lowQualScore : 11111111111111111111111111111111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 7777 888888888888 1 4 444444 11 333 111 1 3333333333333 2 11 66666666 22 555555555555555 222222 00000000000000000000000000000000000000000000000000000 333 7777 1 1 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111 33333 2222 1111 333333 222 6666666666666666666666 2222 33333333 111 1 444444444 11 1 11 1 33 11 1 1 111 1 8888888888888888888 1 11 1 33333333 1 1 22222 777777777777777777 1111 1 666666666
lowQualScore : 6666 666666666666 7 0 222222 88 333 666 5 7777777777777 0 00 88888888 77 222222222222222 222222 77777777777777777777777777777777777777777777777777777 666 0 4444 3 2 6 6 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33333 3 99999 4444 4444 666666 2 000 5555555555555555555555 3 5555 7 99999999 2 777 2 2 111111111 33 3 0 88 3 66 66 3 3 666 7 5 9999999999999999999 3 88 3 88888888 0 0 22222 555555555555555555 2 3 66 3 9999 0 777777777
lowQualScore : .... ............ . . ...... .. ... ... . ............. . .. ........ .. ............... ...... ..................................................... ... . .... . . . . . ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..... . ..... .... .... ...... . ... ...................... . .... . ........ . ... . . ......... .. . . .. . .. .. . . ... . . ................... . .. . ........ . . ..... .................. . . .. . .... . .........
lowQualScore : 0000 000000000000 0 0 000000 00 555 555 0 0000000000000 0 00 00000000 55 000000000000000 000000 88888888888888888888888888888888888888888888888888888 777 7 3333 3 3 0 7 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00000 8 88888 2222 8888 222222 5 888 2222222222222222222222 2 0000 0 55555555 5 555 2 8 000000000 88 5 2 88 3 77 00 3 3 777 3 0 3333333333333333333 3 33 3 33333333 0 0 55555 222222222222222222 5 5 22 5 5555 0 777777777
consensus : ATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTTCATCAAAAAGGNTGATCATTGATTGACGACNAAATAATTTACAGNGGGCNGTNGCTCTATTGTTAGCTGATTTTCTNTGNANACTGTTCACTTCCAGTGCTG-TTGAACC-TGA-AGACTCATTTNA---TGGG-CAGCCT--TAT-GATAT--TATTTT--CAGATGCGCAATTT---GGTTTTC-GACCCGGGTTAGG-ACTACGGAGGCAATATTTGCTTT-AC-ATT-TCTTA-T-ACAACAATC-ACTCCAATTCCAAAAAA-----------------A-CGTTTATATTGTTGTTTTCGTN-GATTTATAAGAAAGCA-TTTGANCTC--CAGTTGATA-GNGNAA---AAATTGTA-C--AG-A---AAANT--TAAA-ACTTACGGTAT--CA-AGGNAAACTGCCTAAG-ATTGTT--G--CCA-TGTAT---AGTANAG-ANTA-GAA-T--TGTGTAAAA-AT-CCTCTGNGGNC--------ATACT-T--C-ACGATTTTTT----GAA--A---GTCA-----------TAT------C----G--GGGGA--T------------------GTTG------T---CTC-CCNTACTT-TTTGCG--TTGTATGTNTAAT-GAC--TTTGAAA-AT--GAATTCT--A--TCA-AAA----A-TGN-TAATCG-ACCAA--C-TGATT-T---AC-AGC----GTTATAAGT-C-TTT-TATATCTTGAT-G-TAT-GC-TT---A-TGA---CAT----GGTGNTGCTT-GCAGA----A-T-CAG--T-TACA-T-----GA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAA--AACT-TN--ATACAGATGAAATGGGG--------NT----TAATTGTG-A--ATG-T---GN--AAAAACC-AAAATTGTT-AT-TTTTAGAAATGGTGGGAC-AACTTC--GCACAG-AT-GAGAAATGGGAATATATAANG---G---GGAN-A--TTATAGAAGT-A--TTAGATC-A--TA--TGTT---TACTTNGGNCGTTTTA-TTT--AANTTCAATTGGT-AAATT--TTCG-TAACGCAG-AAG-CA-G-TTAGCAT-AC---AA--NCG-------C-AAAG-CGTT--ATT-TGC-C--T-TNAATC-AACAA-TA----AAGCAACCG-TATTTAAA-CGTCG--TACCTNATTTTCNCT---TTTTGATA-CTTATGT------TTTGTAGTATT
Reference ( gi|3 ) : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTA-T-GATC-CTAA-TAATT-ACAAAAG--AATAA-TCT--TATTAGTTG--TTTCTG-GCAAA-TGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CAGCCTCTTATAGAT-T--TATTT---CAGATGCGCAATTTTTTGGTTTTC-AACCCAAGTTAGGTACTACGGAGGCCATATTTGCTTT-AC-ATTGTCTTA-T-ACAACAATCCACTCCAATTCCAAAAAAACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTGTT-GATTTATAAGAGAGC--TTTG-CCTTTACAGTTAATA-GCGGAA---AAATTGT--C--AG-A---AAATT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTTTCATTCCA-TGTAT---AGTATAGGATTA-GAACT--TGTGTTAAA-ATGCCTCTGGGGCC--------ATATT-T--C-ACCATTTTTT----GAA--A---ACCA-----------TAT------C----G--G------T------------------GTTG------T---CTC-CTGTATTT-TTTGTA--TTGTATGTTTAAT-GAC--TT-GAAA-A---GAATTC---A--TCA-AAA----A-TGT-CAATCA-ACCAA--C-TGATT-T---ACTAGT----GTTATAAGT-C-TTT-TA-ATCTTGAT-G-TAT-GT-T----A-TGA---CAT----GGTGCTGCTT-GCAGA----CCT-CAG--T-TAC--T-----GA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAA--AACT-TA--ATACAGATGAAATGGGG--------GT----TAGTTGTG-AC-ATG-T---GC--AAAGACC-AAAATTGTT-GTATTTTAGAAATGGTGGGA--AACTTT--GCACAGTAC-AAGAAATGGGAA-ATATAAGG---G---GGAA-A--TT-TAGAAGT-A--TTAGATC-A--TA--TGTT---TATTTGGGGAGCTTTATTTT--AATTTCAATTGGT-AAATT--TTTAGTAACGCAG-AAG-CA-G-TTAGCATCAC---AA--TCG-------C-AAAG-CGTT--ATT-TGCCC--T-TAAATC-AACAA-TA----AAGCAACTG-TATTTAAATCATTGC-TACCTTATTTTCACC---TTTTGATA-CTTATCT------TTTGTAGTATT
gi|2 : ATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTG-TTGATCACTAAATAATTTACAGTAGGCAGTAGCTCT--TATTAGTTGATTTTCTCTGCAT--TGTTTACTTCCA-TACTG----AACC--GA-AGACTCATTTCA---TGG--CAGCCT--TAT-GATAT--TATTTT--CAGATGCGCAATTTA--GGTTTTC-AACCCA-GTTAGG-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTA-TTACAGCAATC-ACTC-AAT--CAAAAAA-------------------CGTTACTATTGTTGTATTTGTTTGATT-ATAAGAAAGCATTTTGATCT---CAGTTGATATGGGAAA---AAATTGTAAC--AGGA---AAAGT--TAAA-ACTTACGTGATA-CA-AGGAAAGCTGT--ACG-ATTGTTCAGTTCCAATGTAT---AGTAGAT-ATTA-GAA-T--TGT-TGAAAGATCCCTCTGGG--C--------A-ATT-T--CCACGATTTTTTTTTGGCA--A---ACCA-----------CAT------C----G--G------TCTTATTACAAAGGAGAAGGTTG------T---CTCACCCTATTT-TT-GTA--TTGTATGTATAAT-GAC--CT-GAAA-A---TGATTC------TCA-AGA----A-TGG-TAATCA-ACCAAG-C-TGATT-T---ACT-GT----GT--TAAGT-CTTTT-TT-ATCTTGAT-GTTAT-GC-TTTTGA-TGA---CAT----GGT-CTGCTT-GCAGAATATTCTGCAA--T-TACAAT-----GATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTA--AA-T-TG--ATACAGTTTGAAT-TGG--------GC----TATTTCT-----ATGTT---GA--AAA---C-ACAATTA--------TTAGAAATGGTGGG---AACTTTCCGCACAG-AC-GAGAAATGGGAATATATA--G---G---GGAA-ACTTT-TAG-AGT-GATTTAGATCAA--TT--TGTT---TATTTGGG--ATTTTA-TTT--AATTTCAA-TGGTGAAATTTCTTTGGTAACGCAGTAAGACA-G-TTAGCAT-AC----A--CCGAGGTCTCC-AAAGTCGTTTAATTCTGCCCGTT-TAAATC-AACAATTA----AAGCAACTG-TATTTAAA-CATTG--TA-CTTATTTCCTCT---TTTTGATA-CTTA-GT------TTAGTAGTTTT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAAT-GACG-TAAA-TAATT-ACAGAGG--TATT--TCTATTGTTAGCTG--TTT-TG-GGAAACTATTCAC---CAGTGCT--TTGAA---TAACAGA---ATTTTAGAGTGGGACAA------GGAGAA-CACTATTTTGACAGATGCACAGTTT----GTTTTCCGACCAGGGTTATCAACAGTTGATGCAATATTTGT-------ATT------------ACAATC---TTTAATTT--AGAAAACTCTG---AAAAAAACA-CGTTTATATTGTTGTTTT-GTA-GATTT-TCAAAAAGCG-TTTG-ACTCTA---TTAATA--TGTAT---AAATTAT------G-GTTTAAATTGTTGAATGTTT---GTATT-CA-AGGGAAACTGCTTAAA-GTTGT------CCA-GGCTT---TGTACAGCAGTGTGAAATGCTGTGCAAAATATGG---TGGGGCTTTAAGCGAATACT-T--A-AGCAAT--------GAA--ATGGGTCT-----------TATGCAGGAC----GAAG------T------------------GTTA------T---CAC-CATTACTT-TTTGCT--CTTTATGTC-AAT-AAT--TTTGAGA-T---AAATTTT--A--TCC-GGA----A-----CAATTG-TCCAT--C-T-ATT-G---A---------ATTACAA-------T-TA-ATC--AAC-A-TAT-TT-TT---A-TGAATGTAT----GCTGATGATT-ATA--------T-CAGAGT-CA---------GG-GTTA----CAAAG-CAT-GT--TA-AGTACTC--TATAT--AGCTATT--CTACTGAT----TGAGA--------TT----TAATAGTA-A--ATG-T---GCC-AAAAACC-AAGGTTGTT-AT-TTTTGGAAATGGTGGAAC-AATTTT--GGAAAATGT-A--AAAT-GGAT-ATACAACAACCA---GTAT-A--TT---GAAGT-T--GTAAA-C-A--CA--T-TTAAGTACTTAGGAATGTT--GTTT--AACTTTAA-TGGA-AAATTAATCCA--AACGCAA-AAA-CATG-TT-GCAGAAC---AAGGGCG-------G-AAGG-CACT--TTT-TGC--------AATC-TCCAA-TACTTTGAGAAATCATTATTTTAAT-GTTGA-AACACAATGTTCAAT---TTTTGATA-CTTAT
gi|11 : A-AGACTCATTTAA---TGGG-TAGCCTCCTAT-GATAT--TATTT---CAGATGTACAATTT---AATTTTC-AACCCAAGTTAGGTACTACGGGGGCAATATTTGCTTT-AC-CTT-TCTTATT-ACAA-AAT-AACTCCAA-TCCAAAAA------------------AACGTTTATATTGTTG-TTTCGTT-GA-TTATAAGAAAGCA-TTTG-ACT---CAGTTAACA-GAGG-A---AAACTGTA-C--AG-A---Agtacatacatgtaatattctttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|6 : TTATATTGTTGTTTC-ATA-GATTT-TAAGAAAGTA-TTTGACCCT----GTTGATA-G----ATTTAAATTAT--GGAAA-A---AAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTA-CTAAGCATTATT-CGGGTTA-TGTATCAAAACAT-GAAATA-----T--TGTGTTAAA------TCTGCAGAT--------ATGCTGT--C-AGAATTTTGT----AGA--A---GTAAGGTAGGACTTTTAC------A----G--GGAGATGT------------------GTTGCATGTAT---CTC-CCATACTT-TTTTCG--TTATATGTG-AAC-GAT--TTTGAAGTA---GAATTT------TTA-AAGCGTGA-TGT-TGTTCC-ATTA---C---ATT-T---ACGAGA----ATTA-AA---C-TTG-TATGTACTGAT-G-TAT-GCAG----A-TGA---TAT----GGTCATTTTT-GCTGA--------AAG--TATACA-T-----GA-ACTT----CAAAA-AAA-GT--TA-GAT--------GAATTATAT-GA--ATGCACAAGTAACTGGG--------ATCTTACAGTT----ACTAT--T---GA--TAAAACA-AAAATAGCT-AT-TTTCAGGAATGGAGGTA--AA
gi|5 : ATAA-AAACT--TGTGTAAAA-AT-CCTCTGT--TC--------ATATT-GGGC-ACAATTTTT-----GAACGG---ATC------------TAT------TACAAG--GAGAAGTT------------------GTTG------TATCCCC-CTGT-TTT-TTTGTA--TTGTAT---TAATTGGCCTTT-GGAA-ATGTGAATTA---A--TCA-AAA----AATGT--AATCA-ACAAAACC-TGATT-TTAGAC-AGT----ATTAT--GT-C-CTG-TATATCT-GATTG-TAT-GC-TG---A-TGA---CAT----G-TGCTGCTT-GCAGA----A-T-CAG--T-TAC--T-----TA--TTA----CAAAAATAT-TTCGTA-GATACGCGCTGCAA--AATT-TTTTATACAAATGAA-TGGGG--------TT----TAATTGTG-A--ATG-TTTGGTTTAAAAACTTAAAACCGTTCGTTATTTAGAAATAGTGAGGCCAACTTG--CCACAG-ATGAAGAAATGGAAATATATAGAG---GACAGGACCA--TTAGAGAAGTTA--TTAAACC-A--AAGTTGTT---TACTTTGGTTGTTTTTTTTTTTAAATTCAAT-GGT-AATTT--TTTGTTAACACAG-AAG-CA-GTTTAGCATCACACAAG--TTG-------CAAAAG-CGTT--ATT-TGCAC--TCTTAATCAAACAA-TA----TAGCAATTG--A-TTAAA-CAACACGTACCTGA--TTCACCTTTTTTTCATACCTTACATTGTATGTTTGTAGTATTataaaaaatgtagaaaaatgg
gi|7 : TACTTATTTGTGAGTTGT-TGTT-AAT-C-C--CT-GAAA-ATTCAAATTCTATACTTCAGAAA----A-TGGATAATCAGACCAA--CCTGATTAT---ACAAGCCCTGGTTA-AAGTTC-TTTGTA-ATCTTGAT-C-TATAGC-T----AATGA---CATTTTGGATGTTGTTTTGCAGA----A-T-CAG--T-TAC--TGTACTGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--T-GAA--AACT-T---ATACAGATGAACGGGGGGGGGGGTTGT----TAATTGTGAAT-AT--T---GC--AAAAACT-AAAATTGTT-ATA-TTTAGAAATGATGGAA--AGCTTC--ACACAA-AT-GAGAAATGGG-A-ATATAAGG---G---GG---G--TTATAGAAAT-A--TTAGATC-AACT---TGTT---TACTT-GGGCGTTTTA-TTT--AA-TTAAATTGt
gi|7 : --T-TGAAGC-AACAA-TA----AAGCAACTG-TA----------------CCTTATTGTCCCT---TTTTGATA-CTTAT-G------TTTGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|9 ): AACATACGTGGCGATTCTATCTGAGACTCCCTCAGGGTTATAAACTTAAGTATGACAAGCACTCTGTAATTATTTTCATGAGAAGTGTACCTAAAACCAAGGTCGTTAATTCTAGAAATAGTGAAAAGATTTCGAAAAATGAGATGTGAATGTACAACAATAAGTGCCTTGTAGCTGTAAATACATTTAAGAATTTAGGAATGTTATTTAGCCATAATGGA
Unaligned ( gi|10 ): AACATACGTGGCGATTCTATCTGAGACTCCCTCAGGGTTATAAAATTAAGTATGACAAGCACTCTGTAATTATTTTCATGAAAGTGTACCTAAAACAAGGTTGTTAATTCTAGAAATAGTGAAAGATTTCGAAAAATGAGATGTGAATGTACAACAATAAGTGCCTTGTAGCTGTAAATACATTTAAGAATTTAGGAATGTTATTTAGCCATAATGGA
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|14 ): GATGTTGTCAGTGAATGTAATTATCTGGGTGTACTGTTTTATTACAACGGAAAATTCCGTAAAACCCAGAAACATGCTACAGAACAAGGGAGAGAAGCGTTATGTTCGATTTCTGAACATTCTTTTCATGCAGAAACACAATTT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 22 22 1 1 1 111 444444444 2 4444444444444 2 333333333 222222 33333333 111 11 11 22 1 111 222 222 1 1 2 222 111 2222 1 777777777777777777 1 11 33333333 111111 2222222222 11 1 33 1 11 1 77777777777777 111 11 11 33333333333 111111 3333333333333333333333333333333333333333333333333333333333333333333333333 111111 11 111 2222222 2222222 1111 11 11 11 111 3333333333333333333 222222 1111 222222222 333333333 1111 1111111 111 22222222222 222222222 33333333333 1111 22 2222222 11111 11 1111 2222 111 11 111 11 11 3333333 1 1 1 1 666666666666666666666 1 11 1 1 3333333 1111 1 3333333333 222222222
lowQualScore : 111 4 2 22 77 4 5 5 5 0 6 333 1 6 6 222222222 1 3 11 9999999999999 0 0 3 333333333 0 7 777777 22222222 2 1 777 22 33 2 77 0 3 3 777 777 0 2 2 2 444 2 0 0 0 111 8 555 6 7777 0 333333333333333333 0 6 99 0 11 3 8 00000000 111111 8 8888888888 1 33 0 33 33 0 1 99 3 0 99999999999999 777 7 1 00 1 77 8 11 1 55555555555 0 5555 0 777777 8 4 0 2222222222222222222222222222222222222222222222222222222222222222222222222 8 77 3 6 222222 77 000 7 0000000 7777777 6 4444 6 44 33 3 55 6 6 111 7777777777777777777 3 6 6 6 6 111111 4444 3 33 6 222222222 6 444444444 4444 6 6 99 6 2222222 666 666 77777777777 555555555 5 0 5 11111111111 88 5 0000 5 00 99999 4 5 5 5 1 33 1111111 44444 66 0 8888 3 8 7777 444 8 99 8 444 8 11 33 8888888 0 0 0 0 3 000000000000000000000 0 33 0 0 0000000 3 8 8 7777 2 88 0 1 9999999999 1 8 1 8 444444444
lowQualScore : ... . . .. .. . . . . . . ... . . . ......... . . .. ............. . . . ......... . . ...... ........ . . ... .. .. . .. . . . ... ... . . . . ... . . . . ... . ... . .... . .................. . . .. . .. . . ........ ...... . .......... . .. . .. .. . . .. . . .............. ... . . .. . .. . .. . ........... . .... . ...... . . . ......................................................................... . .. . . ...... .. ... . ....... ....... . .... . .. .. . .. . . ... ................... . . . . . ...... .... . .. . ......... . ......... .... . . .. . ....... ... ... ........... ......... . . . ........... .. . .... . .. ..... . . . . . .. ....... ..... .. . .... . . .... ... . .. . ... . .. .. ....... . . . . . ..................... . .. . . ....... . . . .... . .. . . .......... . . . . .........
