lowQualScore : 1111111111111111111111111 11111111111111111111111111111111111111111111111 1111111111 33333333333333333333333333333333 22222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111 3333333333333 11111 55555555555555 1111 0000000000000000000000000 333333 2222 44444444444444444444444444444444444444444444444 3 22222 444444444444444 1 444444444 2 4 222 6666666666 4 2 444444 1 22 44444444 4 9999999999999 2 1 4 4 666 55 11 444444 1 22 1 2 33 88888888888 33 1 222 44 22222 1 1 2 4 4 1 4 22222 11 4 4 4 1 1 1 1 4 0000000000 444 44444 1 1 1 44 4 1 33 4444 1 2 1 666666 222 22222222222222222222222222222222 2 2 4 1 2 2 11 222 33 4444 11 1 666666666666666666666666666 4 33 2222 2 222 2 66666 55555555555 4444444444444 44 11111 11 2 11 44 22 444444444444444 11 2222 2 3333333333 11 4444444444444444444 11 11111 333 1 1111 1 1 33333333333333333333333333333333333333333333333333333333333333333333333 1 1 4 33 2 2222 1 333333 1
lowQualScore : 6 77 77 5 5 3 8888 77 5 000 5 7777777777777 5 5 44444 66666666666666 5 77 4444 6 6 6 9999999999999999999999999 1 0 6 111111 77 1 5 5 9999 99 6 0 8 55555555555555555555555555555555555555555555555 2 8 0 33333 8 8 8 8 444444444444444 5 555555555 0 0 666 2 4444444444 0 0 777777 0 3 22 77777777 2 0 3333333333333 4 0 2 5 6 0 0 6 111 3 55 77 3 444444 4 7 6 77 4 2 7 0 11 66666666666 11 88 5 3 555 4 2 66 77777 5 5 4 0 2 0 6 6 0 6 5 0 6 6 6 6 77777 22 0 0 0 5 5 6 5 7 6 0 6 2222222222 666 55555 6 7 6 6 6 5 0 33 0 5 55 4 4 2222 5 0 5 222222 6 222 22222222222222222222222222222222 0 0 0 5 0 0 2 88 111 8888 11 9999 33 3 222222222222222222222222222 0 55 4444 6 555 8 0 00000 7 77777777777 0000000000000 66 99999 88 3 22 0 77 7 00 666666666666666 6 00 7777 66 55 777 2 66 4 0 7777777777 4 66 00 4 4 99 4 4 0000000000000000000 66 777 88 0 33333 3 444 5 5 5 2 4444 5 0 1 3 44444444444444444444444444444444444444444444444444444444444444444444444 3 6 6 0 88 5 5555 0 888888 3
lowQualScore : . .. .. . . . .... .. . ... . ............. . . ..... .............. . .. .... . . . ......................... . . . ...... .. . . . .... .. . . . ............................................... . . . ..... . . . . ............... . ......... . . ... . .......... . . ...... . . .. ........ . . ............. . . . . . . . . ... . .. .. . ...... . . . .. . . . . .. ........... .. .. . . ... . . .. ..... . . . . . . . . . . . . . . . . ..... .. . . . . . . . . . . . .......... ... ..... . . . . . . . .. . . .. . . .... . . . ...... . ... ................................ . . . . . . . .. ... .... .. .... .. . ........................... . .. .... . ... . . ..... . ........... ............. .. ..... .. . .. . .. . .. ............... . .. .... .. .. ... . .. . . .......... . .. .. . . .. . . ................... .. ... .. . ..... . ... . . . . .... . . . . ....................................................................... . . . . .. . .... . ...... .
lowQualScore : 7 99 99 7 7 9 0000 99 7 000 7 3333333333333 7 7 33333 00000000000000 7 99 2222 7 7 7 2222222222222222222222222 0 6 7 777777 99 7 7 7 8888 22 7 8 0 00000000000000000000000000000000000000000000000 0 0 8 00000 0 0 0 0 888888888888888 0 000000000 0 0 555 5 5555555555 0 0 000000 5 0 55 55555555 5 0 0000000000000 0 0 5 0 0 0 0 0 000 0 00 55 0 000000 0 0 0 55 0 5 0 0 55 00000000000 00 55 5 0 000 0 5 00 00000 5 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 00000 00 0 0 0 0 0 0 0 0 0 0 0 0000000000 000 00000 0 0 0 0 0 0 5 00 0 5 55 0 0 5555 5 0 0 000000 0 000 55555555555555555555555555555555 0 0 0 0 0 0 5 55 888 3333 77 0000 33 3 000000000000000000000000000 0 33 3333 7 777 7 7 33333 3 00000000000 7777777777777 00 33333 33 3 00 7 00 3 77 000000000000000 7 66 5555 99 22 888 2 11 4 1 3333333333 4 11 99 4 4 99 4 4 9999999999999999999 11 888 44 1 33333 1 444 0 0 5 5 5555 0 0 7 3 44444444444444444444444444444444444444444444444444444444444444444444444 2 0 0 0 00 0 2222 6 333333 3
consensus : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGT---NAAT-A---C-ACAGA-CTGT-----CAGAT-T--A-------T-A--CTAGG----CAC-A-GACAAG-CACTAATATG--TTGTATA-ATTAT----TTTAAAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--T-GAAT-AG----------------------T--AACGTACGGCTAAACTAC-G--CTAACAGAGCAT-CAAATAGAGCAGCA---TG-CAC-AACAT-AT-ACAG-TTAC-ACTGG-A-CAAAAANGAGAGGAGCAGA----CA-AACTGAACGAAATCAACC-ACACAACATGACACAGNNTTATANCAGACACTCCTAAACTGAAC-ATGACTGTATTACATCCACATGCNTNCCNAATTCCAGTGANTGCAACGAGGNTCT-TAAAATGCGNANGGTATACATANTTATNATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCGTAAG--CGCTGGTCCTGACTNTGGGNACATCTAAAATGTTACTTATA-TCTNAAACTATATGATGAACTCTAATAAGAGTANCTAAATCCGACAGACAGTTTGGGGAAAGGCCATGGATAATTTTNTAAACACTCAATAGCCTNTTAGCCATGGTTCTCATTCTTTTGAATTTTNAGAGTTNGNNAAATTNGNTT-GATGTAGAGGATCTTCATAAGAACANTGGTTAGTNATCATAA-ATAAATCTTAGCGTTCGTTCTTAGA-TATGCTGCATCTTAG-ATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--CA-CCAATTCTTTTCA-GAACATTAAAAT-GTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACCCCCAGAGNCTTT-ACAGACTCTTCACACTAANANTTCAGCATTTTTTTCCGATTCTAAAAAACAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGCAGT-GCTTG-----TGTATCG--------AAATTTGCTGGGATTCGGCCTGCATACAATTGTCCCCTGAACNATTTGATTTTAAAACGTTGCTCTCTTCTTGCAATACA--AAATAAGC-TTGTTGGAAATTCTCATGAC-AGG-AAGATA-ATGT-T-TG-------TCATCAGCATAAT-TATAGAG-TGTTCC-T-GTTTGATGAAATAAAA--TAT-ATTATTAATAAAAGCATTAAA-----CAAAAGAGGAC-CAAGT-TG-GCCCTTG-TGGAA-CCCTT-TCTTGATAC-CCGACCAGCTGCTC-GGACTCC--ATTGATTTTTACCTGCTGTGAACGACAAGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAG-CCGT-G-CCGAAAGTTTACATAAAAG-AATA--T-CA---TGTGG--C-AGGC-A-TCGNAA-GC-TT--T-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT---TCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTGAA-AGCAC-TA--AAATAACAAAGGT-------------TGGAAAATAT---CAT-C-AAAATATT-CTTG--ACCAACTGTACGGACATGTACCTTTTCATAGATTTTCGA-AATGGCCGGGTTAAAATAN-NTTACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
Reference ( gi|1 ) : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGT---TAAT-A---C-ACAGA-CTGT-----CAG------A-------T-A--CTAGG----CAC-A-GACAAG-CACTGATATG--CTGTATATATTAT---GTTTAAAGAT-GTTGA-----A--AAACACTAAAAG-TA-TGGTAAATGAATG-T-GTG--T-AAAT-AG----------------------T--AACATATGGCTAAACT------CTAACAGAG-AT-CAAATAGAGCAGTA---TG-CAC-AACAT-AT-ACAGTTTAC-ACT-G-A-CAAAAACGAAAGGAACAAA----CA-AACTGAACAAAA-CAACTTACACAACATGACACAGAG-TATACCAG---TT--TAGACTGAACGATG-CTGTA--ACACCCACATGCCTTCCC-ATTCCAG-GAGGAC-ATGAGGCTCTATAAAATGTGTAA---------AATT-TGATTCAGATCTAAAATGTTCTGGAAGCTCATTCCATAAAAC-GCAGAATGCATAATCTTAAAAGACTTTTTACCATAAGAGTGCTGGTCCTGACTCGAGGTACATCTAAAATGTTACTTATAGTCTAAAACTATAAGGTGAATTCT--TAAGAGTAACTAAATCTGACAGACAGTTTGGGGAAAGGTCAAGGATAA-TTTA-AAACACTCAA------AT--ACCATGGTTCTCATTCTTTTGAATTTCCAGAGTTTGGC-AATTTGCTCAGATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTCCATCTTAGGACGTACTACCTTGACTCACAAAAATGCCATGCCAT-GGACAAAAATATAAAAGTGGGAGAGAATAAAATATGAAAGATAGTAAATCTGCTTGTGTTTAGATAGAAATAAGCAACCA--TCTTTTAAAGAACATTATAGTTGTTGAGCAGCCTTTCTGCAAATGTTAGTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAAACTTTAACAGA-TCTTCACA-TAATATTTCAGCATTTT----CAATTTTAAAAA-CAGGCTCTCTTTTATA-GTTGGTCCATACCAAACAGCAATAGCTTGGGAGCTGTATCGCCTCATTAGAATTTGCTGGGA-TCG-CCTGC-TACAATGGT-CC-TGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA--AAATAA---TTGTTGGAAATTCTCATGAC-AG--AGGATA-ATGTAT-TG-------TCATCAGCATAATATATAGAGGTGTTCC-T-GTTTGAT-AAATAAAA--TATTATCATTAATAAAAGCATTAAA-A---CAAAAGAGGACTCAAGTATGGACCCTTGATGGAACCCCTT-TCTTGATATGCTGACCAGCTGCTCAAGGATCC--ATTGAGTTTTACCTGCTGTAGACGACAGGACAGGTTTAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAACCCGTAGGCTGAAAGTTTACATAAACG-GATA--T-CA---TG-GG--C-AGGC-A-TCAAAAAGC-TT--T-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTAAATTTTGATCTAAC----GCATATT--GTCC-AA-TCATCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AGCACATAAAAAATAACAAAGGTGA-----AACAAGGGAAAAATAT---CATGCAAAAATATT-CTTG--A-AAACTGTACAGACATG-ACCTTTTCATAGATTTTCGACAATGGC--GGTGAAAATAC-CTTACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|2 : AACG-ATAA--AGC--A-ACACAAAA-CGG------TATT--AAACTA-CCA---TAT-GGT---AAAC-AA--C-ACAGA-CTGT-----CAG------A-------T-ATACTTGG----CAC-A-GACAAG-CACTAACATG----GTATC--------------AAGAT-GTTGC-----A--AAACACTAAAAG-TA-TAGTAAGTGATTG---GTG--T-GAAT-AGAATTAGTCTAGAGCAACACTATC--AACGTATGG-TAAACTATGGCATTAATGCAGCAT-TAACTAGAGCAACA---TG-CAC-AGCAT-AT-ACA--------CT-G-AACAAAAACAAAAGGGACGTA----TA-AACTGAACGAAATCAACC-ACACAACATGACACAGTT-TATAATAAACACT--TAAATTGAAT-ATA-CTGTA---CATTTATATGCGTTCCA-ATTCCAA-GAT-AT-ATGAAGATCT-TAAAATGTGAAC---------ATTT-TTATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCATAAG--CGCTGGTCCTGACTATAGGGACATCTAAAATGTTACT-ATA-TTTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCTGACAAACAGTTTGGGGAAAGGTCATGGATAA-TTTTTAAACACTCAATAGCCTATTAGCCATGGTTCTCATTCTTTTGA-TTTTCAGAGTTGGTA-AATTAGATT-GATGTAGAAGATCTTCATAAGAACATTGG-TAGTCATTATAA-ATAAATCTTAGCGTTCGTTCTTAGA-TATGCTGCATCTTAG-ATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--CA-CCAATTCTTTTCA-GAACATTAAAAT-GTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACTCCCAGAAGCTTT-ACAGACTCTTCACA--AAAAATTCAGCATTTT----CGATTCT-AAAA-CAGGTTCTCTTTTATATGTT--TTCATACC-AACAGCAG------------TGTATTG--------AAATTTGTTGGGATTCG-CCTGCATACAATTGTCCC-TGAACCATTTGA--TTAAAATATTGCTCTCTTTTTGTAATACAG-AAATAAGT-TTGTT-GAAATTCTCATGGC-AGA-AAGAAA-ATGTTT-TGAGCATAATTATCAGCATAAT-TATAGA-GTGTTCCTT-GTTTGATGAAATAAAATGTATCATTATTAATAAAAGCATTAAACAAATTAAAAGAGGAC-CAAGTATGGGCCTTTG-TGGAACCCCCTATCTTGATAC-CCGACCACTTGCTCCGAACTCC--AGTGATTTTCACTGACTGTGAACGACAAGACAGG--TGATTTCCCAAAAGTTCTACCGA-TTT-TGAA----------------AAA--------AAA-G-AATA--T-GA---TGTGG--C-CTGCAA-TC-AAAAGC-TT--T--G-AAA-GATCCATTAA-A-A-------CA---G---C-TG--C---CACATGTAAATTTTGATCTAAC----GCATATT---TCC-AA-TCCTGTGGCAGA---C-GG-AGCAATGTG
gi|12 : aAAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GG----TAATAA---C-ACAGA-CTGT-----CAGATCTATA-------T-A--CTAGG----CAC-A-GACAAG-CACTAATATG----GTATA-AT-------TTTAAAGAT-GTTGGCTTGCA--AAGCACTAAAAG-TA-TGGTAAATGAATG---GTG--T-AA---AG----------------------T--AA------ACTA----------CTAACAGAGCAT-CAAATAGAGCAGCA---TG-CAC-AACAT-AT-ACAG-TTAC-AATGG-A-CAAAAAAGAAAGGAACA
gi|11 : aAAGG-ATAA--AGC--A--CACAAAG-CG-AA--TGTATT--AAACTA-TCA---CAA-GG----TAA--A---C-ACAGA-CT-T-----CAGATAT--A-------T-A--CTAGG----CACAA-GACAAGACACTAATATG----GT-TATA--AT----TTTAAAGAT-GTTAA-----ATGAAGCACTAAAAG-TA-TGGTAAATGAAT--T-GTAATT-AAAT-AC----------------------TGAAACAT-CGGCTTCACTA-----CTAACAGGC-AT-CAAATAGAGCAGCA---T--CAC-AACATAAT-TCAG--TACAACTGG-A-CAAAAAGGAGAGGAGCAGA----C---ATTGAATAAA
gi|15 : AAAG-ATGA--AGCCAACACACAAGG-CGGAAAAT-TATTTTAAAC-A-TCAAAACAA-AGT---AAAT-AAAAC-ACAGAACTGTGTCCCCAG------AAAATTTAT-A--CTAGGGCCCCAC-A-GACAAG-CCAT-ATATGGGTTTTAT---TTAT----TTTAAAGTTTGTTGGC----A--AAGCACTAAAAGTTA-TGGTAA
gi|17 : aAAAGCATAAGGAGC--A-ACACAAAGTCGGAA--T-TATT--CAACTATTCA---CAACGGTACATAA--A---CAACAGA-CTGT-----CAAT-----A-------TGA--CTACG----CAC-ACGACAAG-CA
gi|16 : aa-ATAA--AGC--A-ACACAAAG-CGGGA--T-TATA--AAACTA-TCA---CAA-GGT---AAAT-------TCAGA-CTGT-----CAGATAT--A-------T-A--CTTGG----CAC-A-GAAAAG-CGCT--------TTG-ATAAATTATTTGGTATCAAGAT-GTTGT-----A--AAGCACTAAAGG-TA-TGGTAAATAAATA-TAGTG--T-GAactataaatggtactaatttta
gi|19 : aaacaAA--AGC--A-ACACAAAG-CGGTA--T-TATT--GAATTA-TCA---CAG-GGT---AAACAA---C-ACAGA-CTGT-----CAG------A-------T-A--
gi|20 : AAGAT-GTTGC-----A--AAACACTGAAAT-TA-CGGTAAGTGATTG---GTG--T-GAAT-AG----------------------tat
gi|7 : tc--AAGCACTAAAAG-TAATGGTAAATGAATGGT-GTA--TTAAATTAC----------------------T--GAAACATG--TAAACTACTA--CCAACAGAGCATTCACA-GGAGCAGAACATTG-CACGAACAT-ACGACATGTTAC-ACT-GGA-CAAAAG-GAGAGGAGCAGATTCACATACCTGAACAACA-CAACT-ACACAACATGACACAGAGTTATACCAG---CTCCTA-ACTGAAC-ATGACTGTATTACA-CCACATGCTTGCCCAATTCCAGTGAGTGCAACGAGGCTCT-TAAAATGC-TAAGGTATACATAATTATGATTCAaatt
gi|21 : aatTAACAGAGCAT-CAAATAGAGCAGC----TGCCAC-AACAT-AT-A
gi|13 : TTTTTACCGTAAG--TGCTGGTCCTGACTCTGGGTACATCTAAAATGTTAC-TATA-TCTTAAACTATATGATGAACTTTAATAAGAGTATCTAAATCCTATAGACAGTTTGGGGAAAGGCCATGGATAATTTTG-AAACACTCAA------TT--GCCATGGTTCTCATTCTTTTG-ATTTTGAGAG-TTGGCAAATTTGCTT-GATGTAAAGG-----CA-AAG-ATAATGATTAGTGATCA
