lowQualScore : 111111111111111
lowQualScore : 2 222 11 0 11 11 0 777777777777777 1 1 1 0 1 0 0
lowQualScore : . ... .. . .. .. . ............... . . . . . . .
lowQualScore : 4 555 00 7 77 00 7 000000000000000 4 4 4 7 4 7 7
consensus : AGTNCGAG-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
Reference ( gi|127774 ) : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127772 : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GTCTG
gi|127767 : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GTGCTA---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127782 : AGTTTGAG-C-TT--G-AGTA--C--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-GACCT-CCAG-GCCTG
gi|127773 : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAG-G-TTT-TAT-AACCT-CCAG-GCC
gi|127769 : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127776 : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-ATCT
gi|127813 : AGTTTGAGAC-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127789 : gAGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCC
gi|127791 : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GTGATC---AA-AAGA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127799 : AGTTTGAG-C-TT--G-AGTG--T--G-AA-AAC-GCGCTC---AA-AAAA-G-CTT-TAT-AACAT-CCAG-ACCTG
gi|127797 : AGTTTGAGTC-TT--G-AGTA--T--A-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAC-AACCT-CCAG-GCC
gi|127796 : AGTTTGAG-C-TT--G-AGCA--T--G-AA-AAC-GTGCTC---AA-GATA-G-TTT-TAT-AACCT-CTAG-GCC
gi|127786 : AGTTTGAG-C-TT--G-AGTA--T--G-AA-AAC-GCACTC---AA-GAAA-G-CTT-TAT-AACTT-CCAG-GC
gi|127784 : AGTTTGAG-T-CT--G-AGTA--T--G-AA-AAC-CTGATCA--AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCCTG
gi|127818 : AGTTTGAG-CATT--G-AGTA--T--G-AA-A-C-GTGCCCTCAAA-AAAA-G-TTT-TAT-AACCTCCCAG-GCCTG
gi|127781 : gAGTTTGAG-C-TT--G-AGTA--C--G-AA--------CTC---AA-AA-A-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127768 : agtacaaAGTACGAG-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127766 : AGTACGAG-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127770 : AGTACGAG-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127777 : AGTCCGAG-T-TT--G-AGTA--T--G-AG-CAC-A-G------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127779 : AGTCCGAG-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127778 : AGTCCGAG-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127771 : AGTACGAG-T-TT--G-AATT--T--G-A------GTACTG---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127783 : AGTCCGAG-T-TT--G-AGTA--T--G-AG-TA--GAG-------A-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127775 : AGTACGAG-T-TT--G-AGTA--C--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCC-CCAG-GC
gi|127808 : AGTTCGAG-C-TT--G-AAT--------------------C---AA-AAAA-G-TTT-TAT-AACCT-TCAG-CCCTG
gi|127788 : cgAGTACGAG-T-TT--G-AGTA--T--G-A-------TACAA---GA-AAAA-G-TTT-TATAAACCT-CCAG-GC
gi|127785 : AGTACGAG-T-TT--GGAGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-ATCCC-CCAG-GCC
gi|127792 : AGTACGAG-T-TT--G-AGTA--T--G-AT-TAC-G-GT--------AAAA-G-TTT-TAT-AGCCT-CCAC-GCC
gi|127790 : AGTACGAG-T-TT--G-AGTA--T--G-AA-TAC----------AATAAAG-G-TCT-TAT-AACCT-GCAG-GCC
gi|127787 : AGTACGAG-T-TT--C-AGTA--T--G-A------GTACAG---AA-AAAATG-TTT-TAT-AACCT-CCAG-
gi|127798 : AGTTTGAG-T-AT--G-AGTA--T--G--------GT----------AGAA-G-TCT-CAT-AACCT-CTAG-GCC
gi|127793 : agtacaAGTACGAG-T-TT--G-AATA--T--G-AG-TACAGT----------AAAA-G-TTT-TAC-AACCG-CTAG-GCC
gi|127794 : AGTACGAG-T-TT--G-AGTA--T--G-AG-TAT-G-G------AA-AAAA-GTTTT-TATGAACTC-CCAGTGCCT
gi|127801 : AGTACGAG-T-TT--C-AGGA--T--G-AG-TAC-G-GT--------AAAA-G-TTT-TGT-AACCT-CAAG-
gi|127803 : TGCG-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127804 : taTGAG-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-C
gi|127805 : taTGAG-T-TT--G-AGTAG-T--G-AGTAAC-A-G------AA-AAAA-G-ATT--AT-AACCT-CCAG-GCCTG
gi|127811 : taGAG-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAC-AACCT-CCAG-GCCTG