lowQualScore : 555 0 5 55 55 0 0 5 0 7 7 000 0 7 7 777777777 0 7 77 7777777777777 7 7 7 777777777 7 3 333333 33333333 5 0 555 55 88 5 55 0 2 2 000 555 2 0 0 5 000 5 0 0 0 000 8 888 5 5555 0 888888888888888888 6 4 00 8 44 8 0 66666666 000000 0 6666666666 0 88 0 55 88 0 0 22 0 0 55555555555555 555 0 0 22 0 22 0 00 4 66666666666 8 2222 8 888888 0 6 8 6666666666666666666666666666666666666666666666666666666666666666666666666 0 77 7 7 888888 22 222 3 7777777 8888888 7 2222 7 22 00 5 88 7 7 777 2222222222222222222 0 7 7 7 7 000000 2222 7 55 7 555555555 7 222222222 2222 7 7 22 7 7777777 888 777 88888888888 222222222 0 4 0 44444444444 44 0 9999 0 00 77777 3 7 7 0 4 99 2222222 66666 44 8 2222 8 0 2222 000 8 22 0 000 8 44 88 5555555 0 0 0 0 2 222222222222222222222 0 88 0 0 3333333 8 0 0 0000 8 88 6 0 4444444444 0 0 0 0 666666666
consensus : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTA-TTGAT--CTAAATAATT-ACAGAAG--AGTANCTCT--TATTAGTTG-TTTTCT--GCAAA-TGTTTACTTCCA-TGCTGTTGAA--CCTAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCAGGTTAG-GTACTACGGAGGCAATATTTGCTTT-AC-ATTGTCTTA-T-ACAGCAATC-ACTCCAATTCCAAAAAA-AC------------------GTTTATATTGTTGTTTTCGTT-GATTTATAAGAAAGCATTT-GACCTC--CAGTTAATA-GNGNAAAAAT-TGTA-CAG-A---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTTCGGG--C----CA-TGTAT---AGTATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--C-A-CAATTTTTT----GAAA---G--TCA-----------TAT-CG---G--------------GA-GAAG-TGT--------TGTCTC-CCN-TACTT-TTT-GTA--TTGTATGT-TAAT--GACTTTGAAAAT--G--AATTCTAT----CA-AA----AA-TGN-TAATC-AACCAA--C-TGATT-T---AC-A-GC----GTTA--TAAGTCTTTTATA-TCTTGAT-GT-AT-GCTN---ATGACAT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTACA----AAA-TATG-T--TA-GATACGC--TGGAAAACT-TT--ATACAGATG-------AA-TGGGG--------TTTAATTGTGA-ATG-T---GC--A---AAAACC-AAAATTGTT-AT-T-TTTAGAAATGGTG-GGA-AACTT--CGCACAG-ACGA-GAAATGGGAATATACAAGG---G---GGAN-A-TTATAGAAGT-A--TTAGATC-ATA-TTGTT---TACTTGGGG-GTTTTA-TTT---AATTTCAATTGGTAAATT--TTC----GT-AACGCAG-AAG-CA-G-TTAGCATC--ACAAG-TCG-------C-AAAG-CGTT--ATT-TG-C-C---T-TAAATC-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
Reference ( family-917 ) : ATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTTCATCAAAAAGGNTGATCATTGATTGACGACNAAATAATTTACAGNGGGCNGTNGCTCTATTGTTAGCTGATTTTCTNTGNANACTGTTCACTTCCAGTGCTGTTGAA--CCTGA-AGACTCATTTNA---TGGG-CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCGACCCGGGTTAG-G-ACTACGGAGGCAATATTTGCTTT-AC-ATT-TCTTA-T-ACAACAATC-ACTCCAATTCCAAAAAA-AC------------------GTTTATATTGTTGTTTTCGTN-GATTTATAAGAAAGCATTT-GANCTC--CAGTTGATA-GNGNAAAAAT-TGTA-CAG-A---AAANT--TAAA-ACTTACGGTAT--CA-AGGNAAACTGCCTAAG-ATTGTT---G--C----CA-TGTAT---AGTANAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATACT-T--C-A-CGATTTTTT----GAAA---G--TCA-----------TAT-CG---G--------------GG-GA---TGT--------TGTCTC-CCN-TACTT-TTT-GCG--TTGTATGTNTAAT--GACTTTGAAAAT--G--AATTCTAT----CA-AA----AA-TGN-TAATC-GACCAA--C-TGATT-T---AC-A-GC----GTTA--TAAGTCTTTTATA-TCTTGAT-GT-AT-GCTT---ATGACAT----GGTGNTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTACA----AAA-TATG-T--TA-GATACGC--TGGAAAACT-TN--ATACAGATG-------AAATGGGG--------NTTAATTGTGA-ATG-T---GN--A---AAAACC-AAAATTGTT-AT-T-TTTAGAAATGGTG-GGACAACTT--CGCACAG-ATGA-GAAATGGGAATATATAANG---G---GGAN-A-TTATAGAAGT-A--TTAGATC-ATA--TGTT---TACTTNGGNCGTTTTA-TTT---AANTTCAATTGGTAAATT--TTC----GT-AACGCAG-AAG-CA-G-TTAGCAT---ACAA--NCG-------C-AAAG-CGTT--ATT-TG-C-C---T-TNAATC-AACAA-TA----AAGCAACCG-TATTTAAA-CG--TCG-TACCTNATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAAT-GACG--TAAATAATT-ACAGAGG----TATTTCTATTGTTAGCTG-TTTTG---GGAAACTATTCAC---CAGTGCT-TTGAA----TAACAGA---ATTTTAGAGTGGGACAAGG------AG-AACACTATTTTGACAGATGCACAGTTT---GTTTTCCGACCAGGGTTATCA-ACAGTTGATGCAATATTTGTATT-AC-AAT-CTTTAAT-TTAGAAA---ACTCTGA----AAAAAACAC------------------GTTTATATTGTTGTTTT-GTA-GATTT-TCAAAAAGCGTTT-GA-CTC--TA-TTAATA--TGTATAAAT-TAT----G-GTTTAAATTGTTGAATGTTT---GTATT-CA-AGGGAAACTGCTTAAA-GTTGTCCAGG--C----TT-TGTAC---AG--CAG-TGTGAAA-TGCTGTGCAAAATAT-GGTGGGGCTTTAAGCGAATACT-T--A-AGCAAT---------GAAATGGG--TCT-----------TATGCA---G--------------GACGAAG-TGT--------TATCAC-CAT-TACTT-TTT-GCT--CTTTATGTC-AAT--AATTTTGAGA-T--A--AATTTTAT----CC-GG----AA-CAA-TTGTC-CATCTA--T-TGAAT-T---AC-A-A------TTAATCAA------CATA-TTTTTAT-GA-AT-G--T---ATG-C-T----GATGATTATA-TCAGA-GT------CAG------------G-GTTACA----AAG-CATG-T--TA-AGTACTC--TATATAGCTATT--CTACTGAT-----------TGAGA--------TTTAATAGTAA-ATG-T---GCC-A---AAAACC-AAGGTTGTT-AT-T-TTTGGAAATGGTG-GAACAATTT--TGGA-AA-ATGT-AAAATGG--ATATACAACAACCA---GTAT-A-TT---GAAGT-T--GTAAA-C-ACA--T-TTAAGTACTTAGGA-ATGTTG-TTT---AACTTTAA-TGGAAAATTAATCC----A--AACGCAA-AAA-CATG-TT-GCAGA--ACAAGGGCG-------G-AAGG-CACT--TTT-TG-C---------AATC-TCCAA-TACTTTGAGAAATCATTATTTTAA-TG--TTGAAACACAATGT-TCAATTTTTGATA-CTTA---TGT---
gi|10 : TGA-AAG-T---GT--ACCTAAAAC--AAGGTTGTT-AA-T-TCTAGAAATAGTG-AAA-GATTT--CG-AAAA-ATGA-G--ATGTGAATGTACAAacatacatgtaatattctttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|11 : aacatacgtggcgattctatctgagactccctcagggttataaaattaagtatgacaagcactctgtaattattttcaA-AGACTCATTTAA---TGGG-TA--GCCTCCTAT-GATATTA-TTT--CAGATGTACAATTT---AATTTTCAACCCAAGTTAG-GTACTACGGGGGCAATATTTGCTTT-AC-CTT-TCTTATT-ACAA-AATA-ACTCCAA-TCCAAAAAA-AC------------------GTTTATATTGTTG-TTTCGTT-GA-TTATAAGAAAGCATTT-GA-CT---CAGTTAACA-GAGG-AAAAC-TGTA-CAG-A---Acaataagtgccttgtagctgtaaatacatttaagaatttaggaatgttatttagccataatgga
gi|2 : ATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTG-TTGATCACTAAATAATTTACAGTAGGCAGTAGCTCT--TATTAGTTGATTTTCTCTGCAT--TGTTTACTTCCA----TACTGAA--CC-GA-AGACTCATTTCA---TGG--CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTTA--GGTTTTCAACCCAG-TTAG-G-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTA-TTACAGCAATC-ACTC-AATC---AAAAA-AC------------------GTTACTATTGTTGTATTTGTTTGATT-ATAAGAAAGCATTTTGATCTC---AGTTGATATGGGAAAAAAT-TGTAACAGGA---AAAGT--TAAA-ACTTACGTGATA-CA-AGGAAAGCTG--TACG-ATTGTTCA-GTTC----CAATGTAT---AGTAGAT-ATTAGAA-T--TGTTGAAAG-AT-C------C-CTCTGGGCA-ATT-T--CCA-CGATTTTTTTTTGGCAA---A--CCA-----------CAT-CG---GTCTTATTACAAAGGAG-AA---GGT--------TGTCTCACCC-TA-TT-TTT-GTA--TTGTATGTATAAT--GACCT-GAAAAT--G--A-TTCT------CA-AG----AA-TGG-TAATC-AACCAAG-C-TGATT-T---AC-T-GT----GTTA----AGTCTTTTTTA-TCTTGAT-GTTAT-GCTTTTGATGACAT----GGT-CTGCTT-GCAGA-ATATTCTGCAAT-TAC---AATGATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTAAA-T-TG--ATACAGTTT-------GAATTGGG--------CT--ATT-TCT-ATG-T---TG--A---AAA--C-ACAATTATT-A--------GAAATGGTG-GG--AACTTTCCGCACAG-ACGA-GAAATGGGAATATATA--G---G---GGAA-ACTTTTAG-AGT-GATTTAGATCAATT--TGTT---TATTTGGGA--TTTTA-TTT---AATTTCAA-TGGTGAAAT--TTCTTTGGT-AACGCAGTAAGACA-G-TTAGCAT---AC-A--CCGAGGTCTCC-AAAGTCGTTTAATTCTG-C-CCGTT-TAAATC-AACAATTA----AAGCAACTG-TATTTAAA-CA--TTG-TA-CTTATTT-CCTCTTTTTGATA-CTTA----GT---TTAGTAGTTTT
gi|3 : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTA--TGAT--CCTAATAATT-ACAAAAG--AATAA-TCT--TATTAGTTG--TTTCTG-GCAAA-TGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CA--GCCTCTTATAGAT-TTATTT---CAGATGCGCAATTTTTTGGTTTTCAACCCAAGTTAG-GTACTACGGAGGCCATATTTGCTTT-AC-ATTGTCTTA-T-ACAACAATCCACTCCAATTCCAAAAAA-ACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTGTT-GATTTATAAGAGAGC-TTT-G-CCTTTACAGTTAATA-GCGGAAAAAT-TGT--CAG-A---AAATT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTT---T--CATTCCA-TGTAT---AGTATAGGATTAGAACT--TGTGTTAAA-ATGC------CTCTGGGGCCATATT-T--C-A-CCATTTTTT----GAAA---A--CCA-----------TAT-CG---G----------------------TGT--------TGTCTC-CTG-TATTT-TTT-GTA--TTGTATGTTTAAT--GACTT-GAAAA---G--AATTC-AT----CA-AA----AA-TGT-CAATC-AACCAA--C-TGATT-T---ACTA-GT----GTTA--TAAGTCTTTTA-A-TCTTGAT-GT-AT-G-TT---ATGACAT----GGTGCTGCTT-GCAGACCT------CAGT-TAC-----TGA-ATTACA----AAA-TATG-T--TA-GATACGC--TGGAAAACT-TA--ATACAGATG-------AAATGGGG--------GTTAGTTGTGACATG-T---GC--A---AAGACC-AAAATTGTT-GTAT-TTTAGAAATGGTG-GGA-AACTT--TGCACAGTACAA-GAAATGGGAA-ATATAAGG---G---GGAA-A-TT-TAGAAGT-A--TTAGATC-ATA--TGTT---TATTTGGGGAGCTTTATTTT---AATTTCAATTGGTAAATT--TTTA---GT-AACGCAG-AAG-CA-G-TTAGCATC--ACAA--TCG-------C-AAAG-CGTT--ATT-TGCC-C---T-TAAATC-AACAA-TA----AAGCAACTG-TATTTAAATCA--TTGCTACCTTATTT-TCACCTTTTGATA-CTTA---TCT---TTTGTAGTATT
gi|5 : -T--TGTGTAAAA-AT-C------CTCTGT--TCATATT-GGGC-A-CAATTTTT-----GAAC---GGATC------------TAT-TACAAG--------------GA-GAAGTTGT--------TGTATC-CCCCTGTTT-TTTTGTA--TTGTAT---TAATTGGCCTTTGGAAAT--GTGAATTA-AT----CA-AA----AAATG--TAATC-AACAAAACC-TGATT-TTAGAC-A-GT----ATTA--T--GTCCTGTATA-TCT-GATTGT-AT-GCTG---ATGACAT----G-TGCTGCTT-GCAGA-AT------CAGT-TAC---T-T---ATTACA----AAAATATT-TCGTA-GATACGCGCTGCAAAATT-TTTTATACAAATG-------AA-TGGGG--------TTTAATTGTGA-ATG-TTTGGTTTA---AAAACTTAAAACCGTTCGT-TATTTAGAAATAGTGAGGCCAACTT--GCCACAG-ATGAAGAAATGGAAATATATAGAG---GACAGGACCA-TTAGAGAAGTTA--TTAAACC-AAAGTTGTT---TACTTTGGTTGTTTTT-TTTTTTAAATTCAAT-GGTAATTT--TTT----GTTAACACAG-AAG-CA-GTTTAGCATCACACAAG-TTG-------CAAAAG-CGTT--ATT-TG-CAC---TCTTAATCAAACAA-TA----TAGCAATTG--A-TTAAA-CAACACG-TACCTGATTCACCTTTTTTTCATACCTTACATTGTATGTTTGTAGTATT
gi|6 : ataaaaacTTATATTGTTG-TTTCATA-GATTT-TAAGAAAGTATTT-GAC--C--CTGTTGATA-GATTTAAATTATGGA--AA-A---AAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTA-CTAAGCATTATTCGGG--T----TA-TGTATCAAAACATGA-AAT---A-T--TGTGTTAAA------------TCTGCAGATATGCTGT--C-A-GAATTTTGT----AGAA---G--TAAGGTAGGACTTTTAC-AG---G--------------GA-GA---TGTGTTGCATGTATCTC-CCA-TACTT-TTT-TCG--TTATATGTG-AAC--GATTTTGAAGTA--G--AATTT--T----TA-AAGCGTGA-TGT-TGTTC-CATT-A--C---ATT-T---ACGA-GA----ATTA---AA--CTTGTATG-TACTGAT-GT-AT-GCAG---ATGATAT----GGTCATTTTT-GCTGA-A--------AGTATAC---A-TGA-ACTTCA----AAA-AAAG-T--TA-GAT--------GAA-----TT--ATATGAATGCACAAGTAACTGGGA--------TCTTACAGTTA-CTA-T---TG--AT--AAAACA-AAAATAGCT-AT-T-TTCAGGAATGGAG-Gt
gi|7 : -TACTTATTT-GTGAGTTGT-TGT-TAAT----CCCTGAAAATTCA--AATTCTATACTTCAGAA----AA-TGGATAATCAGACCAA--CCTGATTAT---AC-AAGCCCTGGTTA---AAGTTCTTTGTAATCTTGAT-CT-ATAGCTA---ATGACATTTTGGATGTTGTTTTGCAGA-AT------CAGT-TACTGTACTGA-ATTACA----AAA-TATG-T--TA-GATACGC--T-GAAAACT-T---ATACAGATG-------AACGGGGGGGGGGGTTGTTAATTGTGA-ATATT---GC--A---AAAACT-AAAATTGTT-AT-A-TTTAGAAATGATG-GAA-AGCTT--CACACAA-ATGA-GAAATGGGA--ATATAAGG---G---GG---G-TTATAGAAAT-A--TTAGATC-A-ACTTGTT---TACTT-GGGCGTTTTA-TTT---AA-TTAAATTGtaaaataaaaaatgtagaaaaatgg
gi|7 : ---T-TGAAGC-AACAA-TA----AAGCAACTG-TA-----------------CCTTATTG-TCCCTTTTTGATA-CTTA---TG----TTTGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
gi|9 : tacttatttgtgagttgttgttaatccctgaaaattcaaattctatacttcagaaaatggataatcagaccaacctgattatacaagccctggttaaagttctttgtaatcttgatctatagctaatgacattttggatgttgttttgcagaatcagttactgtactgaattacaaaatatgttagatacgctgaaaacttatacagatgaacgggggggggggttgttaattgtgaatattgcaaaaactaaaattgttatatttagaaatgatggaaagcttcacacaaatgagaaatgggaatataaggggggttatagaaatattagatcaacttgtttacttgggcgttttatttaattaaaTGAGA-A-G-T---GT--ACCTAAAACC-AAGGTCGTT-AA-T-TCTAGAAATAGTG-AAAAGATTT--CG-AAAA-ATGA-G--ATGTGAATGTACAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|14 ): GATGTTGTCAGTGAATGTAATTATCTGGGTGTACTGTTTTATTACAACGGAAAATTCCGTAAAACCCAGAAACATGCTACAGAACAAGGGAGAGAAGCGTTATGTTCGATTTCTGAACATTCTTTTCATGCAGAAACACAATTT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT
Alignments
lowQualScore : 222 11 11 1 1 1 111 11 1 1111 222 11 1 22 33333 1 111 1 11 11 1 222 222 1 111 2 111 2222 1 777777777777777777 1 1 11 33333 111111 2222222222 11 1 11 1 11 1 1 11 111 2222 11 33333333333 2222 9999999999999999999999999999999999999999999999999 222222 111111 2222222 2222222 1111 11 11 111 44444444444444444444444444 111 111111111 222222222 333333333 1111 11111 111 2222222222 2222222222 33333333333 111111 1111 222222222222 11 11 22222222 22222 1 333333333333 11 1 111 11 222222222222 444444444 22222 1111 1 3333333333 222222222
lowQualScore : 111 1 1 66 88 1 5 5 5 6 333 1 6 6 7 88 3 8888 77 333 00 7 7 7 3 0 22 00000 0 2 0 777 2 0 33 2 55 0 3 999 777 0 0 9 2 111 8 0 8 555 2 7777 0 333333333333333333 0 8888 1 0 0 11 0 88888 111111 8 8888888888 0 33 0 33 99 0 0 99 2 0 0 2 2 33 777 0000 1 77 8 11 1 55555555555 0 5555 0 2222 8 0 9999999999999999999999999999999999999999999999999 8 1 88 333333 8 77 3 6 6 999 888 444444 0000000 7777777 6 4444 6 44 6 3 55 6 6 111 33333333333333333333333333 6 3 777 6 111 1 6 888888888 6 222222222 6 444444444 4444 6 6 99 6 22222 6 666 666 6 5555555555 8888888888 5 0 66 00000000000 88 000000 2222 5 99999 4 5 1 5 5 0 222222222222 66 0 8 11 3 44444444 0 5 66666 77 6 8 1 222222222222 11 8 8 6 8 0 999 11 777777777777 8 99 8 111111111 5 00000 8 8 7777 88 0 1 3333333333 1 8 1 8 444444444
lowQualScore : ... . . .. .. . . . . . ... . . . . .. . .... .. ... .. . . . . . .. ..... . . . ... . . .. . .. . . ... ... . . . . ... . . . ... . .... . .................. . .... . . . .. . ..... ...... . .......... . .. . .. .. . . .. . . . . . .. ... .... . .. . .. . ........... . .... . .... . . ................................................. . . .. ...... . .. . . . ... ... ...... ....... ....... . .... . .. . . .. . . ... .......................... . . ... . ... . . ......... . ......... . ......... .... . . .. . ..... . ... ... . .......... .......... . . .. ........... .. ...... .... . ..... . . . . . . ............ .. . . .. . ........ . . ..... .. . . . ............ .. . . . . . ... .. ............ . .. . ......... . ..... . . .... .. . . .......... . . . . .........