gi|4 : TAAAATCAATGTCTATCCCCAGAGCCTT--ACAGACTCTTC-CACTAATATTTCAGCATTTTTTTCCAATTTTAAAAAACAG-CTCTCTTTTATATGCTTTTTCATACCAA-CAGCA-T-GCTTG--------ATC-------------TTGCTGGGA-TTGGCTTGCATACAATTGT-CCCTGAACGAT--GATT---AAACATTGCTCTCTTCTTGCAATACACGAAATAAGCTTTGTTG-AAATTCTCATGACTAGGAAGGATAGATGTGTATG-------TCATCAGCATAAT-TATAGAG-TGTTC--T-GTTTCTG-AAATAAA---TAT-ATCATTAATAAAAGCATTAAA-----CAAA-GAGGAC-CAAGTCTG-ACCCTTG-TGGAAACCATT-TCTTGATAC-CTGACCAGCTGCTC-AGGATCCCAATTGA-TTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTTGTGAAGAGAG-CCGTCGCTCGAAAGTTTAC-TAAAAGTAATA--TGCATTGTG-GG--C-AGGC-A-ATGCAAAGCTTT--T-CGAAAA-GATCCATT-A-A-A----------------CACG--C---CACATGT--ATTTTGGATTAAC-----CATATT---TCCAAA-TCCTCTAGCAGTC--C-GGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAGCAC-------ATAACAAAATT-------------TGGAAAATAT---CAT-C-AAAATATT-CTTG--ACCAACT-TACAGACATGTACCTTTTCATAGATTTTCGA-AATGGCCGGGTTAAAATAA-ATTATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTC
gi|3 : TTTAAAACGTTGTCCTATTC-----ACACA--AAATAA----TGTTGGatc
gi|6 : agaatataatgtggcaggcaatcaaaagcatttgaaagatccattaaaaccgctgccacatgtaattttttatctaacgcatatttccagtcctctagcagtcggagcaatgtggtctggcatccatgacctttcctaaaagaacatacaaaatcgtggaaaatgttatcaaaatattctgctaactctatacagacatgaccttttcatagattttcgaaatggcaggtaaaatacttactagcctgtaatttttcttccatttttgtataaaggagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattaAC-AG--AA-ATG-A-GT-T-TG-------T--TCAGCATAAT-TATAGAA-TGTTCC-TTGTTTGATGAAATTAAA--TAT-ATTATTAATAAAAGCATTAAA-----CAAAAGAGGAC-----------CCCTAG---------CTC-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC--ATTGATTTTTATCTGATGTGAATGACAAGACAGGT--AGTTTCCCAAAAGTTCTACAGATTTT--GAAGAAAGCCCGTAGGCTGAAAGTTTACATAAAAG-AATA--T-CA---TGTGG--C-AG-------------------C-CG-AAA-GATCCATTAA-A-A-------CA---GCTACATGTAC---CACATGTACATTTTGATCTAAC----GCATATT--G-CC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|18 : ttgctctcgtgttgtaatTTTA-ATAAAAG-TAGA--T-CA---TGAGG--T-ATGC-AGTCAAAT-GC-CT--T-GG-ACA-AATCCATC-A-GTA-------TT---G---C-TG--C---CACATATTTATTGTAATCTAAC----G
gi|8 : tCATAAGCA--ATAATT-TA---TGTAG--T-AAGCTA-TCGAAG-GC-TT--T-TG-AGA-GATCCATT-A-G-AACTGCTGCA---G---TATA--TATATATATGTATATATT-ATC-AACAATGGCTT-TT--TTCC-AA-TCCTCTA-CAATTTTC----AATAATATTGTGTTGCATCCATAACCTTGTTTAAA-AGC---TGCTAAAT---TTAGGT--------------GGAAAATATTTCCA---AAAAAAATTACTT-------ACTGTTTCTATATA-GCTCGCTCAAAAGTCTTCGA-AATTGCT-GGT---AATATGTTTACTGGTCTATAGTtttttttttcca
gi|3 : ttG-AATA--T-AA---TGTGG--C-AGGC-AATCAAAA-GC-AT--T-TG-AAA-GATCCATT-A-A-AA------CC---G---C-TG--C---CACATGTAATTTTTTATCTAAC----GCATATT---TCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTAAA-AGAACATACAAAAT--C----GT--------------GGAAAATGT---TAT-C-AAAATATT-C-TGCTA-ACTCTATACAGACATG-ACCTTTTCATAGATTTTCGA-AATGGCA-GGT-AAAATA--CTTACTAGCCTGTAATTTTTCTTCCATTTTTGTATAAAGG
gi|5 : aA--T-TG---TG-GG--C-AGGC-A-ATGCAAAGC-TT--TTCG-AAAAGATCCATT-A-A-A-------CA---------CG--C---CACATGTA--TTTTGGATTAAC-----CATATT---TCC-AAATCCTCTAGCAGT---CCGGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAGCAC-------ATAACAAAATT-------------TGGAAAATAT---CAT-C-AAAATATT-CTTG--ACCAACT-TACAGACATGTACCTTTTCATAGATTTTCGA-AATGGCCGGGTTAAAATAA-ATTATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattatttaaaacgttgtcctattcacacaaaataatgttggtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|9 : aaagtaatatgc--T-CA---TG-GGGAC-AGGC-AGTCATA---C-TCCGT-TG-ACA-GATCCATA-AGA-A-------TA---G---CA-G--C---CACACTTTTATGCTGATCGAA-------ATCTTTCTTCT-AG-TCTTTCACAAAA---C-GG-AGAAGAGTAGTTTAGCAACCA-AACCTTTTATGAA-AGTAGCTAATAGATatcctttttgtatgaaggataacttgggcttgcttaagtctatctgtaaaaaaccctgtactggtagattgattaccgagttcacatatatgcaaagttgataacaggggagcctgctttgagtattttaactggatgtttcgactcctgtggcctttctcagaactaatttgtttgacaatttattgatagtaccaacatctacaatgtttagaactcaacagttgctttctggtatgttacattctgatgaaaggcatgccagaatacgttgttgtatgttcatcaaatgtcacatcttgcctatgtcattagcaacatttacgtaaattcaattaatagtatcacagtagatttccttgctgttattagaactttgcctcttcacagcaacacattaatgtt
gi|10 : tgcaagcaaatgt---TG-GG--CCACGC-A-GCCGAACGC-CT--T-GA-AAA-GATCCAC----A-A-------CAATTG---CA-A--C---CACGCTTTTATGCTGATCTACA----GCTTCCC---TTC-AC-TCTTTCACGAGA---C-GG-ACAAAAGTGGTTTGGTAACCGCAACCGTTCCTGAA-AGC-CGC------TA--AAAGGAGACTATTAACA----AAAAATA-----ATG-----AT-CT-CT-------AATGGT-CGTGGATG-ATCCTTTTATATCATTTCGA-AATTGT--GGCCAATAT-C-CTAACAGGACGATAATTTTctaaagacattttcaaagaattttgtatgttgaattaatcgagcatagatctttcatacaattcagaaatggttggcaaaatacaaacagggcgataattttg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGCTGATAAATATGGGTGGAAAATATTTTTTAAATCTGCTAATTGTTTATATATAGTTCTCTCAAAATTCTTTGAAATTGCTTGTAATATGCTTATTGGTCTATAGTTCTCTACTTCTGATTGGCTGTTTTTCTTATGGATGGATATAACTTGTGCCTCCTTAAGTATTTCTGGGA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 3333333 11111 333333333 1111 1 11 33333333333333333333 222222 222 9999999999999999999999999999999999999999 444444 111 11111 2222222 2 11 11 5555555 1 11 33 1 1 33333333333 1 777777777777777 1 2 22 111 2 1 33 44 77777777777 11 1111 1 2 2 2 2 1 2 2 2 22222 11 2 2 1 2 4444 1 00000000000000000000000000000 33 22 22 11 1 1 11 1 444444444444 1 1 1111 222 1 22222 1 444444 11 222222 1 1 33 1 11 1 1 555555555555555 1 22222222222 11 1 2222222222222222222 11111 11 1 88888888888888888888888888888 111 11111 33333333 1 111 11 222222 1
lowQualScore : 5 66 66 5 5 2 66 5 66 5 888 5 5 1111111 5 5 22222 222222222 5 2222 1 5 5 11 0 33333333333333333333 77 5 111111 66 5 5 333 77 0 3333333333333333333333333333333333333333 0 333333 6 99 111 6 6 6 77777 8 3 11 0 8888888 2 3 44 55 7 1 0000000 7 3 44 00 2 1 1 4 7 55555555555 1 3 888 888888888888888 1 3 5 0 77 2 0 999 1 0 1 3 3 1 0 00 1 0 0 22 88888888888 44 1 9999 7 1 1 3 0 0 7 7 7 1 3 1 0 0 0 2 0 3 3 3 5 0 0 3 2 2 4 0 88888 88 2 0 4 0 4 3 11 11 7 3 6 7 3 1 1 4444 0 0 7 7 6 7 2 7 7 00000000000000000000000000000 88 7 6 11 1 7 777 2 0 1 77 66 8 55 0 0 22 0 3 888888888888 6 0 0 3333 3 2 3 777 0 55555 3 0 3 333333 33 222222 1 0 2 0 33 6 0 7 33 5 0 333333333333333 55 66 99 8 55 8 3 2 33333333333 0 22 8 2 4 4 7777777777777777777 55 777 33 11111 4 00 1 777 8 8 0 1 88888 77777777777777777777777777777 1 5 555 2 44444 5 11111111 77 999 6 5 5 5 5 000 66 99 88888 0 5 888888 0
lowQualScore : . .. .. . . . .. . .. . ... . . ....... . . ..... ......... . .... . . . .. . .................... .. . ...... .. . . ... .. . ........................................ . ...... . .. ... . . . ..... . . .. . ....... . . .. .. . . ....... . . .. .. . . . . . ........... . . ... ............... . . . . .. . . ... . . . . . . . .. . . . .. ........... .. . .... . . . . . . . . . . . . . . . . . . . . . . . . . . . . ..... .. . . . . . . .. .. . . . . . . . .... . . . . . . . . . ............................. .. . . .. . . ... . . . .. .. . .. . . .. . . ............ . . . .... . . . ... . ..... . . . ...... .. ...... . . . . .. . . . .. . . ............... .. .. .. . .. . . . ........... . .. . . . . ................... .. ... .. ..... . .. . ... . . . . ..... ............................. . . ... . ..... . ........ .. ... . . . . . ... .. .. ..... . . ...... .
lowQualScore : 7 99 99 0 0 2 99 0 99 0 888 0 9 6666666 0 0 55555 888888888 0 1111 4 7 7 66 3 22222222222222222222 99 7 000000 99 0 0 444 99 4 0000000000000000000000000000000000000000 8 444444 7 22 777 7 7 7 44444 0 2 88 2 5555555 0 7 00 00 3 0 3333333 3 3 00 77 3 0 0 0 3 33333333333 0 3 333 777777777777777 0 0 5 0 55 5 7 000 0 7 0 7 3 0 7 77 0 7 7 33 77777777777 77 0 0000 3 0 0 3 7 7 3 3 3 0 7 0 7 0 0 5 0 0 0 0 5 0 0 0 5 5 0 0 55555 55 5 0 0 0 0 0 33 77 3 3 7 3 3 0 0 3333 7 7 3 3 7 3 0 3 3 00000000000000000000000000000 33 3 7 77 0 3 666 0 8 4 00 44 0 00 0 5 55 0 2 222222222222 5 0 0 5555 2 5 2 555 0 00000 2 0 2 555555 22 555555 2 0 0 0 88 5 0 0 88 5 0 888888888888888 77 99 99 0 55 0 3 0 88888888888 5 88 0 0 0 0 1111111111111111111 55 000 77 00000 4 66 1 888 9 9 1 4 33333 77777777777777777777777777777 7 7 777 1 33333 7 33333333 99 000 3 7 4 7 7 000 00 77 11111 3 0 888888 0
consensus : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT--AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG-TGTA-T-A-ATTAT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC-----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG---CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAG-TGCAACGAGGCTCT-TAAAATGCGTAA------CATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTACT-ATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAATTTT--AAACACTCAA-TA---T----GCCATGGTTCTCATTCTTTTGAATTTTCAGAGTT-GGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGGT-AGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTTA-CAGACTCTTCACA-TAATATTTCAGCATTTT----CGATTTTAAAAAACAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGCA-T-GCTTG-----TGTATCG--------GAATTTGCTGGGATC--GCCTGCATACAATTGTCCC-TGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACAG-AAATAAGTTT-GTTGGAAATTCTCATGAC-AGAAAG-ATA-ATGTGT-T--------GTCATCAGCATAAT-TATAGAG-TGTTCC-T-GTTTGATGAAATAAAATAT---ATCATTAATAAAAGCATTAAA-C-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAA--CCC-TTTCTTGATAC-CTGACCAGCTGCT-CA-GGACTCCA-TTGATTTTTACCTGCTGTGAACGACAGGACAGGT--AATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAG-CC-GTAGGC-CGAAAGTTTACATAA--AAG-AATAT-CA--T-GTGG-CAGGC-A-TC-GAAA-GCTTT-CGAAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCCAA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----T-CT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
Reference ( family-925 ) : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTNAAT--A---C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATGTTGTA-T-A-ATTAT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACGTACGGCTAAACTAC-G---CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAGAGGAGCAGA----CA-AACTGAACGAAATCAACC-ACACAACATGACACAGNNTTATANCAGACACTCCTAAACTGAAC-ATGACTGTATTACATCCACATGCNTNCCNAATTCCAGTGAN-TGCAACGAGGNTCT-TAAAATGCGNANGGTATACATANTTATNATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCGTAAG--CGCTGGTCCTGACTNTGGGNACATCTAAAATGTTACTTATA-TCTNAAACTATATGATGAACTCTAATAAGAGTANCTAAATCCGACAGACAGTTTGGGGAAAGGCCATGGATAATTTTNTAAACACTCAA-TAGCCTNTTAGCCATGGTTCTCATTCTTTTGAATTTTNAGAGTTNGNNAAATTNGNTT-GATGTAGAGGATCTTCATAAGAACANTGGTTAGTNATCATAA-ATAAATCTTAGCGTTCGTTCTTAGA-TATGCTGCATCTTAG-ATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--CA-CCAATTCTTTTCA-GAACATTAAAAT-GTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACCCCCAGAGNCTTTA-CAGACTCTTCACACTAANANTTCAGCATTTTTTTCCGATTCTAAAAAACAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGCAGT-GCTTG-----TGTATCG--------AAATTTGCTGGGATTCGGCCTGCATACAATTGTCCCCTGAACNATTTGATTTTAAAACGTTGCTCTCTTCTTGCAATACA--AAATAAGCTT-GTTGGAAATTCTCATGAC-AGGAAG-ATA-ATGT-T-T--------GTCATCAGCATAAT-TATAGAG-TGTTCC-T-GTTTGATGAAATAAAATAT---ATTATTAATAAAAGCATTAAA-C-----AAAAGAGGAC-CAAGT-T-GG-CCCTTG-TGGAA--CCC-TTTCTTGATAC-CCGACCAGCTGCT-C--GGACTCCA-TTGATTTTTACCTGCTGTGAACGACAAGACAGGT--AATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAG-CC-GT--GC-CGAAAGTTTACATAA--AAG-AATAT-CA--T-GTGG-CAGGC-A-TC-GNAA-GCTTT-CGAAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCCAG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAATAT-----T-CT---TGACCAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|1 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTTAAT--A---C-ACAGA-CTGT-----CAGA----T-------ACTAGG----CACA-GACAAG-C-ACTG-ATATGCTGTA-T-ATATTATGTT--TA--AAGAT-GTTGA-----A--AAACACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TAAA--TAG----------------------T--AACATATGGCTAAACT-------CTAACAGAG-AT-CAAATAGAGCAG--TAT-G-CAC-AACAT-AT-ACA-GTTTAC-ACTG-ACAAAAACGAAAGGAACAAA----CA-AACTGAACAAAA-CAACTTACACAACATGACACAGAGT-ATACCAG-----TTTAGACTGAACGATG-CTGTA--ACACCCACATGCCTTCCCA-TTCCAG-GAG-GACA-TGAGGCTCTATAAAATGTGTAA---------AATT-TGATTCAGATCTAAAATGTTCTGGAAGCTCATTCCATAAAAC-GCAGAATGCATAATCTTAAAAGACTTTTTACCATAAGAGTGCTGGTCCTGACTCGAGGTACATCTAAAATGTTACTTATAGTCTAAAACTATAAGGTGAATTCT--TAAGAGTAACTAAATCTGACAGACAGTTTGGGGAAAGGTCAAGGATAATTTA--AAACACTCAAATA---------CCATGGTTCTCATTCTTTTGAATTTCCAGAGTTTGGCAA-TTTGCTCAGATGTAAAAGATCTTCATAAGAACAATGGT-AGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTCCATCTTAGGACGTACTACCTTGACTCACAAAAATGCCATGCCAT-GGACAAAAATATAAAAGTGGGAGAGAATAAAATATGAAAGATAGTAAATCTGCTTGTGTTTAGATAGAAATAAGCAACCA--TCTTTTAAAGAACATTATAGTTGTTGAGCAGCCTTTCTGCAAATGTTAGTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAAACTTTAACAGA-TCTTCACA-TAATATTTCAGCATTTT----CAATTTTAAAAA-CAGGCTCTCTTTTATA-GTTGGTCCATACCAAACAGCAATAGCTTGGGAGCTGTATCGCCTCATTAGAATTTGCTGGGATC--GCCTGC-TACAATGGTCC--TGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA--AAATAA--TT-GTTGGAAATTCTCATGAC-AG-AGG-ATA-ATGTAT-T--------GTCATCAGCATAATATATAGAGGTGTTCC-T-GTTTGAT-AAATAAAATATT--ATCATTAATAAAAGCATTAAAAC-----AAAAGAGGACTCAAGTAT-GGACCCTTGATGGAA--CCCCTTTCTTGATATGCTGACCAGCTGCT-CAAGGA-TCCA-TTGAGTTTTACCTGCTGTAGACGACAGGACAGGTTTAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAA-CCCGTAGGC-TGAAAGTTTACATAA--ACG-GATAT-CA--T-G-GG-CAGGC-A-TCAAAAA-GCTTT-CGAAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTAAATTTTGATCTAAC----GCATATTGTCCAA-TCATCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-CATAAAAAATAACAAAG--GTGAAACAAGGGAAAAATATCATGCA--AAAATAT-----T-CT---TGA-AAA--CTGTACAGAC-ATG-ACCTT-TTCATAGATTTTCGACAA---TGGC--GGTGAAAATACCTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|10 : AA--AAG-----T-CAATT-GGGC-CACGC-AGCC-GAAC-GCCTT-GAAAA-GATCCAC----A-A-------CAATTG---CA-A--C---CACGCTTTTATGCTGATCTACA----GCTTCCC-TTCAC-TCTTTCACGAGA---C-GG-ACAAAAGTGGTTTGGTAACCGCAACCGTTCCTGAA-AGCC-G-C-T--AAAA---------------------GGAGACTATTAA-C---AAAAAATAATGAT-CT------CTAA--TGGT-CGTGG-ATG-ATCCT-TTTATATCATTTCGA-AATTGTGGCC-------AATATCCTAACAGGACGATAATTTT