gi|127810 : GAG-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---TA-AAAA-G-TTT-TAT-AACTC-CCAG-GCC
gi|127812 : GAG-T-TT--G-AGTA--TAAG-AA-AAC-GTGCTC---CA-AAAA-G-TTT-TAT-AACCT-CCAG-GC
gi|127809 : GAA-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-ATTCT-CCA--GCCTG
gi|127817 : cGAG-T-CT--A-AGTA--T--G-AA-AAT-GTGCTC---AT-AAAA-G-TTT-TAT-AATCA-CCAG-GCCTG
gi|127816 : GAG-T-GT--G-AGTA--T--G-A------GTACAG---AA-AAAA-GTTTT-TAT-AA-CT-CCAG-GCC
gi|127807 : AG-C-TT--G-AGTA--T--G-AG-AAC-GTGCTC---CA-AAAA-G-ACT-TAT-AACCT-CCAG-GCCT
gi|127820 : acgcAG-A-TT--G-AGTA--T--G-A------GTGC-A---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127800 : AG-T-CC--G-AGTA--G--G-AA-AAT-GTGCTC---AA-AAAAAG-CTT-TAT-AACCT-CCAG-GC
gi|127819 : AG-T-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCCG
gi|127821 : AG-T-TTTGG-AGTA--T--G-AA-TAC-AAA------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127822 : G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-TACCT-CCAG-GCCTG
gi|127806 : -TT--G-AGTA--T--GAAA-AAC-GT-CTC---AA-CAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127780 : acggat-TT--G-AGTA--T--G-A------GTA-TC---GT-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127795 : agtacaagtt-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTTGTAT-ATCCT-CCAG-GCC
gi|127823 : agtacgacaatT--A-AGTA--T--G-AG-TAC-A--------GA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127814 : --G-AGTAGTT--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAT-AACCT-CTAG-GCCTG
gi|127815 : --G-AGTT--T--G-AA-AAC-ATGCTC---GA-AAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127802 : -AGTT--T--G-AG-AAC-AAGTAC---AGTAAAA-G-TTT-TAT-AACCT-CTAA-GCCTG
gi|127824 : gtacaTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
Alignments
lowQualScore : 111111111111111
lowQualScore : 1 11 0 1 11 0 11 00 0 444444444444444 1 1 1 0 1 0 0
lowQualScore : . .. . . .. . .. .. . ............... . . . . . . .
lowQualScore : 0 00 7 5 66 7 66 99 7 444444444444444 4 4 4 7 4 7 7
consensus : AGTNCGA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
Reference ( family-380 ) : AGTNCGA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127766 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127767 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTA---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127768 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127769 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127770 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127771 : AGTACGA--G-T-TT--G-AATT--T--G-A------GTACTG---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127772 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GTCTG
gi|127773 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAG-G-TTT-TAT-AACCT-CCAG-GCC
gi|127774 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127775 : AGTACGA--G-T-TT--G-AGTA--C--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCC-CCAG-GC
gi|127776 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-ATCT
gi|127777 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-A-G------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127778 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127779 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127780 : AGTACAA--G-T-TTT-G-AGTA--T--G-A------GTA-TC---GT-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127781 : AGTTTGA--G-C-TT--G-AGTA--C--G-AA--------CTC---AA-AA-A-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127782 : agtacaaAGTTTGA--G-C-TT--G-AGTA--C--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-GACCT-CCAG-GCCTG
gi|127783 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-TA--GAG-------A-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127784 : AGTTTGA--G-T-CT--G-AGTA--T--G-AA-AAC-CTGATCA--AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCCTG
gi|127785 : AGTACGA--G-T-TT--GGAGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-ATCCC-CCAG-GCC
gi|127786 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GCACTC---AA-GAAA-G-CTT-TAT-AACTT-CCAG-GC
gi|127787 : AGTACGA--G-T-TT--C-AGTA--T--G-A------GTACAG---AA-AAAATG-TTT-TAT-AACCT-CCAG-
gi|127788 : AGTACGA--G-T-TT--G-AGTA--T--G-A-------TACAA---GA-AAAA-G-TTT-TATAAACCT-CCAG-GC
gi|127789 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCC
gi|127790 : AGTACGA--G-T-TT--G-AGTA--T--G-AA-TA-------C---AATAAAG-G-TCT-TAT-AACCT-GCAG-GCC
gi|127791 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGATC---AA-AAGA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127792 : AGTACGA--G-T-TT--G-AGTA--T--G-AT-TAC-G-GT--------AAAA-G-TTT-TAT-AGCCT-CCAC-GCC
gi|127793 : AGTACGA--G-T-TT--G-AATA--T--G-AG-TACAGT----------AAAA-G-TTT-TAC-AACCG-CTAG-GCC
gi|127794 : AGTACGA--G-T-TT--G-AGTA--T--G-AG-TAT-G-G------AA-AAAA-GTTTT-TATGAACTC-CCAGTGCCT
gi|127795 : AGTACGACAA-T-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTTGTAT-ATCCT-CCAG-GCC
gi|127796 : AGTTTGA--G-C-TT--G-AGCA--T--G-AA-AAC-GTGCTC---AA-GATA-G-TTT-TAT-AACCT-CTAG-GCC
gi|127797 : AGTTTGA--G-TCTT--G-AGTA--T--A-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAC-AACCT-CCAG-GCC
gi|127798 : AGTACAA--G-T-TT--G-AGTA--T--G-AG-TA---TGGT-------AGAA-G-TCT-CAT-AACCT-CTAG-GCC
gi|127799 : AGTTTGA--G-C-TT--G-AGTG--T--G-AA-AAC-GCGCTC---AA-AAAA-G-CTT-TAT-AACAT-CCAG-ACCTG
gi|127800 : A--G-T-CC--G-AGTA--G--G-AA-AAT-GTGCTC---AA-AAAAAG-CTT-TAT-AACCT-CCAG-GC
gi|127801 : AGTACGA--G-T-TT--C-AGGA--T--G-AG-TAC-G-GT--------AAAA-G-TTT-TGT-AACCT-CAAG-
gi|127802 : GTACAA--G-T-TT--G-AG------------AAC-AAGTAC---AGTAAAA-G-TTT-TAT-AACCT-CTAA-GCCTG
gi|127803 : --G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127804 : tatgcTATGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-C
gi|127805 : TATGA--G-T-TT--G-AGTAG-T--G-AGTAAC-A-G------AA-AAAA-G-ATT--AT-AACCT-CCAG-GCCTG
gi|127806 : CGG--A-T-TT--G-AGTA--T--GAAA-AAC-GT-CTC---AA-CAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127807 : aA--G-C-TT--G-AGTA--T--G-AG-AAC-GTGCTC---CA-AAAA-G-ACT-TAT-AACCT-CCAG-GCCT
gi|127808 : acgcCGA--G-T-TC--G-AGCT--T--G-AA---------TC---AA-AAAA-G-TTT-TAT-AACCT-TCAG-CCCTG
gi|127809 : CGA--A-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-ATTCT-CCA--GCCTG
gi|127810 : GA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---TA-AAAA-G-TTT-TAT-AACTC-CCAG-GCC
gi|127811 : GA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAC-AACCT-CCAG-GCCTG
gi|127812 : GA--G-T-TT--G-AGTA--TAAG-AA-AAC-GTGCTC---CA-AAAA-G-TTT-TAT-AACCT-CCAG-GC
gi|127813 : AGTTTGA--GAC-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127814 : g--G-AGTAGTT--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAT-AACCT-CTAG-GCCTG
gi|127815 : --G-AGTT--T--G-AA-AAC-ATGCTC---GA-AAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127816 : GA--G-T-GT--G-AGTA--T--G-A------GTACAG---AA-AAAA-GTTTT-TAT-AA-CT-CCAG-GCC
gi|127817 : GA--G-T-CT--A-AGTA--T--G-AA-AAT-GTGCTC---AT-AAAA-G-TTT-TAT-AATCA-CCAG-GCCTG
gi|127818 : AGTTTGA--G-CATT--G-AGTA--T--G-AA-A-C-GTGCCCTCAAA-AAAA-G-TTT-TAT-AACCTCCCAG-GCCTG
gi|127819 : gA--G-T-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCCG
gi|127820 : A--G-A-TT--G-AGTA--T--G-A------GTGC-A---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127821 : A--G-T-TTTGG-AGTA--T--G-AA-TAC-AAA------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127822 : --G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-TACCT-CCAG-GCCTG
gi|127823 : T--A-AGTA--T--G-AG-TAC-A--------GA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127824 : TC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
Alignments
lowQualScore : 111111111111111
lowQualScore : 1 11 0 1 11 0 11 00 0 444444444444444 1 1 1 0 1 0 0
lowQualScore : . .. . . .. . .. .. . ............... . . . . . . .