lowQualScore : 555 0 0 00 00 0 0 5 0 7 000 0 7 7 3 33 3 7777 77 333 77 3 7 3 3 7 33 77777 0 5 2 555 5 0 88 5 22 0 2 222 555 2 5 8 5 000 8 0 8 888 5 5555 0 888888888888888888 8 4444 4 6 6 88 8 00000 000000 0 6666666666 8 88 0 55 88 0 2 22 5 0 0 0 5 88 555 2222 0 22 0 00 4 66666666666 8 2222 8 8888 0 8 0000000000000000000000000000000000000000000000000 0 0 88 000000 0 77 7 7 7 555 333 333333 7777777 8888888 7 2222 7 22 7 5 88 7 7 777 00000000000000000000000000 7 2 555 7 777 0 7 888888888 7 555555555 7 222222222 2222 7 7 22 7 55555 7 888 777 7 0000000000 3333333333 0 4 99 88888888888 44 555555 0000 0 77777 3 7 4 7 0 4 000000000000 44 8 0 00 8 44444444 8 2 00000 00 0 0 4 222222222222 00 0 0 0 0 8 666 00 888888888888 0 22 0 000000000 6 00000 0 0 0000 88 6 0 6666666666 0 0 0 0 666666666
consensus : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT-TTGAA--CCTAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCAAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGATTCCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCTC--CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTAT-ACA-AGGGAAGCTGCCTACG-ATTG-TTCAGNCC--ATGTAT---AGCATA-GANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATG-T-TAAT--GACTTTGAAAAT--G--AATTC-AT----CA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACAAGG---G---GGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATG-TTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
Reference ( family-917 ) : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AGTANCTCTTATTAGTTG---TTTTCTGCAAATGTTTACTTCCA-TGCTGTTGAA--CCTAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCAGGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTA-TACAGCAATC-ACTCCAATTCCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCTC--CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTAT-ACA-AGGGAAGCTGCCTACG-ATTG-TTCGGGCC--ATGTAT---AGTATA-GANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATG-T-TAAT--GACTTTGAAAAT--G--AATTCTAT----CA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TNATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACAAGG---G---GGA-NATTATAGAAG-TA--TTAGATCATA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CA-G-TTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAATGAC--GTAAATAA-TTACAGAGG--TATTTCTATTGTTAGCTG---TTTTGGGAAACTATTCAC---CAGTGCT-TTGAA----TAACAGA---ATTTTAGAGTGGGACAAGG------AG-AACACTATTTTGACAGATGCACAGTTT---GTTTTCCGACCAGGGTTATCAACAGTTGATGCAATATTTGTATT-A-CAATCTTTAA-TTTAGAAA---ACTCTGA----AAAAAACAC------------------GTTTATATTGTTGTTTT-G-TAGATTT-TCAAAAAGCG-TTTGAC-TC--TA-TTAATA--TGTATAAAT-TAT-----GGTTTAAATTGTTGAATGTTT---GTAT-TCA-AGGGAAACTGCTTAAA-GTTG-TCCAGGCT--TTGTAC---AGCA---GTGTGAAA-TGCTGTGCAAAATAT-GGTGGGGCTTTAAGCGAATACT-T--AAGCAAT---------GAAATGGG--TCT-----------TATGCA-------------GGACGAAGT-GTTA------TCAC-CAT-TACTT-TTT-GCT--CTTTATG-T-CAAT--AATTTTGAGA-T--A--AATTTTAT----CC-GG----AA-CAA-TTGTCC-ATCTA--T-TGAAT-T---AC-A----------ATTAATCAACATATTTTTATG-----AAT-G-TAT-GC---TGATGATTAT----A--------T--CAGA-GT------CAG------------G-GTTA----CAAAG-CAT-GT--TA-AGTACTC--TATATAGCTATT--CTACTG-AT-----------TGAGA--------T-TTAATAGTAA-ATG--T-G---CCA---AAAAC-CAAGGTTGTT-AT-T-TTTGGAAATGGTGGAAC-A-ATTT--TGGA-AA-ATG-TAAAATGG--ATATACAACAACCA---GTA-TATT---GAAG-TT--GTAAA-CACA-TTTAAG--TACTTAGG--A--ATGTTG-TTTAACTTTAA-TGGAAAATTAATCC----A--AA--CGCAA-AAA-CATG-TT-GCAG--AAC--AAGGGC-GG-A---AGG-CACT--TTT-TG-C----------AAT-----C-TCCAA-TACTTTGAGAAATCATTATTTTAA-TG--TTGAAACACAATGT-TCAATTTTTGATA-CTTA---TGT---
gi|10 : TGA-AAG--T-G---T-ACCTAAAAC--AAGGTTGTT-AA-T-TCTAGAAATAGTGAAA--G-ATTT--CG-AAAA-ATG-AG--ATGTGAATGTACAAacatacatgtaatattctttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|11 : aacatacgtggcgattctatctgagactccctcagggttataaaattaagtatgacaagcactctgtaattattttcaA-AGACTCATTTAA---TGGG-TA--GCCTCCTAT-GATATTATTT---CAGATGTACAATTT---AATTTTCAACCCAAGTTAGGTACTACGGGGGCAATATTTGCTTT-A-CCTT-TCTTATTACAA-AATA-ACTCCAA-TCCAAAAAA-AC------------------GTTTATATTGTTG-TTTCG-TTGA-TTATAAGAAAGCA-TTTGAC--T--CAGTTAACA-GAGG-AAAAC-TGT-ACA-GA---Acaataagtgccttgtagctgtaaatacatttaagaatttaggaatgttatttagccataatgga
gi|14 : TTATCTGGG--T--GTACTG-TTTTATTACAAC-GGAAAATT--C-C----G-TAAAACCCAG-AAA-CATG-CTA-CAG--AAC--AA-G---GG-AGAGAAG-CGTT--AT
gi|2 : gatgttgtcagtgaatgtaaATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTGTTGATCACTAAATAATTTACAGTAGGCAGTAGCTCTTATTAGTTGATTTTCTCTGC-ATTGTTTACTTCCA-TAC---TGAA--CC-GA-AGACTCATTTCA---T-GG-CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTTA--GGTTTTCAACCCA-GTTAGG-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTATTACAGCAATC-ACT-CAATC---AAAAA-AC------------------GTTACTATTGTTGTATTTGTTTGA-TTATAAGAAAGCATTTTGATCT---CAGTTGATATGGGAAAAAAT-TGTAACAGGA---AAAGT--TAAA-ACTTACGTGAT-ACA-AGGAAAGCTG--TACG-ATTG-TTCAGTTCCAATGTAT---AGTAGA-TATTAGAA-T--TGTTGAAAG-AT-C------C-CTCTGGGCA-ATT-TC-CA-CGATTTTTTTTTGGCAA---A--CCA-----------CAT-CGGTCTTATTACAAAGGA-GAAG--GTTG------TCTCACCC-TA-TT-TTT-GTA--TTGTATG-TATAAT--GAC-CTGAAAAT--G---ATTC--T----CA-AG----AA-TGG-TAATCA-ACCAAG-C-TGATT-T---AC-T-GT----GT--TAAGTC-------TTTTTTA-TCTTGAT-GTTAT-GCTTTTGATGAC-AT----GGT-CTGCTT-GCAGA-ATATTCTGCAAT-TACA--A-TGATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTAAA-T-TG--ATACAGTTTG---AA-----TTGGG--------C-T--ATT-TCT-ATG--T-T---G-A---AAA---CACAATTA---------TTAGAAATGGTGGG---A-ACTTTCCGCACAG-ACG-AGAAATGGGAATATAT-AGG---G---GAA-ACTTTTAG-AG-TGATTTAGATCAAT-TT---GTTTATTT-GG--G--ATTTTA-TTTAATTTCAA-TGGTGAAAT--TTCTTTGG-TAA--CGCAGTAAGACA-G-TTAGCATA-CACCGAG-GTCTCC-A---AAGTCGTTTAATTCTG-C---CCGTTTAAAT-----C-AACAATTA----AAGCAACTG-TATTTAAA-CA--TTG-TA-CTTATTT-CCTCTTTTTGATA-CTTA----GT---TTAGTAGTTTTgttcgatttctgaacattcttttcatgcagaaacacaattt
gi|3 : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTAT-GAT--CCTAATAA-TTACAAAAG--AATAA-TCTTATTAGTTG---TTTCTGGCAAATGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CA--GCCTCTTATAGAT-TTATTT---CAGATGCGCAATTTTTTGGTTTTCAACCCAAGTTAGGTACTACGGAGGCCATATTTGCTTT-A-CATTGTCTTA-TACAACAATCCACTCCAATTCCAAAAAA-ACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTG-TTGATTTATAAGAGAGC--TTTG-CCTTTACAGTTAATA-GCGGAAAAAT-TGT--CA-GA---AAATT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTTTCATTCC--ATGTAT---AGTATAGGATTAGAACT--TGTGTTAAA-ATGC------CTCTGGGGCCATATT-T--CA-CCATTTTTT----GAAA---A--CCA-----------TAT-CG--------------------GT-GTTG------TCTC-CTG-TATTT-TTT-GTA--TTGTATGTT-TAAT--GAC-TTGAAAA---G--AATTC-AT----CA-AA----AA-TGT-CAATCA-ACCAA--C-TGATT-T---ACTA-GT----GTTATAAGTC-------TTTTA-A-TCTTGAT-G-TAT-G----TTATGAC-AT----GGTGCTGCTT-GCAGACCT------CAGT-TAC-----TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TA--ATACAG-ATGA--AA-----TGGGG--------G-TTAGTTGTGACATG--T-G---C-A---AAGAC-CAAAATTGTT-GTAT-TTTAGAAATGGTGGGA--A-ACTT--TGCACAGTACA-AGAAATGGGAA-ATATAAGG---G---GGA-AATT-TAGAAG-TA--TTAGATCATA--T---GTTTATTTGGG--GA-GCTTTATTTTAATTTCAATTGGTAAATT--TTTA---G-TAA--CGCAG-AAG-CA-G-TTAGCAT--CAC--AA--TC-GC-A---AAG-CGTT--ATT-TGCC---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAATCA--TTGCTACCTTATTT-TCACCTTTTGATA-CTTA---TCT---TTTGTAGTATT
gi|5 : -T--TGTGTAAAA-AT-C------CTCTGT--TCATATT-GGGCA-CAATTTTT-----GAAC---GGATC------------TAT-TACAA----------GGA-GAAGTTGTTG------TATC-CCCCTGTTT-TTTTGTA--TTGTAT----TAATTGGCCTTTGGAAAT--GTGAATTA-AT----CA-AA----AAATG--TAATCA-ACAAAACC-TGATT-TTAGAC-A-GT----ATTAT--GTC-------CTGTATA-TCT-GATTG-TAT-GC---TGATGAC-AT----G-TGCTGCTT-GCAGA-AT------CAGT-TAC---T-T---ATTA----CAAAAATAT-TTCGTA-GATACGCGCTGCAAAATT-TTTTATACAA-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATGTTT-GGTTT-A---AAAACTTAAAACCGTTCGT-TATTTAGAAATAGTGAGGCCA-ACTT--GCCACAG-ATGAAGAAATGGAAATATATAGAG---GACAGGACCATTAGAGAAGTTA--TTAAACCAAAGTT---GTTTACTTTGGTTGTTTTTTTT-TTTAAATTCAA-TGGTAATTT--TTT----GTTAA--CACAG-AAG-CA-GTTTAGCATCACAC--AA-GTT-GCAA---AAG-CGTT--ATT-TG-CACTC---TT-AAT-----CAAACAA-TA----TAGCAATTG--A-TTAAA-CAACACG-TACCTGATTCACCTTTTTTTCATACCTTACATTGTATGTTTGTAGTATT
gi|6 : ataaaaacTTATATTGTTGTTT-CA-TAGATTT-TAAGAAAGTA-TTTGAC--C--CTGTTGATA-GATTTAAATTATGG-A-A-AA---AAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTA-CTAAGCATTA-TTCGGGTT--ATGTATCAAAACATG-AAAT---A-T--TGTGTTAAA------------TCTGCAGATATGCTGT--CA-GAATTTTGT----AGAA---G--TAAGGTAGGACTTTTAC-AG-------------GGA-GATGT-GTTGCATGTATCTC-CCA-TACTT-TTT-TCG--TTATATG-T-GAAC--GATTTTGAAGTA--G--AATTT--T----TA-AAGCGTGA-TGT-TGTTCC-ATT-A--C---ATT-T---ACGA-GA----ATTA-AA--C-------TTGTATG-TACTGAT-G-TAT-GC---AGATGAT-AT----GGTCATTTTT-GCTGA-A--------AGTATAC---A-TGA-ACTT----CAAAA-AAA-GT--TA-GAT--------GAA-----TT--ATATGA-ATGCACAAGTAACTGGGA--------T-CTTACAGTTA-CTA--T-T---G-AT--AAAAC-AAAAATAGCT-AT-T-TTCAGGAATGGAGGTA--A-At
gi|7 : -TACTTATTT-GTGAGTTGT-TG-T-TAAT----CCCTGAAAATTCA--AATTCTATACTTCAGAA----AA-TGGATAATCAGACCAA--CCTGATTAT---AC-AAGCCCTGGTTA-AAGTT-------CTTTGTAATCTTGAT-C-TATAGC---TAATGAC-ATTTTGGATGTTGTTTTGCAGA-AT------CAGT-TACTGTACTGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TG-AAAACT-T---ATACAG-ATG---AA-----CGGGGGGGGGGGTTGTTAATTGTGA-ATA--TTG---C-A---AAAAC-TAAAATTGTT-AT-A-TTTAGAAATGATGGAA--A-GCTT--CACACAA-ATG-AGAAATGGGAATAT--AAGG---G---GG---GTTATAGAAA-TA--TTAGATCAAC-TT---GTTTACTTGGG--C--GTTTTA-TTTAA-TTAAATTGataaaaaatgtagaaaaatgg
gi|7 : TT--ATT-TA-A-------TTAAATTGAAGC-AACAA-TA----AAGCAACTG-TA-----------------CCTTATTG-TCCCTTTTTGATA-CTTA---TG----TTTGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
gi|9 : tacttatttgtgagttgttgttaatccctgaaaattcaaattctatacttcagaaaatggataatcagaccaacctgattatacaagccctggttaaagttctttgtaatcttgatctatagctaatgacattttggatgttgttttgcagaatcagttactgtactgaattacaaaatatgttagatacgctgaaaacttatacagatgaacgggggggggggttgttaattgtgaatattgcaaaaactaaaattgttatatttagaaatgatggaaagcttcacacaaatgagaaatgggaatataaggggggttatagaaatattagatcaacttgtttacttgggcgttTGAGA-A-G--T-G---T-ACCTAAAAC-CAAGGTCGTT-AA-T-TCTAGAAATAGTGAAA--AGATTT--CG-AAAA-ATG-AG--ATGTGAATGTACAA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT
Alignments
lowQualScore : 222 11 11 1 1 1 111 11 1 11 222 1 222 2222 1 111 1 11 11 1 222 222 111 111 2222222 1 777777777777777777 1 1 11 33333 111111 2222222222 11 1 11 1 11 1 1 11 111 2222 11 33333333333 2222 9999999999999999999999999999999999999999999999999 222222 111 111 2222222 333333 1111 11 11 111 44444444444444444444444444 111 111111111 222222222 333333333 1111 11111 111 2222222222 2222222222 33333333333 111111 1111 22222222 11 11 11111111 22222 11 333333333333 11 1 111 11 22222222222 444444444 22222 1111 1 222222222222 222222222
lowQualScore : 111 1 1 66 88 1 5 5 5 6 333 1 6 6 7 88 3 88 77 333 3 7 1 7 3 555 5555 0 2 0 777 2 0 33 2 55 0 3 999 777 0 7 9 2 111 8 66 8 555 5555555 0 333333333333333333 0 8888 1 0 0 11 0 88888 111111 8 8888888888 0 33 0 33 99 0 0 99 2 0 0 1 33 777 0000 1 8888 11 1 55555555555 0 5555 0 2222 8 0 9999999999999999999999999999999999999999999999999 8 1 88 333333 8 77 3 6 6 999 000 000 1 0000000 444444 6 4444 6 44 6 3 55 6 6 111 33333333333333333333333333 6 3 777 6 111 1 6 888888888 6 222222222 6 444444444 4444 6 6 99 6 22222 6 666 666 6 5555555555 8888888888 5 0 66 00000000000 88 000000 2222 5 99999 4 5 1 5 5 0 88888888 66 0 8 11 3 55555555 5 66666 77 6 77 1 222222222222 11 8 8 5 0 999 11 77777777777 8 99 8 111111111 5 00000 8 8 7777 88 0 1 666666666666 8 8 1 8 444444444
lowQualScore : ... . . .. .. . . . . . ... . . . . .. . .. .. ... . . . . . ... .... . . . ... . . .. . .. . . ... ... . . . . ... . .. . ... ....... . .................. . .... . . . .. . ..... ...... . .......... . .. . .. .. . . .. . . . . .. ... .... . .... .. . ........... . .... . .... . . ................................................. . . .. ...... . .. . . . ... ... ... . ....... ...... . .... . .. . . .. . . ... .......................... . . ... . ... . . ......... . ......... . ......... .... . . .. . ..... . ... ... . .......... .......... . . .. ........... .. ...... .... . ..... . . . . . . ........ .. . . .. . ........ . ..... .. . .. . ............ .. . . . . ... .. ........... . .. . ......... . ..... . . .... .. . . ............ . . . . .........
