-AGATT
gi|11584 : CAATAC-AC-A-AA-AT-T-T---TTA-GTT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AC-GAA--A-GC-AC-AGTTT
gi|11586 : CACTA--AC-C-AA-AA-A-T---TTA-AGT-A---TGATT-CG--TT---A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11589 : CATTAC-AT-T-AA-A--T-T---TTA-TTT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11607 : CATTAC-AT-T-AA-AA-T-T---TTA-TTT-C-A-TGATT-CA--TC-T-AGAGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11608 : CAATAC-AC-C-AA-AA-T-TA--TTAGATT-A-AATGATTACG--TT-T-A-AGC-ACA--TTTCAAA-G-AACA-GC-AC-AGTTT
gi|11609 : CATTAC-AT-C-AA-AA-T-T---TTA-TTT-C-A-TGATT-CGT-TT-T-T-AGC-ACC--TTTT-AA-G-A--A-TC-AT-GGTTT
gi|11606 : CATTAC-AT-C-AA-CA-T-T---TTA-TTT-C-A-TGATT-CA--TT-T-A-AAC-ACC--TTTT-AG-A-A--A-GC-AT-GGTTT
gi|11596 : CATTAC-AT-T-AA-AA-T-T---T-A-TTT-C-A-TGATT-CA--TT-T-A-AGT-ACC--TTTC-AA-T-A--A-GC-AT-GGTTT
gi|11603 : CACAAC-AC-T-AT-AA-T-T---TTA-TTT-G-A-TGACT-CG--TT-T-A-AGA-ACC--TCTC-AT-G-A--A-GC-AC--GTT
gi|11604 : CACAAC-AC-T-AA-AA-T-T---TCA-TTT-A-A-TGATT-TG--TT-G-A-AGC-ACA--TTTC-AT-G-A--A-AC-AT-GATTT
gi|11585 : CAATAC-ACTC-AA-AA-C-TCTCTTA-GTTTA-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC--A-G-A--A-GC-ACAAGTT
gi|11605 : CAATAC-AC-CCAA-AA-T-T-----A-GTT-ACA-TGATT-CGCGTT-T-A-AGC-ACA--TTTCAAA-G-A--A-G--AC-AGTTT
gi|11610 : ATTAC-AC-T-AA-AT-T-T---TTA-TTT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11611 : ATTAC-AT-C-AA-A--T-T---TTA-TTT-C-A-TGATT-CG--TT-T-A-AGC-ACC--CTTC-AA-G-A--A-GC-AT-GGTT
gi|11612 : CTACCAC-C-AA-CA-T-T---TTT-ATT-A-A-TGGTT-CG--TT-T-A-AGC-ACCT-TTTC-AA-G-A--A-GC-AC-AGCTT
gi|11614 : TAC-AC-C-AA-AA-T-T---TTA-GTT-A-A-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--AGGC-AC-AGTTT
gi|11613 : TAC-AT-C-AA-AA-T-T---TTG-TTT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTT
gi|11616 : TAC-AC-T-AA-TA-T-T---TTA-ATT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-A
gi|11615 : TAC-AC-C-AA-AAAT-T---TTA-GTT-A-A-TGATT-CG--TT-T-A-AGCAACA--TTTC-AA---A--A-GCAAC-AGTTT
gi|11617 : TAC--C-C-AA-AA-A-T---TTA-ATT-A-A-TGATT-TC--TT-TAA-AGC-ACT--TTTC-AA-G-A--A-GC-A
gi|11618 : AT-AC-C-AA-AA-T-TA--TTA-GTT-A-A-TGATT-CG--TT-T-A-AGC--CTAATTTC-AA-G-A--A-GC-AC-AGGTT
gi|11619 : C-AC-C-AA-AA-T-T---T-A-GTT-A-A-TGATT-CG--TT-T-A-AGC-ACA--TTTC-AG-A-A--A-AC-AC-AGTTT
gi|11620 : C-C-AA-AA-TAT---CTA-GCT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT--GTTT
gi|11621 : TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
Alignments
lowQualScore : 0 0 1 0 0 0 1 333 22 111 0 1 11 0 0 0 0 11 1 0 0 11 0 0 11
lowQualScore : . . . . . . . ... .. ... . . .. . . . . .. . . . .. . . ..