gi|11 : ggaagcAAGG-ATAA--AGC--A--CACAAAG-CG-AA--TGTATT--AAACTA-TCA---CAA-GGTAAA-------C-ACAGA-CT-T-----CAGA----TA--TAT-ACTAGG----CACAAGACAAGAC-ACTA-ATATGGT-TA-T-A-ATT----T--TA--AAGAT-GTTAA-----ATGAAGCACTAAAAG-TA-TGGTAAATGAAT--T-GTAATTAAA--TAC----------------------TGAAACAT-CGGCTTCACTAC------TAACAG-GCAT-CAAATAGAGCAG--CAT---CAC-AACATAAT-TCA-G-T-ACAACTGGACAAAAAGGAGAGGAGCAGA----C---ATTGAATAAAg
gi|12 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGT-AAT--AA--C-ACAGA-CTGT-----CAGA----TCTATAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--GTA-T-A-ATT----T--TA--AAGAT-GTTGGCTTGCA--AAGCACTAAAAG-TA-TGGTAAATGAATG---GTG--TAAA--------------------------------------G-TAAACTAC------TAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-AATGGACAAAAAAGAAAGGAACA
gi|13 : aTTTTACCGTAAG--TGCTGGTCCTGACTCTGGGTACATCTAAAATGTTACT-ATA-TCTTAAACTATATGATGAACTTTAATAAGAGTATCTAAATCCTATAGACAGTTTGGGGAAAGGCCATGGATAATTTTG-AAACACTCAA-T----T----GCCATGGTTCTCATTCTTTTG-ATTTTGAGAGTT-GGCAAATTTGCTT-GATGTAAAGG-----CA-AAG-ATAATGATTAGTGATCA
gi|15 : tAAAG-ATGA--AGCCAACACACAAGG-CGGAAAAT-TATTTTAAAC-A-TCAAAACAA-AGTAAAT--AAAAC-ACAGAACTGTGTCCCCAGAAAATT---TAT-ACTAGGGCCCCACA-GACAAG-C-CATATATGGGTTTTA-T----TTAT-TT--TA--AAGTTTGTTGGC----A--AAGCACTAAAAGTTA-TGGTAA
gi|16 : a-ATAA--AGC--A-ACACAAAG-CGGGA--T-TATA--AAACTA-TCA---CAA-GGTAAAT--------TCAGA-CTGT-----CAGA----TA--TAT-ACTTGG----CACA-GAAAAG-C-GCT-------TTG-A-TAA-ATTAT-TTGGTATCAAGAT-GTTGT-----A--AAGCACTAAAGG-TA-TGGTAAATAAATA-TAGTG--TGA
gi|17 : aaacaAAAGCATAAGGAGC--A-ACACAAAGTCGGAA--T-TATT--CAACTATTCA---CAACGGTACATAAA---CAACAGA-CTGT-----CAA---------TATGACTACG----CACACGACAAG-CAACTATAAATG--GTACT-A-ATT
gi|18 : aaTTTA-ATAA--AAG-TAGAT-CA--T-GAGG-TATGC-AGTC-AAAT-GCCTT-GGACA-AATCCATC-A-GTA-------TT---G---C-TG--C---CACATATTTATTGTAATCTAAC----Gtta
gi|19 : tAA--AGC--A-ACACAAAG-CGGTA--T-TATT--GAATTA-TCA---CAG-GGTAAACA-A---C-ACAGA-CTGT-----CAGA--------TAT-Atttttttttcca
gi|2 : AACG-ATAA--AGC--A-ACACAAAA-CGG------TATT--AAACTA-CCA---TAT-GGTAAAC--AA--C-ACAGA-CTGT-----CAGA----T----AT-ACTTGG----CACA-GACAAG-C-ACTA-ACATG--GTA-T-C-A--------------AGAT-GTTGC-----A--AAACACTAAAAG-TA-TAGTAAGTGATTG---GTG--TGAA--TAGAATTAGTCTAGAGCAACACTATC--AACGTATGG-TAAACTAT-GGCATTAATGCAGCAT-TAACTAGAGCAA--CAT-G-CAC-AGCAT-AT-ACA---------CTGAACAAAAACAAAAGGGACGTA----TA-AACTGAACGAAATCAACC-ACACAACATGACACAGT-TTATAATAAACACT--TAAATTGAAT-AT-ACTGTA---CATTTATATGCGTTCC-AATTCCAA-GATAT---ATGAAGATCT-TAAAATGTGAA-------CAT--TT-TTATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCATAAG--CGCTGGTCCTGACTATAGGGACATCTAAAATGTTACT-ATA-TTTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCTGACAAACAGTTTGGGGAAAGGTCATGGATAATTTT-TAAACACTCAA-TAGCCTATTAGCCATGGTTCTCATTCTTTTGA-TTTTCAGAGTTGGT-AAATTAGATT-GATGTAGAAGATCTTCATAAGAACATTGGT-AGTCATTATAA-ATAAATCTTAGCGTTCGTTCTTAGA-TATGCTGCATCTTAG-ATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--CA-CCAATTCTTTTCA-GAACATTAAAAT-GTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACTCCCAGAAGCTTTA-CAGACTCTTCACA--AAAAATTCAGCATTTT----CGATTCT--AAAACAGGTTCTCTTTTATATG--TTTTCATACC-AACAGCA-------G-----TGTATTG--------AAATTTGTTGGGATTC-GCCTGCATACAATTGT-CCCTGAACCATTTGA--TTAAAATATTGCTCTCTTTTTGTAATACAG-AAATAAGTTT-GTT-GAAATTCTCATGGC-AGAAAG-AAA-ATGT-T-TTGAGCATAATTATCAGCATAAT-TATAGAG-TGTTCCTT-GTTTGATGAAATAAAATGTATCATTATTAATAAAAGCATTAAA-CAAATTAAAAGAGGAC-CAAGTATGGG-CCTTTG-TGGAACCCCC-TATCTTGATAC-CCGACCACTTGCTCC--GAACTCCA-GTGATTTTCACTGACTGTGAACGACAAGACAGGT--GATTTCCCAAAAGTTCTACCGA-TTT-TGAAAA---------------------------AA--AAG-AATAT-GA--T-GTGG-CCTGCAA-TC-AAAA-GCTTT--GAAA-GATCCATTAA-A-A-------CA---G---C-TG--C---CACATGTAAATTTTGATCTAAC----GCATATT-TCCAA-TCCTGTGGCAGA---C-GG-AGCAATGTGt
gi|20 : a--AAGAT-GTTGC-----A--AAACACTGAAAT-TA-CGGTAAGTGATTG---GTG--TGAA--TAG----------------------
gi|21 : tcTAACAGAGCAT-CAAATAGAGCAG--C-T-GCCAC-AACAT-AT-Aaatt
gi|3 : AG-AATAT-AA--T-GTGG-CAGGC-AATC-AAAA-GCATT-TGAAA-GATCCATTAA-A-A-------CC---G---C-TG--C---CACATGTAATTTTTTATCTAAC----GCATATT-TCCAG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTAAA-AG-A-A-C-------AT-ACAAAATCG---------TGGAAAATGTTAT-C---AAAATAT-----T-CT-----GCTAACTCTATACAGAC-ATG-ACCTT-TTCATAGATTTTCGA-AA---TGGCAGG--TAAAATA-CTT-ACTAGCCTGTAATTTTTCTTCCATTTTTGTATAAAGG
gi|3 : TTTAAAACGTTGTCCTATTC-----ACACA--AAATAA---T-GTTGGagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattatttaaaacgttgtcctattcacacaaaataatgttggtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|4 : agaatataatgtggcaggcaatcaaaagcatttgaaagatccattaaaaccgctgccacatgtaattttttatctaacgcatatttccagtcctctagcagtcggagcaatgtggtctggcatccatgacctttcctaaaagaacatacaaaatcgtggaaaatgttatcaaaatattctgctaactctatacagacatgaccttttcatagattttcgaaatggcaggtaaaatacttactagcctgtaatttttcttccatttttgtataaaggagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattaTAAAATCAATGTCTATCCCCAGAGCCTT-A-CAGACTCTTC-CACTAATATTTCAGCATTTTTTTCCAATTTTAAAAAACAG-CTCTCTTTTATATGCTTTTTCATACCAA-CAGCA-T-GCTTG--------ATC-------------TTGCTGGGATT-GGCTTGCATACAATTGTCCC-TGAACGAT--GATT---AAACATTGCTCTCTTCTTGCAATACACGAAATAAGCTTTGTTG-AAATTCTCATGACTAGGAAGGATAGATGTGTAT--------GTCATCAGCATAAT-TATAGAG-TGTTC--T-GTTTC-TGAAATAAA-TAT---ATCATTAATAAAAGCATTAAA-C-----AAA-GAGGAC-CAAGTCT-GA-CCCTTG-TGGAA--ACCATTTCTTGATAC-CTGACCAGCTGCT-CA-GGATCCCAATTGATTTT-ACCTGCTGTGAACGACAGGACAGGT--AATTTCCCAAAAGTTCTACCGATTTTGTGAAGAGAG-CC-GTC-GCTCGAAAGTTTAC-TAA--AAGTAATATGCA--TTGTGGGCAGGC-A-AT-GCAAAGCTTTTCGAAAAGATCCATT-A-A-A-------CA---------CG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCCAAATCCTCTAGCAGT---CCGGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----T-CT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|5 : A--AAGTAATATGCA--TTGTGGGCAGGC-A-AT-GCAAAGCTTTTCGAAAAGATCCATT-A-A-A-------CA---------CG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCCAAATCCTCTAGCAGT---CCGGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----T-CT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCatc
gi|6 : TTGCTCTCGTGTTGTAATACAG-AAATGAGTTT-GTTatcctttttgtatgaaggataacttgggcttgcttaagtctatctgtaaaaaaccctgtactggtagattgattaccgagttcacatatatgcaaagttgataacaggggagcctgctttgagtattttaactggatgtttcgactcctgtggcctttctcagaactaatttgtttgacaatttattgatagtaccaacatctacaatgtttagaactcaacagttgctttctggtatgttacattctgatgaaaggcatgccagaatacgttgttgtatgttcatcaaatgtcacatcttgcctatgtcattagcaacatttacgtaaattcaattaatagtatcacagtagatttccttgctgttattagaactttgcctcttcacagcaacacattaatgtt
gi|6 : AC-AGAAA---TG-A-GT-T-T--------GT--TCAGCATAAT-TATAGAA-TGTTCC-TTGTTTGATGAAATTAAATAT---ATTATTAATAAAAGCATTAAA-C-----AAAAGAGGAC-C-----------CCTAG----------C-TCTCTTGATAC-CTGACCAGCTGCT-CA-GGACTCCA-TTGATTTTTATCTGATGTGAATGACAAGACAGGT--AGTTTCCCAAAAGTTCTACAGA-TTT-TGAAGAAAGCCC-GTAGGC-TGAAAGTTTACATAA--AAG-AATAT-CA--T-GTGG-CAG-----------------C-CGAAA-GATCCATTAA-A-A-------CA---GCTACATGTAC---CACATGTACATTTTGATCTAAC----GCATATT-GCCAG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTcagcataattatagaatgttccttgtttgatgaaattaaatatattattaataaaagcattaaacaaaagaggacccctagctctcttgatacctgaccagctgctcaggactccattgatttttatctgatgtgaatgacaagacaggtagtttcccaaaagttctacagattttgaagaaagcccgtaggctgaaagtttacataaaagaatatcatgtggcagccgaaagatccattaaaacagctacatgtaccacatgtacattttgatctaacgcatattgccagtcctctagcagtcggagcaatgtggt
gi|7 : ttgctctcgtgttgtaat--AAGCACTAAAAG-TAATGGTAAATGAATGGT-GTA--TTAAATTAC----------------------T--GAAACATG--TAAACTACTA---CCAACAGAGCATTCACA-GGAGCAGAACATTG-CACGAACAT-ACGACATGTT-AC-ACTGGACAAAA-GGAGAGGAGCAGATTCACATACCTGAACAACA-CAACT-ACACAACATGACACAGAGTTATACCAG---CTCCTAA-CTGAAC-ATGACTGTATTACA-CCACATGCTTGCCCAATTCCAGTGAG-TGCAACGAGGCTCT-TAAAATGC-TAAGGTATACATAATTATGATTCA
gi|8 : aatCATAAGCAAT-AAT-T-TA--T-GTAG-TAAGCTA-TC-GAAG-GCTTT-TGAGA-GATCCATT-A-G-AACTGCTGCA---G---TATA--TATATATATGTATATATT-ATC-AACAATGGCTTTTT-TCCAA-TCCTCTA-CAATTTTC----AATAATATTGTGTTGCATCCATAACCTTGTTTAAA-AG-CTG-C-T--AAATTTA----G--GT---------GGAAAATATT-T-CCAAAAAAAAT-----TACT---T-----A--CTGTTT---CTATATAGCTCGCTCAAAAGTCTTCGA-AA---TTGCTGG--TAATAT-GTTT-ACTGGTCTATAGT
gi|9 : ttT-CA--T-GGGGACAGGC-AGTC-ATAC-TCCGT-TGACA-GATCCATA-AGA-A-------TA---G---CA-G--C---CACACTTTTATGCTGATCGAAA----TCTTTCT-TCTAG-TCTTTCACAAAA---C-GG-AGAAGAGTAGTTTAGCAACCA-AACCTTTTATGAA-AG-T-AGC-T--AA--TA-----G--AT--------CTAAAGACATTTT-C---AAAGAAT-----T-TTGTATGTTGAA--TTAATCGAGC-ATAGATCTT-T-CATACAATTCAGA-AA---TGGTTGG--CAAAATACA-A-ACAGGGCGATAATTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCTGATAAATATGGGTGGAAAATATTTTTTAAATCTGCTAATTGTTTATATATAGTTCTCTCAAAATTCTTTGAAATTGCTTGTAATATGCTTATTGGTCTATAGTTCTCTACTTCTGATTGGCTGTTTTTCTTATGGATGGATATAACTTGTGCCTCCTTAAGTATTTCTGGGA
Alignments
lowQualScore : 11111 333333333 1111 33333333333333333333 222222 222 8888888888888888888888888888888888888888 4444444 111 11111 2222222 1 1 11111 1 11 222 1 1 22 1 33333333333333 1 1 1 11 111 1 1 11 1 1 5555555555 2 1 11 1 1 1 1 1 1 1 1 2222 11 11 1 22 1 11 2222 2 1 888888888888888888888888888888 1 1 111 11 11 11 11 1 111 3333333 1 1 1111 1 111 1 222222 1 1111 333333333 1 1 11 1 1 2222 22222222 1 2222222222222222222 11111 111 1 88888888888888888888888888888 111 11111 11111111 1 111 11 222222 1
lowQualScore : 5 66 66 5 5 2 66 5 66 5 888 5 00 99999 5 5 22222 222222222 5 2222 5 5 5 5 77 5 66666666666666666666 77 5 111111 66 5 5 333 77 0 1111111111111111111111111111111111111111 0000000 6 99 111 6 6 6 77777 8 3 11 0 8888888 3 3 7 7 88888 7 3 44 555 2 1 6 7 3 6 0 44 3 33333333333333 3 1 5 5 88 1 0 999 3 3 88 0 3 3 7777777777 3 3 7 44 7 7 7 3 5 5 1 5 1 1 1 5 5 5 1 1 1 1 5 3333 88 66 1 5 1 1 1 00 6 3 44 8888 0 3 6 7 2 7 7 333333333333333333333333333333 3 3 7 6 7 333 0 22 22 33 33 3 2 0 3 333 2222222 6 0 0 3333 3 2 3 0 777 0 888888 0 3 3 6666 333333333 1 0 0 0 9 33 5 0 3333 3 777 55 66 99 8 99 4 77 8 55555555 2 44 88 4 4 2 4 4 7777777777777777777 55 777 33 11111 4 4 4 1 222 4 8 0 1 88888 77777777777777777777777777777 1 5 555 1 44444 99999999 77 999 6 5 5 0 5 5 000 66 99 88888 0 5 888888 0
lowQualScore : . .. .. . . . .. . .. . ... . .. ..... . . ..... ......... . .... . . . . .. . .................... .. . ...... .. . . ... .. . ........................................ ....... . .. ... . . . ..... . . .. . ....... . . . . ..... . . .. ... . . . . . . . .. . .............. . . . . .. . . ... . . .. . . . .......... . . . .. . . . . . . . . . . . . . . . . . . . .... .. .. . . . . . .. . . .. .... . . . . . . . .............................. . . . . . ... . .. .. .. .. . . . . ... ....... . . . .... . . . . ... . ...... . . . .... ......... . . . . . .. . . .... . ... .. .. .. . .. . .. . ........ . .. .. . . . . . ................... .. ... .. ..... . . . . ... . . . . ..... ............................. . . ... . ..... ........ .. ... . . . . . . ... .. .. ..... . . ...... .