lowQualScore : 555 0 0 00 00 0 0 5 0 7 000 0 7 7 3 33 3 33 77 333 7 3 0 3 3 777 7777 0 5 2 555 5 0 88 5 22 0 2 222 555 2 0 8 5 000 8 55 8 888 8888888 0 888888888888888888 8 4444 4 6 6 88 8 00000 000000 0 6666666666 8 88 0 55 88 0 2 22 5 0 0 0 88 555 2222 0 5555 00 4 66666666666 8 2222 8 8888 0 8 0000000000000000000000000000000000000000000000000 0 0 88 000000 0 77 7 7 7 555 888 222 7 7777777 888888 7 2222 7 22 7 5 88 7 7 777 00000000000000000000000000 7 2 555 7 777 0 7 888888888 7 555555555 7 222222222 2222 7 7 22 7 55555 7 888 777 7 0000000000 3333333333 0 4 99 88888888888 44 555555 0000 0 77777 3 7 4 7 0 4 88888888 44 8 0 00 8 88888888 2 00000 00 0 22 4 222222222222 00 0 0 4 8 666 00 88888888888 0 22 0 000000000 6 00000 0 0 0000 88 6 0 444444444444 0 0 0 0 666666666
consensus : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGA-TCCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCTT--CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACAAGGG-CAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AAGT-C-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTGT-ATTTAAA-CG--TTG-TACCTTA-TTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
Reference ( family-917 ) : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCAAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGATTCCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCTC--CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACAAGGG---GGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AAGT-C-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTGT-ATTTAAA-CG--TTG-TACCTTA-TTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAATGAC--GTAAATAA-TTACAGAGG--TATTTCTATTGTTAGCTG---TTTTGGGAAACTATTCAC---CAGTGCT--TTGAA---TAACAGA---ATTTTAGAGTGGGACAAGG------AG-AACACTATTTTGACAGATGCACAGTTT---GTTTTCCGACCAGGGTTATCAACAGTTGATGCAATATTTGTATT-A-CAATCTTTAATT-TAGAAA---ACTCTGA----AAAAAACAC------------------GTTTATATTGTTGTTTT-G-TAGATTT-TCAAAAAGCG-TTTGAC-TC--TA-TTAATA--TGTATAAAT-TAT-----GGTTTAAATTGTTGAATGTTT---GTATT-CA-AGGGAAACTGCTTAAA-GTTGTC-CAGGCT--TTGTAC---AGCA--G-TGTGAAA-TGCTGTGCAAAATAT-GGTGGGGCTTTAAGCGAATACT-T--AAGCAAT---------GAAATGGG--TCT-----------TATGCA-------------GGACGAAGT-GTTA------TCAC-CAT-TACTT-TTT-GCT--CTTTATGT-C-AAT--AATTTTGAGA-T--A--AATTTT--A--TCC-GG----AA-CAA-TTGTCC-ATCTA--T-TGAAT-T---AC-A----------ATTAATCAACATATTTTTATG-----AAT-G-TAT-GC---TGATGATTAT----A--------T--CAGA-GT------CAG------------G-GTTA----CAAAG-CAT-GT--TA-AGTACTC--TATATAGCTATT--CTACTG-AT-----------TGAGA--------T-TTAATAGTAA-ATG--T-G---CCA---AAAAC-CAAGGTTGTT-AT-T-TTTGGAAATGGTGGAAC-A-ATTT--TGGA-AA-ATG-TAAAATGG--ATATACAACAACCAGTA-TATT---GAAG-TT--GTAAA-CACA-TTTAAGT--ACTTAGG--A--ATGTTG-TTTAACTTTAAT-GGAAAATTAATCC----A--AA--CGCAA-AAA-CATGTT-GCAG--AAC--AAGGGC-GG-A---AGG-CACT--TTT-TG-C----------AAT-----C-TCCAA-TACTTTGAGAAATCATTATTTTAA-TG--TTG-AAACACAATGT-TCAATTTTTGATA-CTTA---TGT---
gi|10 : TGA-AAG--T-G---T-ACCTAAAAC--AAGGTTGTT-AA-T-TCTAGAAATAGTGAAA--G-ATTT--CG-AAAA-ATG-AG--ATGTGAATGTACAAacatacatgtaatattctttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|11 : aacatacgtggcgattctatctgagactccctcagggttataaaattaagtatgacaagcactctgtaattattttcaA-AGACTCATTTAA---TGGG-TA--GCCTCCTAT-GATATTATTT---CAGATGTACAATTT---AATTTTCAACCCAAGTTAGGTACTACGGGGGCAATATTTGCTTT-A-CCTT-TCTTATTACAA-AATA-ACTCCAA-TCCAAAAAA-AC------------------GTTTATATTGTTG-TTTCG-TTGA-TTATAAGAAAGCA-TTTGAC--T--CAGTTAACA-GAGG-AAAAC-TGT-ACA-GA---Acaataagtgccttgtagctgtaaatacatttaagaatttaggaatgttatttagccataatgga
gi|14 : TTATCTGGG--T--GTACTG-TTTTATTACAAC-GGAAAATT--C-C----G-TAAAACCCAG-AAA-CATGCTA-CAG--AAC--AAG----GG-AGAGAAG-CGTT--AT
gi|2 : gatgttgtcagtgaatgtaaATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTGTTGATCACTAAATAATTTACAGTAGGCAGTAGCTCTTATTAGTTGATTTTCTCTGC-ATTGTTTACTTCCA-TAC----TGAACC--GA-AGACTCATTTCA---T-GG-CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTTA--GGTTTTCAACCC-AGTTAGG-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTATTACAGCAATC-ACTC--AATC--AAAAA-AC------------------GTTACTATTGTTGTATTTGTTTGA-TTATAAGAAAGCATTTTGATCT---CAGTTGATATGGGAAAAAAT-TGTAACAGGA---AAAGT--TAAA-ACTTACGTGATA-CA-AGGAAAGCTG--TACG-ATTGTT-CAGTTCCAATGTAT---AGTAGAT-ATTAGAA-T--TGTTGAAAG-AT-C------C-CTCTGGGCA-ATT-TC-CA-CGATTTTTTTTTGGCAA---A--CCA-----------CAT-CGGTCTTATTACAAAGGA-GAAG--GTTG------TCTCACCC-TA-TT-TTT-GTA--TTGTATGTAT-AAT--GAC-CTGAAAAT--G---ATTC------TCA-AG----AA-TGG-TAATCA-ACCAAG-C-TGATT-T---AC-T-GT----GT--TAAGTC-------TTTTTTA-TCTTGAT-GTTAT-GCTTTTGATGAC-AT----GGT-CTGCTT-GCAGA-ATATTCTGCAAT-TACA--A-TGATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTAAA-T-TG--ATACAGTTTG---AA-----TTGGG--------C-T--ATT-TCT-ATG--T-T---G-A---AAA---CACAATTA---------TTAGAAATGGTGGG---A-ACTTTCCGCACAG-ACG-AGAAATGGGAATATAT-AGGG---GAA-ACTTTTAG-AG-TGATTTAGATCAAT-TT---GTTTATTT-GG--G--ATTTTA-TTTAATTTCAA-TGGTGAAAT--TTCTTTGG-TAA--CGCAGTAAGACA-GTTAGCATA-CACCGAGGT-CTCC-A---AAGTCGTTTAATTCTG-C---CCGTTTAAAT-----C-AACAATTA----AAGCAACTGT-ATTTAAA-CA--TTG-TA-CTTA-TTT-CCTCTTTTTGATA-CTTA----GT---TTAGTAGTTTTgttcgatttctgaacattcttttcatgcagaaacacaattt
gi|3 : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTAT-GAT--CCTAATAA-TTACAAAAG--AATAA-TCTTATTAGTTG---TTTCTGGCAAATGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CA--GCCTCTTATAGAT-TTATTT---CAGATGCGCAATTTTTTGGTTTTCAACCCAAGTTAGGTACTACGGAGGCCATATTTGCTTT-A-CATTGTCTTAT-ACAACAATCCACTCCAATTCCAAAAAA-ACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTG-TTGATTTATAAGAGAGC--TTTG-CCTTTACAGTTAATA-GCGGAAAAAT-TGT--CA-GA---AAATT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTTTCATTCC--ATGTAT---AGTATAGGATTAGAACT--TGTGTTAAA-ATGC------CTCTGGGGCCATATT-T--CA-CCATTTTTT----GAAA---A--CCA-----------TAT-CG-------------G-------T-GTTG------TCTC-CTG-TATTT-TTT-GTA--TTGTATGT-TTAAT--GACTT-GAAAA---G--AATTC---A--TCA-AA----AA-TGT-CAATCA-ACCAA--C-TGATT-T---ACTA-GT----GTTATAAGTC-------TTTTA-A-TCTTGAT-G-TAT-GT---T-ATGAC-AT----GGTGCTGCTT-GCAGACCT------CAGT-TAC-----TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TA--ATACAG-ATGA--AA-----TGGGG--------G-TTAGTTGTGACATG--T-G---C-A---AAGAC-CAAAATTGTT-GTAT-TTTAGAAATGGTGGGA--A-ACTT--TGCACAGTACA-AGAAATGGGAA-ATATAAGGG---GGA-AATT-TAGAAG-TA--TTAGATCATA--T---GTTTATTTGGG--GA-GCTTTATTTTAATTTCAATTGGTAAATT--TTTA---G-TAA--CGCAG-AAG-CA-GTTAGCAT--CAC--AA-T-C-GC-A---AAG-CGTT--ATT-TGCC---C---TTAAAT-----C-AACAA-TA----AAGCAACTGT-ATTTAAATCA--TTGCTACCTTA-TTT-TCACCTTTTGATA-CTTA---TCT---TTTGTAGTATT
gi|5 : -T--TGTGTAAAA-AT-C------CTCTGT--TCATATT-GGGCA-CAATTTTT-----GAAC---GGATC------------TAT-TACAA----------GGA-GAAGTTGTTG------TATC-CCCCTGTTT-TTTTGTA--TTGTAT---T-AATTGGCCTTTGGAAAT--GTGAATTA---A--TCA-AA----AAATG--TAATCA-ACAAAACC-TGATT-TTAGAC-A-GT----ATTAT--GTC-------CTGTATA-TCT-GATTG-TAT-GC---TGATGAC-AT----G-TGCTGCTT-GCAGA-AT------CAGT-TAC---T-T---ATTA----CAAAAATAT-TTCGTA-GATACGCGCTGCAAAATT-TTTTATACAA-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATGTTT-GGTTT-A---AAAACTTAAAACCGTTCGT-TATTTAGAAATAGTGAGGCCA-ACTT--GCCACAG-ATGAAGAAATGGAAATATATAGAGGACAGGACCATTAGAGAAGTTA--TTAAACCAAAGTT---GTTTACTTTGGTTGTTTTTTTT-TTTAAATTCAA-TGGTAATTT--TTT----GTTAA--CACAG-AAG-CAGTTTAGCATCACAC--AAGT-T-GCAA---AAG-CGTT--ATT-TG-CACTC---TT-AAT-----CAAACAA-TA----TAGCAATTG--A-TTAAA-CAACACG-TACCTGA-TTCACCTTTTTTTCATACCTTACATTGTATGTTTGTAGTATT
gi|6 : ataaaaacTTATATTGTTGTTT-CA-TAGATTT-TAAGAAAGTA-TTTGACC----CTGTTGATA-GATTTAAATTATGG-A-A-AA---AAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTAC-TAAGCATTATT-CGGGTT--ATGTATCAAAACATGA-AATA----T--TGTGTTAAA------------TCTGCAGATATGCTGT--CA-GAATTTTGT----AGAA---G--TAAGGTAGGACTTTTAC-AG-------------GGA-GATGT-GTTGCATGTATCTC-CCA-TACTT-TTT-TCG--TTATATGT-G-AAC--GATTTTGAAGTA--G--AATTT------TTA-AAGCGTGA-TGT-TGTTCC-ATT-A--C---ATT-T---ACGA-GA----ATTA-AA--C-------TTGTATG-TACTGAT-G-TAT-GC---AGATGAT-AT----GGTCATTTTT-GCTGA-A--------AGTATAC---A-TGA-ACTT----CAAAA-AAA-GT--TA-GAT--------GAA-----TT--ATATGA-ATGCACAAGTAACTGGGA--------T-CTTACAGTTA-CTA--T-T---G-AT--AAAAC-AAAAATAGCT-AT-T-TTCAGGAATGGAGGTA--A-At
gi|7 : -TACTTATTT-GTGAGTTGT-TGT-T-AAT----CCCTGAAAATTCA--AATTCTATACTTCAGAA----AA-TGGATAATCAGACCAA--CCTGATTAT---AC-AAGCCCTGGTTA-AAGTT-------CTTTGTAATCTTGAT-C-TATAGC---TAATGAC-ATTTTGGATGTTGTTTTGCAGA-AT------CAGT-TACTGTACTGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TG-AAAACT-T---ATACAG-ATG---AA-----CGGGGGGGGGGGTTGTTAATTGTGA-ATA--TTG---C-A---AAAAC-TAAAATTGTT-AT-A-TTTAGAAATGATGGAA--A-GCTT--CACACAA-ATG-AGAAATGGGAATAT--AAGGG---GG---GTTATAGAAA-TA--TTAGATCAAC-TT---GTTTACTTGGG--C--GTTTTA-TTTAA-TTAAATTGataaaaaatgtagaaaaatgg
gi|7 : TT--ATT-TA-A-------TTAAATTGAAGC-AACAA-TA----AAGCAACTGT-A-----------------CCTTA-TTG-TCCCTTTTTGATA-CTTA---TG----TTTGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
gi|9 : tacttatttgtgagttgttgttaatccctgaaaattcaaattctatacttcagaaaatggataatcagaccaacctgattatacaagccctggttaaagttctttgtaatcttgatctatagctaatgacattttggatgttgttttgcagaatcagttactgtactgaattacaaaatatgttagatacgctgaaaacttatacagatgaacgggggggggggttgttaattgtgaatattgcaaaaactaaaattgttatatttagaaatgatggaaagcttcacacaaatgagaaatgggaatataaggggggttatagaaatattagatcaacttgtttacttgggcgttTGAGA-A-G--T-G---T-ACCTAAAAC-CAAGGTCGTT-AA-T-TCTAGAAATAGTGAAA--AGATTT--CG-AAAA-ATG-AG--ATGTGAATGTACAA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT
Alignments
lowQualScore : 222 11 11 1 1 1 111 11 1 11 222 1 222 2222 1 111 1 11 11 1 222 222 1 111 111 1111 1 777777777777777777 1 1 11 2222222 111111 2222222222 11 1 11 1 11 1 1 11 111 2222 11 33333333333 2222 9999999999999999999999999999999999999999999999999 222222 111 111 2222222 333333 1111 11 11 111 44444444444444444444444444 111 111111111 222222222 333333333 1111 11111 111 2222222222 2222222222 33333333333 111111 1111 22222222 11 11 11111111 22222 1 333333333333 11 1 111 11 222222222222 444444444 22222 1111 1 3333333333 222222222
lowQualScore : 111 1 1 66 88 1 5 5 5 6 333 1 6 6 7 88 3 88 77 333 3 7 1 7 3 555 5555 0 2 0 777 2 0 33 2 55 0 3 999 777 0 0 9 2 111 8 66 8 555 2 2 8888 0 333333333333333333 0 8888 1 0 0 11 0 6666666 111111 8 8888888888 0 33 0 33 99 0 0 99 2 0 0 1 33 777 0000 1 8888 11 1 55555555555 0 5555 0 2222 8 0 9999999999999999999999999999999999999999999999999 8 1 88 333333 8 77 3 6 6 999 000 000 1 0000000 444444 6 4444 6 44 6 3 55 6 6 111 33333333333333333333333333 6 3 777 6 111 1 6 888888888 6 222222222 6 444444444 4444 6 6 99 6 22222 6 666 666 6 5555555555 8888888888 5 0 66 00000000000 88 000000 2222 5 99999 4 5 1 5 5 0 5 5 99999999 66 0 8 11 3 55555555 0 5 66666 77 6 8 1 222222222222 11 8 8 5 0 999 11 777777777777 8 99 8 111111111 5 00000 8 8 7777 88 0 1 3333333333 1 8 1 8 444444444
lowQualScore : ... . . .. .. . . . . . ... . . . . .. . .. .. ... . . . . . ... .... . . . ... . . .. . .. . . ... ... . . . . ... . .. . ... . . .... . .................. . .... . . . .. . ....... ...... . .......... . .. . .. .. . . .. . . . . .. ... .... . .... .. . ........... . .... . .... . . ................................................. . . .. ...... . .. . . . ... ... ... . ....... ...... . .... . .. . . .. . . ... .......................... . . ... . ... . . ......... . ......... . ......... .... . . .. . ..... . ... ... . .......... .......... . . .. ........... .. ...... .... . ..... . . . . . . . . ........ .. . . .. . ........ . . ..... .. . . . ............ .. . . . . ... .. ............ . .. . ......... . ..... . . .... .. . . .......... . . . . .........
