lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 3333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 11 444444444 111 1 1 3333333333333 1111 777777777777777777777777777 1 1
lowQualScore : 7777 6 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9999 111 22 1 444444444 777 4 0 5555555555555 44 4444 2 555555555555555555555555555 3 11 7 3
lowQualScore : .... . ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .... ... .. . ......... ... . . ............. .. .... . ........................... . .. . .
lowQualScore : 0000 7 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0000 666 00 0 000000000 000 5 0 6666666666666 22 2222 0 000000000000000000000000000 3 77 3 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATACTTGAACGGGCATGGACACGAT---TTT-CTGACCGAT-GAAATTG----GACAGTTTAGCTTNTTCT------TTTGTTATAGAAACAC-AA--TCTTT-TATAAAN-AGTGGATTA-A--AAATATTTTTACACA---AGATACA-TACTTNGTATTTACACAAAAATC-TG----------TNTTTT-C--A----CAC--GTTTGTCAT---AGCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT--A---T--AAA-A---T-AC---GTCG--AAAGCACTC-AACANT--------T--------GTTAATGATAAATCAATTN-AAGGAG-CAAGCACAAAGAAGAANG---AAC--GAAA-------ATTT-T---GTTGTAAA-------A----C---TCT--TTTC--ACCGAAG--CC----------GTCA-C---------------A-----------T-GTT--------G--A-------GTC-----A---CGTG---A-C--GTGT----AAACAT----AA-------AC-TGGGCTCGTGCC-TTG-T-TGAAAATGAN-AANTTTT---AGACGTCTC-AA-A----TACATCT-TTGCGTCAG-NTTTTGAAATT--TAGGTTTGTTGNTATGTTT-TATACG---AATC-A----AATACTATCACG----TTATTAATCAA-----AT-NTCA---------CG-CAGAATCG-TGTCCATGC-CCCTTTAA
Reference ( gi|1 ) : ATTTGCTAACAATGCATCCTTGCTTTTTCAGTATTTTCAAAGGGGCATGGACACAATCAATTT-TTGATCAAT-GAAATTGTCTTGACAGTTGGGTTTTTTTTTGTTTGTTTGTTATAGAAATACAAA--TCTTT-TACAAAGGAGCGGATTA-A--AAATATCTTTAAACA---AGATACA-TACTTTGTATTTACATAAAAGTT-TG----------TTCTTT-T--A----CAT--GCTTGTCATTATAGCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTA---TTCAAA-A---T-AC---GTCA--AAAGCAGTC-AACAGT--------T--------GTTCATGAAAAATCAATTT-TAGTAA-CAAGCTCAAGGAAGAATG---A----GAAA-------ATTT-T---GTTACAAA-------A----T---TTT--TCTC--ACTGAAG--CC----------GTCA-----------------A-----------T-GTT--------G--A-------GTC-----A---CATG---A-C--ATGT----AAACAT----AG-------AC-TGTGCTCATGCC-TTGTTTTGAAAATGAG-AATTTTTTTAAAATGTCTCAAA-A----TACACCT-TTGTATTAG-TTTTTGAAATT--T--GTTCGTTGCTATGCTT-TACACA---ACTC-A----AATACTATCATG----TTATCAATTAA-----AT-TTCA---------CATCAAAATCG-TGCTCATGC-CCCTTTAA
gi|9 : TTCAGTATACT-GAATAGGCATGAACATGAT----TT-CTGACGAAT-GAAATTA-------AG---AGTTTTTT-----------GTTATAGAAAAATGA----CATTATATCAATAAG----TTA-ATGAAGTATTTTT---CA---AGG-ATA-TACTTGGTATTTACAT-TAAGTT-TG----------TGTTTT-CA-A----CACCGGCTTG----------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCTACA---ATCAAACAAATT-AC----TCT--AAGGCACTT-TACAAT--------G--------GT
gi|17 : gatataaatatagtaaatttacataatataaTTAAGGGGACATGGACACAAT---TTTATTG--CAAA-AAAATTGaag
gi|3 : aaatcctatcatatcattgatcaaatatAACGGGCAAGGACAC---CA-TTT-CTCATCGATTGAAAT------GACAGTTTAACTTATTCT-----ATTT--TAT-GAA-----------------CAAAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAAA--ACCCGGC---TCCCCAAA--TCGTG----------TTTGTC-G--A----CAC--GTTTGTCATT---GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCTAAA---T--AGT-A---TAAT---GTCA--GAAGCACTC-AACATT--------T--------CGTCATACAATATCAgt
gi|5 : tTTTTTCGTTATAGAGATA-----------------AAGAGTGGATTATG--AAATAATTTTACAGA---GGATATACTACAT-GTATTTACAAGAAAATC-TGGCTACCAAAATTGTTTGTCAA----CAC--GCATGTCAG---AGCCAGGAAATCACGTGCGGAGGTCAGAA--GACCA-ATTTTGCTAAGATGTACATG---T-AT---GTCT--AAATCGTTCTAGAAGT--------C--------GTTAATGATAAACCAATTC-AAGGAG-GAAGCTAAAAGAAGAAGGGACA----GAAA-------ATTTGT---GTTTCAAATGTTTTGA----T---TTTGATTTC--ACTGAAG--CC----------GTCA-----------------A-----------C-Ggggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|11 : ttgaaaatgacaTTATTATA--AACACAAAGATCTTT-TATAAATT------TTT-T--TACTATTTTTACACA---AGATA---TAATTTGTATCTACATAAAA-----------------------T-------CGT--GATTGTCAT---AGCCACGAAACCACACACGGAAGCGAGAA-CACCAAGA----TTTA------AAA-A---A-AA---ACCA--ACACTA-TC-ACCATTTTGACATAT--------GTTAATGATAAATCAA-TT-NAGT
gi|2 : TATTATGTAAACACCCA--TCTTC-TATA--------GATTT-A--AAATATTTCCACACA---AGATAC---ACTTCGTCTTTACACAAAA
gi|14 : A---AGATGCA---CTTTGTATTTACA-AAAAATT-CG-----------GCTCT-C--AAAACCAC--GTTTGTCAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|4 : attttgatataaacaaactaagtggatta--A----CAT--GTTTGTCAT---AGTCAGGAAACCACGTTTGGAGGTGAAGA------AGACTTCT----------AA-A---T-ACTGTATTG--AAAGCATTC-AACATT--------TTGACATACACTAATGATAAATCAACTT-AGGGAG-CACGCCCAATTAAGAAAG---AGCAGGAAA-------ATGT-T---GCTGTAAA-------AGCTTT---TCT--TTTC--ACTGA--------------------------------------------------------------------------TC-----A---CAGG--------GTTT----AAGC------------------------CATGTT-TT-----GAAAATGAACAATTT-----AGATGTCTC-CA-A----CACATCTATTGCG--AGTTTTTTCAAATT--TAGGCTTGTTGGTATGTTT-TACATG---AACC-A----TACACTAT-ATG----acacactgtcatt
gi|2 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaGAAAACCACGTGCGGAGGTGAGAAC-ACCAAGATTT----G---TAAAAA-G---T-AT---GTTATTACGACA-TA-GATTAT--------T--------GCTTA------ATTTATCTATAG--A-CACACACAAAGAAGAACT---A----AAAA-------ATTT-G---GTTGTAAA-------G----C---TCT--TTTC--TCCAAAG--CC----------GCCA-----------------AATTGGGGGCCCT-GTT--------GATA-------GTCGAGTAA---CGTA---C-C--ATGT----AAAGATAAGCAA-------AC-TTCGCTCGTG--------------ATGAT-AAGTTT----AGATGTCTT-AA-A----TACATAT-TTGCGTCAG-ATTTTAACATT--T-------TTAAAGTG-TT-CATACA-----TC-A----AATACTGCCACATTACTTATTAATTAGTAATTAT-TTCA---------C--CAGAATCG-TGTCCATAC-CTTTGTAAattttgaccaagg
gi|6 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgtctttacacaaaacacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttAAATTAATTA--AGAAAGCAAGCACAAAGAAGTAAG---AACT-GAAC-------ATTT-TC--ATTGTAAA-------AA---C---TCT--TTTC--TCCGAAGAGCC----------GTCA-----------------ACTTTGGCGCCAT-GTT--------G--ATAGCCGAGTC-----T---CGTA---A-C--ATGT----AAAGAT----AA-------ACATG-GATCGTGCC-TTACTATGAAAATGagt
gi|8 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttctAAATTAATTA--AGAAG-CAAGCACAAAGAAGTAAG---AACTGGAAAC------ATTT-TCATGCTA-AAA-------A----CCTCTTT--TCTCCGAAGGAAG--CC----------GTCAACTTTGGCGCC------A-----------T-GTTGATAGTCCG--A-------GTC-----T---CGTA---AGC--ATGT----AAAGAT----AA-------ACATGGGATCGTGCTATTACTATGAAAtttcaaatacattttggcgtcagtt
gi|7 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattctAATG---A----TAAATCAATTTATTT-G---GTTCTAAG-------G----T---TTT--TTT---ACTGAAG--CCAAAAACTTTTGACACC---------------A-----------T-GTT--------G--ATG-----GTC-----AAGTCATGTAAA-C--ATGTGTGCAAACAA----AGGTAACAAAC-AGGGCTCGGGTC-CT----TGAAAACCAA-AAGTTT----AGATGTCTCTAATACTGTTACATCT-TTGTGTCAG-TTTTTGATATTGAG--GTTGGTTGC--TGTTT-TATATATGTA-TG-A----AAGACTATCACG----CTATTAAACAA-----ATATTCA---------tgtttcaaatacattttggcggtca
gi|10 : acattcaacattttgaaataggttCAGA-------A----C---GTT--TCTC--ACCGAAG--CC----------TTCAGCTTTTGCAATATGGTAA-----------TAGTT--------G--A-------GTT-----A---TGTG---A-C--AGGT----AAACAT----AA-------G---GGACTCGTGCT-TGGGTTTGAAAATGA--AACTTTT---AAACGTTTC-AA-A----TATATAT-TTGagta
gi|13 : gtacattatttatatT--------G--A-------GTC-----A---CTGG---A-CTCGTGT----AAACAT----AG-------AC-AGGACTCGTGCC-TTGTTTAGAAAATGAC-AA---GTTTAGA---TCT----------TAC--------TGTCAG-GCGTTGTAATT--TAGGTTTGTCGTTATGTTTGTATACA---AATCTAATGTAATGCTATCATA----TTATcgaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|3 : TTTAGA-CATCTCAAA------TACACCT-CTGTATCAG-CTTGTGGAATT--TAGGTTTGTa
gi|10 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtgattaaaagACACT---AATC-A----AATG-TA--ATG----ATATCAATTAA-----AT-GT-A---------CGC---AATCGATTCTC-TGCTCCCTTT
gi|17 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatata-A----AATCCTATCATA----TCATTGATCAA-----AT-ATCAATTTTTTTGCAATAAAATTG-TGTCCATGT-CCCCTTAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|15 ): AAAGACTGAAAAGTTTTGCAGTGAAAGCTTTTTTTCAGCGAAGCTATAAAGTTTGGCGTTTGATAACTGAGTCTCTTATCATGTAA
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 2 222222 1 4444444 44444444444444444 1 555555555555555555555555555 1111 5555555555555555555555 111 111111 777777777777777777777777777777777777777777777777 1111111 66666666666666666666666666666666666666666666666666666666666666666666666 3333 222222222222 1111 2222222222 2222222222222222222222222222222222222222222 11111 22222222222 111111111111 11 555555555555555555555555555555 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 4 3 3 3 999999 0 0 3 6666666 11111111111111111 3 0 222222222222222222222222222 0000 0000000000000000000000 555 5 2 888888 5 77 999999999999999999999999999999999999999999999999 777 3 0000000 1 5 1 55 22222222222222222222222222222222222222222222222222222222222222222222222 5 9999 777 1 5 3 5555 5 888 5 888888888888 66 0 0000 66 1111111111 0000000000000000000000000000000000000000000 22222 33333333333 2 999999999999 44 888888888888888888888888888888 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 8888888888888888 0