lowQualScore : 2 8 6 8 8 8 6 777 55 888 8 5 88 8 8 8 8 88 5 8 8 11 8 8 33
consensus : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
Reference ( family-418 ) : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
gi|11570 : CACTAC-ACAC-AA-AA-T-T---T-AA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11571 : CACTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11572 : CACTAC-AC-C-AC-AA-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11573 : CACAAC-AC-C-AA-AA-T-T---TTAG-TT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11574 : CAATAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11575 : CACTAC-AC-C-AA-AA-T-T---TCAT-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-
gi|11576 : CATTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CA--CT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTTa
gi|11577 : CATTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AT-AGTTT
gi|11578 : CATTAC-AC-C-AA-A--T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11579 : CACTAC-AT-C-AAGAA-T-T---TTAT-TT-T-A-TGATT-CA--TT-T-A--GC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11580 : CACTAC-AC-C-AA-AA-T-TG--TTA--TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11581 : CACCAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-A-A-AGC-ACC--TTCC-AA-G-A--A-GC-AC-AGTTT
gi|11582 : CACTAA-AC-C-AA-AC-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTAC-AT-G-A--A-GC-AT-AGTTT
gi|11583 : CAATAC-AC-C-AA-AA-TCT---TTAG-TT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11584 : CAATAC-AC-A-AA-AT-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AC-GAA--A-GC-AC-AGTTT
gi|11585 : CAATAC-ACTC-AA-AA-C-TCTCTTAG-TTTA-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC--A-G-A--A-GC-AC-
gi|11586 : CACTA--AC-C-AA-AA-A-T---TTAA-GT-A---TGATT-CG--TT---A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTTaagtt
gi|11587 : CATTAC-AC-C-AA----T-T---TTAA-TT-T-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11588 : CACTAC-AC-C-AA-AT-T-T---TTAA-TT-A-A-CGATT-CG--TT-T-A-AAC-ACT--TTTT-AT-G-A--A-TC-AC-AGTTT
gi|11589 : CATTAC-AT-T-AA-A--T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11590 : CAATAT-AC-C-AC-AA-T-T---ATAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AC-AGTTT
gi|11591 : CGCTAC-AC-C-AC-AA-T-T---TTAA-TT-A-A-TAATT-CG--GT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGT
gi|11592 : CACTAC-AC-C-GA-AA-T-T---TTAA-TT-A-A-TTATT-CA--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-A---GTTT
gi|11593 : CACTAC-AC-T-AC-AA-T-T---TTAA-TT-A-A-TGATT-CG--TTGT-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-CGTT
gi|11594 : CATTAC-AT-C-AA-AA-T-T-----AT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11595 : CACTAC-AC-T-AC-AA-T-T---TTAA-TTTA-A-TGATT-CG--TT-G-T-AGC-ACC--TTTC-AAGG-A--A-GC-AC-CGTT