lowQualScore : 555 0 0 00 00 0 0 5 0 7 000 0 7 7 3 33 3 33 77 333 7 3 0 3 3 777 7777 0 5 2 555 5 0 88 5 22 0 2 222 555 2 5 8 5 000 8 55 8 888 5 0 2222 0 888888888888888888 8 4444 4 6 6 88 8 4444444 000000 0 6666666666 8 88 0 55 88 0 2 22 5 0 0 0 88 555 2222 0 5555 00 4 66666666666 8 2222 8 8888 0 8 0000000000000000000000000000000000000000000000000 0 0 88 000000 0 77 7 7 7 555 888 222 7 7777777 888888 7 2222 7 22 7 5 88 7 7 777 00000000000000000000000000 7 2 555 7 777 0 7 888888888 7 555555555 7 222222222 2222 7 7 22 7 55555 7 888 777 7 0000000000 3333333333 0 4 99 88888888888 44 555555 0000 0 77777 3 7 4 7 0 4 7 7 44444444 44 8 0 00 8 88888888 8 2 00000 00 0 0 4 222222222222 00 0 0 4 8 666 00 888888888888 0 22 0 000000000 6 00000 0 0 0000 88 6 0 6666666666 0 0 0 0 666666666
consensus : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACC-T--CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGCAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
Reference ( family-917 ) : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCTT--CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGCAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAATGAC--GTAAATAA-TTACAGAGG--TATTTCTATTGTTAGCTG---TTTTGGGAAACTATTCAC---CAGTGCT--TTGAA---TAACAGA---ATTTTAGAGTGGGACAAGG------AG-AACACTATTTTGACAGATGCACAGTTT---GTTTTCCGACCAGGGTTATCAACAGTTGATGCAATATTTGTATT-A-CAATCTTTAATT-TAGAAA---ACTCTGA----AAAAAACAC------------------GTTTATATTGTTGTTTT-G-TAGATTT-TCAAAAAGCG-TTTGAC--T--CTATTAATA--TGTATAAAT-TAT-----GGTTTAAATTGTTGAATGTTT---GTATT-CA-AGGGAAACTGCTTAAA-GTTGTC-CAGGCT--TTGTAC---AGCA--G-TGTGAAA-TGCTGTGCAAAATAT-GGTGGGGCTTTAAGCGAATACT-T--AAGCAAT---------GAAATGGG--TCT-----------TATGCA-------------GGACGAAGT-GTTA------TCAC-CAT-TACTT-TTT-GCT--CTTTATGT-C-AAT--AATTTTGAGA-T--A--AATTTT--A--TCC-GG----AA-CAA-TTGTCC-ATCTA--T-TGAAT-T---AC-A----------ATTAATCAACATATTTTTATG-----AAT-G-TAT-GC---TGATGATTAT----A--------T--CAGA-GT------CAG------------G-GTTA----CAAAG-CAT-GT--TA-AGTACTC--TATATAGCTATT--CTACTG-AT-----------TGAGA--------T-TTAATAGTAA-ATG--T-G---CCA---AAAAC-CAAGGTTGTT-AT-T-TTTGGAAATGGTGGAAC-A-ATTT--TGGA-AA-ATG-TAAAATGG--ATATACA-ACAACCAGTA-TATT---GAAG-TT--GTAAA-CACA-TTTAAG--TACTTAGG--A--ATGTTG-TTTAACTTTAA-TGGAAAATTAATCC----A--AA--CGCAA-AAA-CATGTT-GCAG--AAC--AAGGGC-GG-A---AGG-CACT--TTT-TG-C----------AAT-----C-TCCAA-TACTTTGAGAAATCATTATTTTAA-TG--TTGAAACACAATGT-TCAATTTTTGATA-CTTA---TGT---
gi|10 : TGA-AAG--T-G---T-ACCTAAAAC--AAGGTTGTT-AA-T-TCTAGAAATAGTGAAA--G-ATTT--CG-AAAA-ATG-AG--ATGTGAATGTACA-A-acatacatgtaatattctttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|11 : aacatacgtggcgattctatctgagactccctcagggttataaaattaagtatgacaagcactctgtaattattttcaA-AGACTCATTTAA---TGGG-TA--GCCTCCTAT-GATATTATTT---CAGATGTACAATTT---AATTTTCAACCCAAGTTAGGTACTACGGGGGCAATATTTGCTTT-A-CCTT-TCTTATTACAA-AATA-ACTCCAAT-CCAAAAAA-AC------------------GTTTATATTGTTG-TTTCG-TTGA-TTATAAGAAAGCA-TTTGAC--T--CAGTTAACA-GAGG-AAAAC-TGT-ACA-GA---Acaataagtgccttgtagctgtaaatacatttaagaatttaggaatgttatttagccataatgga
gi|14 : TTATCTGGG--T--GTACTG-TTTTATTACAAC-GGAAAATT--C-C----G-TAAAACCCAG-AAA-CATGCTA-CAG--AAC--AA-G---GG-AGAGAAG-CGTT--AT
gi|2 : gatgttgtcagtgaatgtaaATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTGTTGATCACTAAATAATTTACAGTAGGCAGTAGCTCTTATTAGTTGATTTTCTCTGC-ATTGTTTACTTCCA-TAC----TGAACC--GA-AGACTCATTTCA---T-GG-CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTTA--GGTTTTCAACCC-AGTTAGG-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTATTACAGCAATC-ACT-CAAT-C--AAAAA-AC------------------GTTACTATTGTTGTATTTGTTTGA-TTATAAGAAAGCATTTTGATC-T--CAGTTGATATGGGAAAAAAT-TGTAACAGGA---AAAGT--TAAA-ACTTACGTGATA-CA-AGGAAAGCTG--TACG-ATTGTT-CAGTTCCAATGTAT---AGTAGAT-ATTAGAA-T--TGTTGAAAG-AT-C------C-CTCTGGGCA-ATT-TC-CA-CGATTTTTTTTTGGCAA---A--CCA-----------CAT-CGGTCTTATTACAAAGGA-GAAG--GTTG------TCTCACCC-TA-TT-TTT-GTA--TTGTATGTAT-AAT--GAC-CTGAAAAT--G---ATTC------TCA-AG----AA-TGG-TAATCA-ACCAAG-C-TGATT-T---AC-T-GT----GT--TAAGTC-------TTTTTTA-TCTTGAT-GTTAT-GCTTTTGATGAC-AT----GGT-CTGCTT-GCAGA-ATATTCTGCAAT-TACA--A-TGATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTAAA-T-TG--ATACAGTTTG---AA-----TTGGG--------C-T--ATT-TCT-ATG--T-T---G-A---AAA---CACAATTA---------TTAGAAATGGTGGG---A-ACTTTCCGCACAG-ACG-AGAAATGGGAATATATA-G-GG---GAA-ACTTTTAG-AG-TGATTTAGATCAAT-TT---GTTTATTT-GG--G--ATTTTA-TTTAATTTCAA-TGGTGAAAT--TTCTTTGG-TAA--CGCAGTAAGACA-GTTAGCATA-CACCGAG-GTCTCC-A---AAGTCGTTTAATTCTG-C---CCGTTTAAAT-----C-AACAATTA----AAGCAACTG-TATTTAAA-CA--TTG-TA-CTTATTT-CCTCTTTTTGATA-CTTA----GT---TTAGTAGTTTTgttcgatttctgaacattcttttcatgcagaaacacaattt
gi|3 : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTAT-GAT--CCTAATAA-TTACAAAAG--AATAA-TCTTATTAGTTG---TTTCTGGCAAATGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CA--GCCTCTTATAGAT-TTATTT---CAGATGCGCAATTTTTTGGTTTTCAACCCAAGTTAGGTACTACGGAGGCCATATTTGCTTT-A-CATTGTCTTAT-ACAACAATCCACTCCAATTCCAAAAAA-ACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTG-TTGATTTATAAGAGAGC--TTTG-CCTTTACAGTTAATA-GCGGAAAAAT-TGT--CA-GA---AAATT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTTTCATTCC--ATGTAT---AGTATAGGATTAGAACT--TGTGTTAAA-ATGC------CTCTGGGGCCATATT-T--CA-CCATTTTTT----GAAA---A--CCA-----------TAT-CG-------------G-------T-GTTG------TCTC-CTG-TATTT-TTT-GTA--TTGTATGT-TTAAT--GACTT-GAAAA---G--AATTC---A--TCA-AA----AA-TGT-CAATCA-ACCAA--C-TGATT-T---ACTA-GT----GTTATAAGTC-------TTTTA-A-TCTTGAT-G-TAT-GT---T-ATGAC-AT----GGTGCTGCTT-GCAGACCT------CAGT-TAC-----TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TA--ATACAG-ATGA--AA-----TGGGG--------G-TTAGTTGTGACATG--T-G---C-A---AAGAC-CAAAATTGTT-GTAT-TTTAGAAATGGTGGGA--A-ACTT--TGCACAGTACA-AGAAATGGGAA-ATATA-A-GGG--GGA-AATT-TAGAAG-TA--TTAGATCATA--T---GTTTATTTGGG--GA-GCTTTATTTTAATTTCAATTGGTAAATT--TTTA---G-TAA--CGCAG-AAG-CA-GTTAGCAT--CAC--AA--TC-GC-A---AAG-CGTT--ATT-TGCC---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAATCA--TTGCTACCTTATTT-TCACCTTTTGATA-CTTA---TCT---TTTGTAGTATT
gi|5 : -T--TGTGTAAAA-AT-C------CTCTGT--TCATATT-GGGCA-CAATTTTT-----GAAC---GGATC------------TAT-TACAA----------GGA-GAAGTTGTTG------TATC-CCCCTGTTT-TTTTGTA--TTGTAT---T-AATTGGCCTTTGGAAAT--GTGAATTA---A--TCA-AA----AAATG--TAATCA-ACAAAACC-TGATT-TTAGAC-A-GT----ATTAT--GTC-------CTGTATA-TCT-GATTG-TAT-GC---TGATGAC-AT----G-TGCTGCTT-GCAGA-AT------CAGT-TAC---T-T---ATTA----CAAAAATAT-TTCGTA-GATACGCGCTGCAAAATT-TTTTATACAA-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATGTTT-GGTTT-A---AAAACTTAAAACCGTTCGT-TATTTAGAAATAGTGAGGCCA-ACTT--GCCACAG-ATGAAGAAATGGAAATATATAGA-GGACAGGACCATTAGAGAAGTTA--TTAAACCAAAGTT---GTTTACTTTGGTTGTTTTTTTT-TTTAAATTCAA-TGGTAATTT--TTT----GTTAA--CACAG-AAG-CAGTTTAGCATCACAC--AA-GTT-GCAA---AAG-CGTT--ATT-TG-CACTC---TT-AAT-----CAAACAA-TA----TAGCAATTG--A-TTAAA-CAACACG-TACCTGATTCACCTTTTTTTCATACCTTACATTGTATGTTTGTAGTATT
gi|6 : ataaaaacTTATATTGTTGTTT-CA-TAGATTT-TAAGAAAGTA-TTTGACCCT----GTTGATA-GATTTAAATTATGG-A-A-AA---AAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTAC-TAAGCATTATT-CGGGTT--ATGTATCAAAACATGA-AATA----T--TGTGTTAAA------------TCTGCAGATATGCTGT--CA-GAATTTTGT----AGAA---G--TAAGGTAGGACTTTTAC-AG-------------GGA-GATGT-GTTGCATGTATCTC-CCA-TACTT-TTT-TCG--TTATATGT-G-AAC--GATTTTGAAGTA--G--AATTT------TTA-AAGCGTGA-TGT-TGTTCC-ATT-A--C---ATT-T---ACGA-GA----ATTA-AA--C-------TTGTATG-TACTGAT-G-TAT-GC---AGATGAT-AT----GGTCATTTTT-GCTGA-A--------AGTATAC---A-TGA-ACTT----CAAAA-AAA-GT--TA-GAT--------GAA-----TT--ATATGA-ATGCACAAGTAACTGGGA--------T-CTTACAGTTA-CTA--T-T---G-AT--AAAAC-AAAAATAGCT-AT-T-TTCAGGAATGGAGGTA--A-At
gi|7 : -TACTTATTT-GTGAGTTGT-TGT-T-AAT----CCCTGAAAATTCA--AATTCTATACTTCAGAA----AA-TGGATAATCAGACCAA--CCTGATTAT---AC-AAGCCCTGGTTA-AAGTT-------CTTTGTAATCTTGAT-C-TATAGC---TAATGAC-ATTTTGGATGTTGTTTTGCAGA-AT------CAGT-TACTGTACTGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TG-AAAACT-T---ATACAG-ATG---AA-----CGGGGGGGGGGGTTGTTAATTGTGA-ATA--TTG---C-A---AAAAC-TAAAATTGTT-AT-A-TTTAGAAATGATGGAA--A-GCTT--CACACAA-ATG-AGAAATGGGAATAT--A-A-GGG--GG---GTTATAGAAA-TA--TTAGATCAAC-TT---GTTTACTTGGG--C--GTTTTA-TTTAA-TTAAATTGataaaaaatgtagaaaaatgg
gi|7 : TT--ATT-TA-A-------TTAAATTGAAGC-AACAA-TA----AAGCAACTG-TA-----------------CCTTATTG-TCCCTTTTTGATA-CTTA---TG----TTTGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
gi|9 : tacttatttgtgagttgttgttaatccctgaaaattcaaattctatacttcagaaaatggataatcagaccaacctgattatacaagccctggttaaagttctttgtaatcttgatctatagctaatgacattttggatgttgttttgcagaatcagttactgtactgaattacaaaatatgttagatacgctgaaaacttatacagatgaacgggggggggggttgttaattgtgaatattgcaaaaactaaaattgttatatttagaaatgatggaaagcttcacacaaatgagaaatgggaatataaggggggttatagaaatattagatcaacttgtttacttgggcgttTGAGA-A-G--T-G---T-ACCTAAAAC-CAAGGTCGTT-AA-T-TCTAGAAATAGTGAAA--AGATTT--CG-AAAA-ATG-AG--ATGTGAATGTACA-A-
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT
Alignments
lowQualScore : 222 11 11 1 1 1 111 11 1 11 222 1 222 2222 1 111 1 11 11 1 222 222 1 111 111 1111 1 777777777777777777 1 1 11 1111111 111111 2222222222 11 1 11 1 11 1 1 11 111 2222 11 33333333333 2222 9999999999999999999999999999999999999999999999999 222222 111 111 2222222 333333 1111 11 11 111 44444444444444444444444444 111 111111111 222222222 333333333 1111 11111 111 2222222222 2222222222 33333333333 111111 1111 22222222 11 11 11111111 22222 1 333333333333 11 1 111 11 222222222222 444444444 22222 1111 1 3333333333 222222222
lowQualScore : 111 1 1 66 88 1 5 5 5 6 333 1 6 6 7 88 3 88 77 333 3 7 1 7 3 555 5555 0 2 0 777 2 0 33 2 55 0 3 999 777 0 0 9 2 111 8 66 8 555 2 2 8888 0 333333333333333333 0 8888 1 0 0 11 8888888 1 111111 8 8888888888 0 33 0 33 99 0 0 99 2 0 0 1 33 777 0000 1 8888 11 1 55555555555 0 5555 0 2222 8 0 9999999999999999999999999999999999999999999999999 8 1 88 333333 8 77 3 6 6 999 000 000 1 0000000 444444 6 4444 6 44 6 3 55 6 6 111 33333333333333333333333333 6 3 777 6 111 1 6 888888888 6 222222222 6 444444444 4444 6 6 99 6 22222 6 666 666 6 5555555555 8888888888 5 0 66 00000000000 88 000000 2222 5 99999 4 5 1 5 5 0 5 5 99999999 66 0 8 11 3 55555555 0 5 66666 77 6 8 1 222222222222 11 8 8 5 0 999 11 777777777777 8 99 8 111111111 5 00000 8 8 7777 88 0 1 3333333333 1 8 1 8 444444444
lowQualScore : ... . . .. .. . . . . . ... . . . . .. . .. .. ... . . . . . ... .... . . . ... . . .. . .. . . ... ... . . . . ... . .. . ... . . .... . .................. . .... . . . .. ....... . ...... . .......... . .. . .. .. . . .. . . . . .. ... .... . .... .. . ........... . .... . .... . . ................................................. . . .. ...... . .. . . . ... ... ... . ....... ...... . .... . .. . . .. . . ... .......................... . . ... . ... . . ......... . ......... . ......... .... . . .. . ..... . ... ... . .......... .......... . . .. ........... .. ...... .... . ..... . . . . . . . . ........ .. . . .. . ........ . . ..... .. . . . ............ .. . . . . ... .. ............ . .. . ......... . ..... . . .... .. . . .......... . . . . .........