lowQualScore : . . . . ...... . . . ....... ................. . . ........................... .... ...................... ... . . ...... . .. ................................................ ... . ....... . . . .. ....................................................................... . .... ... . . . .... . ... . ............ .. . .... .. .......... ........................................... ..... ........... . ............ .. .............................. . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 000000 7 7 3 0000000 11111111111111111 7 8 333333333333333333333333333 1111 7777777777777777777777 000 0 2 999999 9 00 000000000000000000000000000000000000000000000000 111 1 6666666 6 7 4 99 11111111111111111111111111111111111111111111111111111111111111111111111 7 4444 111 9 4 0 0000 0 999 0 888888888888 99 8 6666 99 9999999999 4444444444444444444444444444444444444444444 55555 99999999999 5 888888888888 99 111111111111111111111111111111 2 4 888888 9 4 4 77 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 0000000000000000 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT---TT-CTGATCGAT-GAAATTG----GACAGTTTGGCTT-TTTTT------TTGTTATAGAAACACG-A---TCTT-TATAAAG-AGTGGATTA-A--AAATATTT----------------------TT--ACACA-AGATAC-A-TACTTTGTATT-TACAT--------AAA--AATCCG-----------TGC---TT-TC-AA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTC--T--A-----N--AA--A-A------T-AC---GTCGA-A--AGCAC----T-C-GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAANGAAC--GAAA-ATTT-T-GTTG-TAAA-------A----CTCT--TTTCACC----GAAG--CC----------GTCAACTTTGGCGCC-ATG-------TT--------G--A-------GTC-----ACGTGA-----C--GTGTAAANA-------T----AAAC-NGGGCTCGTGCCTTG--TT--GAAAATGA-AANTTTT---AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATACTTGAACGGGCATGGACACGAT---TTTCTGACCGAT-GAAATTG----GACAGTTTAGCTTNTTCTT------TTGTTATAGAAACACA-A---TCTTTTATAAAN-AGTGGATTA-A--AAATATTT----------------------TT--ACACA-AGATAC-A-TACTTNGTATT-TACAC--------AAA--AATCTG-----------TNT---TT-TC-A----CAC--GTTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTC--T--A-----T--AA--A-A------T-AC---GTCGA-A--AGCAC----T-C-AACANTT--------GTTA-ATGATAAATC----AATTNAAGGAGCAAGCACAAAGAAGAANGAAC--GAAA-ATTT-T-GTTG-TAAA-------A----CTCT--TTTCACC----GAAG--CC----------GTCA----------C-ATG-------TT--------G--A-------GTC-----ACGTGA-----C--GTGTAAACA-------T----AAAC-TGGGCTCGTGCCTTG--TT--GAAAATGANAANTTTT---AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-NTTTTGAAATTTAGGTTTGTTGNTATGTTT-TATACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AGAATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTTGGGTTTTTTTTTGTTTGTTTGTTATAGAAATACA-AA--TCTTTTACAAAGGAGCGGATTA-A--AAATATCT----------------------TT--AAACA-AGATAC-A-TACTTTGTATT-TACAT--------AAA--AGTTTG-----------TTC---TT-TT-A----CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTT--A-----TTCAA--A-A------T-AC---GTCAA-A--AGCAG----T-C-AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-ATTT-T-GTTA-CAAA-------A----TTTT--TCTCACT----GAAG--CC----------GTCA------------ATG-------TT--------G--A-------GTC-----ACATGA-----C--ATGTAAACA-------T----AGAC-TGTGCTCATGCCTTGTTTT--GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATC---AAAATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACC----GAAG--CC----------TTCAGCTTTTGCAAT-ATGGTAATAGTT--------G--A-------GTT-----ATGTGA-----C--AGGTAAACA-------T----AAG---GGACTCGTGCTTGGGTTT--GAAAATGA-AACTTTT---AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatata------TTATTATA--AACACA-AAGATCTTTTATAAAT-TTTT--TTA-C-----TATTT----------------------TT--ACACA-AGATA----TAATTTGTATC-TACAT--------AAA--A-TC-G-----------T---------------------GATTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-----A-----A--AA--A-A------A-AC-----CAACACTATCACCATTT-T-GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : T--------G--A-------GTC-----ACTGGA-----CTCGTGTAAACA-------T----AGAC-AGGACTCGTGCCTTG--TTTAGAAAATGACAAG-TTT---AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : A-AGATGC-A---CTTTGTATT-TACA---------AAA--AATTCG------------GC---TC-TC-AAAACCAC--GTTTGT---C---Aa
gi|17 : attttgatataaacaaactaagtggatta-A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAAacacactgtcatt
gi|2 : TATTATGTAAACACCCA---TCTTCTATA--------GATTT-A--AAATATTTCCACACAAGATACACTTCGTCTTT--ACACA-AAACAC-G-G---TGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TC-A----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTG--T--A-----A--AA--A-G------T-AT---GTT---------AT----TAC-GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-ATTT-G-GTTG-TAAA-------G----CTCT--TTTCTCC----AAAG--CC----------GCCAAATTGGGGGCC-CTG-------TT--------GATA-------GTCGAGTAACGTAC-----C--ATGTAAAGA-------TAAGCAAAC-TTCGCTCGTG---------------ATGATAAG-TTT---AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--C---AGAATCGTGTCCATAC-CTTTGTAAgt
gi|3 : AACGGGCAAGGACACCAT---TT-CTCATCGATTGAAAT------GACAGTTTAACTTATTCTA------TT-TTATG--AACA----------------AAG-AGTGGAATA-A--ACATATTT----------------------TTCAGCACACAGAAAA-A--ACCCGGC----TCCCC--------AAA----TC-G-----------TGT---TTGTCGA----CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTC--TAAA-----T--AG--T-A------TAAT---GTCAG-A--AGCAC----T-C-AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG---------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTT----------------------TT---CATA-TAATACCA-TTATTTGTGT----------------GA--ACTTCA-----------TGT---GT-CC-AA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTC--T------------A--A-A------T-ACTGTATTGA-A--AGCAT----T-C-AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-ATGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACT----GA-----------------TCA----------C-AGGGT-----TT--------A--A-------GCC-----ATGT-----------TTTGAAAA-------T----GAAC-------------------------------AATTT-----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----
gi|5 : TTTT------TCGTTATAGAGA----------------TAAAG-AGTGGATTATG--AAATAATT----------------------TT--ACAGA-GGATAT-ACTACAT-GTATT-TACAA--------GAA--AATCTGGCTACCAAAATTGT---TTGTC-AA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGC--T--AAGATGT--AC--ATG------T-AT---GTCTA-A--ATCGT----T-CTAGAAGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-ATTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACT----GAAG--CC----------GTCA----------gg
gi|6 : ttgaaaatgacaTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-ATTT-TCATTG-TAAA-------AA---CTCT--TTTCTCC----GAAGAGCC----------GTCAACTTTGGCGCC-ATG-------TT--------G--ATAGCCGAGTC-----TCGTAA-----C--ATGTAAAGA-------T----AAAC-ATGGATCGTGCCTTA--CT------ATGAAAAT-----------GTTTC-AAATAC------ATTT-TGGC-GTCAG-TTacg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C-AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-ATTT-G-GTTC-TAAG-------G----TTTT--TTT-ACT----GAAG--CCAAAAACTTTTGACA----------CCATG-------TT--------G--ATGGTCAAGTC-----ATGTAAACATGT--GTGCAAACAAAGGTAAC----AAAC-AGGGCTCGGGTCCT----T--GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACATTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAG--CC----------GTCAACTTTGGCGCC-ATG-------TTGATAGTCCG--A-------GTC-----TCGTAAG----C--ATGTAAAGA-------T----AAACATGGGATCGTGC--TA--TT------------ACTATG---AAATGTTTC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT---TT-CTGACGAAT-GAAATTA-----AGAGTTT----------T------TTGTTATAGAAAAATG-A---CATTATATCAAT-AA---GTTA-ATGAAGTATTT----------------------TT-----CA-AGG-AT-A-TACTTGGTATT-TACAT--------TAA--G-TTTG-----------TGT---TT-TC-AA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTC--T--A-----C--AATCA-AACAAATT-AC----TCTA-A--GGCAC----T-T-TACAATG--------GT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|15 ): AAAGACTGAAAAGTTTTGCAGTGAAAGCTTTTTTTCAGCGAAGCTATAAAGTTTGGCGTTTGATAACTGAGTCTCTTATCATGTAA