lowQualScore : 0 00 7 5 66 7 66 99 7 444444444444444 4 4 4 7 4 7 7
consensus : AGTNCGA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
Reference ( family-380 ) : AGTNCGA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127766 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127767 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTA---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127768 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127769 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127770 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127771 : AGTACGA--G-T-TT--G-AATT--T--G-A------GTACTG---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127772 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GTCTG
gi|127773 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAG-G-TTT-TAT-AACCT-CCAG-GCC
gi|127774 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127775 : AGTACGA--G-T-TT--G-AGTA--C--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCC-CCAG-GC
gi|127776 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-ATCT
gi|127777 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-A-G------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127778 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127779 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127780 : AGTACAA--G-T-TTT-G-AGTA--T--G-A------GTA-TC---GT-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127781 : AGTTTGA--G-C-TT--G-AGTA--C--G-AA--------CTC---AA-AA-A-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127782 : agtacaaAGTTTGA--G-C-TT--G-AGTA--C--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-GACCT-CCAG-GCCTG
gi|127783 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-TA--GAG-------A-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127784 : AGTTTGA--G-T-CT--G-AGTA--T--G-AA-AAC-CTGATCA--AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCCTG
gi|127785 : AGTACGA--G-T-TT--GGAGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-ATCCC-CCAG-GCC
gi|127786 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GCACTC---AA-GAAA-G-CTT-TAT-AACTT-CCAG-GC
gi|127787 : AGTACGA--G-T-TT--C-AGTA--T--G-A------GTACAG---AA-AAAATG-TTT-TAT-AACCT-CCAG-
gi|127788 : AGTACGA--G-T-TT--G-AGTA--T--G-A-------TACAA---GA-AAAA-G-TTT-TATAAACCT-CCAG-GC
gi|127789 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCC
gi|127790 : AGTACGA--G-T-TT--G-AGTA--T--G-AA-TA-------C---AATAAAG-G-TCT-TAT-AACCT-GCAG-GCC
gi|127791 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGATC---AA-AAGA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127792 : AGTACGA--G-T-TT--G-AGTA--T--G-AT-TAC-G-GT--------AAAA-G-TTT-TAT-AGCCT-CCAC-GCC
gi|127793 : AGTACGA--G-T-TT--G-AATA--T--G-AG-TACAGT----------AAAA-G-TTT-TAC-AACCG-CTAG-GCC
gi|127794 : AGTACGA--G-T-TT--G-AGTA--T--G-AG-TAT-G-G------AA-AAAA-GTTTT-TATGAACTC-CCAGTGCCT
gi|127795 : AGTACGACAA-T-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTTGTAT-ATCCT-CCAG-GCC
gi|127796 : AGTTTGA--G-C-TT--G-AGCA--T--G-AA-AAC-GTGCTC---AA-GATA-G-TTT-TAT-AACCT-CTAG-GCC
gi|127797 : AGTTTGA--G-TCTT--G-AGTA--T--A-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAC-AACCT-CCAG-GCC
gi|127798 : AGTACAA--G-T-TT--G-AGTA--T--G-AG-TA---TGGT-------AGAA-G-TCT-CAT-AACCT-CTAG-GCC
gi|127799 : AGTTTGA--G-C-TT--G-AGTG--T--G-AA-AAC-GCGCTC---AA-AAAA-G-CTT-TAT-AACAT-CCAG-ACCTG
gi|127800 : A--G-T-CC--G-AGTA--G--G-AA-AAT-GTGCTC---AA-AAAAAG-CTT-TAT-AACCT-CCAG-GC
gi|127801 : AGTACGA--G-T-TT--C-AGGA--T--G-AG-TAC-G-GT--------AAAA-G-TTT-TGT-AACCT-CAAG-