lowQualScore : 7 99 99 0 0 2 99 0 99 0 888 0 22 11111 0 0 55555 888888888 0 1111 7 7 7 7 99 7 77777777777777777777 99 7 000000 99 0 0 444 99 4 4444444444444444444444444444444444444444 2222222 7 22 777 7 7 7 44444 0 2 88 2 5555555 3 3 3 3 77777 3 3 00 777 0 0 7 3 3 7 7 33 3 77777777777777 3 0 5 5 55 0 7 000 3 3 33 7 3 3 3333333333 7 3 3 00 3 3 3 3 0 5 0 0 0 0 0 5 5 0 0 0 0 0 0 5555 55 55 0 5 0 0 0 77 7 3 77 3333 7 7 7 3 0 3 3 777777777777777777777777777777 3 3 3 7 3 777 2 55 55 33 88 2 5 0 2 888 5555555 5 0 0 5555 2 5 2 0 555 0 222222 0 2 0 5555 555555555 2 0 2 0 2 88 5 0 8888 0 000 77 99 99 0 55 0 33 0 77777777 3 55 88 0 0 0 0 0 1111111111111111111 55 000 77 00000 4 4 4 1 222 4 9 1 4 33333 77777777777777777777777777777 7 7 777 0 33333 99999999 99 000 3 7 4 1 7 7 000 00 77 11111 3 0 888888 0
consensus : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CAC-A-GACAAG-C-AC--TA-ATATG--GTA-TA-ATT-AT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTACA-CGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTACT-ATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTT-AAAAACAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGG-AAC-CCCTTTCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----TCT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
Reference ( family-925 ) : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CAC-A-GACAAG-C-AC--TA-ATATG-TGTA-TA-ATT-AT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTGCAACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTACT-ATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTGAATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAAACAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAAGATA-ATGTGT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGG-AA--CCCTTTCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAG-CCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----TCT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|1 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTTAAT-A---C-ACAGA-CTGT-----CAGA----T-------ACTAGG----CAC-A-GACAAG-C-AC--TG-ATATGCTGTA-TATATT-ATGTT--TA--AAGAT-GTTGA-----A--AAACACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TAAA--TAG----------------------T--AACATATGGCTAAACT------CTAACAGAG-AT-CAAATAGAGCAG--TAT-G-CAC-AACAT-AT-ACA-GTTTAC-ACTG-ACAAAAACGAAAGGAACAAA----CA-AACTGAACAAAA-CAACTTACACAACATGACACAGAGT-ATACCAG-TT--TAGACTGAACGATG-CTGTA--ACACCCACATGCCTTCCCA-TTCCAG-GAGGACA-TGAGGCTCTATAAAATGT----GTA-A---AATT-TGATTCAGATCTAAAATGTTCTGGAAGCTCATTCCATAAAAC-GCAGAATGCATAATCTTAAAAGACTTTTTACCATAAGAGTGCTGGTCCTGACTCGAGGTACATCTAAAATGTTACTTATAGTCTAAAACTATAAGGTGAATTCT--TAAGAGTAACTAAATCTGACAGACAGTTTGGGGAAAGGTCAAGGATAA-TTTA-AAACACTCAA-A---T----ACCATGGTTCTCATTCTTTTGAATTTCCAGAGTTTGGC-AATTTGCTCAGATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTCCATCTTAGGACGTACTACCTTGACTCACAAAAATGCCATGCCAT-GGACAAAAATATAAAAGTGGGAGAGAATAAAATATGAAAGATAGTAAATCTGCTTGTGTTTAGATAGAAATAAGCAACCA--TCTTTTAAAGAACATTATAGTTGTTGAGCAGCCTTTCTGCAAATGTTAGTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAAACTTTAACAGA-TCTTC-ACATAATATTTCAGCATTTT----CAATTTT-AAAAACAGGCTCTCTTTTATA-GTTGGTCCATACCAAACAGCAATAGCTTGGGAGCTGTATCGCCTCATTAGAATTTGCTGGGA-TCG-CCTGC-TACAATGGT-CCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA--AAATAA---TTGTTGGAAATTCTCATGAC--AG-AGGATA-ATGTAT-TG-------TCATCAGCATAATATATAGAGGTGTTCC-T-GTTTGAT-AAATAAAATATTATC---ATTAATAAAAGCATTAAAAC-----AAAAGAGGACTCAAGTAT-GGACCCTTGATGG-AAC-CCCTTTCTTGATATGCTGACCAGCTGCTCAAGGATCC-ATTGAGTTTTACCTGCTGTAGACGACAGGACAGGTTTAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAACCCGTAGGCTGAAAGTTTACATAA--ACG-GATAT-CA--T-G--GG-CAGGC-A-TCAA-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTAAATTTTGATCTAAC----GCATATTGTCC-AA-TCATCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-CATAAAAAATAACAAAG--GTGAAACAAGGGAAAAATATCATGCA--AAAATAT-----TCT---TGA-AAA--CTGTACAGAC-ATG-ACCTT-TTCATAGATTTTCGACAA---TGGC--GGTGAAAATACCTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|10 : AA--AAG-----T-CAATT-GG-GC-CACGC-AGCC-G-AACGC-CTT-GA-AAA-GATCCAC----A-A-------CAATTG---CA-A--C---CACGCTTTTATGCTGATCTACA----GCTTCCC-TTC-AC-TCTTTCACGAGA---C-GG-ACAAAAGTGGTTTGGTAACCGCAACCGTTCCTGAA-AGCC-G-C-T--AAAA---------------------GGAGACTATTAA-C---AAAAAATAATGATCT------CTAA--TGGT-CGTGG-ATG-ATCCT-TTTATATCATTTCGA-AATTGTGGCC-------AATATCCTAACAGGACGATAATTTT
gi|11 : ggaagcAAGG-ATAA--AGC--A--CACAAAG-CG-AA--TGTATT--AAACTA-TCA---CAA-GGTA----AA--C-ACAGA-CT-T-----CAGA----TA--TAT-ACTAGG----CACAA-GACAAGAC-AC--TA-ATATG-GTTA-TA-----AT-TT--TA--AAGAT-GTTAA-----ATGAAGCACTAAAAG-TA-TGGTAAATGAAT--T-GTAATTAAA--TAC----------------------TGAAACAT-CGGCTTCACTA-----CTAACAG-GCAT-CAAATAGAGCAG--CAT---CAC-AACATAAT-TCA-G-T-ACAACTGGACAAAAAGGAGAGGAGCAGA----C---ATTGAATAAAg
gi|12 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAA-T-AA--C-ACAGA-CTGT-----CAGA----TCTATAT-ACTAGG----CAC-A-GACAAG-C-AC--TA-ATATG--GTA-TA-ATT-----T--TA--AAGAT-GTTGGCTTGCA--AAGCACTAAAAG-TA-TGGTAAATGAATG---GTG--TAAA--------------------------------------G-TAAACTAC-----TAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-AATGGACAAAAAAGAAAGGAACA
gi|13 : aTTTTACCGTAAG--TGCTGGTCCTGACTCTGGGTACATCTAAAATGTTACT-ATA-TCTTAAACTATATGATGAACTTTAATAAGAGTATCTAAATCCTATAGACAGTTTGGGGAAAGGCCATGGATAA-TTTTGAAACACTCAAT----T----GCCATGGTTCTCATTCTTTTG-ATTTTGAGAG-TTGGCAAATTTGCTT-GATGTAAAGG-----CA-AAG-ATAATGATTAGTGATCA
gi|15 : tAAAG-ATGA--AGCCAACACACAAGG-CGGAAAAT-TATTTTAAAC-A-TCAAAACAA-AGTAAAT-AAAAC-ACAGAACTGTGTCCCCAGAAAATT---TAT-ACTAGGGCCCCAC-A-GACAAG-C-CA--TA--TATG-GGTT-TT-ATTTAT-TT--TA--AAGTTTGTTGGC----A--AAGCACTAAAAGTTA-TGGTAA
gi|16 : a-ATAA--AGC--A-ACACAAAG-CGGGA--T-TATA--AAACTA-TCA---CAA-GGTAAAT-------TCAGA-CTGT-----CAGA----TA--TAT-ACTTGG----CAC-A-GAAAAG-C-GCTTTG-ATA---------A-ATT-AT-TTGGTATCAAGAT-GTTGT-----A--AAGCACTAAAGG-TA-TGGTAAATAAATA-TAGTG--TGA
gi|17 : aaacaAAAGCATAAGGAGC--A-ACACAAAGTCGGAA--T-TATT--CAACTATTCA---CAACGGTACATAAA--CAACAGA-CTGT-----CAA---------TATGACTACG----CAC-ACGACAAG-CAAC--TATAAATG--GTACTA-ATT-
gi|18 : aaTTTA-ATAA--AAG-TAGAT-CA--T-GA-GG-TATGC-AGTC-A-AATGC-CTT-GG-ACA-AATCCATC-A-GTA-------TT---G---C-TG--C---CACATATTTATTGTAATCTAAC----Gtta
gi|19 : tAA--AGC--A-ACACAAAG-CGGTA--T-TATT--GAATTA-TCA---CAG-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA--------TAT-Atttttttttcca
gi|2 : AACG-ATAA--AGC--A-ACACAAAA-CGG------TATT--AAACTA-CCA---TAT-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA----T----AT-ACTTGG----CAC-A-GACAAG-C-AC--TA-ACATG--GTA-TC-A---------------AGAT-GTTGC-----A--AAACACTAAAAG-TA-TAGTAAGTGATTG---GTG--TGAA--TAGAATTAGTCTAGAGCAACACTATC--AACGTATGG-TAAACTATGGCATTAATGCAGCAT-TAACTAGAGCAA--CAT-G-CAC-AGCAT-AT-ACA---------CTGAACAAAAACAAAAGGGACGTA----TA-AACTGAACGAAATCAACC-ACACAACATGACACAG-TTTATAATAAACACTTAAATTGAAT-AT-ACTGTA---CATTTATATGCGTTCC-AATTCCAA-GA-TATA-TGAAGATCT-TAAAATGT----G-A-ACAT--TT-TTATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCATAAG--CGCTGGTCCTGACTATAGGGACATCTAAAATGTTACT-ATA-TTTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCTGACAAACAGTTTGGGGAAAGGTCATGGATAATTTTT-AAACACTCAATAGCCTATTAGCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGTAAATTAGATT-GATGTAGAAGATCTTCATAAGAACATTGG-TAGTCATTATAA-ATAAATCTTAGCGTTCGTTCTTAG-ATATGCTGCATCTTA-GATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--C-ACCAATTCTTTTC-AGAACATTAAAA-TGTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACTCCCAGAAGCTTT-ACAGACTCTTC-ACA-AAAAATTCAGCATTTT----CGATTCT--AAAACAGGTTCTCTTTTATATG--TTTTCATACC-AACAGC-A------G-----TGTATTG--------AAATTTGTTGGGATTCG-CCTGCATACAATTGTCCCTGAACCATTTGA--TTAAAATATTGCTCTCTTTTTGTAATACA-GAAATAAG-TTTGTT-GAAATTCTCATGGC--AGAAAGAAA-ATGTTT-TGAGCATAATTATCAGCATAAT-TATAGA-GTGTTCCTT-GTTTGATGAAATAAAATG-TATCATTATTAATAAAAGCATT-AAACAAATTAAAAGAGGAC-CAAGTATGGG-CCTTTG-TGG-AACCCCCTATCTTGATAC-CCGACCACTTGCTCCGAACTCC-AGTGATTTTCACTGACTGTGAACGACAAGACAGG--TGATTTCCCAAAAGTTCTACCGA-TTT-TGAAAA-------------------------AA--AAG-AATAT-GA--T-GT-GG-CCTGCAA-TC-A-AAAGC-TTT--G-AAA-GATCCATTAA-A-A-------CA---G---C-TG--C---CACATGTAAATTTTGATCTAAC----GCATATT-TCC-AA-TCCTGTGGCAGA---C-GG-AGCAATGTGt
gi|20 : a--AAGAT-GTTGC-----A--AAACACTGAAAT-TA-CGGTAAGTGATTG---GTG--TGAA--TAG----------------------
gi|21 : tcTAACAGAGCAT-CAAATAGAGCAG--C-T-GCCAC-AACAT-AT-Aaatt
gi|3 : AG-AATAT-AA--T-GT-GG-CAGGC-AATC-A-AAAGC-ATT-TG-AAA-GATCCATTAA-A-A-------CC---G---C-TG--C---CACATGTAATTTTTTATCTAAC----GCATATT-TCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTAAA-AG-A-A-C-------AT-ACAAAATCG---------TGGAAAATGTTAT-C---AAAATAT-----TCT-----GCTAACTCTATACAGAC-ATG-ACCTT-TTCATAGATTTTCGA-AA---TGGCAGG--TAAAATA-CTT-ACTAGCCTGTAATTTTTCTTCCATTTTTGTATAAAGG
gi|4 : TAAAATCAATGTCTATCCCCAGAGCCTT--ACAGACTCTTCCAC-TAATATTTCAGCATTTTTTTCCAATTTTAAAAAACAG-CTCTCTTTTATATGCTTTTTCATACCAA-CAGC-AT-GCTTG--------ATC-------------TTGCTGGGA-TTGGCTTGCATACAATTGTCCCTGAACGAT--GATT---AAACATTGCTCTCTTCTTGCAATACACGAAATAAGCTTTGTTG-AAATTCTCATGACTAGGAAGGATAGATGTGTATG-------TCATCAGCATAAT-TATAGA-GTGTTC--T-GTTTC-TGAAATAAA-TA-TATC---ATTAATAAAAGCATT-AAAC------AAAGAGGAC-CAAGTCT-GA-CCCTTG-TGGAAA--CCATTTCTTGATAC-CTGACCAGCTGCTCAGGATCCCAATTGA-TTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTTGTGAAGAGAG-CCGTCGCTCGAAAGTTTAC-TAA--AAGTAATATGCAT-T-GTGGG-CAGGC-A-AT-GCAAAGCTTTT-CGAAAA-GATCCATT-A-A-A----------------CACG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCCAAA-TCCTCTAGCAGTC--C-GGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----TCT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattatttaaaacgttgtcctattcacacaaaataatgttggtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|5 : A--AAGTAATATGCA--TTGT-GGGCAGGC-A-AT-GCAAAGC-TTTTCG-AAAAGATCCATT-A-A-A-------CA---------CG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCC-AAATCCTCTAGCAGT---CCGGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----TCT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCatc
gi|6 : TTGCTCTCGTGTTGTAATACA-GAAATGAG-TTTGTTatcctttttgtatgaaggataacttgggcttgcttaagtctatctgtaaaaaaccctgtactggtagattgattaccgagttcacatatatgcaaagttgataacaggggagcctgctttgagtattttaactggatgtttcgactcctgtggcctttctcagaactaatttgtttgacaatttattgatagtaccaacatctacaatgtttagaactcaacagttgctttctggtatgttacattctgatgaaaggcatgccagaatacgttgttgtatgttcatcaaatgtcacatcttgcctatgtcattagcaacatttacgtaaattcaattaatagtatcacagtagatttccttgctgttattagaactttgcctcttcacagcaacacattaatgtt
gi|6 : AC--AGAAA--TG-A-GT-T-TG-------T--TCAGCATAAT-TATAGA-ATGTTCC-TTGTTTGATGAAATTAAATA-TATT---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-C-----------CCTAG-----------CTCTCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTATCTGATGTGAATGACAAGACAGG--TAGTTTCCCAAAAGTTCTACAGA-TTT-TGAAGAAAGCCCGTAGGCTGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAG------------------C-CG-AAA-GATCCATTAA-A-A-------CA---GCTACATGTAC---CACATGTACATTTTGATCTAAC----GCATATT-GCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTcagcataattatagaatgttccttgtttgatgaaattaaatatattattaataaaagcattaaacaaaagaggacccctagctctcttgatacctgaccagctgctcaggactccattgatttttatctgatgtgaatgacaagacaggtagtttcccaaaagttctacagattttgaagaaagcccgtaggctgaaagtttacataaaagaatatcatgtggcagccgaaagatccattaaaacagctacatgtaccacatgtacattttgatctaacgcatattgccagtcctctagcagtcggagcaatgtggt
gi|7 : ttgctctcgtgttgtaat--AAGCACTAAAAG-TAATGGTAAATGAATGGT-GTA--TTAAATTAC----------------------T--GAAACATG--TAAACTACTA--CCAACAGAGCATTCACA-GGAGCAGAACATTG-CACGAACAT-ACGACATGTT-AC-ACTGGACAAAA-GGAGAGGAGCAGATTCACATACCTGAACAACA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCT-AACTGAAC-ATGACTGTATTACA-CCACATGCTTGCCCAATTCCAGTGAGTGCAACGAGGCTCT-TAAAATGCTAAGGTATACATAATTATGATTCA
gi|8 : aatCATAAGCAAT-AAT-T-TA--T-GT-AG-TAAGCTA-TC-G-AAGGC-TTT-TG-AGA-GATCCATT-A-G-AACTGCTGCA---G---TATA--TATATATATGTATATATT-ATC-AACAATGGCTTTTT-TCC-AA-TCCTCTA-CAATTTTC----AATAATATTGTGTTGCATCCATAACCTTGTTTAAA-AG-CTG-C-T--AAATTTA----G--GT---------GGAAAATATT-T-CCAAAAAAAAT-----T-------ACTTA--CTGTTT---CTATATAGCTCGCTCAAAAGTCTTCGA-AA---TTGCTGG--TAATAT-GTTT-ACTGGTCTATAGT
gi|9 : ttT-CA--T-GG-GGACAGGC-AGTC-A-TACTC-CGT-TG-ACA-GATCCATA-AGA-A-------TA---G---CA-G--C---CACACTTTTATGCTGATCGAAA----TCTTTCT-TCT-AG-TCTTTCACAAAA---C-GG-AGAAGAGTAGTTTAGCAACCA-AACCTTTTATGAA-AG-T-AGC-T----AAT-----AG--AT--------CTAAAGACATTTT-C---AAAGAAT-----TTTGTATGTTGAA--TTAATCGAGC-ATAGATC-T-TTCATACAATTCAGA-AA---TGGTTGG--CAAAATACA-A-ACAGGGCGATAATTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCTGATAAATATGGGTGGAAAATATTTTTTAAATCTGCTAATTGTTTATATATAGTTCTCTCAAAATTCTTTGAAATTGCTTGTAATATGCTTATTGGTCTATAGTTCTCTACTTCTGATTGGCTGTTTTTCTTATGGATGGATATAACTTGTGCCTCCTTAAGTATTTCTGGGA
Alignments
lowQualScore : 111111 11111 333333333 1111 1 2222222 222222 222 8888888888888888888888888888888888888888 44444 111 11111 2222222 1 1 11111 1 11 222 1 1 1 1 33333333333333 1 1 1 11 111 1 1 11 1 1 5555555555 1 1 11 1 1 1 1 1 1 1 1 2222 11 11 1 22 1 11 2222 1 1 888888888888888888888888888888 1 1 111 11 11 11 11 1 111 3333333 1 1 1111 1 111 1 22222 1 1111 11 1 1 1 11 1 1 1111 22222222 1 2222222222222222222 11111 111 1 88888888888888888888888888888 111 11111 11111111 1 111 11 222222 1
lowQualScore : 5 66 66 5 5 2 66 5 66 5 888 5 666666 5 5 22222 222222222 5 2222 1 5 5 777 88888 666 5 8888888 77 5 111111 66 5 5 333 77 0 1111111111111111111111111111111111111111 0 11111 6 99 111 6 6 6 77777 8 3 11 0 8888888 3 3 7 7 88888 7 3 44 555 2 1 6 7 3 6 3 0 3 33333333333333 3 1 5 5 88 1 0 999 3 3 88 0 3 3 7777777777 3 3 7 44 7 7 7 3 5 5 1 5 1 1 1 5 5 5 1 1 1 1 5 3333 88 66 1 5 1 1 1 00 6 3 44 8888 0 7 3 6 7 2 7 7 333333333333333333333333333333 3 3 7 6 7 333 0 22 22 33 33 3 6 0 3 111 2222222 6 0 0 3333 3 2 3 0 777 0 55555 3 0 3 3 6666 33 2 0 0 0 0 9 33 5 0 2222 3 777 55 66 99 8 99 4 77 8 55555555 2 44 88 4 4 2 4 4 7777777777777777777 55 777 33 11111 4 4 4 1 222 4 8 0 1 88888 77777777777777777777777777777 1 5 555 1 44444 99999999 77 999 6 5 5 0 5 5 000 66 99 88888 0 5 888888 0
lowQualScore : . .. .. . . . .. . .. . ... . ...... . . ..... ......... . .... . . . ... ..... ... . ....... .. . ...... .. . . ... .. . ........................................ . ..... . .. ... . . . ..... . . .. . ....... . . . . ..... . . .. ... . . . . . . . . . .............. . . . . .. . . ... . . .. . . . .......... . . . .. . . . . . . . . . . . . . . . . . . . .... .. .. . . . . . .. . . .. .... . . . . . . . . .............................. . . . . . ... . .. .. .. .. . . . . ... ....... . . . .... . . . . ... . ..... . . . . .... .. . . . . . . .. . . .... . ... .. .. .. . .. . .. . ........ . .. .. . . . . . ................... .. ... .. ..... . . . . ... . . . . ..... ............................. . . ... . ..... ........ .. ... . . . . . . ... .. .. ..... . . ...... .