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 555555 333333333 2222222 1 666666666666666666666666 1111 111 22222222 33333333333333333333333333333333333333333 111 1111111 55555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 44444444444444444444444444 222222222222222 1111111 22222222 111111111 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 3 000000 000000000 1111111 0 1 666666666666666666666666 22 0000 222 4 1 55555555 0 1 99999999999999999999999999999999999999999 000 2 0000000 1 5 1 55 77 44444444444444444444444444444444444444444444444444444444444444 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 77 5 11111111111111111111111111 2 222222222222222 1 8888888 66 0 3 5 88888888 222222222 8 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . ...... ......... ....... . . ........................ .. .... ... . . ........ . . ......................................... ... . ....... . . . .. .. .............................................................. . .... ... . . . .... . . ... . ............ .. .... . .. . .......................... . ............... . ....... .. . . . ........ ......... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 3 777777 000000000 7777777 8 0 888888888888888888888888 00 1111 000 4 0 66666666 8 4 99999999999999999999999999999999999999999 222 2 6666666 6 7 4 99 99 00000000000000000000000000000000000000000000000000000000000000 7 4444 555 9 6 8 2222 4 4 999 4 555555555555 11 5555 7 99 7 22222222222222222222222222 6 999999999999999 0 6666666 00 2 4 0 22222222 222222222 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATT-----GACAGTT-GGCTT-TTTTT-------TGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTC--TA--AAA--AG------TAC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATCA----ATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCC--AT-G-------TT--------GA-------GTCNCGTAA-----C--GT-----GTAAACA-------TAAAC-AGGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG----GACAGTTTGGCTTTTTTTT-------TGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATCCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTC--TA--NAA--AA------TAC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATCA----ATTTAAGGAGCAAGCACAAAGAAGAANGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCC--AT-G-------TT--------GA-------GTCACGTGA-----C--GT-----GTAAANA-------TAAAC-NGGGCTCGTGCC-TTG--TT--GAAAATGAAANTTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTTGGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCAA--AA------TAC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATCA----ATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA--------------AT-G-------TT--------GA-------GTCACATGA-----C--AT-----GTAAACA-------TAGAC-TGTGCTCATGCC-TTGTTTT--GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATC---AAAATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAAT--AT-GGTAATAGTT--------GA-------GTTATGTGA-----C--AG-----GTAAACA-------TAA---GGGACTCGTGCT-TGGGTTT--GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataT-------TATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA---A--AAA--AA------AAC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATCA----ATTNA
gi|13 : T--------GA-------GTCACTGGA-----CTCGT-----GTAAACA-------TAGAC-AGGACTCGTGCC-TTG--TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : A-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGTTTGATAA-------CT--------GA-------GTCTCTTAT-----C--AT-----GTAAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : -------TATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTG--TA--AAA--AG------TAT------GTT---------AT----TAC--GACATAG--------ATTA-TTGCTTAATTT----ATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCC--CT-G-------TT--------GATA-----GTCGAGTAA-----C--GTACCATGTAAAGA-------TAAGC-AAACTTCG---C-TCG--T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--C---AGAATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT------GACAGTTTAACTTATTCTA-------TTTTATG--AACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC-TCCCCA-----A---ATC-G-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTC--TA--AAT--AG------TATAAT---GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAATA--TCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTC--TA--AAT--AC------TGT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATCA----ACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : AC-AGGGTTTAAGCC-ATG--TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcTTTTT-------CGTTATAGAG------------------ATAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TAC-ATGTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGC--TA--AGA--TG------TACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACCA----ATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : ttgaaaatgacaTAAATTA----ATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCC--AT-G-------TTGATAGCC-GA-------GTCTCGTAA-----C--AT-----GTAAAGA-------TAAAC-ATGGATCGTGCC-TTA--CT------ATGAAAAT-----------GTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATCA----ATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACC--AT-G-------TT--------GATGGTCAAGTCATGTAAACATGT--GT-----GCAAACAAAGGTAACAAAC-AGGGCTCGGGTC-CT----T--GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATTA----ATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCC--AT-G-------TTGATAGTCCGA-------GTCTCGTAAG----C--AT-----GTAAAGA-------TAAACATGGGATCGTGCTATTA--CT------ATGAAAT------------GTTTC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATT-----AAGAG---------TTTTT-------TGTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTC--TA--CAATCAAACAAATTAC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 5555555555555555 222222222 77777777777777777777777777 1111 111 22222222 111 1111 333333333333333333333333333 111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 44444444444444444444444444 222222222222222 1111111 22222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 8888888888888888 666666666 6 11111111111111111111111111 22 0000 222 4 1 55555555 3 0 2 222 4444 333333333333333333333333333 000 2 0000000 1 5 1 55 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 77 5 11111111111111111111111111 1 222222222222222 0 8888888 5 0 3 5 88888888 22 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ................ ......... . .......................... .. .... ... . . ........ . . . ... .... ........................... ... . ....... . . . .. ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . .. . .......................... . ............... . ....... . . . . ........ .. .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 0000000000000000 777777777 7 00000000000000000000000000 00 1111 000 4 0 66666666 4 8 4 222 7777 666666666666666666666666666 222 2 6666666 6 7 4 99 7777777777777777777777777777777777777777777777777777777777777777777777 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 7 99 7 22222222222222222222222222 0 999999999999999 7 6666666 0 2 4 0 22222222 11 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGCTTTTTTT---------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCC--AT-G-------TT--------GAT------GTCNCGTAA-----C--GT-----GTAAACA-------TAAACA-GGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTTGGCTTTTTTTT---------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCC--AT-G-------TT--------GA-------GTCNCGTAA-----C--GT-----GTAAACA-------TAAACA-GGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTTGGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA--------------AT-G-------TT--------GA-------GTCACATGA-----C--AT-----GTAAACA-------TAGACT-GTGCTCATGCC-TTGTTTT--GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATCAA---AATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAAT--AT-GGTAATAGTT--------GA-------GTTATGTGA-----C--AG-----GTAAACA-------TAAG---GGACTCGTGCT-TGGGTTT--GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTT---------ATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : T--------GA-------GTCACTGGA-----CTCGT-----GTAAACA-------TAGACA-GGACTCGTGCC-TTG--TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : A-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGTTTGATAA-------CT--------GA-------GTCTCTTAT-----C--AT-----GTAAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : T---------ATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTGT------A-A-------AAAGT---AT------GTT---------AT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCC--CT-G-------TT--------GATA-----GTCGAGTAA-----C--GTACCATGTAAAGA-------TAAGCA-AACTTCG---C-TCG--T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--CAG---AATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAACTTATTCT---------ATTTTATGAACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-ATG--TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA--------TTTTTC---------GTTATAGAGA------------------TAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCC--AT-G-------TT--------GATAGCCGAGTCTCGTAA-----C--AT-----GTAAAGA-------TAAACA-TGGATCGTGCC-TTA--CT------ATGAAA-----------ATGTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACC--AT-G-------TT--------GATGGTCAAGTCATGTAAACATGT--GT-----GCAAACAAAGGTAACAAACA-GGGCTCGGGTC-CT----T--GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCC--AT-G-------TTGATAGTCCGA-------GTCTCGTAAG----C--AT-----GTAAAGA-------TAAACATGGGATCGTGCTATTA--CT------ATGAAATGTT------------TC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAG-------TTTTTT---------GTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 5555555555555555 2222222222 77777777777777777777777777 1111 111 22222222 111 1111 333333333333333333333333333 111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 1111111 666666666666666 222222222222 1111111 22222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 2222222222222222 9999999999 6 11111111111111111111111111 22 0000 222 4 1 55555555 3 0 2 222 4444 333333333333333333333333333 000 2 0000000 1 5 1 55 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 3 8888888 888888888888888 1 222222222222 0 8888888 5 0 3 5 88888888 22 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ................ .......... . .......................... .. .... ... . . ........ . . . ... .... ........................... ... . ....... . . . .. ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . . ....... ............... . ............ . ....... . . . . ........ .. .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 8888888888888888 2222222222 7 00000000000000000000000000 00 1111 000 4 0 66666666 4 8 4 222 7777 666666666666666666666666666 222 2 6666666 6 7 4 99 9999999999999999999999999999999999999999999999999999999999999999999999 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 7 0 6666666 666666666666666 0 000000000000 7 6666666 0 2 4 0 22222222 11 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GG-TTTTTTT----------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATG-------TTGATA------G------TCNCGTAA-----CG-----TGTAAACA-------TAAACA-GGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGCTTTTTTT----------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATG-------TTGAT-------G------TCNCGTAA-----CG-----TGTAAACA-------TAAACA-GGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTT-GGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA------------ATG-------TTGA--------G------TCACATGA-----CA-----TGTAAACA-------TAGACT-GTGCTCATGCC-TTGTTTT--GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATCAA---AATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAATATGGTAATAGTTGA--------G------TTATGTGA-----CA-----GGTAAACA-------TAAG---GGACTCGTGCT-TGGGTTT--GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTT----------ATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : -----CG-----TGTAAACA-------TAGACA-GGACTCGTGCC-TTG--TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : tgagtcactggactA-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGT-----------TTGATAACTGA-G------TCTCTTAT-----CA-----TGTAAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : T----------ATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTGT------A-A-------AAAGT---AT------GT---------TAT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCCCTG-------TTGATA------G------TCGAGTAA-----CGTACCATGTAAAGA-------TAAGCA-AACTTCG---C-TCG--T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--CAG---AATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAACTTATTCT----------ATTTTATGAACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-ATG--TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA--------TTTTTC----------GTTATAGAGA------------------TAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCCATG-------TTGATAGCCGA-G------TCTCGTAA-----CA-----TGTAAAGA-------TAAACA-TGGATCGTGCC-TTA--CT------ATGAAA-----------ATGTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACCATG-------TTGAT-------GGTCAAGTCATGTAAACATGTG-----TGCAAACAAAGGTAACAAACA-GGGCTCGGGTC-CT----T--GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCCATG-------TTGATAGTCCGAG------TCTCGTAAG----CA-----TGTAAAGA-------TAAACATGGGATCGTGCTATTA--CT------ATGAAATGTT------------TC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAG-------TTTTTT----------GTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 8888888888888888888888888888 77777777777777777777777777 1111 111 22222222 111 1111 333333333333333333333333333 111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 555555 222222222222 11111 1111111 22222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 3333333333333333333333333333 6 11111111111111111111111111 22 0000 222 4 1 55555555 3 0 2 222 4444 333333333333333333333333333 000 2 0000000 1 5 1 55 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 3 999999 1 222222222222 22222 0 8888888 5 0 3 5 88888888 22 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ............................ . .......................... .. .... ... . . ........ . . . ... .... ........................... ... . ....... . . . .. ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . . ...... . ............ ..... . ....... . . . . ........ .. .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 2222222222222222222222222222 7 00000000000000000000000000 00 1111 000 4 0 66666666 4 8 4 222 7777 666666666666666666666666666 222 2 6666666 6 7 4 99 7777777777777777777777777777777777777777777777777777777777777777777777 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 7 0 333333 0 000000000000 55555 7 6666666 0 2 4 0 22222222 11 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGC----TTTT-----TTTGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGCC--AGTCNCGTAA-----CG-----TG-----TAAACA-------TAAACA-GGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTTGG------TTTT-----TTTGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGAT------AGTCNCGTAA-----CG-----TG-----TAAACA-------TAAACA-GGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTTGGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA------------ATGTTG--------AGTCACATGA-----CA-----TG-----TAAACA-------TAGACT-GTGCTCATGCC-TTGTTTT--GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATCAA---AATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAATATGGTAAT------AGTTGAGTTA-----TG-----TGACAGGTAAACA-------TAAG---GGACTCGTGCT-TGGGTTT--GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTTATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : -----CG-----TG-----TAAACA-------TAGACA-GGACTCGTGCC-TTG--TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : tgagtcactggactA-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGT----TTGATAACTG-AGTCTCTTAT-----CA-----TG-----TAAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : TATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTGT------A-A-------AAAGT---AT------GTT---------AT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCCCTGTTGAT------AGTCGAGTAA-----CGTACCATG-----TAAAGA-------TAAGCA-AACTTCG---C-TCG--T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--CAG---AATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAAC----TTAT-----TCTATTTTATGAACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-ATG--TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA------------TTT-----TTCGTTATAGAGA------------------TAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCCATGTTGATAGCCG-AGTCTCGTAA-----CA-----TG-----TAAAGA-------TAAACA-TGGATCGTGCC-TTA--CT------ATGAAA-----------ATGTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACCATGTTGATGGTCA-AGTCATGTAAACATGTG-----TG-----CAAACAAAGGTAACAAACA-GGGCTCGGGTC-CT----T--GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCCATGTTGATAGTCCGAGTCTCGTAAG----CA-----TG-----TAAAGA-------TAAACATGGGATCGTGCTATTA--CT------ATGAAATGTT------------TC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAG-----------TTT-----TTTGTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 5555555555555555 2222222222 77777777777777777777777777 1111 111 22222222 111 1111 333333333333333333333333333 111 111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 333333 11111 1111111 22222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 2222222222222222 9999999999 6 11111111111111111111111111 22 0000 222 4 1 55555555 3 0 2 222 4444 333333333333333333333333333 000 2 888 555555 1 0 5 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 2 5 44 111111 1 77777 2 0 8888888 5 0 3 5 88888888 22 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ................ .......... . .......................... .. .... ... . . ........ . . . ... .... ........................... ... . ... ...... . . . ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . . .. ...... . ..... . . ....... . . . . ........ .. .