gi|127802 : GTACAA--G-T-TT--G-AG------------AAC-AAGTAC---AGTAAAA-G-TTT-TAT-AACCT-CTAA-GCCTG
gi|127803 : --G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127804 : tatgcTATGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-C
gi|127805 : TATGA--G-T-TT--G-AGTAG-T--G-AGTAAC-A-G------AA-AAAA-G-ATT--AT-AACCT-CCAG-GCCTG
gi|127806 : CGG--A-T-TT--G-AGTA--T--GAAA-AAC-GT-CTC---AA-CAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127807 : aA--G-C-TT--G-AGTA--T--G-AG-AAC-GTGCTC---CA-AAAA-G-ACT-TAT-AACCT-CCAG-GCCT
gi|127808 : acgcCGA--G-T-TC--G-AGCT--T--G-AA---------TC---AA-AAAA-G-TTT-TAT-AACCT-TCAG-CCCTG
gi|127809 : CGA--A-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-ATTCT-CCA--GCCTG
gi|127810 : GA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---TA-AAAA-G-TTT-TAT-AACTC-CCAG-GCC
gi|127811 : GA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAC-AACCT-CCAG-GCCTG
gi|127812 : GA--G-T-TT--G-AGTA--TAAG-AA-AAC-GTGCTC---CA-AAAA-G-TTT-TAT-AACCT-CCAG-GC
gi|127813 : AGTTTGA--GAC-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127814 : g--G-AGTAGTT--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAT-AACCT-CTAG-GCCTG
gi|127815 : --G-AGTT--T--G-AA-AAC-ATGCTC---GA-AAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127816 : GA--G-T-GT--G-AGTA--T--G-A------GTACAG---AA-AAAA-GTTTT-TAT-AA-CT-CCAG-GCC
gi|127817 : GA--G-T-CT--A-AGTA--T--G-AA-AAT-GTGCTC---AT-AAAA-G-TTT-TAT-AATCA-CCAG-GCCTG
gi|127818 : AGTTTGA--G-CATT--G-AGTA--T--G-AA-A-C-GTGCCCTCAAA-AAAA-G-TTT-TAT-AACCTCCCAG-GCCTG
gi|127819 : gA--G-T-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCCG
gi|127820 : A--G-A-TT--G-AGTA--T--G-A------GTGC-A---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127821 : A--G-T-TTTGG-AGTA--T--G-AA-TAC-AAA------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127822 : --G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-TACCT-CCAG-GCCTG
gi|127823 : T--A-AGTA--T--G-AG-TAC-A--------GA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127824 : TC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
blockSeqs : T CA C TG GT AACGTGCCCTCA T T T A
blockSeqs : A . A T G AAACCTGATCA T A T G
blockSeqs : T . . . . AAACGTGCTA . . . .
blockSeqs : A . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AAACGTGCTC . . . .
blockSeqs : T . . . . AAACGTGCTC . . . .
blockSeqs : T . . . . AAACGTGCTC . . . .
blockSeqs : T . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AAACGTGCTC . . . .
blockSeqs : T . . . . AAACGCACTC . . . .
blockSeqs : C . . . . AAACATGCTC . . . .
blockSeqs : C . . . . AAACGTGATC . . . .
blockSeqs : C . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AAACATGCTC . . . .
blockSeqs : T . . . . AAACGCGCTC . . . .
blockSeqs : T . . . . AAATGTGCTC . . . .
blockSeqs : C . . . . GAACGTGCTC . . . .
blockSeqs : T . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AAACGTGCTC . . . .
blockSeqs : T . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AAACGTGCTC . . . .
blockSeqs : T . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AAACATGCTC . . . .
blockSeqs : T . . . . AAATGTGCTC . . . .
blockSeqs : A . . . . AAACGTGCTC . . . .
blockSeqs : A . . . . AACAAGTAC . . . .
blockSeqs : A . . . . AAACGTCTC . . . .
blockSeqs : A . . . . GCACAGA . . . .
blockSeqs : T . . . . GCACAGA . . . .
blockSeqs : T . . . . TTACGGT . . . .
blockSeqs : A . . . . GTACAGT . . . .
blockSeqs : T . . . . GTATGGT . . . .
blockSeqs : A . . . . GTACGGT . . . .
blockSeqs : A . . . . GTAACAG . . . .
blockSeqs : A . . . . ATACAAA . . . .
blockSeqs : A . . . . GTACAG . . . .
blockSeqs : T . . . . GTACAG . . . .
blockSeqs : T . . . . GTACTG . . . .