gi|11596 : CATTAC-AT-T-AA-AA-T-T---T-AT-TT-C-A-TGATT-CA--TT-T-A-AGT-ACC--TTTC-AA-T-A--A-GC-AT-GGTTT
gi|11597 : CATTAC-AT-C-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--G-GC-AT-GGTTT
gi|11598 : CACTGC-AC-C-AA-A----T---TTAA-TT-A---TGATTTCG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-
gi|11599 : CATTAC-AC-C-AA-AA-T-T---TTAA-TG-A-A-TGATT-CG--TT-T-T-AAC-ACC--TTTC-AA-G-A--A-GC-
gi|11600 : CAATAC-AC-C-AA-AA-T-T---TTAG-TT-AGA-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--A-GC-
gi|11601 : CATTAC-AT-T-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--CTTT-AA-G-A--A-GC-AT-GGTTTcagatt
gi|11602 : CACTAC-AT-C-AA-CA-T-T---TTAT-TT-C-A-GGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-A
gi|11603 : CACAAC-AC-T-AT-AA-T-T---TTAT-TT-G-A-TGACT-CG--TT-T-A-AGA-ACC--TCTC-AT-G-A--A-GC-AC-G
gi|11604 : CACAAC-AC-T-AA-AA-T-T---TCAT-TT-A-A-TGATT-TG--TT-G-A-AGC-ACA--TTTC-AT-G-A--A-AC-AT-GATTTtt
gi|11605 : CAATAC-AC-CCAA-AA-T-T-----AG-TT-ACA-TGATT-CGCGTT-T-A-AGC-ACA--TTTCAAA-G-A--A-G--AC-AGTTT
gi|11606 : CATTAC-AT-C-AA-CA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AAC-ACC--TTTT-AG-A-A--A-GC-AT-GGTTT
gi|11607 : CATTAC-AT-T-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TC-T-AGAGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11608 : CAATAC-AC-C-AA-AA-T-TA--TTAGATT-A-AATGATTACG--TT-T-A-AGC-ACA--TTTCAAA-G-AACA-GC-AC-AGTTT
gi|11609 : CATTAC-AT-C-AA-AA-T-T---TTAT-TT-C-A-TGATT-CGT-TT-T-T-AGC-ACC--TTTT-AA-G-A--A-TC-AT-GGTTT
gi|11610 : ATTAC-AC-T-AA-AT-T-T---TTAT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11611 : ATTAC-AT-C-AA-A--T-T---TTAT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--CTTC-AA-G-A--A-GC-AT-GGTT
gi|11612 : CTACCAC-C-AA-CA-T-T---TTTA-TT-A-A-TGGTT-CG--TT-T-A-AGC-ACCT-TTTC-AA-G-A--A-GC-AC-AGCTT
gi|11613 : TAC-AT-C-AA-AA-T-T---TTGT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTT
gi|11614 : TAC-AC-C-AA-AA-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--AGGC-AC-AGTTT
gi|11615 : TAC-AC-C-AA-AAAT-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGCAACA--TTTC-AA---A--A-GCAAC-AGTTT
gi|11616 : TAC-AC-T-AA-TA-T-T---TTAA-TT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-
gi|11617 : TAC--C-C-AA-AA-A-T---TTAA-TT-A-A-TGATT-TC--TT-TAA-AGC-ACT--TTTC-AA-G-A--A-GC-Aa
gi|11618 : AT-AC-C-AA-AA-T-TA--TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC--CTAATTTC-AA-G-A--A-GC-ACAGGTT
gi|11619 : C-AC-C-AA-AA-T-T---T-AG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACA--TTTC-AG-A-A--A-AC-AC-AGTTT
gi|11620 : C-C-AA-AA-TAT---CTAG-CT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GTTT
gi|11621 : -TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
Alignments
lowQualScore : 0 0 1 0 0 0 1 333 22 111 0 1 11 0 0 0 0 11 1 0 0 11 0 0 11
lowQualScore : . . . . . . . ... .. ... . . .. . . . . .. . . . .. . . ..