lowQualScore : 555 0 0 00 00 0 0 5 0 7 000 0 7 7 3 33 3 33 77 333 7 3 0 3 3 777 7777 0 5 2 555 5 0 88 5 22 0 2 222 555 2 5 8 5 000 8 55 8 888 5 0 2222 0 888888888888888888 8 4444 4 6 6 88 8888888 4 000000 0 6666666666 8 88 0 55 88 0 2 22 5 0 0 0 88 555 2222 0 5555 00 4 66666666666 8 2222 8 8888 0 8 0000000000000000000000000000000000000000000000000 0 0 88 000000 0 77 7 7 7 555 888 222 7 7777777 888888 7 2222 7 22 7 5 88 7 7 777 00000000000000000000000000 7 2 555 7 777 0 7 888888888 7 555555555 7 222222222 2222 7 7 22 7 55555 7 888 777 7 0000000000 3333333333 0 4 99 88888888888 44 555555 0000 0 77777 3 7 4 7 0 4 7 7 44444444 44 8 0 00 8 88888888 8 2 00000 00 0 0 4 222222222222 00 0 0 4 8 666 00 888888888888 0 22 0 000000000 6 00000 0 0 0000 88 6 0 6666666666 0 0 0 0 666666666
consensus : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCT---CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGCAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
Reference ( family-917 ) : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCT---CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGCAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAATGAC--GTAAATAA-TTACAGAGG--TATTTCTATTGTTAGCTG---TTTTGGGAAACTATTCAC---CAGTGCT--TTGAA---TAACAGA---ATTTTAGAGTGGGACAAGG------AG-AACACTATTTTGACAGATGCACAGTTT---GTTTTCCGACCAGGGTTATCAACAGTTGATGCAATATTTGTATT-A-CAATCTTTAATT-TAGAAA---ACTCTGA----AAAAAACAC------------------GTTTATATTGTTGTTTT-G-TAGATTT-TCAAAAAGCG-TTTGAC-T---CTATTAATA--TGTATAAAT-TAT-----GGTTTAAATTGTTGAATGTTT---GTATT-CA-AGGGAAACTGCTTAAA-GTTGTC-CAGGCT--TTGTAC---AGCA--G-TGTGAAA-TGCTGTGCAAAATAT-GGTGGGGCTTTAAGCGAATACT-T--AAGCAAT---------GAAATGGG--TCT-----------TATGCA-------------GGACGAAGT-GTTA------TCAC-CAT-TACTT-TTT-GCT--CTTTATGT-C-AAT--AATTTTGAGA-T--A--AATTTT--A--TCC-GG----AA-CAA-TTGTCC-ATCTA--T-TGAAT-T---AC-A----------ATTAATCAACATATTTTTATG-----AAT-G-TAT-GC---TGATGATTAT----A--------T--CAGA-GT------CAG------------G-GTTA----CAAAG-CAT-GT--TA-AGTACTC--TATATAGCTATT--CTACTG-AT-----------TGAGA--------T-TTAATAGTAA-ATG--T-G---CCA---AAAAC-CAAGGTTGTT-AT-T-TTTGGAAATGGTGGAAC-A-ATTT--TGGA-AA-ATG-TAAAATGG--ATATACA-ACAACCAGTA-TATT---GAAG-TT--GTAAA-CACA-TTTAAG--TACTTAGG--A--ATGTTG-TTTAACTTTAA-TGGAAAATTAATCC----A--AA--CGCAA-AAA-CATGTT-GCAG--AAC--AAGGGC-GG-A---AGG-CACT--TTT-TG-C----------AAT-----C-TCCAA-TACTTTGAGAAATCATTATTTTAA-TG--TTGAAACACAATGT-TCAATTTTTGATA-CTTA---TGT---
gi|10 : TGA-AAG--T-G---T-ACCTAAAAC--AAGGTTGTT-AA-T-TCTAGAAATAGTGAAA--G-ATTT--CG-AAAA-ATG-AG--ATGTGAATGTACA-A-acatacatgtaatattctttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|11 : aacatacgtggcgattctatctgagactccctcagggttataaaattaagtatgacaagcactctgtaattattttcaA-AGACTCATTTAA---TGGG-TA--GCCTCCTAT-GATATTATTT---CAGATGTACAATTT---AATTTTCAACCCAAGTTAGGTACTACGGGGGCAATATTTGCTTT-A-CCTT-TCTTATTACAA-AATA-ACTCCAAT-CCAAAAAA-AC------------------GTTTATATTGTTG-TTTCG-TTGA-TTATAAGAAAGCA-TTTGA-CT---CAGTTAACA-GAGG-AAAAC-TGT-ACA-GA---Acaataagtgccttgtagctgtaaatacatttaagaatttaggaatgttatttagccataatgga
gi|14 : TTATCTGGG--T--GTACTG-TTTTATTACAAC-GGAAAATT--C-C----G-TAAAACCCAG-AAA-CATGCTA-CAG--AAC--AA-G---GG-AGAGAAG-CGTT--AT
gi|2 : gatgttgtcagtgaatgtaaATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTGTTGATCACTAAATAATTTACAGTAGGCAGTAGCTCTTATTAGTTGATTTTCTCTGC-ATTGTTTACTTCCA-TAC----TGAACC--GA-AGACTCATTTCA---T-GG-CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTTA--GGTTTTCAACCC-AGTTAGG-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTATTACAGCAATC-ACT-CAAT-C--AAAAA-AC------------------GTTACTATTGTTGTATTTGTTTGA-TTATAAGAAAGCATTTTGATCT---CAGTTGATATGGGAAAAAAT-TGTAACAGGA---AAAGT--TAAA-ACTTACGTGATA-CA-AGGAAAGCTG--TACG-ATTGTT-CAGTTCCAATGTAT---AGTAGAT-ATTAGAA-T--TGTTGAAAG-AT-C------C-CTCTGGGCA-ATT-TC-CA-CGATTTTTTTTTGGCAA---A--CCA-----------CAT-CGGTCTTATTACAAAGGA-GAAG--GTTG------TCTCACCC-TA-TT-TTT-GTA--TTGTATGTAT-AAT--GAC-CTGAAAAT--G---ATTC------TCA-AG----AA-TGG-TAATCA-ACCAAG-C-TGATT-T---AC-T-GT----GT--TAAGTC-------TTTTTTA-TCTTGAT-GTTAT-GCTTTTGATGAC-AT----GGT-CTGCTT-GCAGA-ATATTCTGCAAT-TACA--A-TGATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTAAA-T-TG--ATACAGTTTG---AA-----TTGGG--------C-T--ATT-TCT-ATG--T-T---G-A---AAA---CACAATTA---------TTAGAAATGGTGGG---A-ACTTTCCGCACAG-ACG-AGAAATGGGAATATATA-G-GG---GAA-ACTTTTAG-AG-TGATTTAGATCAAT-TT---GTTTATTT-GG--G--ATTTTA-TTTAATTTCAA-TGGTGAAAT--TTCTTTGG-TAA--CGCAGTAAGACA-GTTAGCATA-CACCGAG-GTCTCC-A---AAGTCGTTTAATTCTG-C---CCGTTTAAAT-----C-AACAATTA----AAGCAACTG-TATTTAAA-CA--TTG-TA-CTTATTT-CCTCTTTTTGATA-CTTA----GT---TTAGTAGTTTTgttcgatttctgaacattcttttcatgcagaaacacaattt
gi|3 : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTAT-GAT--CCTAATAA-TTACAAAAG--AATAA-TCTTATTAGTTG---TTTCTGGCAAATGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CA--GCCTCTTATAGAT-TTATTT---CAGATGCGCAATTTTTTGGTTTTCAACCCAAGTTAGGTACTACGGAGGCCATATTTGCTTT-A-CATTGTCTTAT-ACAACAATCCACTCCAATTCCAAAAAA-ACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTG-TTGATTTATAAGAGAGC--TTTG-CCTTTACAGTTAATA-GCGGAAAAAT-TGT--CA-GA---AAATT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTTTCATTCC--ATGTAT---AGTATAGGATTAGAACT--TGTGTTAAA-ATGC------CTCTGGGGCCATATT-T--CA-CCATTTTTT----GAAA---A--CCA-----------TAT-CG-------------G-------T-GTTG------TCTC-CTG-TATTT-TTT-GTA--TTGTATGT-TTAAT--GACTT-GAAAA---G--AATTC---A--TCA-AA----AA-TGT-CAATCA-ACCAA--C-TGATT-T---ACTA-GT----GTTATAAGTC-------TTTTA-A-TCTTGAT-G-TAT-GT---T-ATGAC-AT----GGTGCTGCTT-GCAGACCT------CAGT-TAC-----TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TA--ATACAG-ATGA--AA-----TGGGG--------G-TTAGTTGTGACATG--T-G---C-A---AAGAC-CAAAATTGTT-GTAT-TTTAGAAATGGTGGGA--A-ACTT--TGCACAGTACA-AGAAATGGGAA-ATATA-A-GGG--GGA-AATT-TAGAAG-TA--TTAGATCATA--T---GTTTATTTGGG--GA-GCTTTATTTTAATTTCAATTGGTAAATT--TTTA---G-TAA--CGCAG-AAG-CA-GTTAGCAT--CAC--AA--TC-GC-A---AAG-CGTT--ATT-TGCC---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAATCA--TTGCTACCTTATTT-TCACCTTTTGATA-CTTA---TCT---TTTGTAGTATT
gi|5 : -T--TGTGTAAAA-AT-C------CTCTGT--TCATATT-GGGCA-CAATTTTT-----GAAC---GGATC------------TAT-TACAA----------GGA-GAAGTTGTTG------TATC-CCCCTGTTT-TTTTGTA--TTGTAT---T-AATTGGCCTTTGGAAAT--GTGAATTA---A--TCA-AA----AAATG--TAATCA-ACAAAACC-TGATT-TTAGAC-A-GT----ATTAT--GTC-------CTGTATA-TCT-GATTG-TAT-GC---TGATGAC-AT----G-TGCTGCTT-GCAGA-AT------CAGT-TAC---T-T---ATTA----CAAAAATAT-TTCGTA-GATACGCGCTGCAAAATT-TTTTATACAA-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATGTTT-GGTTT-A---AAAACTTAAAACCGTTCGT-TATTTAGAAATAGTGAGGCCA-ACTT--GCCACAG-ATGAAGAAATGGAAATATATAGA-GGACAGGACCATTAGAGAAGTTA--TTAAACCAAAGTT---GTTTACTTTGGTTGTTTTTTTT-TTTAAATTCAA-TGGTAATTT--TTT----GTTAA--CACAG-AAG-CAGTTTAGCATCACAC--AA-GTT-GCAA---AAG-CGTT--ATT-TG-CACTC---TT-AAT-----CAAACAA-TA----TAGCAATTG--A-TTAAA-CAACACG-TACCTGATTCACCTTTTTTTCATACCTTACATTGTATGTTTGTAGTATT
gi|6 : ataaaaacTTATATTGTTGTTT-CA-TAGATTT-TAAGAAAGTA-TTTGACC----CTGTTGATA-GATTTAAATTATGG-A-A-AA---AAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTAC-TAAGCATTATT-CGGGTT--ATGTATCAAAACATGA-AATA----T--TGTGTTAAA------------TCTGCAGATATGCTGT--CA-GAATTTTGT----AGAA---G--TAAGGTAGGACTTTTAC-AG-------------GGA-GATGT-GTTGCATGTATCTC-CCA-TACTT-TTT-TCG--TTATATGT-G-AAC--GATTTTGAAGTA--G--AATTT------TTA-AAGCGTGA-TGT-TGTTCC-ATT-A--C---ATT-T---ACGA-GA----ATTA-AA--C-------TTGTATG-TACTGAT-G-TAT-GC---AGATGAT-AT----GGTCATTTTT-GCTGA-A--------AGTATAC---A-TGA-ACTT----CAAAA-AAA-GT--TA-GAT--------GAA-----TT--ATATGA-ATGCACAAGTAACTGGGA--------T-CTTACAGTTA-CTA--T-T---G-AT--AAAAC-AAAAATAGCT-AT-T-TTCAGGAATGGAGGTA--A-At
gi|7 : -TACTTATTT-GTGAGTTGT-TGT-T-AAT----CCCTGAAAATTCA--AATTCTATACTTCAGAA----AA-TGGATAATCAGACCAA--CCTGATTAT---AC-AAGCCCTGGTTA-AAGTT-------CTTTGTAATCTTGAT-C-TATAGC---TAATGAC-ATTTTGGATGTTGTTTTGCAGA-AT------CAGT-TACTGTACTGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TG-AAAACT-T---ATACAG-ATG---AA-----CGGGGGGGGGGGTTGTTAATTGTGA-ATA--TTG---C-A---AAAAC-TAAAATTGTT-AT-A-TTTAGAAATGATGGAA--A-GCTT--CACACAA-ATG-AGAAATGGGAATAT--A-A-GGG--GG---GTTATAGAAA-TA--TTAGATCAAC-TT---GTTTACTTGGG--C--GTTTTA-TTTAA-TTAAATTGataaaaaatgtagaaaaatgg
gi|7 : TT--ATT-TA-A-------TTAAATTGAAGC-AACAA-TA----AAGCAACTG-TA-----------------CCTTATTG-TCCCTTTTTGATA-CTTA---TG----TTTGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
gi|9 : tacttatttgtgagttgttgttaatccctgaaaattcaaattctatacttcagaaaatggataatcagaccaacctgattatacaagccctggttaaagttctttgtaatcttgatctatagctaatgacattttggatgttgttttgcagaatcagttactgtactgaattacaaaatatgttagatacgctgaaaacttatacagatgaacgggggggggggttgttaattgtgaatattgcaaaaactaaaattgttatatttagaaatgatggaaagcttcacacaaatgagaaatgggaatataaggggggttatagaaatattagatcaacttgtttacttgggcgttTGAGA-A-G--T-G---T-ACCTAAAAC-CAAGGTCGTT-AA-T-TCTAGAAATAGTGAAA--AGATTT--CG-AAAA-ATG-AG--ATGTGAATGTACA-A-
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT
Alignments
lowQualScore : 222 11 11 1 1 1 111 11 1 11 222 1 222 2222 1 111 1 11 11 1 222 222 1 111 111 1111 1 777777777777777777 1 1 11 1111111 111111 2222222222 11 1 11 1 11 1 1 11 111 2222 11 33333333333 2222 9999999999999999999999999999999999999999999999999 222222 111 111 2222222 333333 1111 11 11 111 44444444444444444444444444 111 111111111 222222222 333333333 1111 11111 111 2222222222 2222222222 33333333333 111111 1111 22222222 11 11 11111111 22222 1 333333333333 11 1 111 11 222222222222 444444444 22222 1111 1 3333333333 222222222
lowQualScore : 111 1 1 66 88 1 5 5 5 6 333 1 6 6 7 88 3 88 77 333 3 7 1 7 3 555 5555 0 2 0 777 2 0 33 2 55 0 3 999 777 0 0 9 2 111 8 66 8 555 2 2 8888 0 333333333333333333 0 8888 1 0 0 11 8888888 1 111111 8 8888888888 0 33 0 33 99 0 0 99 2 0 0 1 33 777 0000 1 8888 11 1 55555555555 0 5555 0 2222 8 0 9999999999999999999999999999999999999999999999999 8 1 88 333333 8 77 3 6 6 999 000 000 1 0000000 444444 6 4444 6 44 6 3 55 6 6 111 33333333333333333333333333 6 3 777 6 111 1 6 888888888 6 222222222 6 444444444 4444 6 6 99 6 22222 6 666 666 6 5555555555 8888888888 5 0 66 00000000000 88 000000 2222 5 99999 4 5 1 5 5 0 5 5 99999999 66 0 8 11 3 55555555 0 5 66666 77 6 8 1 222222222222 11 8 8 5 0 999 11 777777777777 8 99 8 111111111 5 00000 8 8 7777 88 0 1 3333333333 1 8 1 8 444444444
lowQualScore : ... . . .. .. . . . . . ... . . . . .. . .. .. ... . . . . . ... .... . . . ... . . .. . .. . . ... ... . . . . ... . .. . ... . . .... . .................. . .... . . . .. ....... . ...... . .......... . .. . .. .. . . .. . . . . .. ... .... . .... .. . ........... . .... . .... . . ................................................. . . .. ...... . .. . . . ... ... ... . ....... ...... . .... . .. . . .. . . ... .......................... . . ... . ... . . ......... . ......... . ......... .... . . .. . ..... . ... ... . .......... .......... . . .. ........... .. ...... .... . ..... . . . . . . . . ........ .. . . .. . ........ . . ..... .. . . . ............ .. . . . . ... .. ............ . .. . ......... . ..... . . .... .. . . .......... . . . . .........