blockSeqs : . . . . GTACAG . . . .
blockSeqs : . . . . GCACAG . . . .
blockSeqs : . . . . GTAGAG . . . .
blockSeqs : . . . . ATACAG . . . .
blockSeqs : . . . . GTACAG . . . .
blockSeqs : . . . . GTATGG . . . .
blockSeqs : . . . . ATACAG . . . .
blockSeqs : . . . . GTACAG . . . .
blockSeqs : . . . . GTACAG . . . .
blockSeqs : . . . . GTACAG . . . .
blockSeqs : . . . . ATACAG . . . .
blockSeqs : . . . . GTATC . . . .
blockSeqs : . . . . TACAA . . . .
blockSeqs : . . . . GTGCA . . . .
blockSeqs : . . . . GTACA . . . .
blockSeqs : . . ACTC . . . .
blockSeqs : . . ATAC . . . .
blockSeqs : . . ATC . . . .
blockSeqs : . . . .
blockSeqCons : AAACGTGCTC*****
originalCons : AGTNCGA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
finalCons : AGTNCGA--G-T-TT--G-AGTA--T--G-AAAACGTGCTC-----AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
Alignments
lowQualScore : 111111111111111
lowQualScore : 1 11 0 1 11 0 11 00 0 444444444444444 1 1 1 0 1 0 0
lowQualScore : . .. . . .. . .. .. . ............... . . . . . . .
lowQualScore : 0 00 7 5 66 7 66 99 7 444444444444444 4 4 4 7 4 7 7
consensus : AGTNCGA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
Reference ( family-380 ) : AGTNCGA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127766 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127767 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTA---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127768 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127769 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127770 : AGTACGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127771 : AGTACGA--G-T-TT--G-AATT--T--G-A------GTACTG---AA-AAAA-G-TTT-TAT-AACCT-TCAG-GCC
gi|127772 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GTCTG
gi|127773 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAG-G-TTT-TAT-AACCT-CCAG-GCC
gi|127774 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127775 : AGTACGA--G-T-TT--G-AGTA--C--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCC-CCAG-GC
gi|127776 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-ATCT
gi|127777 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-A-G------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127778 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127779 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-CAC-AGA------AA-AAAA-G-TTT-TTT-AACCT-CCAG-GCCTG
gi|127780 : AGTACAA--G-T-TTT-G-AGTA--T--G-A------GTA-TC---GT-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127781 : AGTTTGA--G-C-TT--G-AGTA--C--G-AA--------CTC---AA-AA-A-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127782 : agtacaaAGTTTGA--G-C-TT--G-AGTA--C--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-GACCT-CCAG-GCCTG
gi|127783 : AGTCCGA--G-T-TT--G-AGTA--T--G-AG-TA--GAG-------A-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127784 : AGTTTGA--G-T-CT--G-AGTA--T--G-AA-AAC-CTGATCA--AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCCTG
gi|127785 : AGTACGA--G-T-TT--GGAGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-ATCCC-CCAG-GCC
gi|127786 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GCACTC---AA-GAAA-G-CTT-TAT-AACTT-CCAG-GC
gi|127787 : AGTACGA--G-T-TT--C-AGTA--T--G-A------GTACAG---AA-AAAATG-TTT-TAT-AACCT-CCAG-
gi|127788 : AGTACGA--G-T-TT--G-AGTA--T--G-A-------TACAA---GA-AAAA-G-TTT-TATAAACCT-CCAG-GC