lowQualScore : 2 8 6 8 8 8 6 777 55 888 8 5 88 8 8 8 8 88 5 8 8 11 8 8 33
consensus : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
Reference ( family-418 ) : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
gi|11570 : CACTAC-ACAC-AA-AA-T-T---T-AA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11571 : CACTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11572 : CACTAC-AC-C-AC-AA-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11573 : CACAAC-AC-C-AA-AA-T-T---TTAG-TT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11574 : CAATAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11575 : CACTAC-AC-C-AA-AA-T-T---TCAT-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-
gi|11576 : CATTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CA--CT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTTa
gi|11577 : CATTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AT-AGTTT
gi|11578 : CATTAC-AC-C-AA-A--T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11579 : CACTAC-AT-C-AAGAA-T-T---TTAT-TT-T-A-TGATT-CA--TT-T-A--GC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11580 : CACTAC-AC-C-AA-AA-T-TG--TTA--TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11581 : CACCAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-A-A-AGC-ACC--TTCC-AA-G-A--A-GC-AC-AGTTT
gi|11582 : CACTAA-AC-C-AA-AC-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTAC-AT-G-A--A-GC-AT-AGTTT
gi|11583 : CAATAC-AC-C-AA-AA-TCT---TTAG-TT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11584 : CAATAC-AC-A-AA-AT-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AC-GAA--A-GC-AC-AGTTT
gi|11585 : CAATAC-ACTC-AA-AA-C-TCTCTTAG-TTTA-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC--A-G-A--A-GC-AC-
gi|11586 : CACTA--AC-C-AA-AA-A-T---TTAA-GT-A---TGATT-CG--TT---A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTTaagtt
gi|11587 : CATTAC-AC-C-AA----T-T---TTAA-TT-T-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11588 : CACTAC-AC-C-AA-AT-T-T---TTAA-TT-A-A-CGATT-CG--TT-T-A-AAC-ACT--TTTT-AT-G-A--A-TC-AC-AGTTT
gi|11589 : CATTAC-AT-T-AA-A--T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11590 : CAATAT-AC-C-AC-AA-T-T---ATAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AC-AGTTT
gi|11591 : CGCTAC-AC-C-AC-AA-T-T---TTAA-TT-A-A-TAATT-CG--GT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGT
gi|11592 : CACTAC-AC-C-GA-AA-T-T---TTAA-TT-A-A-TTATT-CA--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-A---GTTT
gi|11593 : CACTAC-AC-T-AC-AA-T-T---TTAA-TT-A-A-TGATT-CG--TTGT-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-CGTT
gi|11594 : CATTAC-AT-C-AA-AA-T-T-----AT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11595 : CACTAC-AC-T-AC-AA-T-T---TTAA-TTTA-A-TGATT-CG--TT-G-T-AGC-ACC--TTTC-AAGG-A--A-GC-AC-CGTT
gi|11596 : CATTAC-AT-T-AA-AA-T-T---T-AT-TT-C-A-TGATT-CA--TT-T-A-AGT-ACC--TTTC-AA-T-A--A-GC-AT-GGTTT
gi|11597 : CATTAC-AT-C-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--G-GC-AT-GGTTT
gi|11598 : CACTGC-AC-C-AA-A----T---TTAA-TT-A---TGATTTCG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-
gi|11599 : CATTAC-AC-C-AA-AA-T-T---TTAA-TG-A-A-TGATT-CG--TT-T-T-AAC-ACC--TTTC-AA-G-A--A-GC-
gi|11600 : CAATAC-AC-C-AA-AA-T-T---TTAG-TT-AGA-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--A-GC-
gi|11601 : CATTAC-AT-T-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--CTTT-AA-G-A--A-GC-AT-GGTTTcagatt
gi|11602 : CACTAC-AT-C-AA-CA-T-T---TTAT-TT-C-A-GGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-A
gi|11603 : CACAAC-AC-T-AT-AA-T-T---TTAT-TT-G-A-TGACT-CG--TT-T-A-AGA-ACC--TCTC-AT-G-A--A-GC-AC-G