lowQualScore : 7 99 99 0 0 2 99 0 99 0 888 0 000000 0 0 55555 888888888 0 1111 4 7 7 333 00000 111 7 2222222 99 7 000000 99 0 0 444 99 4 4444444444444444444444444444444444444444 8 22222 7 22 777 7 7 7 44444 0 2 88 2 5555555 3 3 3 3 77777 3 3 00 777 0 0 7 3 3 7 3 7 3 77777777777777 3 0 5 5 55 0 7 000 3 3 33 7 3 3 3333333333 3 3 3 00 3 3 3 3 0 5 0 0 0 0 0 5 5 0 0 0 0 0 0 5555 55 55 0 5 0 0 0 77 7 3 77 3333 7 3 3 7 3 0 3 3 777777777777777777777777777777 3 3 3 7 3 777 2 55 55 33 88 2 5 0 2 888 5555555 5 0 0 5555 2 5 2 0 555 0 00000 2 0 2 0 5555 22 5 0 0 2 0 2 88 5 0 5555 0 000 77 99 99 0 55 0 33 0 77777777 3 55 88 0 0 0 0 0 1111111111111111111 55 000 77 00000 4 4 4 1 222 4 9 1 4 33333 77777777777777777777777777777 7 7 777 0 33333 99999999 99 000 3 7 4 1 7 7 000 00 77 11111 3 0 888888 0
consensus : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--G--T-A-TA-ATTAT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----TCT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
Reference ( family-925 ) : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--G--T-A-TA-ATTAT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----TCT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|1 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTTAAT-A---C-ACAGA-CTGT-----CAGA----T-------ACTAGG----CACA-GACAAG-C-ACTG-ATATGCTG--T-A-TATATTATGTT--TA--AAGAT-GTTGA-----A--AAACACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TAAA--TAG----------------------T--AACATATGGCTAAACT------CTAACAGAG-AT-CAAATAGAGCAG--TAT-G-CAC-AACAT-AT-ACA-GTTTAC-ACTG-ACAAAAACGAAAGGAACAAA----CA-AACTGAACAAAA-CAACTTACACAACATGACACAGAGT-ATACCAG-TT--TAGACTGAACGATG-CTGTA--ACACCCACATGCCTTCCCA-TTCCAG-GAGGAC-ATGAGGCTCTATAAAATGT----GTA-A---AATT-TGATTCAGATCTAAAATGTTCTGGAAGCTCATTCCATAAAAC-GCAGAATGCATAATCTTAAAAGACTTTTTACCATAAGAGTGCTGGTCCTGACTCGAGGTACATCTAAAATGTTACTTATAGTCTAAAACTATAAGGTGAATTCT--TAAGAGTAACTAAATCTGACAGACAGTTTGGGGAAAGGTCAAGGATAA-TTTA-AAACACTCAA-A---T----ACCATGGTTCTCATTCTTTTGAATTTCCAGAGTTTGGC-AATTTGCTCAGATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTCCATCTTAGGACGTACTACCTTGACTCACAAAAATGCCATGCCAT-GGACAAAAATATAAAAGTGGGAGAGAATAAAATATGAAAGATAGTAAATCTGCTTGTGTTTAGATAGAAATAAGCAACCA--TCTTTTAAAGAACATTATAGTTGTTGAGCAGCCTTTCTGCAAATGTTAGTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAAACTTTAACAGA-TCTTC-ACATAATATTTCAGCATTTT----CAATTTTAAAAA-CAGGCTCTCTTTTATA-GTTGGTCCATACCAAACAGCAATAGCTTGGGAGCTGTATCGCCTCATTAGAATTTGCTGGGA-TCG-CCTGC-TACAATGGT-CCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA--AAATAA---TTGTTGGAAATTCTCATGAC--AG-AGGATA-ATGTAT-TG-------TCATCAGCATAATATATAGAGGTGTTCC-T-GTTTGAT-AAATAAAATATTATC---ATTAATAAAAGCATTAAAAC-----AAAAGAGGACTCAAGTAT-GGACCCTTGATGGAACCCCTT-TCTTGATATGCTGACCAGCTGCTCAAGGATCC-ATTGAGTTTTACCTGCTGTAGACGACAGGACAGGTTTAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAACCCGTAGGCTGAAAGTTTACATAA--ACG-GATAT-CA--T-G--GG-CAGGC-A-TCAA-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTAAATTTTGATCTAAC----GCATATTGTCC-AA-TCATCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-CATAAAAAATAACAAAG--GTGAAACAAGGGAAAAATATCATGCA--AAAATAT-----TCT---TGA-AAA--CTGTACAGAC-ATG-ACCTT-TTCATAGATTTTCGACAA---TGGC--GGTGAAAATACCTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|10 : AA--AAG-----T-CAATT-GG-GC-CACGC-AGCC-G-AACGC-CTT-GA-AAA-GATCCAC----A-A-------CAATTG---CA-A--C---CACGCTTTTATGCTGATCTACA----GCTTCCC-TTC-AC-TCTTTCACGAGA---C-GG-ACAAAAGTGGTTTGGTAACCGCAACCGTTCCTGAA-AGCC-G-C-T--AAAA---------------------GGAGACTATTAA-C---AAAAAATAATGATCT------CTAA--TGGT-CGTGG-ATG-ATCCT-TTTATATCATTTCGA-AATTGTGGCC-------AATATCCTAACAGGACGATAATTTT
gi|11 : ggaagcAAGG-ATAA--AGC--A--CACAAAG-CG-AA--TGTATT--AAACTA-TCA---CAA-GGTAAA------C-ACAGA-CT-T-----CAGA----TA--TAT-ACTAGG----CACAAGACAAGAC-ACTA-ATATG--G--TTA-TA-ATT----T--TA--AAGAT-GTTAA-----ATGAAGCACTAAAAG-TA-TGGTAAATGAAT--T-GTAATTAAA--TAC----------------------TGAAACAT-CGGCTTCACTAC-----TAACAG-GCAT-CAAATAGAGCAG--CAT---CAC-AACATAAT-TCA-G-T-ACAACTGGACAAAAAGGAGAGGAGCAGA----C---ATTGAATAAAg
gi|12 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAA-T-AA--C-ACAGA-CTGT-----CAGA----TCTATAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--G--T-A-TA-ATT----T--TA--AAGAT-GTTGGCTTGCA--AAGCACTAAAAG-TA-TGGTAAATGAATG---GTG--TAAA--------------------------------------G-TAAACTAC-----TAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-AATGGACAAAAAAGAAAGGAACA
gi|13 : aTTTTACCGTAAG--TGCTGGTCCTGACTCTGGGTACATCTAAAATGTTAC-TATA-TCTTAAACTATATGATGAACTTTAATAAGAGTATCTAAATCCTATAGACAGTTTGGGGAAAGGCCATGGATAA-TTTTGAAACACTCAAT----T----GCCATGGTTCTCATTCTTTTG-ATTTTGAGAG-TTGGCAAATTTGCTT-GATGTAAAGG-----CA-AAG-ATAATGATTAGTGATCA
gi|15 : tAAAG-ATGA--AGCCAACACACAAGG-CGGAAAAT-TATTTTAAAC-A-TCAAAACAA-AGTAAAT-AAAAC-ACAGAACTGTGTCCCCAGAAAATT---TAT-ACTAGGGCCCCACA-GACAAG-C-CATA--TATG--GGTT-T-TA-TTTAT-TT--TA--AAGTTTGTTGGC----A--AAGCACTAAAAGTTA-TGGTAA
gi|16 : a-ATAA--AGC--A-ACACAAAG-CGGGA--T-TATA--AAACTA-TCA---CAA-GGTAAAT-------TCAGA-CTGT-----CAGA----TA--TAT-ACTTGG----CACA-GAAAAG-C-GCT---T-TG--A--T-A--A-ATTAT-TTGGTATCAAGAT-GTTGT-----A--AAGCACTAAAGG-TA-TGGTAAATAAATA-TAGTG--TGA
gi|17 : aaacaAAAGCATAAGGAGC--A-ACACAAAGTCGGAA--T-TATT--CAACTATTCA---CAACGGTACATAAA--CAACAGA-CTGT-----CAA---------TATGACTACG----CACACGACAAG-CAACTATAAATG--G--T-ACTA-ATT
gi|18 : aaTTTA-ATAA--AAG-TAGAT-CA--T-GA-GG-TATGC-AGTC-A-AATGC-CTT-GG-ACA-AATCCATC-A-GTA-------TT---G---C-TG--C---CACATATTTATTGTAATCTAAC----Gtta
gi|19 : tAA--AGC--A-ACACAAAG-CGGTA--T-TATT--GAATTA-TCA---CAG-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA--------TAT-Atttttttttcca
gi|2 : AACG-ATAA--AGC--A-ACACAAAA-CGG------TATT--AAACTA-CCA---TAT-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA----T----AT-ACTTGG----CACA-GACAAG-C-ACTA-ACATG--G--T-A-TC-A--------------AGAT-GTTGC-----A--AAACACTAAAAG-TA-TAGTAAGTGATTG---GTG--TGAA--TAGAATTAGTCTAGAGCAACACTATC--AACGTATGG-TAAACTATGGCATTAATGCAGCAT-TAACTAGAGCAA--CAT-G-CAC-AGCAT-AT-ACA---------CTGAACAAAAACAAAAGGGACGTA----TA-AACTGAACGAAATCAACC-ACACAACATGACACAG-TTTATAATAAACACTTAAATTGAAT-AT-ACTGTA---CATTTATATGCGTTCC-AATTCCAA-GA-TAT-ATGAAGATCT-TAAAATGT----G-A-ACAT--TT-TTATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCATAAG--CGCTGGTCCTGACTATAGGGACATCTAAAATGTTAC-TATA-TTTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCTGACAAACAGTTTGGGGAAAGGTCATGGATAATTTTT-AAACACTCAATAGCCTATTAGCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGTAAATTAGATT-GATGTAGAAGATCTTCATAAGAACATTGG-TAGTCATTATAA-ATAAATCTTAGCGTTCGTTCTTAG-ATATGCTGCATCTTA-GATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--C-ACCAATTCTTTTC-AGAACATTAAAA-TGTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACTCCCAGAAGCTTT-ACAGACTCTTC-ACA-AAAAATTCAGCATTTT----CGATTCT-AAAA-CAGGTTCTCTTTTATATG--TTTTCATACC-AACAGC-A------G-----TGTATTG--------AAATTTGTTGGGATTCG-CCTGCATACAATTGTCCCTGAACCATTTGA--TTAAAATATTGCTCTCTTTTTGTAATACA-GAAATAAG-TTTGTT-GAAATTCTCATGGC--AGAAAGAAA-ATGTTT-TGAGCATAATTATCAGCATAAT-TATAGA-GTGTTCCTT-GTTTGATGAAATAAAATG-TATCATTATTAATAAAAGCATT-AAACAAATTAAAAGAGGAC-CAAGTATGGG-CCTTTG-TGGAACCCCCTATCTTGATAC-CCGACCACTTGCTCCGAACTCC-AGTGATTTTCACTGACTGTGAACGACAAGACAGG--TGATTTCCCAAAAGTTCTACCGA-TTT-TGAAAA-------------------------AA--AAG-AATAT-GA--T-GT-GG-CCTGCAA-TC-A-AAAGC-TTT--G-AAA-GATCCATTAA-A-A-------CA---G---C-TG--C---CACATGTAAATTTTGATCTAAC----GCATATT-TCC-AA-TCCTGTGGCAGA---C-GG-AGCAATGTGt
gi|20 : a--AAGAT-GTTGC-----A--AAACACTGAAAT-TA-CGGTAAGTGATTG---GTG--TGAA--TAG----------------------
gi|21 : tcTAACAGAGCAT-CAAATAGAGCAG--C-T-GCCAC-AACAT-AT-Aaatt
gi|3 : AG-AATAT-AA--T-GT-GG-CAGGC-AATC-A-AAAGC-ATT-TG-AAA-GATCCATTAA-A-A-------CC---G---C-TG--C---CACATGTAATTTTTTATCTAAC----GCATATT-TCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTAAA-AG-A-A-C-------AT-ACAAAATCG---------TGGAAAATGTTAT-C---AAAATAT-----TCT-----GCTAACTCTATACAGAC-ATG-ACCTT-TTCATAGATTTTCGA-AA---TGGCAGG--TAAAATA-CTT-ACTAGCCTGTAATTTTTCTTCCATTTTTGTATAAAGG
gi|4 : TAAAATCAATGTCTATCCCCAGAGCCTT--ACAGACTCTTCCAC-TAATATTTCAGCATTTTTTTCCAATTTTAAAAAACAG-CTCTCTTTTATATGCTTTTTCATACCAA-CAGC-AT-GCTTG--------ATC-------------TTGCTGGGA-TTGGCTTGCATACAATTGTCCCTGAACGAT--GATT---AAACATTGCTCTCTTCTTGCAATACACGAAATAAGCTTTGTTG-AAATTCTCATGACTAGGAAGGATAGATGTGTATG-------TCATCAGCATAAT-TATAGA-GTGTTC--T-GTTTC-TGAAATAAA-TA-TATC---ATTAATAAAAGCATT-AAAC-----AAA-GAGGAC-CAAGTCT-GA-CCCTTG-TGGAAACCATT-TCTTGATAC-CTGACCAGCTGCTCAGGATCCCAATTGA-TTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTTGTGAAGAGAG-CCGTCGCTCGAAAGTTTAC-TAA--AAGTAATATGCAT-T-GTGGG-CAGGC-A-AT-GCAAAGCTTTT-CGAAAA-GATCCATT-A-A-A----------------CACG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCCAAA-TCCTCTAGCAGTC--C-GGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----TCT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattatttaaaacgttgtcctattcacacaaaataatgttggtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|5 : A--AAGTAATATGCA--TTGT-GGGCAGGC-A-AT-GCAAAGC-TTTTCG-AAAAGATCCATT-A-A-A-------CA---------CG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCC-AAATCCTCTAGCAGT---CCGGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----TCT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCatc
gi|6 : TTGCTCTCGTGTTGTAATACA-GAAATGAG-TTTGTTatcctttttgtatgaaggataacttgggcttgcttaagtctatctgtaaaaaaccctgtactggtagattgattaccgagttcacatatatgcaaagttgataacaggggagcctgctttgagtattttaactggatgtttcgactcctgtggcctttctcagaactaatttgtttgacaatttattgatagtaccaacatctacaatgtttagaactcaacagttgctttctggtatgttacattctgatgaaaggcatgccagaatacgttgttgtatgttcatcaaatgtcacatcttgcctatgtcattagcaacatttacgtaaattcaattaatagtatcacagtagatttccttgctgttattagaactttgcctcttcacagcaacacattaatgtt
gi|6 : AC--AGAA--ATG-A-GT-T-TG-------T--TCAGCATAAT-TATAGA-ATGTTCC-TTGTTTGATGAAATTAAATA-TATT---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-C-----------CCTAG---------CTC-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTATCTGATGTGAATGACAAGACAGG--TAGTTTCCCAAAAGTTCTACAGA-TTT-TGAAGAAAGCCCGTAGGCTGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAG------------------C-CG-AAA-GATCCATTAA-A-A-------CA---GCTACATGTAC---CACATGTACATTTTGATCTAAC----GCATATT-GCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTcagcataattatagaatgttccttgtttgatgaaattaaatatattattaataaaagcattaaacaaaagaggacccctagctctcttgatacctgaccagctgctcaggactccattgatttttatctgatgtgaatgacaagacaggtagtttcccaaaagttctacagattttgaagaaagcccgtaggctgaaagtttacataaaagaatatcatgtggcagccgaaagatccattaaaacagctacatgtaccacatgtacattttgatctaacgcatattgccagtcctctagcagtcggagcaatgtggt
gi|7 : ttgctctcgtgttgtaat--AAGCACTAAAAG-TAATGGTAAATGAATGGT-GTA--TTAAATTAC----------------------T--GAAACATG--TAAACTACTA--CCAACAGAGCATTCACA-GGAGCAGAACATTG-CACGAACAT-ACGACATGTT-AC-ACTGGACAAAA-GGAGAGGAGCAGATTCACATACCTGAACAACA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCT-AACTGAAC-ATGACTGTATTACA-CCACATGCTTGCCCAATTCCAGTGAGTGCAACGAGGCTCT-TAAAATGCTAAGGTATACATAATTATGATTCA
gi|8 : aatCATAAGCAAT-AAT-T-TA--T-GT-AG-TAAGCTA-TC-G-AAGGC-TTT-TG-AGA-GATCCATT-A-G-AACTGCTGCA---G---TATA--TATATATATGTATATATT-ATC-AACAATGGCTTTTT-TCC-AA-TCCTCTA-CAATTTTC----AATAATATTGTGTTGCATCCATAACCTTGTTTAAA-AG-CTG-C-T--AAATTTA----G--GT---------GGAAAATATT-T-CCAAAAAAAAT-----T-------ACTTA--CTGTTT---CTATATAGCTCGCTCAAAAGTCTTCGA-AA---TTGCTGG--TAATAT-GTTT-ACTGGTCTATAGT
gi|9 : ttT-CA--T-GG-GGACAGGC-AGTC-A-TACTC-CGT-TG-ACA-GATCCATA-AGA-A-------TA---G---CA-G--C---CACACTTTTATGCTGATCGAAA----TCTTTCT-TCT-AG-TCTTTCACAAAA---C-GG-AGAAGAGTAGTTTAGCAACCA-AACCTTTTATGAA-AG-T-AGC-T----AAT-----AG--AT--------CTAAAGACATTTT-C---AAAGAAT-----TTTGTATGTTGAA--TTAATCGAGC-ATAGATC-T-TTCATACAATTCAGA-AA---TGGTTGG--CAAAATACA-A-ACAGGGCGATAATTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCTGATAAATATGGGTGGAAAATATTTTTTAAATCTGCTAATTGTTTATATATAGTTCTCTCAAAATTCTTTGAAATTGCTTGTAATATGCTTATTGGTCTATAGTTCTCTACTTCTGATTGGCTGTTTTTCTTATGGATGGATATAACTTGTGCCTCCTTAAGTATTTCTGGGA
Alignments
lowQualScore : 111111 11111 333333333 1111 1 2222222 222222 222 8888888888888888888888888888888888888888 44444 111 11111 2222222 1 1 11111 1 11 222 1 1 1 1 33333333333333 1 1 1 11 111 1 1 11 1 1 5555555555 1 1 11 1 1 1 1 1 1 1 1 2222 11 11 1 22 1 11 2222 1 1 888888888888888888888888888888 1 1 111 11 11 11 11 1 111 3333333 1 1 1111 1 111 1 22222 1 1111 11 1 1 1 11 1 1 1111 22222222 1 2222222222222222222 11111 111 1 88888888888888888888888888888 111 11111 11111111 1 111 11 222222 1
lowQualScore : 5 66 66 5 5 2 66 5 66 5 888 5 666666 5 5 22222 222222222 5 2222 1 5 5 777 88888 666 5 8888888 77 5 111111 66 5 5 333 77 0 1111111111111111111111111111111111111111 0 11111 6 99 111 6 6 6 77777 8 3 11 0 8888888 3 3 7 7 88888 7 3 44 555 2 1 6 7 3 6 3 0 3 33333333333333 3 1 5 5 88 1 0 999 3 3 88 0 3 3 7777777777 3 3 7 44 7 7 7 3 5 5 1 5 1 1 1 5 5 5 1 1 1 1 5 3333 88 66 1 5 1 1 1 00 6 3 44 8888 0 7 3 6 7 2 7 7 333333333333333333333333333333 3 3 7 6 7 333 0 22 22 33 33 3 6 0 3 111 2222222 6 0 0 3333 3 2 3 0 777 0 55555 3 0 3 3 6666 33 2 0 0 0 0 9 33 5 0 2222 3 777 55 66 99 8 99 4 77 8 55555555 2 44 88 4 4 2 4 4 7777777777777777777 55 777 33 11111 4 4 4 1 222 4 8 0 1 88888 77777777777777777777777777777 1 5 555 1 44444 99999999 77 999 6 5 5 0 5 5 000 66 99 88888 0 5 888888 0
lowQualScore : . .. .. . . . .. . .. . ... . ...... . . ..... ......... . .... . . . ... ..... ... . ....... .. . ...... .. . . ... .. . ........................................ . ..... . .. ... . . . ..... . . .. . ....... . . . . ..... . . .. ... . . . . . . . . . .............. . . . . .. . . ... . . .. . . . .......... . . . .. . . . . . . . . . . . . . . . . . . . .... .. .. . . . . . .. . . .. .... . . . . . . . . .............................. . . . . . ... . .. .. .. .. . . . . ... ....... . . . .... . . . . ... . ..... . . . . .... .. . . . . . . .. . . .... . ... .. .. .. . .. . .. . ........ . .. .. . . . . . ................... .. ... .. ..... . . . . ... . . . . ..... ............................. . . ... . ..... ........ .. ... . . . . . . ... .. .. ..... . . ...... .