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 8888888888888888 2222222222 7 00000000000000000000000000 00 1111 000 4 0 66666666 4 8 4 222 7777 666666666666666666666666666 222 2 888 444444 4 1 7 9999999999999999999999999999999999999999999999999999999999999999999999 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 5 7 33 777777 0 55555 0 7 6666666 0 2 4 0 22222222 11 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GG-TTTTTTT----------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---CAT---A-GCCAGGAAACCACGCGCGGAGGCGAGAAC-ACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGTCG-A-GTCNCGTAA-----CATGTAAACA-------TAAACA-GGGCTCGTGCC-TTG--TTT-GAAAATGAAAAGTTT----AGACGTCTCAAA-TAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGCTTTTTTT----------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---CAT---A-GCCAGGAAACCACGCGCGGAGGCGAGAAC-ACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGCC--A-GTCNCGTAA-----CGTGTAAACA-------TAAACA-GGGCTCGTGCC-TTG--TT--GAAAATGAAAAGTTT----AGACGTCTCAAA-TAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTT-GGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TTA----CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCAA------------TGTTGA---------GTCACATGA-----CATGTAAACA-------TAGACT-GTGCTCATGCC-TTG--TTTTGAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATC---AAAATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAATATGGTAATAGTTG-A-GTTATGTGA-----CAGGTAAACA-------TAAG---GGACTCGTGCT-TGGGTTT--GAAAATGAAACTTTT----AAACGTTTCAAA-TAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTT----------ATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---CAT---A-GCCACGAAACCACACACGGAAGCGAGAAC-ACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : -----CGTGTAAACA-------TAGACA-GGACTCGTGCC-TTG--TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : tgagtcactggactA-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---CAa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGT----TTGATAACTG-A-GTCTCTTAT-----CATGTAAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : T----------ATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAACAA---ACGCTTGAAAACCACGTGCGGAGGTGAGAAC-ACCAAGATTTGT------A-A-------AAAGT---AT------GT---------TAT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCCCTGTTGATAGTCG-A-GTAACGTAC-----CATGTAAAGA-------TAAGCA-AACTTCG---C-TCG--T------GATGATAAGTTT----AGATGTCTTAAA-TAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--C---AGAATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAACTTATTCT----------ATTTTATGAACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---CAT---T-GCCAGGAAACCACGCGTGGAGGCAAGAGC-ATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTCAAA-TAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---CAT---A-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-ATG--TTTTGAAAATGAACAATTT----AGATGTCTCCAA-CAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA--------TTTTTC----------GTTATAGAGA------------------TAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---CAG---A-GCCAGGAAATCACGTGCGGAGGTCAGAAG-ACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCCATGTTGATAGCCG-A-GTCTCGTAA-----CATGTAAAGA-------TAAACA-TGGATCGTGCC-TTA--CT------ATGAAA-----------ATGTTTCAAA-TAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACCATGTTGATGGTC--AAGTCATGTAAACATGTGTGCAAACAAAGGTAACAAACA-GGGCTCGGGTC-CT----T--GAAAACCAAAAGTTT----AGATGTCTCTAA-TACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCCATGTTGATAGTCCGA-GTCTCGTAAG----CATGTAAAGA-------TAAACATGGGATCGTGCTATTA--CT------ATGAAATGTT------------TCAAA-TAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAG-------TTTTTT----------GTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAAC-ACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 8888888888888888888888888888 77777777777777777777777777 1111 111 22222222 111 1111 333333333333333333333333333 111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 1 1111 1111111 2222222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 3333333333333333333333333333 6 11111111111111111111111111 22 0000 222 4 1 55555555 3 0 2 222 4444 333333333333333333333333333 000 2 0000000 1 5 1 55 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 3 5 1 0 0000 0 8888888 5 0 3 1111111111 2 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ............................ . .......................... .. .... ... . . ........ . . . ... .... ........................... ... . ....... . . . .. ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . . . . . .... . ....... . . . .......... . .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 2222222222222222222222222222 7 00000000000000000000000000 00 1111 000 4 0 66666666 4 8 4 222 7777 666666666666666666666666666 222 2 6666666 6 7 4 99 7777777777777777777777777777777777777777777777777777777777777777777777 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 7 0 7 0 0 6666 7 6666666 0 2 4 4444444444 9 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGC----TTTT-----TTTGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTTGG------TTTT-----TTTGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTTGGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA------------ATGTT--------GAGTCACATGA-CATGT----AAACA-------TAGACT-GTGCTCATGCC-T-TGTTTT-GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATC---AAAATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAATATGGTAATAGT-TGAGTTATGTGA-CAGGT----AAACA-------TAA--G-GGACTCGTGCT-TGGG-TTT-GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTTATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : -CGTGT----AAACA-------TAGACA-GGACTCGTGCC-T-TG-TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : tgagtcactggactA-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGT----TTGATAAC-TGAGTCTCTTAT-CATGT----AAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : TATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTGT------A-A-------AAAGT---AT------GTT---------AT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCCCTGTTGATAGT-CGAGTAACGTAC-CATGT----AAAGA-------TAAGCA-AACTTCG---C-T-CG-T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--C---AGAATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAAC----TTAT-----TCTATTTTATGAACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-A-TG-TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA------------TTT-----TTCGTTATAGAGA------------------TAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCCATGTTGATAGC-CGAGTCTCGTAA-CATGT----AAAGA-------TAAACA-TGGATCGTGCC-T-TA-CT------ATGAAAA-----------TGTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACCATGTTGATGGT-CAAGTCATGTAAACATGTGTGCAAACAAAGGTAACAAACA-GGGCTCGGGTC-C-T----T-GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCCATGTTGATAGTCCGAGTCTCGTAAGCATGT----AAAGA-------TAAACATGGGATCGTGCTAT-TA-CT------ATGAAATGTT------------TC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAG-----------TTT-----TTTGTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 5555555555555555 2222222222 77777777777777777777777777 1111 111 22222222 111 1111 333333333333333333333333333 111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 1 1111 1111111 2222222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 2222222222222222 9999999999 6 11111111111111111111111111 22 0000 222 4 1 55555555 3 0 2 222 4444 333333333333333333333333333 000 2 0000000 1 5 1 55 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 3 5 1 0 0000 0 8888888 5 0 3 1111111111 2 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ................ .......... . .......................... .. .... ... . . ........ . . . ... .... ........................... ... . ....... . . . .. ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . . . . . .... . ....... . . . .......... . .