gi|11604 : CACAAC-AC-T-AA-AA-T-T---TCAT-TT-A-A-TGATT-TG--TT-G-A-AGC-ACA--TTTC-AT-G-A--A-AC-AT-GATTTtt
gi|11605 : CAATAC-AC-CCAA-AA-T-T-----AG-TT-ACA-TGATT-CGCGTT-T-A-AGC-ACA--TTTCAAA-G-A--A-G--AC-AGTTT
gi|11606 : CATTAC-AT-C-AA-CA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AAC-ACC--TTTT-AG-A-A--A-GC-AT-GGTTT
gi|11607 : CATTAC-AT-T-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TC-T-AGAGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11608 : CAATAC-AC-C-AA-AA-T-TA--TTAGATT-A-AATGATTACG--TT-T-A-AGC-ACA--TTTCAAA-G-AACA-GC-AC-AGTTT
gi|11609 : CATTAC-AT-C-AA-AA-T-T---TTAT-TT-C-A-TGATT-CGT-TT-T-T-AGC-ACC--TTTT-AA-G-A--A-TC-AT-GGTTT
gi|11610 : ATTAC-AC-T-AA-AT-T-T---TTAT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11611 : ATTAC-AT-C-AA-A--T-T---TTAT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--CTTC-AA-G-A--A-GC-AT-GGTT
gi|11612 : CTACCAC-C-AA-CA-T-T---TTTA-TT-A-A-TGGTT-CG--TT-T-A-AGC-ACCT-TTTC-AA-G-A--A-GC-AC-AGCTT
gi|11613 : TAC-AT-C-AA-AA-T-T---TTGT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTT
gi|11614 : TAC-AC-C-AA-AA-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--AGGC-AC-AGTTT
gi|11615 : TAC-AC-C-AA-AAAT-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGCAACA--TTTC-AA---A--A-GCAAC-AGTTT
gi|11616 : TAC-AC-T-AA-TA-T-T---TTAA-TT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-
gi|11617 : TAC--C-C-AA-AA-A-T---TTAA-TT-A-A-TGATT-TC--TT-TAA-AGC-ACT--TTTC-AA-G-A--A-GC-Aa
gi|11618 : AT-AC-C-AA-AA-T-TA--TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC--CTAATTTC-AA-G-A--A-GC-ACAGGTT
gi|11619 : C-AC-C-AA-AA-T-T---T-AG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACA--TTTC-AG-A-A--A-AC-AC-AGTTT
gi|11620 : C-C-AA-AA-TAT---CTAG-CT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GTTT
gi|11621 : -TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
blockSeqs : T C CTC GA TA T CG AA A AC AG
blockSeqs : . A G A TA A T T A . A
blockSeqs : . . A G AG . . . . . A
blockSeqs : . . A G AC . . . . . A
blockSeqs : . . . A A . . . . . A
blockSeqs : . . . T A . . . . . A
blockSeqs : . . . A A . . . . . A
blockSeqs : . . . A A . . . . . A
blockSeqs : . . . A A . . . . . G
blockSeqs : . . . T A . . . . . A
blockSeqs : . . . A A . . . . . A
blockSeqs : . . . A A . . . . . A
blockSeqs : . . . G T . . . . . A
blockSeqs : . . . G A . . . . . A
blockSeqs : . . . G A . . . . . A
blockSeqs : . . . A A . . . . . A
blockSeqs : . . . A A . . . . . A
blockSeqs : . . . A A . . . . . G
blockSeqs : . . . T A . . . . . A
blockSeqs : . . . G T . . . . . A
blockSeqs : . . . A A . . . . . C
blockSeqs : . . . A C . . . . . G
blockSeqs : . . . A A . . . . . C
blockSeqs : . . . T A . . . . . G
blockSeqs : . . . A A . . . . . G
blockSeqs : . . . T A . . . . . G
blockSeqs : . . . T C . . . . . G
blockSeqs : . . . A C . . . . . G
blockSeqs : . . . A C . . . . . A
blockSeqs : . . . G A . . . . . G
blockSeqs : . . . T A . . . . . G
blockSeqs : . . . T C . . . . . A
blockSeqs : . . . T C . . . . . G
blockSeqs : . . . T G . . . . . G
blockSeqs : . . . G A . . . . . G
blockSeqs : . . . T C . . . . . A
blockSeqs : . . . T C . . . . . G
blockSeqs : . . . T A . . . . . A
blockSeqs : . . . T C . . . . . A
blockSeqs : . . . T C . . . . . A
blockSeqs : . . . A C . . . . . G
blockSeqs : . . . T A . . . . . G
blockSeqs : . . . G C . . . . . .
blockSeqs : . . . G A . . . . .
blockSeqs : . . . A A . . . . .
blockSeqs : . . . A A . . . . .
blockSeqs : . . . G A . . . . .
blockSeqs : . . . G A . . . . .
blockSeqs : . . . G A . . . . .
blockSeqs : . . . . C . . . . .
blockSeqs : C . . . . .