lowQualScore : 7 99 99 0 0 2 99 0 99 0 888 0 000000 0 0 55555 888888888 0 1111 4 7 7 333 00000 111 7 2222222 99 7 000000 99 0 0 444 99 4 4444444444444444444444444444444444444444 8 22222 7 22 777 7 7 7 44444 0 2 88 2 5555555 3 3 3 3 77777 3 3 00 777 0 0 7 3 3 7 3 7 3 77777777777777 3 0 5 5 55 0 7 000 3 3 33 7 3 3 3333333333 3 3 3 00 3 3 3 3 0 5 0 0 0 0 0 5 5 0 0 0 0 0 0 5555 55 55 0 5 0 0 0 77 7 3 77 3333 7 3 3 7 3 0 3 3 777777777777777777777777777777 3 3 3 7 3 777 2 55 55 33 88 2 5 0 2 888 5555555 5 0 0 5555 2 5 2 0 555 0 00000 2 0 2 0 5555 22 5 0 0 2 0 2 88 5 0 5555 0 000 77 99 99 0 55 0 33 0 77777777 3 55 88 0 0 0 0 0 1111111111111111111 55 000 77 00000 4 4 4 1 222 4 9 1 4 33333 77777777777777777777777777777 7 7 777 0 33333 99999999 99 000 3 7 4 1 7 7 000 00 77 11111 3 0 888888 0
consensus : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--G--T-A-TA-ATTAT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----TCT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
Reference ( family-925 ) : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--G--T-A-TA-ATTAT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----TCT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|1 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTTAAT-A---C-ACAGA-CTGT-----CAGA----T-------ACTAGG----CACA-GACAAG-C-ACTG-ATATGCTG--T-A-TATATTATGTT--TA--AAGAT-GTTGA-----A--AAACACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TAAA--TAG----------------------T--AACATATGGCTAAACT------CTAACAGAG-AT-CAAATAGAGCAG--TAT-G-CAC-AACAT-AT-ACA-GTTTAC-ACTG-ACAAAAACGAAAGGAACAAA----CA-AACTGAACAAAA-CAACTTACACAACATGACACAGAGT-ATACCAG-TT--TAGACTGAACGATG-CTGTA--ACACCCACATGCCTTCCCA-TTCCAG-GAGGAC-ATGAGGCTCTATAAAATGT----GTA-A---AATT-TGATTCAGATCTAAAATGTTCTGGAAGCTCATTCCATAAAAC-GCAGAATGCATAATCTTAAAAGACTTTTTACCATAAGAGTGCTGGTCCTGACTCGAGGTACATCTAAAATGTTACTTATAGTCTAAAACTATAAGGTGAATTCT--TAAGAGTAACTAAATCTGACAGACAGTTTGGGGAAAGGTCAAGGATAA-TTTA-AAACACTCAA-A---T----ACCATGGTTCTCATTCTTTTGAATTTCCAGAGTTTGGC-AATTTGCTCAGATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTCCATCTTAGGACGTACTACCTTGACTCACAAAAATGCCATGCCAT-GGACAAAAATATAAAAGTGGGAGAGAATAAAATATGAAAGATAGTAAATCTGCTTGTGTTTAGATAGAAATAAGCAACCA--TCTTTTAAAGAACATTATAGTTGTTGAGCAGCCTTTCTGCAAATGTTAGTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAAACTTTAACAGA-TCTTC-ACATAATATTTCAGCATTTT----CAATTTTAAAAA-CAGGCTCTCTTTTATA-GTTGGTCCATACCAAACAGCAATAGCTTGGGAGCTGTATCGCCTCATTAGAATTTGCTGGGA-TCG-CCTGC-TACAATGGT-CCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA--AAATAA---TTGTTGGAAATTCTCATGAC--AG-AGGATA-ATGTAT-TG-------TCATCAGCATAATATATAGAGGTGTTCC-T-GTTTGAT-AAATAAAATATTATC---ATTAATAAAAGCATTAAAAC-----AAAAGAGGACTCAAGTAT-GGACCCTTGATGGAACCCCTT-TCTTGATATGCTGACCAGCTGCTCAAGGATCC-ATTGAGTTTTACCTGCTGTAGACGACAGGACAGGTTTAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAACCCGTAGGCTGAAAGTTTACATAA--ACG-GATAT-CA--T-G--GG-CAGGC-A-TCAA-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTAAATTTTGATCTAAC----GCATATTGTCC-AA-TCATCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-CATAAAAAATAACAAAG--GTGAAACAAGGGAAAAATATCATGCA--AAAATAT-----TCT---TGA-AAA--CTGTACAGAC-ATG-ACCTT-TTCATAGATTTTCGACAA---TGGC--GGTGAAAATACCTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|10 : AA--AAG-----T-CAATT-GG-GC-CACGC-AGCC-G-AACGC-CTT-GA-AAA-GATCCAC----A-A-------CAATTG---CA-A--C---CACGCTTTTATGCTGATCTACA----GCTTCCC-TTC-AC-TCTTTCACGAGA---C-GG-ACAAAAGTGGTTTGGTAACCGCAACCGTTCCTGAA-AGCC-G-C-T--AAAA---------------------GGAGACTATTAA-C---AAAAAATAATGATCT------CTAA--TGGT-CGTGG-ATG-ATCCT-TTTATATCATTTCGA-AATTGTGGCC-------AATATCCTAACAGGACGATAATTTT
gi|11 : ggaagcAAGG-ATAA--AGC--A--CACAAAG-CG-AA--TGTATT--AAACTA-TCA---CAA-GGTAAA------C-ACAGA-CT-T-----CAGA----TA--TAT-ACTAGG----CACAAGACAAGAC-ACTA-ATATG--G--TTA-TA-ATT----T--TA--AAGAT-GTTAA-----ATGAAGCACTAAAAG-TA-TGGTAAATGAAT--T-GTAATTAAA--TAC----------------------TGAAACAT-CGGCTTCACTAC-----TAACAG-GCAT-CAAATAGAGCAG--CAT---CAC-AACATAAT-TCA-G-T-ACAACTGGACAAAAAGGAGAGGAGCAGA----C---ATTGAATAAAg
gi|12 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAA-T-AA--C-ACAGA-CTGT-----CAGA----TCTATAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--G--T-A-TA-ATT----T--TA--AAGAT-GTTGGCTTGCA--AAGCACTAAAAG-TA-TGGTAAATGAATG---GTG--TAAA--------------------------------------G-TAAACTAC-----TAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-AATGGACAAAAAAGAAAGGAACA
gi|13 : aTTTTACCGTAAG--TGCTGGTCCTGACTCTGGGTACATCTAAAATGTTAC-TATA-TCTTAAACTATATGATGAACTTTAATAAGAGTATCTAAATCCTATAGACAGTTTGGGGAAAGGCCATGGATAA-TTTTGAAACACTCAAT----T----GCCATGGTTCTCATTCTTTTG-ATTTTGAGAG-TTGGCAAATTTGCTT-GATGTAAAGG-----CA-AAG-ATAATGATTAGTGATCA
gi|15 : tAAAG-ATGA--AGCCAACACACAAGG-CGGAAAAT-TATTTTAAAC-A-TCAAAACAA-AGTAAAT-AAAAC-ACAGAACTGTGTCCCCAGAAAATT---TAT-ACTAGGGCCCCACA-GACAAG-C-CATA--TATG--GGTT-T-TA-TTTAT-TT--TA--AAGTTTGTTGGC----A--AAGCACTAAAAGTTA-TGGTAA
gi|16 : a-ATAA--AGC--A-ACACAAAG-CGGGA--T-TATA--AAACTA-TCA---CAA-GGTAAAT-------TCAGA-CTGT-----CAGA----TA--TAT-ACTTGG----CACA-GAAAAG-C-GCT---T-TG--A--T-A--A-ATTAT-TTGGTATCAAGAT-GTTGT-----A--AAGCACTAAAGG-TA-TGGTAAATAAATA-TAGTG--TGA
gi|17 : aaacaAAAGCATAAGGAGC--A-ACACAAAGTCGGAA--T-TATT--CAACTATTCA---CAACGGTACATAAA--CAACAGA-CTGT-----CAA---------TATGACTACG----CACACGACAAG-CAACTATAAATG--G--T-ACTA-ATT
gi|18 : aaTTTA-ATAA--AAG-TAGAT-CA--T-GA-GG-TATGC-AGTC-A-AATGC-CTT-GG-ACA-AATCCATC-A-GTA-------TT---G---C-TG--C---CACATATTTATTGTAATCTAAC----Gtta
gi|19 : tAA--AGC--A-ACACAAAG-CGGTA--T-TATT--GAATTA-TCA---CAG-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA--------TAT-Atttttttttcca
gi|2 : AACG-ATAA--AGC--A-ACACAAAA-CGG------TATT--AAACTA-CCA---TAT-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA----T----AT-ACTTGG----CACA-GACAAG-C-ACTA-ACATG--G--T-A-TC-A--------------AGAT-GTTGC-----A--AAACACTAAAAG-TA-TAGTAAGTGATTG---GTG--TGAA--TAGAATTAGTCTAGAGCAACACTATC--AACGTATGG-TAAACTATGGCATTAATGCAGCAT-TAACTAGAGCAA--CAT-G-CAC-AGCAT-AT-ACA---------CTGAACAAAAACAAAAGGGACGTA----TA-AACTGAACGAAATCAACC-ACACAACATGACACAG-TTTATAATAAACACTTAAATTGAAT-AT-ACTGTA---CATTTATATGCGTTCC-AATTCCAA-GA-TAT-ATGAAGATCT-TAAAATGT----G-A-ACAT--TT-TTATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCATAAG--CGCTGGTCCTGACTATAGGGACATCTAAAATGTTAC-TATA-TTTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCTGACAAACAGTTTGGGGAAAGGTCATGGATAATTTTT-AAACACTCAATAGCCTATTAGCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGTAAATTAGATT-GATGTAGAAGATCTTCATAAGAACATTGG-TAGTCATTATAA-ATAAATCTTAGCGTTCGTTCTTAG-ATATGCTGCATCTTA-GATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--C-ACCAATTCTTTTC-AGAACATTAAAA-TGTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACTCCCAGAAGCTTT-ACAGACTCTTC-ACA-AAAAATTCAGCATTTT----CGATTCT-AAAA-CAGGTTCTCTTTTATATG--TTTTCATACC-AACAGC-A------G-----TGTATTG--------AAATTTGTTGGGATTCG-CCTGCATACAATTGTCCCTGAACCATTTGA--TTAAAATATTGCTCTCTTTTTGTAATACA-GAAATAAG-TTTGTT-GAAATTCTCATGGC--AGAAAGAAA-ATGTTT-TGAGCATAATTATCAGCATAAT-TATAGA-GTGTTCCTT-GTTTGATGAAATAAAATG-TATCATTATTAATAAAAGCATT-AAACAAATTAAAAGAGGAC-CAAGTATGGG-CCTTTG-TGGAACCCCCTATCTTGATAC-CCGACCACTTGCTCCGAACTCC-AGTGATTTTCACTGACTGTGAACGACAAGACAGG--TGATTTCCCAAAAGTTCTACCGA-TTT-TGAAAA-------------------------AA--AAG-AATAT-GA--T-GT-GG-CCTGCAA-TC-A-AAAGC-TTT--G-AAA-GATCCATTAA-A-A-------CA---G---C-TG--C---CACATGTAAATTTTGATCTAAC----GCATATT-TCC-AA-TCCTGTGGCAGA---C-GG-AGCAATGTGt
gi|20 : a--AAGAT-GTTGC-----A--AAACACTGAAAT-TA-CGGTAAGTGATTG---GTG--TGAA--TAG----------------------
gi|21 : tcTAACAGAGCAT-CAAATAGAGCAG--C-T-GCCAC-AACAT-AT-Aaatt
gi|3 : AG-AATAT-AA--T-GT-GG-CAGGC-AATC-A-AAAGC-ATT-TG-AAA-GATCCATTAA-A-A-------CC---G---C-TG--C---CACATGTAATTTTTTATCTAAC----GCATATT-TCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTAAA-AG-A-A-C-------AT-ACAAAATCG---------TGGAAAATGTTAT-C---AAAATAT-----TCT-----GCTAACTCTATACAGAC-ATG-ACCTT-TTCATAGATTTTCGA-AA---TGGCAGG--TAAAATA-CTT-ACTAGCCTGTAATTTTTCTTCCATTTTTGTATAAAGG
gi|4 : TAAAATCAATGTCTATCCCCAGAGCCTT--ACAGACTCTTCCAC-TAATATTTCAGCATTTTTTTCCAATTTTAAAAAACAG-CTCTCTTTTATATGCTTTTTCATACCAA-CAGC-AT-GCTTG--------ATC-------------TTGCTGGGA-TTGGCTTGCATACAATTGTCCCTGAACGAT--GATT---AAACATTGCTCTCTTCTTGCAATACACGAAATAAGCTTTGTTG-AAATTCTCATGACTAGGAAGGATAGATGTGTATG-------TCATCAGCATAAT-TATAGA-GTGTTC--T-GTTTC-TGAAATAAA-TA-TATC---ATTAATAAAAGCATT-AAAC-----AAA-GAGGAC-CAAGTCT-GA-CCCTTG-TGGAAACCATT-TCTTGATAC-CTGACCAGCTGCTCAGGATCCCAATTGA-TTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTTGTGAAGAGAG-CCGTCGCTCGAAAGTTTAC-TAA--AAGTAATATGCAT-T-GTGGG-CAGGC-A-AT-GCAAAGCTTTT-CGAAAA-GATCCATT-A-A-A----------------CACG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCCAAA-TCCTCTAGCAGTC--C-GGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----TCT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattatttaaaacgttgtcctattcacacaaaataatgttggtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|5 : A--AAGTAATATGCA--TTGT-GGGCAGGC-A-AT-GCAAAGC-TTTTCG-AAAAGATCCATT-A-A-A-------CA---------CG--C---CACATGTAT-TTTGGAT-TAAC-----CATATT-TCC-AAATCCTCTAGCAGT---CCGGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-A-C-------ATAACAAAA--TT--------TGGAAAATATCAT-C---AAAATAT-----TCT---TGACCAA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCatc
gi|6 : TTGCTCTCGTGTTGTAATACA-GAAATGAG-TTTGTTatcctttttgtatgaaggataacttgggcttgcttaagtctatctgtaaaaaaccctgtactggtagattgattaccgagttcacatatatgcaaagttgataacaggggagcctgctttgagtattttaactggatgtttcgactcctgtggcctttctcagaactaatttgtttgacaatttattgatagtaccaacatctacaatgtttagaactcaacagttgctttctggtatgttacattctgatgaaaggcatgccagaatacgttgttgtatgttcatcaaatgtcacatcttgcctatgtcattagcaacatttacgtaaattcaattaatagtatcacagtagatttccttgctgttattagaactttgcctcttcacagcaacacattaatgtt
gi|6 : AC--AGAA--ATG-A-GT-T-TG-------T--TCAGCATAAT-TATAGA-ATGTTCC-TTGTTTGATGAAATTAAATA-TATT---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-C-----------CCTAG---------CTC-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTATCTGATGTGAATGACAAGACAGG--TAGTTTCCCAAAAGTTCTACAGA-TTT-TGAAGAAAGCCCGTAGGCTGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAG------------------C-CG-AAA-GATCCATTAA-A-A-------CA---GCTACATGTAC---CACATGTACATTTTGATCTAAC----GCATATT-GCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTcagcataattatagaatgttccttgtttgatgaaattaaatatattattaataaaagcattaaacaaaagaggacccctagctctcttgatacctgaccagctgctcaggactccattgatttttatctgatgtgaatgacaagacaggtagtttcccaaaagttctacagattttgaagaaagcccgtaggctgaaagtttacataaaagaatatcatgtggcagccgaaagatccattaaaacagctacatgtaccacatgtacattttgatctaacgcatattgccagtcctctagcagtcggagcaatgtggt
gi|7 : ttgctctcgtgttgtaat--AAGCACTAAAAG-TAATGGTAAATGAATGGT-GTA--TTAAATTAC----------------------T--GAAACATG--TAAACTACTA--CCAACAGAGCATTCACA-GGAGCAGAACATTG-CACGAACAT-ACGACATGTT-AC-ACTGGACAAAA-GGAGAGGAGCAGATTCACATACCTGAACAACA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCT-AACTGAAC-ATGACTGTATTACA-CCACATGCTTGCCCAATTCCAGTGAGTGCAACGAGGCTCT-TAAAATGCTAAGGTATACATAATTATGATTCA