lowQualScore : 555 0 0 00 00 0 0 5 0 7 000 0 7 7 3 33 3 33 77 333 7 3 0 3 3 777 7777 0 5 2 555 5 0 88 5 22 0 2 222 555 2 5 8 5 000 8 55 8 888 5 0 2222 0 888888888888888888 8 4444 4 6 6 88 8888888 4 000000 0 6666666666 8 88 0 55 88 0 2 22 5 0 0 0 88 555 2222 0 5555 00 4 66666666666 8 2222 8 8888 0 8 0000000000000000000000000000000000000000000000000 0 0 88 000000 0 77 7 7 7 555 888 222 7 7777777 888888 7 2222 7 22 7 5 88 7 7 777 00000000000000000000000000 7 2 555 7 777 0 7 888888888 7 555555555 7 222222222 2222 7 7 22 7 55555 7 888 777 7 0000000000 3333333333 0 4 99 88888888888 44 555555 0000 0 77777 3 7 4 7 0 4 7 7 44444444 44 8 0 00 8 88888888 8 2 00000 00 0 0 4 222222222222 00 0 0 4 8 666 00 888888888888 0 22 0 000000000 6 00000 0 0 0000 88 6 0 6666666666 0 0 0 0 666666666
consensus : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCT---CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGCAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
Reference ( family-917 ) : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCT---CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGCAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAATGAC--GTAAATAA-TTACAGAGG--TATTTCTATTGTTAGCTG---TTTTGGGAAACTATTCAC---CAGTGCT--TTGAA---TAACAGA---ATTTTAGAGTGGGACAAGG------AG-AACACTATTTTGACAGATGCACAGTTT---GTTTTCCGACCAGGGTTATCAACAGTTGATGCAATATTTGTATT-A-CAATCTTTAATT-TAGAAA---ACTCTGA----AAAAAACAC------------------GTTTATATTGTTGTTTT-G-TAGATTT-TCAAAAAGCG-TTTGAC-T---CTATTAATA--TGTATAAAT-TAT-----GGTTTAAATTGTTGAATGTTT---GTATT-CA-AGGGAAACTGCTTAAA-GTTGTC-CAGGCT--TTGTAC---AGCA--G-TGTGAAA-TGCTGTGCAAAATAT-GGTGGGGCTTTAAGCGAATACT-T--AAGCAAT---------GAAATGGG--TCT-----------TATGCA-------------GGACGAAGT-GTTA------TCAC-CAT-TACTT-TTT-GCT--CTTTATGT-C-AAT--AATTTTGAGA-T--A--AATTTT--A--TCC-GG----AA-CAA-TTGTCC-ATCTA--T-TGAAT-T---AC-A----------ATTAATCAACATATTTTTATG-----AAT-G-TAT-GC---TGATGATTAT----A--------T--CAGA-GT------CAG------------G-GTTA----CAAAG-CAT-GT--TA-AGTACTC--TATATAGCTATT--CTACTG-AT-----------TGAGA--------T-TTAATAGTAA-ATG--T-G---CCA---AAAAC-CAAGGTTGTT-AT-T-TTTGGAAATGGTGGAAC-A-ATTT--TGGA-AA-ATG-TAAAATGG--ATATACA-ACAACCAGTA-TATT---GAAG-TT--GTAAA-CACA-TTTAAG--TACTTAGG--A--ATGTTG-TTTAACTTTAA-TGGAAAATTAATCC----A--AA--CGCAA-AAA-CATGTT-GCAG--AAC--AAGGGC-GG-A---AGG-CACT--TTT-TG-C----------AAT-----C-TCCAA-TACTTTGAGAAATCATTATTTTAA-TG--TTGAAACACAATGT-TCAATTTTTGATA-CTTA---TGT---
gi|10 : TGA-AAG--T-G---T-ACCTAAAAC--AAGGTTGTT-AA-T-TCTAGAAATAGTGAAA--G-ATTT--CG-AAAA-ATG-AG--ATGTGAATGTACA-A-acatacatgtaatattctttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|11 : aacatacgtggcgattctatctgagactccctcagggttataaaattaagtatgacaagcactctgtaattattttcaA-AGACTCATTTAA---TGGG-TA--GCCTCCTAT-GATATTATTT---CAGATGTACAATTT---AATTTTCAACCCAAGTTAGGTACTACGGGGGCAATATTTGCTTT-A-CCTT-TCTTATTACAA-AATA-ACTCCAAT-CCAAAAAA-AC------------------GTTTATATTGTTG-TTTCG-TTGA-TTATAAGAAAGCA-TTTGA-CT---CAGTTAACA-GAGG-AAAAC-TGT-ACA-GA---Acaataagtgccttgtagctgtaaatacatttaagaatttaggaatgttatttagccataatgga
gi|14 : TTATCTGGG--T--GTACTG-TTTTATTACAAC-GGAAAATT--C-C----G-TAAAACCCAG-AAA-CATGCTA-CAG--AAC--AA-G---GG-AGAGAAG-CGTT--AT
gi|2 : gatgttgtcagtgaatgtaaATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTGTTGATCACTAAATAATTTACAGTAGGCAGTAGCTCTTATTAGTTGATTTTCTCTGC-ATTGTTTACTTCCA-TAC----TGAACC--GA-AGACTCATTTCA---T-GG-CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTTA--GGTTTTCAACCC-AGTTAGG-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTATTACAGCAATC-ACT-CAAT-C--AAAAA-AC------------------GTTACTATTGTTGTATTTGTTTGA-TTATAAGAAAGCATTTTGATCT---CAGTTGATATGGGAAAAAAT-TGTAACAGGA---AAAGT--TAAA-ACTTACGTGATA-CA-AGGAAAGCTG--TACG-ATTGTT-CAGTTCCAATGTAT---AGTAGAT-ATTAGAA-T--TGTTGAAAG-AT-C------C-CTCTGGGCA-ATT-TC-CA-CGATTTTTTTTTGGCAA---A--CCA-----------CAT-CGGTCTTATTACAAAGGA-GAAG--GTTG------TCTCACCC-TA-TT-TTT-GTA--TTGTATGTAT-AAT--GAC-CTGAAAAT--G---ATTC------TCA-AG----AA-TGG-TAATCA-ACCAAG-C-TGATT-T---AC-T-GT----GT--TAAGTC-------TTTTTTA-TCTTGAT-GTTAT-GCTTTTGATGAC-AT----GGT-CTGCTT-GCAGA-ATATTCTGCAAT-TACA--A-TGATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTAAA-T-TG--ATACAGTTTG---AA-----TTGGG--------C-T--ATT-TCT-ATG--T-T---G-A---AAA---CACAATTA---------TTAGAAATGGTGGG---A-ACTTTCCGCACAG-ACG-AGAAATGGGAATATATA-G-GG---GAA-ACTTTTAG-AG-TGATTTAGATCAAT-TT---GTTTATTT-GG--G--ATTTTA-TTTAATTTCAA-TGGTGAAAT--TTCTTTGG-TAA--CGCAGTAAGACA-GTTAGCATA-CACCGAG-GTCTCC-A---AAGTCGTTTAATTCTG-C---CCGTTTAAAT-----C-AACAATTA----AAGCAACTG-TATTTAAA-CA--TTG-TA-CTTATTT-CCTCTTTTTGATA-CTTA----GT---TTAGTAGTTTTgttcgatttctgaacattcttttcatgcagaaacacaattt
gi|3 : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTAT-GAT--CCTAATAA-TTACAAAAG--AATAA-TCTTATTAGTTG---TTTCTGGCAAATGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CA--GCCTCTTATAGAT-TTATTT---CAGATGCGCAATTTTTTGGTTTTCAACCCAAGTTAGGTACTACGGAGGCCATATTTGCTTT-A-CATTGTCTTAT-ACAACAATCCACTCCAATTCCAAAAAA-ACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTG-TTGATTTATAAGAGAGC--TTTG-CCTTTACAGTTAATA-GCGGAAAAAT-TGT--CA-GA---AAATT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTTTCATTCC--ATGTAT---AGTATAGGATTAGAACT--TGTGTTAAA-ATGC------CTCTGGGGCCATATT-T--CA-CCATTTTTT----GAAA---A--CCA-----------TAT-CG-------------G-------T-GTTG------TCTC-CTG-TATTT-TTT-GTA--TTGTATGT-TTAAT--GACTT-GAAAA---G--AATTC---A--TCA-AA----AA-TGT-CAATCA-ACCAA--C-TGATT-T---ACTA-GT----GTTATAAGTC-------TTTTA-A-TCTTGAT-G-TAT-GT---T-ATGAC-AT----GGTGCTGCTT-GCAGACCT------CAGT-TAC-----TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TA--ATACAG-ATGA--AA-----TGGGG--------G-TTAGTTGTGACATG--T-G---C-A---AAGAC-CAAAATTGTT-GTAT-TTTAGAAATGGTGGGA--A-ACTT--TGCACAGTACA-AGAAATGGGAA-ATATA-A-GGG--GGA-AATT-TAGAAG-TA--TTAGATCATA--T---GTTTATTTGGG--GA-GCTTTATTTTAATTTCAATTGGTAAATT--TTTA---G-TAA--CGCAG-AAG-CA-GTTAGCAT--CAC--AA--TC-GC-A---AAG-CGTT--ATT-TGCC---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAATCA--TTGCTACCTTATTT-TCACCTTTTGATA-CTTA---TCT---TTTGTAGTATT
gi|5 : -T--TGTGTAAAA-AT-C------CTCTGT--TCATATT-GGGCA-CAATTTTT-----GAAC---GGATC------------TAT-TACAA----------GGA-GAAGTTGTTG------TATC-CCCCTGTTT-TTTTGTA--TTGTAT---T-AATTGGCCTTTGGAAAT--GTGAATTA---A--TCA-AA----AAATG--TAATCA-ACAAAACC-TGATT-TTAGAC-A-GT----ATTAT--GTC-------CTGTATA-TCT-GATTG-TAT-GC---TGATGAC-AT----G-TGCTGCTT-GCAGA-AT------CAGT-TAC---T-T---ATTA----CAAAAATAT-TTCGTA-GATACGCGCTGCAAAATT-TTTTATACAA-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATGTTT-GGTTT-A---AAAACTTAAAACCGTTCGT-TATTTAGAAATAGTGAGGCCA-ACTT--GCCACAG-ATGAAGAAATGGAAATATATAGA-GGACAGGACCATTAGAGAAGTTA--TTAAACCAAAGTT---GTTTACTTTGGTTGTTTTTTTT-TTTAAATTCAA-TGGTAATTT--TTT----GTTAA--CACAG-AAG-CAGTTTAGCATCACAC--AA-GTT-GCAA---AAG-CGTT--ATT-TG-CACTC---TT-AAT-----CAAACAA-TA----TAGCAATTG--A-TTAAA-CAACACG-TACCTGATTCACCTTTTTTTCATACCTTACATTGTATGTTTGTAGTATT
gi|6 : ataaaaacTTATATTGTTGTTT-CA-TAGATTT-TAAGAAAGTA-TTTGACC----CTGTTGATA-GATTTAAATTATGG-A-A-AA---AAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTAC-TAAGCATTATT-CGGGTT--ATGTATCAAAACATGA-AATA----T--TGTGTTAAA------------TCTGCAGATATGCTGT--CA-GAATTTTGT----AGAA---G--TAAGGTAGGACTTTTAC-AG-------------GGA-GATGT-GTTGCATGTATCTC-CCA-TACTT-TTT-TCG--TTATATGT-G-AAC--GATTTTGAAGTA--G--AATTT------TTA-AAGCGTGA-TGT-TGTTCC-ATT-A--C---ATT-T---ACGA-GA----ATTA-AA--C-------TTGTATG-TACTGAT-G-TAT-GC---AGATGAT-AT----GGTCATTTTT-GCTGA-A--------AGTATAC---A-TGA-ACTT----CAAAA-AAA-GT--TA-GAT--------GAA-----TT--ATATGA-ATGCACAAGTAACTGGGA--------T-CTTACAGTTA-CTA--T-T---G-AT--AAAAC-AAAAATAGCT-AT-T-TTCAGGAATGGAGGTA--A-At
gi|7 : -TACTTATTT-GTGAGTTGT-TGT-T-AAT----CCCTGAAAATTCA--AATTCTATACTTCAGAA----AA-TGGATAATCAGACCAA--CCTGATTAT---AC-AAGCCCTGGTTA-AAGTT-------CTTTGTAATCTTGAT-C-TATAGC---TAATGAC-ATTTTGGATGTTGTTTTGCAGA-AT------CAGT-TACTGTACTGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TG-AAAACT-T---ATACAG-ATG---AA-----CGGGGGGGGGGGTTGTTAATTGTGA-ATA--TTG---C-A---AAAAC-TAAAATTGTT-AT-A-TTTAGAAATGATGGAA--A-GCTT--CACACAA-ATG-AGAAATGGGAATAT--A-A-GGG--GG---GTTATAGAAA-TA--TTAGATCAAC-TT---GTTTACTTGGG--C--GTTTTA-TTTAA-TTAAATTGataaaaaatgtagaaaaatgg
gi|7 : TT--ATT-TA-A-------TTAAATTGAAGC-AACAA-TA----AAGCAACTG-TA-----------------CCTTATTG-TCCCTTTTTGATA-CTTA---TG----TTTGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
gi|9 : tacttatttgtgagttgttgttaatccctgaaaattcaaattctatacttcagaaaatggataatcagaccaacctgattatacaagccctggttaaagttctttgtaatcttgatctatagctaatgacattttggatgttgttttgcagaatcagttactgtactgaattacaaaatatgttagatacgctgaaaacttatacagatgaacgggggggggggttgttaattgtgaatattgcaaaaactaaaattgttatatttagaaatgatggaaagcttcacacaaatgagaaatgggaatataaggggggttatagaaatattagatcaacttgtttacttgggcgttTGAGA-A-G--T-G---T-ACCTAAAAC-CAAGGTCGTT-AA-T-TCTAGAAATAGTGAAA--AGATTT--CG-AAAA-ATG-AG--ATGTGAATGTACA-A-
blockSeqs : . A C TC GT A . . . G CAT T G C T CA T GC GC ATT C A T T . TGT CCCT . C . G . . C CC A A T TTT A T C CAC G TA C TCC C A TTCC . CCCCCCCAAACACACAAC TTGT T T A AT CCTTTA A TGGGAA A AACAGGA . . AC AA G TC C C T T CA CAA TAGG T GAAC . A ATGC TGGG GGG . TTTTTGGCAAACCACATCGGTCTTATTACAAA . A TT CATGTA A CC T A T GAG AT TGG T ATGTG TATACT G GCGT A GA G A AC C A TAG AAGCCCTGGTTAAAGTT A T GT A TTT G . TTTGGATGT T ATATTCTG A TGTACTGA CGTG A A CG C CGCGC G CT TTT T CACAAGTAAC GGGGGGGTTG C TT GTACCT TT CGTTA GGCC G TCCGC A T T A A G . ACAGGACC TT T AT T AAGTT G TTGTT AT T C A TTCTTTGGT AA T A T TCA CG GGGAGAG T TA C CCCGT A TGAAG A T . T T A TCATTGCT T A T C CATTGTATG
blockSeqs : G T G G C . . . . A . T . A T . . CC . C . G . . C CT . A . A A T C A G TA C TA C A TCC . . TCG T T A A ATCT A GCGGA . ACAGA . . AC A . C C . . T . . GAT T GAA . T ATC GGGC TC . GTAGAAGTAAGGTAGGACTTTTACAG . A T . . C T . . A TT G T ATTCA A . . . G . A G . . . TAGTGTTATAAGTC . T TG . . G . GGTGC . CCT . AATGAT . . . . . CGC G TT G . AAA C . . GGTTTA C GTAT AA . TGC C . C . A . . GGGAA AG . . T ATTT G GA G T T T TTTAGT . . . G TA . GTCTCCA . . . CACTC A . . . . T T A CAACACGT T . A . TCT
blockSeqs : . C . . . . C . . . . . . . . A . A . TC . A TC . . TTG T . A A ACT A GATTT . CAGA . . AT . . . A . . G . . TGA A . . A ATC CAGA GT . TGAACGGATCTATTACAA . T T . . G C . . A T G T ATG A . . . T . A . . . . TGTGTTAAGTC . T G . . G . GGTCA . AT . ATGA . . . . . CGC C CT A . AA G . . GTACCT C AAT GA . GCC C . C . A . . GAAA AT . . C ACTT T T A T T T TTTGTT . . . . G . GTTGCAA . . . CCC A . . . . T . A CATTGT G . T . GT
blockSeqs : CA A . . . ACC T GAGG . AAAA . T . TT T . TTGAAAACCATATCG . . . . . A C . . A G G C TAG . . . . T . A . . . . AGTATTATGTC . T G . . A . GGTC . AT . TGA . . . . . . G T T . AA T . . TGAT A ATT TA . CAC C . T . A . . GGG T . . T TAT G G T A . T CCGT . . . . T . TCGCA . . . A . . . . . . . . . T . C . TG
blockSeqs : . . . G T . . AG . . . . . . . . . . . GAGAATTAAAC . . C . . . . GTGC . A . TT . . . . . . . . . . AA T . . TGCA T ATA AA . CG C . T . . . . . C A . . .
blockSeqs : . . TGA C AAT AA . CG A . T . . . .
blockSeqs : . . GCA . . G .