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 8888888888888888 2222222222 7 00000000000000000000000000 00 1111 000 4 0 66666666 4 8 4 222 7777 666666666666666666666666666 222 2 6666666 6 7 4 99 7777777777777777777777777777777777777777777777777777777777777777777777 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 7 0 7 0 0 6666 7 6666666 0 2 4 4444444444 9 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GG-TTTTTTT----------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGCTTTTTTT----------GTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTT-GGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA------------ATGTT--------GAGTCACATGA-CATGT----AAACA-------TAGACT-GTGCTCATGCC-T-TGTTTT-GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATCAA---AATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAATATGGTAATAGT-TGAGTTATGTGA-CAGGT----AAACA-------TAA--G-GGACTCGTGCT-TGGG-TTT-GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTT----------ATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : -CGTGT----AAACA-------TAGACA-GGACTCGTGCC-T-TG-TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : tgagtcactggactA-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGT----TTGATAAC-TGAGTCTCTTAT-CATGT----AAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : T----------ATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTGT------A-A-------AAAGT---AT------GTT---------AT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCCCTGTTGATAGT-CGAGTAACGTAC-CATGT----AAAGA-------TAAGCA-AACTTCG---C-T-CG-T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--CAG---AATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAACTTATTCT----------ATTTTATGAACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-A-TG-TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA--------TTTTTC----------GTTATAGAGA------------------TAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCCATGTTGATAGC-CGAGTCTCGTAA-CATGT----AAAGA-------TAAACA-TGGATCGTGCC-T-TA-CT------ATGAAAA-----------TGTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACCATGTTGATGGT-CAAGTCATGTAAACATGTGTGCAAACAAAGGTAACAAACA-GGGCTCGGGTC-C-T----T-GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCCATGTTGATAGTCCGAGTCTCGTAAGCATGT----AAAGA-------TAAACATGGGATCGTGCTAT-TA-CT------ATGAAATGTT------------TC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAG-------TTTTTT----------GTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 8888888888888888888888888888 77777777777777777777777777 1111 111 22222222 111 1111 333333333333333333333333333 111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 1 1111 1111111 2222222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 3333333333333333333333333333 6 11111111111111111111111111 22 0000 222 4 1 55555555 3 0 2 222 4444 333333333333333333333333333 000 2 0000000 1 5 1 55 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 3 5 1 0 0000 0 8888888 5 0 3 1111111111 2 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ............................ . .......................... .. .... ... . . ........ . . . ... .... ........................... ... . ....... . . . .. ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . . . . . .... . ....... . . . .......... . .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 2222222222222222222222222222 7 00000000000000000000000000 00 1111 000 4 0 66666666 4 8 4 222 7777 666666666666666666666666666 222 2 6666666 6 7 4 99 7777777777777777777777777777777777777777777777777777777777777777777777 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 7 0 7 0 0 6666 7 6666666 0 2 4 4444444444 9 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGC----TTTT-----TTTGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTTGG------TTTT-----TTTGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTTGGGTTTTTTTTTGTTTGTTTGTTATAGAAATAC---A-AATCTT-TTACAAAGGAGCGGATTA-A--AAATATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA------------ATGTT--------GAGTCACATGA-CATGT----AAACA-------TAGACT-GTGCTCATGCC-T-TGTTTT-GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATC---AAAATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAATATGGTAATAGT-TGAGTTATGTGA-CAGGT----AAACA-------TAA--G-GGACTCGTGCT-TGGG-TTT-GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTTATTATA--AACACAAAG-A-TCTT-TTATAAAT-TTTT--TTA-C-----TATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : -CGTGT----AAACA-------TAGACA-GGACTCGTGCC-T-TG-TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : tgagtcactggactA-AGATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : attttgatataaacaaactaagtggattaAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGT----TTGATAAC-TGAGTCTCTTAT-CATGT----AAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : TATTATGTAAACAC---CCA-TCTTCT-ATA--------GATTT-A--AAATATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : TCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTGT------A-A-------AAAGT---AT------GTT---------AT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCCCTGTTGATAGT-CGAGTAACGTAC-CATGT----AAAGA-------TAAGCA-AACTTCG---C-T-CG-T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--C---AGAATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAAC----TTAT-----TCTATTTTATGAACA------------------AAG-AGTGGAATA-A--ACATATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAATATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-A-TG-TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA------------TTT-----TTCGTTATAGAGA------------------TAAAG-AGTGGATTATG--AAATAATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCCATGTTGATAGC-CGAGTCTCGTAA-CATGT----AAAGA-------TAAACA-TGGATCGTGCC-T-TA-CT------ATGAAAA-----------TGTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACCATGTTGATGGT-CAAGTCATGTAAACATGTGTGCAAACAAAGGTAACAAACA-GGGCTCGGGTC-C-T----T-GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCCATGTTGATAGTCCGAGTCTCGTAAGCATGT----AAAGA-------TAAACATGGGATCGTGCTAT-TA-CT------ATGAAATGTT------------TC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAG-----------TTT-----TTTGTTATAGAAAAAT---G-A-CATTAT-ATCAA----TAAGTTA-ATGAAGTATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-T-TAA---GTTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
blockSeqs : A . C C . T T ACAGTTTAACTTAT T CACAAAGATCTTTTATAAATTT GG ATG CAG C T CGGTGGT T C GTG CGAA GCTACCAAAATTGTTTGTCAA CCG T AAAC T C C A AAATACTGTATTGAAAGCATTCAACATTTTGACATAC T AGGG TAT A A A GCAG C G GT C TGTTTTGA GA GAAG T T C A A GTGC AAGGTAA T T TGGGTTT T . C . TGTTAC A A G TT A T T T G T T ATGT T TTACT TAATT G C ATTTTTTTGCAATAA T
blockSeqs : T G . . T AGAGTTT T AATGACATTATATCAA GG TG A . T CCAT T T TA A GCTCTCAAAAC C A C A . T A AAGATGTACATGTATGTCTAAATCGTTCTAGAAGTC . . TAG A A C ACTG . . TC . AGCTT . AG . C . T G . . . T TTGTTTA G . T . . A . . G A T A T . A . . T A . A C CCAG .
blockSeqs : . . ACATTT G CACCCATCTTCTATA AA C A . T TACT C T CA C CGCGCATTTCA G T C T . C G AAAAAAAACCAACACTATCACCATTTTGACATAT . . CAA C A A ACA . . T . AGC . . . C . A . . . . A ATGTTTT G . C . . C . . A A T G T . G . . T T . T . CGC .
blockSeqs : G CAAAGAG T A A . C TAT T C CA A TGTTTGTCGA C T C T . T A AAATAGTATAATGTCAGAAGCACTCAACATTTC . . AAG T A G ACT . . G . AAC . . . C . T . . . . T ATTACT G . T . . C . . C A G C . . G . . C T . A
blockSeqs : . TAAAGAG G A A . A CA G T AG G TGTGTCCAA T C C G . T A AAAAAGTATGTTATTACGACATAG . . AA A T A CT . . C . AA . . . C . A . . . . G TTACT A . T . . T . . T . . . . . T A .
blockSeqs : A . . T AA T T A . TGTTTTCAA C C C . . T . . . C A T A A . . T . A . . . . . T . . . . T TCGT G . T . . C . . T . . C C
blockSeqs : . . T T G . T . TG . . . . . . . . . G . G . . . . . . CTT G . . . . T . .
blockSeqs : . . C . . . . . . T . A . . . . . . . . .
blockSeqs : G
blockSeqCons : CAAAGAG******************* CAT***** TGTTTTCAA****************** C****** A* AC** ****
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGC----TTTT-----TTTGTTATAGAAACAC---G-A-TCTT-T-ATAAAG-AGTGGATTA-A--AAATATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGC----TTTT-----TTTGTTATAGAAACAAAGAG-------------------TGGATTA-A--AAATATTTTT--ACACA-AGATACAT-----ACTTTGTATTTACA-TAAAA---ATTCGTGTTTTCAA------------------CAC--GCTTGTC------ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-C---AAAATCGTGTCCATGC-CCCTTTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA
Alignments
lowQualScore : 1 2222 1 22222 4444444 2222222222 444444444444444444444444444444444 222222222 111 22222222 1111 333333333333333333333333333 111 1111111 5555555555555555555555555555555555555555555555555555555555555555555555 3333 333333333333 1111 1 1111 1111111 2222222222 111111 1111 11111 11111 5555555555555555 1
lowQualScore : 1 5 3 3 8888 0 0 3 55555 2 1111111 9999999999 1 444444444444444444444444444444444 8888 0 000000000 222 4 1 55555555 3 0 2 99 8888 222222222222222222222222222 000 2 0000000 1 5 1 55 2222222222222222222222222222222222222222222222222222222222222222222222 5 9999 555 1 3 2 3333 4 4 666 4 000000000000 66 7777 5 3 5 1 0 0000 0 8888888 5 0 3 1111111111 2 9999 7 4 222222 1 4 4 66 7 1 1 3 8 7 5 2222 00 1 22222 66666 1 2 4444444444444444 0
lowQualScore : . . . . .... . . . ..... . ....... .......... . ................................. .... . ......... ... . . ........ . . . .. .... ........................... ... . ....... . . . .. ...................................................................... . .... ... . . . .... . . ... . ............ .. .... . . . . . .... . ....... . . . .......... . .... . . ...... . . . .. . . . . . . . .... .. . ..... ..... . . ................ .