gi|8 : aatCATAAGCAAT-AAT-T-TA--T-GT-AG-TAAGCTA-TC-G-AAGGC-TTT-TG-AGA-GATCCATT-A-G-AACTGCTGCA---G---TATA--TATATATATGTATATATT-ATC-AACAATGGCTTTTT-TCC-AA-TCCTCTA-CAATTTTC----AATAATATTGTGTTGCATCCATAACCTTGTTTAAA-AG-CTG-C-T--AAATTTA----G--GT---------GGAAAATATT-T-CCAAAAAAAAT-----T-------ACTTA--CTGTTT---CTATATAGCTCGCTCAAAAGTCTTCGA-AA---TTGCTGG--TAATAT-GTTT-ACTGGTCTATAGT
gi|9 : ttT-CA--T-GG-GGACAGGC-AGTC-A-TACTC-CGT-TG-ACA-GATCCATA-AGA-A-------TA---G---CA-G--C---CACACTTTTATGCTGATCGAAA----TCTTTCT-TCT-AG-TCTTTCACAAAA---C-GG-AGAAGAGTAGTTTAGCAACCA-AACCTTTTATGAA-AG-T-AGC-T----AAT-----AG--AT--------CTAAAGACATTTT-C---AAAGAAT-----TTTGTATGTTGAA--TTAATCGAGC-ATAGATC-T-TTCATACAATTCAGA-AA---TGGTTGG--CAAAATACA-A-ACAGGGCGATAATTTT
blockSeqs : C GG CA C T A AA G TT T AAA C TAAAA A A GTCCC AAATTT G GCCC A A A ATA GGT TA . ATTTGG TC T GCTTGC TG T A TA AT TAGAATTAGTCTAGAGCAACACTATCAACGTATGG GGCAT T AA GC G A G TGTT A G AG TTCACAT T . A T ACACT A . GA TTA T G C A T G A . CTAAGGTATACATA A T A . . G T . . AA T G TAGCCTATTA . . A T A T A T . . G . A A A A . . T C C T . C AT C A . A T G T C C A TTTC A A G T C A A AGTGTATTGA T G A C T TT CG GC G TA A A G T GTA AGCATAA T . . CTT A G A . ATT . AAATT A . A A GGG T C A . A T . T G AAGC C CTC CA GC TA G AT T TG G AGCCG C TT TC A A A G T ACTGCTGCAGTAT TA ATA TA AATGG . A A C TTT C T T CCG ATACAAAATCGT A . CAA A AATGA GTATGTTG CT ATA G T T G . TTG AG GT TCCTA T CTTCCA T
blockSeqs : . . . . . A . . . . . . TAAA . . . TCTAT . . C . . AA G AC . ATTT . . GC . . . GT . TACTGAAACATCGGC TAC . . TG . . . GTT . G AA TA . . . T CTCC . . A . . T . A . . . . TGAACAT . C . . . . . TT . . A T . . . . C . C . T . . . . T . . . ATGCTTGATC . . A C . T G G G . A G . T TT . C . . CTT A G A . . . . A . A C GA T A . . . T . . . GAG A GCT CA . TA G T . G A AGTCA T C G . . A . . CAGCTACAT . . TA G . . . G C . T T CTG ATAACAAAATTT A . . T . TGACC . GTT A . T . . . CG GT AATT T . .
blockSeqs : . . . . . A . . . . . . TAA . . . TAT . . . . . AA G A . T . . A . . . T . ATTACTGAAACATG . . . G . . . GT . A AC C G G . A . . . T . . . . T . G . . . . . . . . . . . . . . . . . . . . . . A . T . . . A . AATCA A C G . . A . . CAATTGCA . . AA G . . . G . . . . TAG ATAACAAAATTT A . . T . TGACC . AAT A . T . . . CG . AATT T . .
blockSeqs : . . . . . G . . . . . . CAA . . . TAT . . . . . AA A T . T . . T . . . . . G . . . G . . . . . G G C . A . . . T . AATCA A T T . . . . . TTGCT . . AT G . . . G . . . . AA TAAATTTAGGT A . . T . GCT . GT A . G . . . TG . GTTT T
blockSeqs : . . . . . A . . . . . . CAA . . . T . . . . . A G A . . . . C . . . . . . . . . . . . . A . . . T . AATGC A A C . . . . . CAGCT . . CA G . . . G . . . . CA TAATAGATC T . . A . ACT . TA G . . . . . TG . CTT .
blockSeqs : . . . . . T . . . . . . T . . . T . . . . . . G A . . . C . . . . . . A . . . T . AATGC A T C . . . . . CCGCT . . TA G . . . G . . . . CA TAAAA . . . A . CT . TA . . . . . . C . CAA .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . A . . . T . TATCG G T T . . . . . TAGCA . . TA T . . . C . . .
blockSeqs : . . . . T . AGTCA C C T . . . . . CAC . . T . . . . . . . .
blockSeqs : . . . G . . . . . . . . . . CAC . . T .
blockSeqCons : TAA*** G**** T****** T** TACTGAAACGTG**************************** GC*** GT*** CA T* CAGCT************** CG*** ATAACAAAATTT***************** *** TGGCT*** GTN CG **
originalCons : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATG--G--T-A-TA-ATTAT-TT--TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TAG----------------------T--AACATATGGCTAAACTAC----CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-------CA---G---CATG--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-A-C-T--AAAATAACAAAG--GT--------TGGAAAATATCAT-C---AAAANAT-----TCT---TGACNAA--CTGTACGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTTAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
finalCons : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAATAA---C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CACA-GACAAG-C-ACTA-ATATGG----T-A-TA-ATTT------TA--AAGAT-GTTGN-----A--AAGCACTAAAAG-TA-TGGTAAATGAATGT--GTG--TGAATACTGAAACGTG----------------------------TAAACTACGC---TAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACAGT---AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-ACAGCT--------------G--C---CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AGCG---CATAACAAAATTT-----------------GGAAAATATCAT-C---AAAANAT-----TCTTGGCT---AA--CTGTNCGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGG--TAAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCTGATAAATATGGGTGGAAAATATTTTTTAAATCTGCTAATTGTTTATATATAGTTCTCTCAAAATTCTTTGAAATTGCTTGTAATATGCTTATTGGTCTATAGTTCTCTACTTCTGATTGGCTGTTTTTCTTATGGATGGATATAACTTGTGCCTCCTTAAGTATTTCTGGGA
Alignments
lowQualScore : 11111 333333333 1111 222222222222222222 11111 222 9999999999999999999999999999999999999999999999999999 111 333333 2222222 1 1 11111 1 11 222 1 1 1 1 33333333333333 1 1 1 11 111 1 1 11 1 1 5555555555 1 1 11 1 1 1 1 1 1 1 1 2222 11 11 1 22 1 11 2222 1 1 888888888888888888888888888888 1 1 111 11 11 11 11 1 111 3333333 1 1 1111 1 111 1 22222 1 1111 11 1 1 1 11 1 1 1111 22222222 111111 2222222222 11111 111 1 444444444444444444444444444444444444 111 11111 333333333 1 111 1111 222222 1
lowQualScore : 5 66 66 5 5 2 66 5 66 5 888 5 00 99999 5 5 22222 222222222 5 2222 5 5 5 5 777 444444444444444444 5 77 66 5 44444 66 66 5 5 333 77 0 6666666666666666666666666666666666666666666666666666 6 99 111 6 6 6 000000 8 3 11 0 8888888 3 3 7 7 88888 7 3 44 555 2 1 6 7 3 6 3 0 3 33333333333333 3 1 5 5 88 1 0 999 3 3 88 0 3 3 7777777777 3 3 7 44 7 7 7 3 5 5 1 5 1 1 1 5 5 5 1 1 1 1 5 3333 88 66 1 5 1 1 1 00 6 3 44 8888 0 7 3 6 7 2 7 7 333333333333333333333333333333 3 3 7 6 7 333 0 22 22 33 33 3 6 0 3 111 2222222 6 0 0 3333 3 2 3 0 777 0 55555 3 0 3 3 6666 33 2 0 0 0 0 9 33 5 0 2222 3 777 55 66 99 8 99 4 77 8 55555555 2 44 88 4 4 999 4 4 1 555555 4444444444 33 11111 4 4 4 1 222 4 8 0 1 666666666666666666666666666666666666 1 5 555 1 44444 5 444444444 77 8 1 6 5 5 0 5 5 000 8888 88888 0 5 888888 0
lowQualScore : . .. .. . . . .. . .. . ... . .. ..... . . ..... ......... . .... . . . . ... .................. . .. .. . ..... .. .. . . ... .. . .................................................... . .. ... . . . ...... . . .. . ....... . . . . ..... . . .. ... . . . . . . . . . .............. . . . . .. . . ... . . .. . . . .......... . . . .. . . . . . . . . . . . . . . . . . . . .... .. .. . . . . . .. . . .. .... . . . . . . . . .............................. . . . . . ... . .. .. .. .. . . . . ... ....... . . . .... . . . . ... . ..... . . . . .... .. . . . . . . .. . . .... . ... .. .. .. . .. . .. . ........ . .. .. . . ... . . . ...... .......... .. ..... . . . . ... . . . . .................................... . . ... . ..... . ......... .. . . . . . . . . ... .... ..... . . ...... .
lowQualScore : 7 99 99 0 0 2 99 0 99 0 888 0 22 11111 0 0 55555 888888888 0 1111 7 7 7 7 333 333333333333333333 7 99 99 7 33333 77 99 0 0 444 99 4 5555555555555555555555555555555555555555555555555555 7 22 777 7 7 7 888888 0 2 88 2 5555555 3 3 3 3 77777 3 3 00 777 0 0 7 3 3 7 3 7 3 77777777777777 3 0 5 5 55 0 7 000 3 3 33 7 3 3 3333333333 3 3 3 00 3 3 3 3 0 5 0 0 0 0 0 5 5 0 0 0 0 0 0 5555 55 55 0 5 0 0 0 77 7 3 77 3333 7 3 3 7 3 0 3 3 777777777777777777777777777777 3 3 3 7 3 777 2 55 55 33 88 2 5 0 2 888 5555555 5 0 0 5555 2 5 2 0 555 0 00000 2 0 2 0 5555 22 5 0 0 2 0 2 88 5 0 5555 0 000 77 99 99 0 55 0 33 0 77777777 3 55 88 0 0 444 0 0 6 555555 5555555555 77 00000 4 4 4 1 222 4 9 1 4 999999999999999999999999999999999999 7 7 777 0 33333 7 111111111 99 9 0 3 7 4 1 7 7 000 0000 11111 3 0 888888 0
consensus : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CAC-A-GACAAG-C-ACTA-ATATG--G----T--A-TA----AT-TT--TA--AAGAT-G-----TTGN-A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TA--------CT-GA-----------AACAT---GGCTAAACTA------CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-G-TT-AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-CAGC------TGC----------CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-GC-------ATAACAAAATT--------T----GGAAAATATCAT-C---AAAANAT-----T-CTTG---ACT-AA--CTGTNCGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGG--T-AAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
Reference ( family-925 ) : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAAAT-AA--C-ACAGA-CTGT-----CAGA----T---TAT-ACTAGG----CAC-A-GACAAG-C-ACTA-ATATG--G----T--A-TA----AT-TT--TA--AAGAT-G-----TTGN-A--AAGCACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TGAA--TA--------CT-GA-----------AACGT---G--TAAACTAC-G---CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-G-T--AC-ACTGGACAAAAANGAAAGGAACAGA----CA-AACTGAACAAAA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCTAAACTGAAC-ATGACTGTA--ACACCCACATGCNTTCCCAATTCCAG-GAGTAC-ACGAGGCTCT-TAAAATGC----GTA-ACATAATT-TGATTCAGATCTAAAATNTTCTGGAAGCTCATTCCATAAAACAGCAGAATGCATAATCTTAAAAGACNTTTTACCGTAAG--CGCTGGTCCTGACTCTAGGTACATCTAAAATGTTAC-TATA-TCTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCCGACAGACAGTTTGGGGAAAGGTCATGGATAA-TTTT-AAACACTCAATA---T----GCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGCAAATTTGCTC-GATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTNCATCTTAGGACGTGCTGCCTTGANTNANAAAAATGCCATGCCATAGGACAAAAATATAAAAGTGGGANAGAATAAANTGTGAANGATNGTAAGTCTGCTTGTGTTTAGATAGGAATAAGCAACCAATTCTTTTNAAGAACATTANAGTTGTTGGGCAGCCTNTCTGCAAATGTCANTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAANCTTT-ACAGACTCTTC-ACATAATATTTCAGCATTTT----CGATTTTAAAAA-CAGGCTCTCTTTTATATGCTTTTTCATACCAAACAGC-AT-GCTTG-----TGTATCG--------GAATTTGCTGGGA-TCG-CCTGCATACAATTGTCCCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA-GAAATAAG-TTTGTTGGAAATTCTCATGAC--AGAAGGATA-ATGTNT-TG-------TCATCAGCATAAT-TATAGA-GTGTTCC-T-GTTTGATGAAATAAAATA-TATC---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-CAAGTAT-GG-CCCTTG-TGGAACCCCTT-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAGCCCGTAGGCCGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAGGC-A-TC-G-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-CAGC------TGC----------CACATGTATATTTTGATCTAAC----GCATATT-TCC-AA-TCCTCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-GC-------ATAACAAAATT--------T----GGAAAATATCAT-C---AAAANAT-----T-CTTG---GCT-AA--CTGTNCGGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGG--T-AAAATANNTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|1 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTTAAT-A---C-ACAGA-CTGT-----CAGA----T-------ACTAGG----CAC-A-GACAAG-C-ACTG-ATATGCTG----T--A-TATATTATGTT--TA--AAGAT-G-----TTGA-A--AAACACTAAAAG-TA-TGGTAAATGAATG-T-GTG--TAAA--TA--------GT-AA-----------CATAT---GGCTAAACT-------CTAACAGAG-AT-CAAATAGAGCAG--TAT-G-CAC-AACAT-AT-ACA-G-TTTAC-ACTG-ACAAAAACGAAAGGAACAAA----CA-AACTGAACAAAA-CAACTTACACAACATGACACAGAGT-ATACCAG-TT--TAGACTGAACGATG-CTGTA--ACACCCACATGCCTTCCCA-TTCCAG-GAGGAC-ATGAGGCTCTATAAAATGT----GTA-A---AATT-TGATTCAGATCTAAAATGTTCTGGAAGCTCATTCCATAAAAC-GCAGAATGCATAATCTTAAAAGACTTTTTACCATAAGAGTGCTGGTCCTGACTCGAGGTACATCTAAAATGTTACTTATAGTCTAAAACTATAAGGTGAATTCT--TAAGAGTAACTAAATCTGACAGACAGTTTGGGGAAAGGTCAAGGATAA-TTTA-AAACACTCAA-A---T----ACCATGGTTCTCATTCTTTTGAATTTCCAGAGTTTGGC-AATTTGCTCAGATGTAAAAGATCTTCATAAGAACAATGG-TAGTCATTATAAGATAAATCTTAGCGCTCGTTCTTGGAATACGCTCCATCTTAGGACGTACTACCTTGACTCACAAAAATGCCATGCCAT-GGACAAAAATATAAAAGTGGGAGAGAATAAAATATGAAAGATAGTAAATCTGCTTGTGTTTAGATAGAAATAAGCAACCA--TCTTTTAAAGAACATTATAGTTGTTGAGCAGCCTTTCTGCAAATGTTAGTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTATTCCCAGAAACTTTAACAGA-TCTTC-ACATAATATTTCAGCATTTT----CAATTTTAAAAA-CAGGCTCTCTTTTATA-GTTGGTCCATACCAAACAGCAATAGCTTGGGAGCTGTATCGCCTCATTAGAATTTGCTGGGA-TCG-CCTGC-TACAATGGT-CCTGAACCATTTGATTTTAAAACATTGCTCTCTTCTTGCAATACA--AAATAA---TTGTTGGAAATTCTCATGAC--AG-AGGATA-ATGTAT-TG-------TCATCAGCATAATATATAGAGGTGTTCC-T-GTTTGAT-AAATAAAATATTATC---ATTAATAAAAGCATTAAAAC-----AAAAGAGGACTCAAGTAT-GGACCCTTGATGGAACCCCTT-TCTTGATATGCTGACCAGCTGCTCAAGGATCC-ATTGAGTTTTACCTGCTGTAGACGACAGGACAGGTTTAATTTCCCAAAAGTTCTACCGATTTT-TGAAGAGAACCCGTAGGCTGAAAGTTTACATAA--ACG-GATAT-CA--T-G--GG-CAGGC-A-TCAA-AAAGC-TTT-CG-AAA-GATCCATT-A-A-A-CAGCA-----TGC----------CACATGTAAATTTTGATCTAAC----GCATATTGTCC-AA-TCATCTAGCAGT---C-GG-AGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAA-AG-C-ACATAAAAAATAACAAAGGTGAAACAAGG----GAAAAATATCATGCA--AAAATAT-----T-CTTG---AA--AA--CTGTACAGAC-ATG-ACCTT-TTCATAGATTTTCGACAA---TGG-CGG--TGAAAATACCTT-ACTGGTCTGTAATTTTT------TCTTTG-ATAGAGGGTC