blockSeqCons :
originalCons : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
finalCons : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
Alignments
lowQualScore : 0 0 1 0 0 0 1 333 22 111 0 1 11 0 0 0 0 11 1 0 0 11 0 0 11
lowQualScore : . . . . . . . ... .. ... . . .. . . . . .. . . . .. . . ..
lowQualScore : 2 8 6 8 8 8 6 777 55 888 8 5 88 8 8 8 8 88 5 8 8 11 8 8 33
consensus : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
Reference ( family-418 ) : CACTAC-AC-C-AA-AA-T-T---TTAN-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-GGTTT
gi|11570 : CACTAC-ACAC-AA-AA-T-T---T-AA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11571 : CACTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11572 : CACTAC-AC-C-AC-AA-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11573 : CACAAC-AC-C-AA-AA-T-T---TTAG-TT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTT
gi|11574 : CAATAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11575 : CACTAC-AC-C-AA-AA-T-T---TCAT-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AT-G-A--A-GC-AC-
gi|11576 : CATTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CA--CT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTTa
gi|11577 : CATTAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AT-AGTTT
gi|11578 : CATTAC-AC-C-AA-A--T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11579 : CACTAC-AT-C-AAGAA-T-T---TTAT-TT-T-A-TGATT-CA--TT-T-A--GC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11580 : CACTAC-AC-C-AA-AA-T-TG--TTA--TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11581 : CACCAC-AC-C-AA-AA-T-T---TTAA-TT-A-A-TGATT-CG--TT-A-A-AGC-ACC--TTCC-AA-G-A--A-GC-AC-AGTTT
gi|11582 : CACTAA-AC-C-AA-AC-T-T---TTAA-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTAC-AT-G-A--A-GC-AT-AGTTT
gi|11583 : CAATAC-AC-C-AA-AA-TCT---TTAG-TT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11584 : CAATAC-AC-A-AA-AT-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC-AC-GAA--A-GC-AC-AGTTT
gi|11585 : CAATAC-ACTC-AA-AA-C-TCTCTTAG-TTTA-A-TGATT-CG--TT-T-G-AGC-ACA--TTTC--A-G-A--A-GC-AC-
gi|11586 : CACTA--AC-C-AA-AA-A-T---TTAA-GT-A---TGATT-CG--TT---A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-AGTTTaagtt
gi|11587 : CATTAC-AC-C-AA----T-T---TTAA-TT-T-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGTTT
gi|11588 : CACTAC-AC-C-AA-AT-T-T---TTAA-TT-A-A-CGATT-CG--TT-T-A-AAC-ACT--TTTT-AT-G-A--A-TC-AC-AGTTT
gi|11589 : CATTAC-AT-T-AA-A--T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11590 : CAATAT-AC-C-AC-AA-T-T---ATAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GT-AC-AGTTT
gi|11591 : CGCTAC-AC-C-AC-AA-T-T---TTAA-TT-A-A-TAATT-CG--GT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-AGT
gi|11592 : CACTAC-AC-C-GA-AA-T-T---TTAA-TT-A-A-TTATT-CA--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-A---GTTT