lowQualScore : 0 0 7 7 3333 7 0 2 00000 5 5555555 2222222222 0 777777777777777777777777777777777 0000 1 000000000 333 4 0 66666666 4 8 4 88 9999 111111111111111111111111111 222 2 6666666 6 7 4 99 7777777777777777777777777777777777777777777777777777777777777777777777 7 4444 555 9 6 1 2222 4 4 999 4 555555555555 11 5555 7 0 7 0 0 6666 7 6666666 0 2 4 4444444444 9 4444 2 4 888888 9 4 4 00 3 5 0 8 0 8 7 1111 99 4 77777 77777 0 5 5555555555555555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GG-TTTTTTT----------GTTATAGAAA-------------CAAA--G-A----------GTGGATTA-A--AAAT---------ATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGC---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
Reference ( family-919 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGTATNCTCGAACGGGCATGGACACGAT----TTCTGATCGAT-GAAATTG-----ACAGTT-GGCTTTTTTT----------GTTATAGAAA-------------CAAA--G-A----------GTGGATTA-A--AAAT---------ATTTTT--ACACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---ATTCG-----------TGT---TT-TCAA---CAC--GCTTGT---C---ATA-GCCAGGAAACCACGCGCGGAGGCGAGAA-CACCAAGATTTCT------A-A-------AAAGT---AC------GTCGA-A--AGCAC----T-C--GACATTT--------GTTA-ATGATAAATC----AATTTAAGGAGCAAGCACAAAGAAGAAAGAAC--GAAA-A-TTT-T-GTTG-TAAA-------A----CTCT--TTTCACCGAAG----CCGTCAACTTT-GGCGCCATGTTGATAGT-CGAGTCNCGTAA-CATGT----AAACA-------TAAACA-GGGCTCGTGCC-T-TG-TTT-GAAAATGAAAAGTTT----AGACGTCTC-AAATAC------ATCT-TTGC-GTCAG-TTTTTGAAATTTAGGTTTGTTGNTATGTTT-TACACGAATC-A----AATACTATCACG----TTATTAATCAA-----ATNTCA-------CG-CAA---AATCGTGTCCATGC-CCCTTTAA
gi|1 : TTCAGTATTTTCAAAGGGGCATGGACACAATCAATTTTTGATCAAT-GAAATTGTCTTGACAGTT-GGGTTTTTTTTTGTTTGTTTGTTATAGAAATACAAATCTTTTACAAA--GGA----------GCGGATTA-A--AAAT---------ATCTTT--AAACA-AGATAC-A----TACTTTGTATTTACA-TAAAA---GTTTG-----------TTC---TT-TT-A---CAT--GCTTGT---CATTATA-GCCAGGAAACCACACACGGAAGTGAGAATTAACGAGATTTCTTTATTCA-A-------AA--T---AC------GTCAA-A--AGCAG----T-C--AACAGTT--------GTTC-ATGAAAAATC----AATTTTAGTAACAAGCTCAAGGAAGAATGA----GAAA-A-TTT-T-GTTA-CAAA-------A----TTTT--TCTCACTGAAG----CCGTCA------------ATGTT--------GAGTCACATGA-CATGT----AAACA-------TAGACT-GTGCTCATGCC-T-TGTTTT-GAAAATGAGAATTTTTTTAAAATGTCTCAAAATAC------ACCT-TTGT-ATTAG-TTTTTGAAATTT--GTTCGTTGCTATGCTT-TACACAACTC-A----AATACTATCATG----TTATCAATTAA-----ATTTCA-------CATCAA---AATCGTGCTCATGC-CCCTTTAA
gi|10 : atttgctaacaatgcatccttgctttAGA-------A----CGTT--TCTCACCGAAG----CCTTCAGCTTT-TGCAATATGGTAATAGT-TGAGTTATGTGA-CAGGT----AAACA-------TAA--G-GGACTCGTGCT-TGGG-TTT-GAAAATGAAACTTTT----AAACGTTTC-AAATAT------ATAT-TTGC-G
gi|10 : gtacattatttatatcACACTAATC-A----AATG-TA--ATG----ATATCAATTAA-----ATGT-A-------CG-C-----AATCGATTCTCTGCTCCCTTTaatataacactaatcaaatgtaatgatatcaattaaatgtacgcaatcgattctctgctcccttt
gi|11 : gtacattatttatatcagaacgtttctcaccgaagccttcagcttttgcaatatggtaatagttgagttatgtgacaggtaaacataagggactcgtgcttgggtttgaaaatgaaacttttaaacgtttcaaatatatatttgcgaatataTT----------ATTATAAACA-------------CAAA--G-A-----------TCTTTTA-T--AAATTTTTTTACTATTTTT--ACACA-AGATA-------TAATTTGTATCTACA-TAAAA-----TCG-----------TG---------------A-----TTGT---C---ATA-GCCACGAAACCACACACGGAAGCGAGAA-CACCAAGATTTA-------A-A-------AAAAA---AC--------CAACACTATCACCATTT-T--GACATAT--------GTTA-ATGATAAATC----AATTNA
gi|13 : -CGTGT----AAACA-------TAGACA-GGACTCGTGCC-T-TG-TTTAGAAAATGACAAGTTT----AGA--TCT-----TAC--------------T-GTCAG-GCGTTGTAATTTAGGTTTGTCGTTATGTTTGTATACAAATCTAATGTAATGCTATCATA----TTATgt
gi|14 : tgagtcactggactTTTT----------G--ATATAAA-------------CAAACTA-A----------GTGGATTA-A--A---------------------------GATGC-A------CTTTGTATTTACA--AAAA---ATTCG------------GC---TC-TCAAAACCAC--GTTTGT---C---Aa
gi|15 : aAAAGACT--GAAA-AGTTT-T-GCAG-TGAA-------AGC--TTTT--TTTCAGCGAAG----CTATAAAGTTT-GGCGT----TTGATAAC-TGAGTCTCTTAT-CATGT----AAacacactgtcatt
gi|17 : -A----AATCCTATCATA----TCATTGATCAA-----ATATCAATTTTTTTG-CAATAAAATTGTGTCCATGT-CCCCTTAA
gi|2 : TAGATTT-A--AAAT---------ATTTCC--ACACA-AGATAC-------ACTTCGTCTTTACA-CAAAA---gt
gi|2 : tattatgtaaacacccatcttctaTCTTT--ACACA-AAACAC-GGTGGTATTCTACATCTAGAGTGAGACGAATGCG-----------CGCGCATT-TCA----TAG--GACTGTAAAC---AAACGCTTGAAAACCACGTGCGGAGGTGAGAA-CACCAAGATTTGT------A-A-------AAAGT---AT------GTT---------AT----TAC--GACATAG--------ATTA-TTGCTTAATT----TATCTATAGA-CACACACAAAGAAGAACTAA----AAA-A-TTT-G-GTTG-TAAA-------G----CTCT--TTTCTCCAAAG----CCGCCAAATTG-GGGGCCCTGTTGATAGT-CGAGTAACGTAC-CATGT----AAAGA-------TAAGCA-AACTTCG---C-T-CG-T------GATGATAAGTTT----AGATGTCTT-AAATAC------ATAT-TTGC-GTCAG-ATTTTAACATTT-------TTAAAGTG-TT-CATAC--ATC-A----AATACTGCCACATTACTTATTAATTAGTAATTATTTCA-------C--CAG---AATCGTGTCCATAC-CTTTGTAAcacggtggtattctacatctagagtgagacgaatgcgcgcgcatttcataggactgtaaacaaacgcttgaaaaccacgtgcggaggtgagaacaccaagatttgtaaaaagtatgttattacgacatagattattgcttaatttatctatagacacacacaaagaagaactaaaaaatttggttgtaaagctcttttctccaaagccgccaaattgggggccctgttgatagtcgagtaacgtaccatgtaaagataagcaaacttcgctcgtgatgataagtttagatgtcttaaatacatatttgcgtcagattttaacatttttaaagtgttcatacatcaaatactgccacattacttattaattagtaattatttcaccagaatcgtgtccatacctttgtaaagt