gi|10 : AA--AAG-----T-CAATT-GG-GC-CACGC-AGCC-G-AACGC-CTT-GA-AAA-GATCCAC----A-A-CAAT------TGCAAC-------CACGCTTTTATGCTGATCTACA----GCTTCCC-TTC-AC-TCTTTCACGAGA---C-GG-ACAAAAGTGGTTTGGTAACCGCAACCGTTCCTGAA-AGCC-GC-----------TAAAA---------------GGAGACTATTAA-C---AAAAAATAATGAT-CT------CT-AA---TGGTCGTGG-ATG-ATCCT-TTTATATCATTTCGA-AATTGTGGCC--------AATATCCTAACAGGACGATAATTTT
gi|11 : ggaagcAAGG-ATAA--AGC--A--CACAAAG-CG-AA--TGTATT--AAACTA-TCA---CAA-GGTA----AA--C-ACAGA-CT-T-----CAGA----TA--TAT-ACTAGG----CACAA-GACAAGAC-ACTA-ATATG--GT---T--A-TA----AT-TT--TA--AAGAT-G-----TTAA-ATGAAGCACTAAAAG-TA-TGGTAAATGAAT--T-GTAATTAAA--TA--------CT-GA-----------AACATC--GGCTTCACTA------CTAACAG-GCAT-CAAATAGAGCAG--CAT---CAC-AACATAAT-TCA-G-T--ACAACTGGACAAAAAGGAGAGGAGCAGA----C---ATTGAATAAAg
gi|12 : AAAG-ATAA--AGC--A-ACACAAAG-CGGAA--T-TATT--AAACTA-TCA---CAA-GGTAA-T-AA--C-ACAGA-CTGT-----CAGA----TCTATAT-ACTAGG----CAC-A-GACAAG-C-ACTA-ATATG--G----T--A-TA----AT-TT--TA--AAGAT-GTTGGCTTGC-A--AAGCACTAAAAG-TA-TGGTAAATGAATG---GTG--TAAA------------------------------------G--TAAACTA------CTAACAGAGCAT-CAAATAGAGCAG--CAT-G-CAC-AACAT-AT-ACA-GTT--AC-AATGGACAAAAAAGAAAGGAACA
gi|13 : aTTTTACCGTAAG--TGCTGGTCCTGACTCTGGGTACATCTAAAATGTTAC-TATA-TCTTAAACTATATGATGAACTTTAATAAGAGTATCTAAATCCTATAGACAGTTTGGGGAAAGGCCATGGATAA-TTTTGAAACACTCAAT----T----GCCATGGTTCTCATTCTTTTG-ATTTTGAGAG-TTGGCAAATTTGCTT-GATGTAAAGG-----CA-AAG-ATAATGATTAGTGATCA
gi|15 : tAAAG-ATGA--AGCCAACACACAAGG-CGGAAAAT-TATTTTAAAC-A-TCAAAACAA-AGTAAAT-AAAAC-ACAGAACTGTGTCCCCAGAAAATT---TAT-ACTAGGGCCCCAC-A-GACAAG-C-CATA--TATG--GGTTTT--A-TTT---AT-TT--TA--AAGTTTG-----TTGGCA--AAGCACTAAAAGTTA-TGGTAA
gi|16 : a-ATAA--AGC--A-ACACAAAG-CGGGA--T-TATA--AAACTA-TCA---CAA-GGTAAAT-------TCAGA-CTGT-----CAGA----TA--TAT-ACTTGG----CAC-A-GAAAAG-C-GCT---T-TG--A----TAAA-TT----AT-TTGGTATCAAGAT-G-----TTGT-A--AAGCACTAAAGG-TA-TGGTAAATAAATA-TAGTG--TGA
gi|17 : aaacaAAAGCATAAGGAGC--A-ACACAAAGTCGGAA--T-TATT--CAACTATTCA---CAACGGTACATAAA--CAACAGA-CTGT-----CAA---------TATGACTACG----CAC-ACGACAAG-CAACTATAAATG--G----T--ACTA----AT-TT--TA--
gi|18 : aaTTTA-ATAA--AAG-TAGAT-CA--T-GA-GG-TATGC-AGTC-A-AATGC-CTT-GG-ACA-AATCCATC-A-GTA-TTGC------TGC----------CACATATTTATTGTAATCTAAC----G
gi|19 : tAA--AGC--A-ACACAAAG-CGGTA--T-TATT--GAATTA-TCA---CAG-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA--------TAT-Atttttttttcca
gi|2 : AACG-ATAA--AGC--A-ACACAAAA-CGG------TATT--AAACTA-CCA---TAT-GGTAAAC-AA--C-ACAGA-CTGT-----CAGA----T----AT-ACTTGG----CAC-A-GACAAG-C-ACTA-ACATG--G----T--A-TC----A-----------AGAT-G-----TTGC-A--AAACACTAAAAG-TA-TAGTAAGTGATTG---GTG--TGAA--TAGAATTAGTCTAGAGCAACACTATCAACGTATGG--TAAACTAT-GGCATTAATGCAGCAT-TAACTAGAGCAA--CAT-G-CAC-AGCAT-AT-ACA----------CTGAACAAAAACAAAAGGGACGTA----TA-AACTGAACGAAATCAACC-ACACAACATGACACAG-TTTATAATAAACACTTAAATTGAAT-AT-ACTGTA---CATTTATATGCGTTCC-AATTCCAA-GA-TAT-ATGAAGATCT-TAAAATGT----G-A-ACAT--TT-TTATTCAGATCTAAAATTTTCTGAAAGCTCATTCCATAAAACAGCAGA-TGTATA--TTTAAAAGACGTTTTACCATAAG--CGCTGGTCCTGACTATAGGGACATCTAAAATGTTAC-TATA-TTTAAAACTATATGATGAATTCT--TAAGAGTAACTAAATCTGACAAACAGTTTGGGGAAAGGTCATGGATAATTTTT-AAACACTCAATAGCCTATTAGCCATGGTTCTCATTCTTTTG-ATTTTCAGAG-TTGGTAAATTAGATT-GATGTAGAAGATCTTCATAAGAACATTGG-TAGTCATTATAA-ATAAATCTTAGCGTTCGTTCTTAG-ATATGCTGCATCTTA-GATGTGCTGCCTTAAATAAAAAAAATGCCATATCATAGGACAAAAAT-TAAAA-TGGGATAGAATAAACTGTGAACGATTGTAAGTCTGCTTGT-TTTAGATAGGAATA--C-ACCAATTCTTTTC-AGAACATTAAAA-TGTTGGGCAGCCTATTTGCAAATATCATTTATATGACACTCAAAATTAAGTTTAAAATCAATGTCTACTCCCAGAAGCTTT-ACAGACTCTTC-ACA-AAAAATTCAGCATTTT----CGATTCT-AAAA-CAGGTTCTCTTTTATATG--TTTTCATACC-AACAGC-A------G-----TGTATTG--------AAATTTGTTGGGATTCG-CCTGCATACAATTGTCCCTGAACCATTTGA--TTAAAATATTGCTCTCTTTTTGTAATACA-GAAATAAG-TTTGTT-GAAATTCTCATGGC--AGAAAGAAA-ATGTTT-TGAGCATAATTATCAGCATAAT-TATAGA-GTGTTCCTT-GTTTGATGAAATAAAATG-TATCATTATTAATAAAAGCATT-AAACAAATTAAAAGAGGAC-CAAGTATGGG-CCTTTG-TGGAACCCCCTATCTTGATAC-CCGACCACTTGCTCCGAACTCC-AGTGATTTTCACTGACTGTGAACGACAAGACAGG--TGATTTCCCAAAAGTTCTACCGA-TTT-TGAAAA-------------------------AA--AAG-AATAT-GA--T-GT-GG-CCTGCAA-TC-A-AAAGC-TTT--G-AAA-GATCCATTAA-A-A-CAGC------TGC----------CACATGTAAATTTTGATCTAAC----GCATATT-TCC-AA-TCCTGTGGCAGA---C-GG-AGCAATGTGt
gi|20 : a--AAGAT-G-----TTGC-A--AAACACTGAAAT-TA-CGGTAAGTGATTG---GTG--TGAA--TA--------
gi|21 : tcTAACAGAGCAT-CAAATAGAGCAG--C-T-GCCAC-AACAT-AT-Agaatt
gi|3 : AG-AATAT-AA--T-GT-GG-CAGGC-AATC-A-AAAGC-ATT-TG-AAA-GATCCATT-A-A-AACCGC------TGC----------CACATGTAATTTTTTATCTAAC----GCATATT-TCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTCTGGCATCCATGACCTTTCCTAAA-AG-A-AC-------AT-ACAAAATCG-------T----GGAAAATGTTAT-C---AAAATAT-----T-CT-----GCT-AACTCTATACAGAC-ATG-ACCTT-TTCATAGATTTTCGA-AA---TGGCAGG--T-AAAATA-CTT-ACTAGCCTGTAATTTTTCTTCCATTTTTGTATAAAGG
gi|4 : TAAAATCAATGTCTATCCCCAGAGCCTT--ACAGACTCTTCCAC-TAATATTTCAGCATTTTTTTCCAATTTTAAAAAACAG-CTCTCTTTTATATGCTTTTTCATACCAA-CAGC-AT-GCTTG--------ATC-------------TTGCTGGGA-TTGGCTTGCATACAATTGTCCCTGAACGAT--GATT---AAACATTGCTCTCTTCTTGCAATACACGAAATAAGCTTTGTTG-AAATTCTCATGACTAGGAAGGATAGATGTGTATG-------TCATCAGCATAAT-TATAGA-GTGTTC--T-GTTTC-TGAAATAAA-TA-TATC---ATTAATAAAAGCATT-AAAC-----AAA-GAGGAC-CAAGTCT-GA-CCCTTG-TGGAAACCATT-TCTTGATAC-CTGACCAGCTGCTCAGGATCCCAATTGA-TTTTACCTGCTGTGAACGACAGGACAGG--TAATTTCCCAAAAGTTCTACCGATTTTGTGAAGAGAG-CCGTCGCTCGAAAGTTTAC-TAA--AAGTAATATGCAT-T-GTGGG-CAGGC-A-AT-GCAAAGCTTTT-CGAAAA-GATCCATT-A-A-A-CA--------CGC----------CACATGTAT-TTTGGAT-TAAC-----CATATT-TCCAAA-TCCTCTAGCAGTC--C-GGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-AC-------ATAACAAAATT--------T----GGAAAATATCAT-C---AAAATAT-----T-CTTG---ACC-AA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTT-AAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCagtaacttggtcttgcttaaatctgtctgggaaaaaaaccctgtactgatagattgattgaccagtttacatacatgtatgaaagttgataatactggggagtctgctttgagtattttaactgtccgatgttgtcgactaccgtggcctagctagcttttagaacctaatttgttgacaattttgttgatggtaccaacatctattgctttctggcaatgtatagcatccacgctacagttgttatgttaatcaaatgccacatccttgcctaagtcattaattagcaacatttacgtaaaattcactcaaaagtatcacatatttccttgctattatttaaaacgttgtcctattcacacaaaataatgttggtatcatcagttatactttttctagacaaatggcttgatagtaggccagaatttagtagatttctgacctcccacacacctttctgaaatgtgttttcttattgaatttctctttcatctatattgaccaaatttctctgtactctatttcttccagtttttgtctgatttatgtttttcaaatttccctcttaacatctgtttcttttatacagcttttcttaaggaactactagatctattcatgcaaggcacatagtttttcttgattgtcgtgtttttccaaggggcgtacttatctatacaacctgaatttaaaagctttttcaaaattgttgtagttttcagttactgactcggggttattgatcgaaactggggatggcatatcaatattctgcaaatatgaaagtttttgtatgatcaca
gi|5 : A--AAGTAATATGCA--TTGT-GGGCAGGC-A-AT-GCAAAGC-TTTTCG-AAAAGATCCATT-A-A-A-CA--------CGC----------CACATGTAT-TTTGGAT-TAAC-----CATATT-TCC-AAATCCTCTAGCAGT---CCGGTAGCAGTGTGGTCTGGCATCCATGACCTTTCCTGAATAG-C-AC-------ATAACAAAATT--------T----GGAAAATATCAT-C---AAAATAT-----T-CTTG---ACC-AA--CT-TACAGAC-ATGTACCTT-TTCATAGATTTTCGA-AA---TGGCCGGGTT-AAAATAAATT-ATTGGTCTGTAA-TTTT------TCTTTG-ATAGAGGGTCatc
gi|6 : TTGCTCTCGTGTTGTAATACA-GAAATGAG-TTTGTTatcctttttgtatgaaggataacttgggcttgcttaagtctatctgtaaaaaaccctgtactggtagattgattaccgagttcacatatatgcaaagttgataacaggggagcctgctttgagtattttaactggatgtttcgactcctgtggcctttctcagaactaatttgtttgacaatttattgatagtaccaacatctacaatgtttagaactcaacagttgctttctggtatgttacattctgatgaaaggcatgccagaatacgttgttgtatgttcatcaaatgtcacatcttgcctatgtcattagcaacatttacgtaaattcaattaatagtatcacagtagatttccttgctgttattagaactttgcctcttcacagcaacacattaatgtt
gi|6 : AC--AGAA--ATG-A-GT-T-TG-------T--TCAGCATAAT-TATAGA-ATGTTCC-TTGTTTGATGAAATTAAATA-TATT---ATTAATAAAAGCATT-AAAC-----AAAAGAGGAC-C-----------CCTAG---------CTC-TCTTGATAC-CTGACCAGCTGCTCAGGACTCC-ATTGATTTTTATCTGATGTGAATGACAAGACAGG--TAGTTTCCCAAAAGTTCTACAGA-TTT-TGAAGAAAGCCCGTAGGCTGAAAGTTTACATAA--AAG-AATAT-CA--T-GT-GG-CAG------------------C-CG-AAA-GATCCATTAA-A-A-CAGCTACATGTAC----------CACATGTACATTTTGATCTAAC----GCATATT-GCC-AG-TCCTCTAGCAGT---C-GG-AGCAATGTGGTcagcataattatagaatgttccttgtttgatgaaattaaatatattattaataaaagcattaaacaaaagaggacccctagctctcttgatacctgaccagctgctcaggactccattgatttttatctgatgtgaatgacaagacaggtagtttcccaaaagttctacagattttgaagaaagcccgtaggctgaaagtttacataaaagaatatcatgtggcagccgaaagatccattaaaacagctacatgtaccacatgtacattttgatctaacgcatattgccagtcctctagcagtcggagcaatgtggt
gi|7 : ttgctctcgtgttgtaat--AAGCACTAAAAG-TAATGGTAAATGAATGGT-GTA--TTAAATTA--------CT-GA-----------AACAT---G--TAAACTACTA---CCAACAGAGCATTCACA-GGAGCAGAACATTG-CACGAACAT-ACGACATG-TT-AC-ACTGGACAAAA-GGAGAGGAGCAGATTCACATACCTGAACAACA-CAACT-ACACAACATGACACAGAGTTATACCAG-CTCCT-AACTGAAC-ATGACTGTATTACA-CCACATGCTTGCCCAATTCCAGTGAGTGCAACGAGGCTCT-TAAAATGCTAAGGTATACATAATTATGATTCA
gi|8 : aatCATAAGCAAT-AAT-T-TA--T-GT-AG-TAAGCTA-TC-G-AAGGC-TTT-TG-AGA-GATCCATT-AGA-A-CTGC------TGCAGTATATATATATATGTATATATT-ATC-AACAATGGCTTTTT-TCC-AA-TCCTCTA-CAATTTTC----AATAATATTGTGTTGCATCCATAACCTTGTTTAAA-AG-CTGC--------TAA----ATT--------TAGGTGGAAAATATT-T-CCAAAAAAAAT-----TACTT---------A--CTGTTT---CTATATAGCTCGCTCAAAAGTCTTCGA-AA---TTGCTGG--T-AATAT-GTTT-ACTGGTCTATAGT
gi|9 : ttT-CA--T-GG-GGACAGGC-AGTC-A-TACTC-CGT-TG-ACA-GATCCATA-AGA-A-TAGC------AGC----------CACACTTTTATGCTGATCGAAA----TCTTTCT-TCT-AG-TCTTTCACAAAA---C-GG-AGAAGAGTAGTTTAGCAACCA-AACCTTTTATGAA-AG-TAGC--------TAAT-AGATC--------T-----AAAGACATTTT-C---AAAGAAT-----T--TTGTATGTTGAA--TTAATCGAGC-ATAGATC-T-TTCATACAATTCAGA-AA---TGGTTGG--C-AAAATACA-A-ACAGGGCGATAATTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGCTGATAAATATGGGTGGAAAATATTTTTTAAATCTGCTAATTGTTTATATATAGTTCTCTCAAAATTCTTTGAAATTGCTTGTAATATGCTTATTGGTCTATAGTTCTCTACTTCTGATTGGCTGTTTTTCTTATGGATGGATATAACTTGTGCCTCCTTAAGTATTTCTGGGA