gi|11593 : CACTAC-AC-T-AC-AA-T-T---TTAA-TT-A-A-TGATT-CG--TTGT-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-CGTT
gi|11594 : CATTAC-AT-C-AA-AA-T-T-----AT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11595 : CACTAC-AC-T-AC-AA-T-T---TTAA-TTTA-A-TGATT-CG--TT-G-T-AGC-ACC--TTTC-AAGG-A--A-GC-AC-CGTT
gi|11596 : CATTAC-AT-T-AA-AA-T-T---T-AT-TT-C-A-TGATT-CA--TT-T-A-AGT-ACC--TTTC-AA-T-A--A-GC-AT-GGTTT
gi|11597 : CATTAC-AT-C-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--G-GC-AT-GGTTT
gi|11598 : CACTGC-AC-C-AA-A----T---TTAA-TT-A---TGATTTCG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AC-
gi|11599 : CATTAC-AC-C-AA-AA-T-T---TTAA-TG-A-A-TGATT-CG--TT-T-T-AAC-ACC--TTTC-AA-G-A--A-GC-
gi|11600 : CAATAC-AC-C-AA-AA-T-T---TTAG-TT-AGA-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--A-GC-
gi|11601 : CATTAC-AT-T-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--CTTT-AA-G-A--A-GC-AT-GGTTTcagatt
gi|11602 : CACTAC-AT-C-AA-CA-T-T---TTAT-TT-C-A-GGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-A
gi|11603 : CACAAC-AC-T-AT-AA-T-T---TTAT-TT-G-A-TGACT-CG--TT-T-A-AGA-ACC--TCTC-AT-G-A--A-GC-AC-G
gi|11604 : CACAAC-AC-T-AA-AA-T-T---TCAT-TT-A-A-TGATT-TG--TT-G-A-AGC-ACA--TTTC-AT-G-A--A-AC-AT-GATTTtt
gi|11605 : CAATAC-AC-CCAA-AA-T-T-----AG-TT-ACA-TGATT-CGCGTT-T-A-AGC-ACA--TTTCAAA-G-A--A-G--AC-AGTTT
gi|11606 : CATTAC-AT-C-AA-CA-T-T---TTAT-TT-C-A-TGATT-CA--TT-T-A-AAC-ACC--TTTT-AG-A-A--A-GC-AT-GGTTT
gi|11607 : CATTAC-AT-T-AA-AA-T-T---TTAT-TT-C-A-TGATT-CA--TC-T-AGAGC-ACC--TTTT-AA-G-A--A-GC-AT-GGTTT
gi|11608 : CAATAC-AC-C-AA-AA-T-TA--TTAGATT-A-AATGATTACG--TT-T-A-AGC-ACA--TTTCAAA-G-AACA-GC-AC-AGTTT
gi|11609 : CATTAC-AT-C-AA-AA-T-T---TTAT-TT-C-A-TGATT-CGT-TT-T-T-AGC-ACC--TTTT-AA-G-A--A-TC-AT-GGTTT
gi|11610 : ATTAC-AC-T-AA-AT-T-T---TTAT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT
gi|11611 : ATTAC-AT-C-AA-A--T-T---TTAT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--CTTC-AA-G-A--A-GC-AT-GGTT
gi|11612 : CTACCAC-C-AA-CA-T-T---TTTA-TT-A-A-TGGTT-CG--TT-T-A-AGC-ACCT-TTTC-AA-G-A--A-GC-AC-AGCTT
gi|11613 : TAC-AT-C-AA-AA-T-T---TTGT-TT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTT
gi|11614 : TAC-AC-C-AA-AA-T-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACA---TTC-AA-G-A--AGGC-AC-AGTTT
gi|11615 : TAC-AC-C-AA-AAAT-T---TTAG-TT-A-A-TGATT-CG--TT-T-A-AGCAACA--TTTC-AA---A--A-GCAAC-AGTTT
gi|11616 : TAC-AC-T-AA-TA-T-T---TTAA-TT-A-A-TGATT-TG--TT-T-A-AGC-ACT--TTTC-AT-G-A--A-GC-AC-
gi|11617 : TAC--C-C-AA-AA-A-T---TTAA-TT-A-A-TGATT-TC--TT-TAA-AGC-ACT--TTTC-AA-G-A--A-GC-Aa
gi|11618 : AT-AC-C-AA-AA-T-TA--TTAG-TT-A-A-TGATT-CG--TT-T-A-AGC--CTAATTTC-AA-G-A--A-GC-ACAGGTT
gi|11619 : C-AC-C-AA-AA-T-T---T-AG-TT-A-A-TGATT-CG--TT-T-A-AGC-ACA--TTTC-AG-A-A--A-AC-AC-AGTTT
gi|11620 : C-C-AA-AA-TAT---CTAG-CT-C-A-TGATT-CG--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GTTT
gi|11621 : -TT-C-A-TGATT-CA--TT-T-A-AGC-ACC--TTTC-AA-G-A--A-GC-AT-GGTTT