gi|3 : tattatgtaaacacccatcttctatagatttaaaatatttccacacaagatacacttcgAACGGGCAAGGACACCAT----TTCTCATCGATTGAAAT-G-----ACAGTTTAACTTATTCT----------ATTTTATGAA-------------CAAA--G-A----------GTGGAATA-A--ACAT---------ATTTTTCAGCACACAGAAAA-A-----ACCCGGC---TCCC-CAAA------TCG-----------TGT---TTGTCGA---CAC--GTTTGT---C---ATT-GCCAGGAAACCACGCGTGGAGGCAAGAG-CATCATGATTTCT------A-A-------ATAGTATAAT------GTCAG-A--AGCAC----T-C--AACATTTC-------GTCATACAAT--ATCAGGGAACTC---GAGCAAATACAAATAGG----------------TTT-C-GTTG-TAAA-------A----agt
gi|3 : tATTAAAAGTTT----AGACATCTC-AAATAC------ACCT-CTGT-ATCAG-CTTGTGGAATTTAGGTTTGTgcagtcgagtcgaataacacgataggtgattaaaagtttagacatctcaaatacacctctgtatcagcttgtggaatttaggtttgt
gi|4 : taacgggcaaggacaccatttctcatcgattgaaatgacagtttaacttattctattttatgaacaaagagtggaataaacatatttttcagcacacagaaaaaacccggctccccaaatcgtgtttgtcgacacgtttgtcattgccaggaaaccacgcgtggaggcaagagcatcatgatttctaaatagtataatgtcagaagcactcaacatttcgtcatacaatatcagggaactcgagcaaatacaaataggtttcgttgtaaaagcagtcgagtcgaataacacgataggtg-A--AAAT---------ATTTTT---CATA-TAATACCA----TTATTTGTGT--------GAA---CTTCA-----------TGT---GT-CCAA---CAT--GTTTGT---C---ATA-GTCAGGAAACCACGTTTGGAGGTGAAG------AAGACTTCT------A-A-------ATACT---GT------ATTGA-A--AGCAT----T-C--AACATTTTGACATACACTA-ATGATAAATC----AACTTAGGGAGCACGCCCAATTAAGAAAGAGCAGGAAA-A-TGT-T-GCTG-TAAA-------AGCTTTTCT--TTTCACTGA
gi|4 : ACA-GGGTTTAAGCC-A-TG-TTTTGAAAATGAACAATTT----AGATGTCTC-CAACAC------ATCTATTGC-G--AGTTTTTTCAAATTTAGGCTTGTTGGTATGTTT-TACATGAACC-A----TACACTAT-ATG----ATTTTGACCAA-----tcacagggtttaagccatgttttgaaaatgaacaatttagatgtctccaacacatctattgcgagttttttcaaatttaggcttgttggtatgttttacatgaaccatacactatatgattttgaccaagg
gi|5 : aaaatatttttcatataataccattatttgtgtgaacttcatgtgtccaacatgtttgtcatagtcaggaaaccacgtttggaggtgaagaagacttctaaatactgtattgaaagcattcaacattttgacatacactaatgataaatcaacttagggagcacgcccaattaagaaagagcaggaaaatgttgctgtaaaagcttttcttttcactgatcT-GAAAATG-----ACA--------TTTTTC----------GTTATAGAGA-------------TAAA--G-A----------GTGGATTATG--AAAT---------AATTTT--ACAGA-GGATAT-AC---TACAT-GTATTTACA-AGAAA---ATCTGGCTACCAAAATTGT---TTGTCAA---CAC--GCATGT---C---AGA-GCCAGGAAATCACGTGCGGAGGTCAGAA-GACCAATTTTGCT------A-A-------GATGT---ACATGTATGTCTA-A--ATCGT----T-CTAGA-AGTC--------GTTA-ATGATAAACC----AATTCAAGGAGGAAGCTAAAAGAAGAAGGGACA-GAAA-A-TTTGT-GTTT-CAAATGTTTTGA----TTTTGATTTCACTGAAG----CCGTCAACgg
gi|6 : tTAAATT----AATTAAGAAAGCAAGCACAAAGAAGTAAGAACT-GAAC-A-TTT-TCATTG-TAAA-------AA---CTCT--TTTCTCCGAAGAG--CCGTCAACTTT-GGCGCCATGTTGATAGC-CGAGTCTCGTAA-CATGT----AAAGA-------TAAACA-TGGATCGTGCC-T-TA-CT------ATGAAAA-----------TGTTTC-AAATAC------ATTT-TGGC-GTCAG-TTg
gi|7 : tccagaccataacaatctttgtaaaccactacacgtgcgaaggtgataatattcgccaataaaattttacatttccatgcacgtatattatttcCAT----T-C--AACATTTTGAAATAGGTTA-ATGATAAATC----AATTTA
gi|7 : a-A-TTT-G-GTTC-TAAG-------G----TTTT--TTT-ACTGAAG----CCAAAAACTTTTGACACCATGTTGATGGT-CAAGTCATGTAAACATGTGTGCAAACAAAGGTAACAAACA-GGGCTCGGGTC-C-T----T-GAAAACCAAAAGTTT----AGATGTCTC-TAATACTGTTACATCT-TTGT-GTCAG-TTTTTGATATTGAGGTTGGTTGCTGTTTTA-TATATGTATG-A----AAGACTATCACG----CTATTAAACAA-----ATATtttggttctaaggtttttttactgaagccaaaaacttttgacaccatgttgatggtcaagtcatgtaaacatgtgtgcaaacaaaggtaacaaacagggctcgggtccttgaaaaccaaaagtttagatgtctctaatactgttacatctttgtgtcagtttttgatattgaggttggttgctgttttatatatgtatgaaagactatcacgctattaaacaaatattcaagta
gi|8 : acattcaacattttgaaataggttaatgataaatcaatttTAAATT----AATT-AAGAAGCAAGCACAAAGAAGTAAGAACTGGAAACA-TTT-T-CATGCTAAA-------AAC--CTCT--TTTCTCCGAAGGAAGCCGTCAACTTT-GGCGCCATGTTGATAGTCCGAGTCTCGTAAGCATGT----AAAGA-------TAAACATGGGATCGTGCTAT-TA-CT------ATGAAATGTT------------TC-AAATAC------ATTT-TGGCGGTCAtcaagta
gi|9 : aaccataacatcttgtaaaaccactaccactgcgaaggtgataatttcgccaataaaattaccattatccatgcctatattatattcTTCAGTATACT-GAATAGGCATGAACATGAT----TTCTGACGAAT-GAAATTA-----AGAGTT-------TTTT----------GTTATAGAAA--------------AAT--G-ACATTATATCAATAAGTTA-ATGAAGT---------ATTTTT-----CA-AGG-AT-A----TACTTGGTATTTACA-TTAAG----TTTG-----------TGT---TT-TCAA---CACCGGCTTG--------------CAGGAAAACACTTGCGAAGGTTAGAA-CACCAAGACCTCT------ACAATCAAACAAATT---AC-------TCTA-A--GGCAC----T-T--TACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTAATAAAAAACAAATTACTCTAAGGCTCTTATCCAATGGTAAGAAGATAAAAGCAACAGCAAAATACAATTGGACGAAGCTATATGTAATTAACAAAATGGCATAAGATCTAATGCGCTACAATCATACATGTAATTGATTTGTAAAAGGTTTTTT
Unaligned ( gi|16 ): AAAGTCTTCCAACATATATATCGCAAGCATTTAACGTTTTGACATTGGCTAATGAGAACTCCATTAGGGTACATGTACAAAA