gi|127789 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAT-AATCT-CCAG-GCC
gi|127790 : AGTACGA--G-T-TT--G-AGTA--T--G-AA-TA-------C---AATAAAG-G-TCT-TAT-AACCT-GCAG-GCC
gi|127791 : AGTTTGA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGATC---AA-AAGA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127792 : AGTACGA--G-T-TT--G-AGTA--T--G-AT-TAC-G-GT--------AAAA-G-TTT-TAT-AGCCT-CCAC-GCC
gi|127793 : AGTACGA--G-T-TT--G-AATA--T--G-AG-TACAGT----------AAAA-G-TTT-TAC-AACCG-CTAG-GCC
gi|127794 : AGTACGA--G-T-TT--G-AGTA--T--G-AG-TAT-G-G------AA-AAAA-GTTTT-TATGAACTC-CCAGTGCCT
gi|127795 : AGTACGACAA-T-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTTGTAT-ATCCT-CCAG-GCC
gi|127796 : AGTTTGA--G-C-TT--G-AGCA--T--G-AA-AAC-GTGCTC---AA-GATA-G-TTT-TAT-AACCT-CTAG-GCC
gi|127797 : AGTTTGA--G-TCTT--G-AGTA--T--A-AA-AAC-ATGCTC---AA-AAAA-G-TTT-TAC-AACCT-CCAG-GCC
gi|127798 : AGTACAA--G-T-TT--G-AGTA--T--G-AG-TA---TGGT-------AGAA-G-TCT-CAT-AACCT-CTAG-GCC
gi|127799 : AGTTTGA--G-C-TT--G-AGTG--T--G-AA-AAC-GCGCTC---AA-AAAA-G-CTT-TAT-AACAT-CCAG-ACCTG
gi|127800 : A--G-T-CC--G-AGTA--G--G-AA-AAT-GTGCTC---AA-AAAAAG-CTT-TAT-AACCT-CCAG-GC
gi|127801 : AGTACGA--G-T-TT--C-AGGA--T--G-AG-TAC-G-GT--------AAAA-G-TTT-TGT-AACCT-CAAG-
gi|127802 : GTACAA--G-T-TT--G-AG------------AAC-AAGTAC---AGTAAAA-G-TTT-TAT-AACCT-CTAA-GCCTG
gi|127803 : --G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127804 : tatgcTATGA--G-T-TT--G-AGTA--T--G-A------GTACAG---AA-AAAA-G-TTT-TAT-AACCT-C
gi|127805 : TATGA--G-T-TT--G-AGTAG-T--G-AGTAAC-A-G------AA-AAAA-G-ATT--AT-AACCT-CCAG-GCCTG
gi|127806 : CGG--A-T-TT--G-AGTA--T--GAAA-AAC-GT-CTC---AA-CAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127807 : aA--G-C-TT--G-AGTA--T--G-AG-AAC-GTGCTC---CA-AAAA-G-ACT-TAT-AACCT-CCAG-GCCT
gi|127808 : acgcCGA--G-T-TC--G-AGCT--T--G-AA---------TC---AA-AAAA-G-TTT-TAT-AACCT-TCAG-CCCTG
gi|127809 : CGA--A-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-ATTCT-CCA--GCCTG
gi|127810 : GA--G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---TA-AAAA-G-TTT-TAT-AACTC-CCAG-GCC
gi|127811 : GA--G-T-TT--G-AGTA--T--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAC-AACCT-CCAG-GCCTG
gi|127812 : GA--G-T-TT--G-AGTA--TAAG-AA-AAC-GTGCTC---CA-AAAA-G-TTT-TAT-AACCT-CCAG-GC
gi|127813 : AGTTTGA--GAC-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127814 : g--G-AGTAGTT--G-AA-AAC-GTGCTC---GA-AAAA-G-TTT-TAT-AACCT-CTAG-GCCTG
gi|127815 : --G-AGTT--T--G-AA-AAC-ATGCTC---GA-AAAA-G-TTT-TAT-AACC--CCAG-GCCTG
gi|127816 : GA--G-T-GT--G-AGTA--T--G-A------GTACAG---AA-AAAA-GTTTT-TAT-AA-CT-CCAG-GCC
gi|127817 : GA--G-T-CT--A-AGTA--T--G-AA-AAT-GTGCTC---AT-AAAA-G-TTT-TAT-AATCA-CCAG-GCCTG
gi|127818 : AGTTTGA--G-CATT--G-AGTA--T--G-AA-A-C-GTGCCCTCAAA-AAAA-G-TTT-TAT-AACCTCCCAG-GCCTG
gi|127819 : gA--G-T-TT--G-AGTA--T--G-AA-TAC-A-G------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCCG
gi|127820 : A--G-A-TT--G-AGTA--T--G-A------GTGC-A---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127821 : A--G-T-TTTGG-AGTA--T--G-AA-TAC-AAA------AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCC
gi|127822 : --G-C-TT--G-AGTA--T--G-AA-AAC-GTGCTC---AA-AAAA-G-TTT-TAT-TACCT-CCAG-GCCTG
gi|127823 : T--A-AGTA--T--G-AG-TAC-A--------GA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG
gi|127824 : TC---AA-AAAA-G-TTT-TAT-AACCT-CCAG-GCCTG