blockSeqCons : TCG* GNGGA* ACAGA***** ** ATC******** N*** TTGAAGACTATTACAG********************************* ATCG*** A***** NGTATTAAGTC*************** GGTGC**** ATGA***** CT* AA******** GTAC******* AA** GGGA**** AT ANTT**** CCC****** **** T* CACGT***** TN*******
originalCons : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCT---CAGTTAATA-GNGNAAAAAT-TGT-ACA-GA---AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------CTCTGNGGNCATATT-T--CA-CAATTTTTT----GAAA---G--TCA-----------TAT-CG-------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAAT--G--AATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-GC----GTTATAAGTC-------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-AT----GGTGCTGCTT-GCAGA-AT------CAGT-TAC---A-TGA-ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATG---AA-----TGGGG--------T-TTAATTGTGA-ATG--T-G---C-A---AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGGA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGCAGGA-NATTATAGAAG-TA--TTAGATCAAA-TT---GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TG-C---C---TTAAAT-----C-AACAA-TA----AAGCAACTG-TATTTAAA-CG--TTG-TACCTTATTT-TCNCTTTTTGATA-CTTA---TGT---TTTGTAGTATT
finalCons : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGAT--CTAAATAA-TTACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-A-CATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCG-TTGATTTATAAGAAAGCA-TTTGACCT---CAGTTAATAGNGGA-AAAAT-TGTACAGA-----AAATT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAAATC--------CTCTGNGGNCATATTN---CA-CAATTTTTTGAAGACTATTACAG---------------------------------GGA-GAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGAAAATCG---AATTCA-----TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---ACNGTATTAAGTC---------------TTTTATA-TCTTGAT-G-TAT-GC---TGATGAC-ATGGTGC----TGCTT-GCAGA-AT------CAGT-TACATGA-----ATTA----CAAAA-TAT-GT--TA-GATACGC--TGGAAAACT-TT--ATACAG-ATGAA--------TGGGG--------T-TTAATTGTGA-ATG--TGTAC-------AAAAC-CAAAATTGTT-AT-T-TTTAGAAATGGTGGAA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACA-A-GGGGGA----ATTATAGAAG-TA--TTAGATCAANTT----GTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TGCCC------TTAAAT-----C-AACAA-TA----AAGCAACTGT-ATTTAAACACGT-----ACCTTATTT-TCNCTTTTTGATA-CTTATN-------TTTGTAGTATT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT
Alignments
lowQualScore : 222 11 11 1 1 1 111 11 1 11 222 1 22222222222 1 111 11 11 11 1 222 222 1 1 1 111 1111 1 777777777777777777 11 1111111 3333333333 2222222222 11111 1 11 1 11 1 1 11 111 2222 11 3333333333333 11111 222 99999999999999999999999999999999999 11 222222 111 111 1111 33333333333333 1111 11 11 111 333333333333 2222222 1111 111111111 22222222 333333333 1111 11111 111 333333333333 2222222222 333333333 1111 11 22222222222 11 111 22222 1 333333333333 11 1 111 11 222222222222 11 1 111111 1111 666666666666666666666666 22222222 1111111
lowQualScore : 111 1 1 66 88 1 5 5 5 6 333 1 6 6 7 88 3 88 77 333 3 88 7 3 77777777777 0 2 0 777 22 33 2 55 0 3 999 777 0 0 9 2 0 0 8 66 8 555 88 8888 0 333333333333333333 0 77 99 0 11 3 8 8888888 1 0000000000 6666666666 55555 0 33 99 0 0 99 2 0 0 1 33 777 0000 1 8888 11 1 8888888888888 66666 3 000 8 0 33333333333333333333333333333333333 1 0 11 8 33 1 88 333333 8 77 3 6 6 999 000 000 7 3333 44444444444444 6 4444 6 44 6 3 55 6 6 111 777777777777 99 1 1111111 6 3 6 6 6 2222 6 888888888 6 55555555 6 444444444 4444 6 6 99 6 22222 6 666 666 000000000000 8888888888 1 5 0 333333333 3333 2 1 5 5 5 5 11 5 99999 4 5 1 5 5 0 88888888888 1 0 8 11 3 666 1 5 66666 77 6 8 1 222222222222 11 8 8 5 0 999 11 777777777777 8 11 0 999999 4 8 8 7777 88 0 222222222222222222222222 0 8 1 99999999 99 9999999
lowQualScore : ... . . .. .. . . . . . ... . . . . .. . .. .. ... . .. . . ........... . . . ... .. .. . .. . . ... ... . . . . . . . .. . ... .. .... . .................. . .. .. . .. . . ....... . .......... .......... ..... . .. .. . . .. . . . . .. ... .... . .... .. . ............. ..... . ... . . ................................... . . .. . .. . .. ...... . .. . . . ... ... ... . .... .............. . .... . .. . . .. . . ... ............ .. . ....... . . . . . .... . ......... . ........ . ......... .... . . .. . ..... . ... ... ............ .......... . . . ......... .... . . . . . . .. . ..... . . . . . . ........... . . . .. . ... . . ..... .. . . . ............ .. . . . . ... .. ............ . .. . ...... . . . .... .. . ........................ . . . ........ .. .......
lowQualScore : 555 0 0 00 00 0 0 5 0 7 000 0 7 7 3 33 3 33 77 333 7 33 3 3 77777777777 0 5 2 555 55 88 5 22 0 2 222 555 2 5 8 5 0 0 8 55 8 888 55 2222 0 888888888888888888 8 22 44 8 44 8 0 8888888 4 8888888888 6666666666 55555 0 55 88 0 2 22 5 0 0 0 88 555 2222 0 5555 00 4 6666666666666 22222 8 000 0 8 44444444444444444444444444444444444 0 8 00 0 88 0 88 000000 0 77 7 7 7 555 888 222 3 3333 22222222222222 7 2222 7 22 7 5 88 7 7 777 888888888888 22 0 7777777 7 2 7 7 7 7777 7 888888888 7 00000000 7 222222222 2222 7 7 22 7 55555 7 888 777 000000000000 3333333333 4 0 4 555555555 2222 8 0 0 0 0 0 99 0 77777 3 7 4 7 0 4 22222222222 4 8 0 00 8 888 0 2 00000 00 0 0 4 222222222222 00 0 0 4 8 666 00 888888888888 0 00 0 888888 0 0 0 0000 88 8 000000000000000000000000 6 0 0 00000000 00 0000000
consensus : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGATC--TAAATAATT-ACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-AC-ATTGTCTTATTACAGCAATC-ACTCCAAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCGTT-GATTTATAAGAAAGCATTT-GACCT---CAGTTAATA-GNGGAA---AAATTGTA-CAG-A---AAA-TT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------C-TCTGNGGNNATATTN--CA-CAATTTTTT----GAA--G---------A-C-----------TATTA--CAG-GGAGAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGA---AAAT--GAATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-A-------GTATTA--AGTC-------TTTTATA-TCTTGAT-GT-AT-GCT---GATGAC-AT----GGTGCTGCTT-GCAGAA-T------CAGT-TAC---A-TGA-ATTACA----AAA-TATG-T--TA-GATACGC--TGGAAAACT-TT--ATACAGAT-G---AA-----TGGGG--------T-TTAATTGTGA-ATGT---GTNC--AAAAC-C--AAGGTCGTT-AT-T-TTTAGAAATGGTGG-AA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACAAGGG---GGA--GT-TATAGAAG-TA--TTAGATC-A-ATTTGTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TGCCC--T-TAAATC-AACAA-TA----AAGCAACTG-TATTT--------A--AA-CATCG-TACCTTATTT-TCNCTTTTTGATACT--------TAT-GT---T---TGTAGTATT
Reference ( family-917 ) : ATATCATTTTTAAGATCGCATCTTANTNATNCTGGGTTTTTTCCCNACTCAATGGTCTTTATGCGTGTTATTGTACCTGTTTTCATCAAAAAGGNTGATCATTATTGATC--TAAATAATT-ACAGAAG--AATANCTCTTATTAGTTG---TTTTCGGCAANTGTTTACTTCCA-TACT--TTGAACC-TAA-AGACTCATTTCA---TGGG-CA--GCCTCCTAT-GATATTATTTT--CAGATGCGCAATTT---GGTTTTCAACCCGAGTTAGGTACTACGGAGGCAATATTTGCTTT-AC-ATTGTCTTATTACAGCAATC-ACTCCGAT-CCAAAAAA-AC------------------GTTTATATTGTTGTTTTCGTT-GATTTATAAGAAAGCATTT-GACCT---CAGTTAATA-GNGGAA---AAATTGTA-CAG-A---AAA-TT--TAAA-ACTTACGGTATA-CA-AGGGAAGCTGCCTACG-ATTGTT-CAGNCC--ATGTAT---AGCATAG-ANTAGAA-T--TGTGTAAAA-AT-C------C-TCTGNGGNCATATTN--CA-CAATTTTTT----GAA--G---------A-C-----------TATTA--CAG-GGAGAAGT-GTTG------TCTC-CCN-TACTT-TTT-GTA--TTGTATGT-T-AAT--GACTTTGA---AAAT-CGAATTC---A--TCA-AA----AA-TGN-TAATCA-ACCAA--C-TGATT-T---AC-N-------GTATTA--AGTC-------TTTTATA-TCTTGAT-GT-AT-GCT---GATGAC-AT----GGTGCTGCTT-GCAGAA-T------CAGT-TAC---A-TGA-ATTACA----AAA-TATG-T--TA-GATACGC--TGGAAAACT-TT--ATACAGAT-G---AA-----TGGGG--------T-TTAATTGTGA-ATGT---GTAC--AAAAC-C--AAAATTGTT-AT-T-TTTAGAAATGGTGG-AA--A-ACTT--CGCACAG-ACG-AGAAATGGGAATATACAAGGG---GGA--AT-TATAGAAG-TA--TTAGATC-A-ANTTGTTTACTTGGG--G--GTTTTA-TTTAATTTCAATTGGTAAATT--TTC----G-TAA--CGCAG-AAG-CATGTTAGCAT--CAC--AA-GTC-GC-A---AAG-CGTT--ATT-TGCCC--T-TAAATC-AACAA-TA----AAGCAACTG-TATTT--------A--AA-CA-CG-TACCTTATTT-TCNCTTTTTGATACT--------TAT-NT---T---TGTAGTATT
gi|1 : ATTGTACCT--TTTCA-CAAAAAGGAT-AT-ATTAATGACG--TAAATAATT-ACAGAGG--TATTTCTATTGTTAGCTG---TTTTGGGAAACTATTCAC---CAGTGCT--TTGAA---TAACAGA---ATTTTAGAGTGGGACAAGG------AG-AACACTATTTTGACAGATGCACAGTTT---GTTTTCCGACCAGGGTTATCAACAGTTGATGCAATATTTGTATT-AC-AATCTTTAATT-TAGAAA---ACTCTGA----AAAAAACAC------------------GTTTATATTGTTGTTTT-GTA-GATTT-TCAAAAAGCGTTT-GAC-T---CTATTAATA--TGTAT---AAATTAT----G-GTTTAAA-TTGTTGAATGTTT---GTATT-CA-AGGGAAACTGCTTAAA-GTTGTC-CAGGCT--TTGTAC---AGCA--G-TGTGAAA-TGCTGTGCAAAATAT-GGTGGGGC-TTTAAGCGAATACTT--AAGCAAT---------GAAATG---------G-G-----------TCTTATGCAG-GACGAAGT-GTTA------TCAC-CAT-TACTT-TTT-GCT--CTTTATGT-C-AAT--AATTTTGAGATAAAT-----TTT---A--TCC-GG----AA-CAA-TTGTCC-ATCTA--T-TGAAT-T---AC-A---------ATTA--A-TCAACATATTTTTATG-----AAT-GT-AT-GCT---GATGATTAT----A--------T--CAGAG-T------CAG------------G-GTTACA----AAG-CATG-T--TA-AGTACTC--TATATAGCTATT--CTACTGAT------------TGAGA--------T-TTAATAGTAA-ATGT---GCCA--AAAAC-C--AAGGTTGTT-AT-T-TTTGGAAATGGTGG-AAC-A-ATTT--TGGA-AA-ATG-TAAAATGG--ATATACAACAA---CCA--GTATATTGAAG-TT--GTAAA-C-ACATTTAAGTACTTAGG--A--ATGTTG-TTTAACTTTAA-TGGAAAATTAATCC----A--AA--CGCAA-AAA-CATGTT-GCAG--AAC--AAGGGC-GG-A---AGG-CACT--TTT-TGC--------AATC-TCCAA-TACTTTGAGAAATCATTATTTTAATGTTGA--AA-CA-CA-------ATGT-TCAATTTTTGATACT--------TAT-GTACATACATGTAATATT
gi|10 : TGA-AAGT---GTACCTAAAAC----AAGGTTGTT-AA-T-TCTAGAAATAGTGA-AA--G-ATTT--CG-AAAA-ATG-AG--ATGTGAATGTACAActttcctatgcatgtgaaatttgggggtttcataaagcaccggacattgaaaaggtgcatctgtctttttgtaacaatatgttaggggtaaataaaagagctaacaatagcatggtgtattgtgaactttgtagattcccgctttacataagaagaaaattgaaaatttttaaattctggttgaaaattaaaaccacaaataattgtattttgaaagaatgttatgaaaatatgattgtaaacaatgatggctggattgcaaatgtgaaagtgaattgtcaagtatcagtttagaatatttgttcgacgagttgtgtgtaaatcaagtttaaatttacaagattattga
gi|11 : aacatacgtggcgattctatctgagactccctcagggttataaaattaagtatgacaagcactctgtaattattttcaA-AGACTCATTTAA---TGGG-TA--GCCTCCTAT-GATATTATTT---CAGATGTACAATTT---AATTTTCAACCCAAGTTAGGTACTACGGGGGCAATATTTGCTTT-AC-CTT-TCTTATTACAA-AATA-ACTCCAAT-CCAAAAAA-AC------------------GTTTATATTGTTG-TTTCGTT-GA-TTATAAGAAAGCATTT-GA-CT---CAGTTAACA-GAGG-A---AAACTGTA-CAG-A---Acaataagtgccttgtagctgtaaatacatttaagaatttaggaatgttatttagccataatgga
gi|14 : TTATCTGGG--T--GTACTG-TTTTATTACAAC-GGAAAATT--C-C----G-TAAAACCCAG-AAA-CATGCTA-CAG--AAC--AA-G---GG-AGAGAAG-CGTT--AT
gi|2 : gatgttgtcagtgaatgtaaATATCATTTTTAAGATCGCATCTTATTGATG-TGG--TTTTTCCCTACTCAATGGTCTTTATGCGTGTTATTGTGCCTGTTTT--TCAAAAAGGTTGATCATTGTTGATCACTAAATAATTTACAGTAGGCAGTAGCTCTTATTAGTTGATTTTCTCTGCA-TTGTTTACTTCCA-TACT----GAACC--GA-AGACTCATTTCA---TGG--CA--GCCT--TAT-GATATTATTTT--CAGATGCGCAATTTA--GGTTTTCAACCC-AGTTAGG-A-TACGGAGGCAATATTTGCTTTCACCATTGTCTTATTACAGCAATC-ACTC-AAT-C--AAAAA-AC------------------GTTACTATTGTTGTATTTGTTTGATT-ATAAGAAAGCATTTTGATCT---CAGTTGATATGGGAAA---AAATTGTAACAGGA---AAA-GT--TAAA-ACTTACGTGATA-CA-AGGAAAGCTG--TACG-ATTGTT-CAGTTCCAATGTAT---AGTAGAT-ATTAGAA-T--TGTTGAAAG-AT-C------CCTCTG-GGCAAT-TTC--CA-CGATTTTTTTTTGGCA--A---------A-CCACATCGGTCTTATTA--CAAAGGAGAAG--GTTG------TCTCACCC-TA-TT-TTT-GTA--TTGTATGTAT-AAT--GACCT-GA---AAAT---GATTC------TCA-AG----AA-TGG-TAATCA-ACCAAG-C-TGATT-T---AC-T-------GTGTTA--AGTC-------TTTTTTA-TCTTGAT-GTTAT-GCTTTTGATGAC-AT----GGT-CTGCTT-GCAGAA-TATTCTGCAAT-TAC---AATGATAGTACGTGCGAAA-TGTAAT--TACGATA-----TGGTAAA-T-TG--ATACAGTTTG---AA-----TTGGG--------C-T--ATTTC----TAT---GTTG--AAAACAC--AA-----TT-AT-T----AGAAATGGTGG-GA--A--CTTTCCGCACAG-ACG-AGAAATGGGAATATATAGGGG---AAA--CT-TTTAG-AG-TGATTTAGATC-A-ATTTGTTTATTT-GG--G--ATTTTA-TTTAATTTCAA-TGGTGAAAT--TTCTTTGG-TAA--CGCAGTAAGACA-GTTAGCATA-CACCGAG-GTCTCC-A---AAGTCGTTTAATTCTGCCCGTT-TAAATC-AACAATTA----AAGCAACTG-TATTT--------A--AA-CATTG-TA-CTTATTT-CCTCTTTTTGATACT--------TAG-TT---T---AGTAGTTTTgttcgatttctgaacattcttttcatgcagaaacacaattt
gi|3 : ATATCATTTT---AATCGCATCTTAATCATTCTGGGTTTTTTCCCAACT-AATGGTCTT-ATGC-TGTTATTGTACCTGTTTTCATCAAAAAGGGTGATCATTAT-GATC--CTAATAATT-ACAAAAG--AATAA-TCTTATTAGTTG---TTTCTGGCAAATGTTTACTTCCA-TACTGTTTAAACCCTAA-GGACTCATTTCA---TGGG-CA--GCCTCTTATAGAT-TTATTT---CAGATGCGCAATTTTTTGGTTTTCAACCCAAGTTAGGTACTACGGAGGCCATATTTGCTTT-AC-ATTGTCTTAT-ACAACAATCCACTCCAATTCCAAAAAA-ACCCCCCCCAAACACACAACGTTTATATTGTTGTTTTTGTT-GATTTATAAGAGAGC-TTT-G-CCTTTACAGTTAATA-GCGGAA---AAATTGT--CAG-A---AAA-TT--TAAA-ACTTACGGTATAACA-AGGGAAGCTGTCTACG-ATTGTTTCATTCC--ATGTAT---AGTATAGGATTAGAACT--TGTGTTAAA-ATGC------C-TCTGGGGCCATATTT--CA-CCATTTTTT----GAA--A---------A-C-----------CAT-A--TCG-G------T-GTTG------TCTC-CTG-TATTT-TTT-GTA--TTGTATGT-TTAAT--GACTT-GA---AAA---GAATTC---A--TCA-AA----AA-TGT-CAATCA-ACCAA--C-TGATT-T---AC-TA------GTGTTATAAGTC-------TTTTA-A-TCTTGAT-GT-AT-GTT----ATGAC-AT----GGTGCTGCTT-GCAGACCT------CAGT-TAC-----TGA-ATTACA----AAA-TATG-T--TA-GATACGC--TGGAAAACT-TA--ATACAGAT-G---AAA----TGGGG--------G-TTAGTTGTGACATGT---GCA---AAGAC-C--AAAATTGTT-GTAT-TTTAGAAATGGTGG-GA--A-ACTT--TGCACAGTACA-AGAAATGGGAA-ATATAAGGG---GGA--AA-TTTAGAAG-TA--TTAGATC---ATATGTTTATTTGGG--GA-GCTTTATTTTAATTTCAATTGGTAAATT--TTTA---G-TAA--CGCAG-AAG-CA-GTTAGCAT--CAC--AA--TC-GC-A---AAG-CGTT--ATT-TGCCC--T-TAAATC-AACAA-TA----AAGCAACTG-TATTT--------A--AATCATTGCTACCTTATTT-TCACCTTTTGATACT--------TATCTT---T---TGTAGTATT
gi|5 : -T--TGTGTAAAA-AT-C------C-TCTGT--TCATATTGGGCA-CAATTTTT-----GAACGG---------ATC-----------TATTA--CAA-GGAGAAGTTGTTG------TATC-CCCCTGTTT-TTTTGTA--TTGTAT---T-AATTGGCCTTTGG---AAATGTGAATTA---A--TCA-AA----AAATG--TAATCA-ACAAAACC-TGATT-TTAGAC-A-------GTATTA--TGTC-------CTGTATA-TCT-GATTGT-AT-GCT---GATGAC-AT----G-TGCTGCTT-GCAGAA-T------CAGT-TAC---T-T---ATTACA----AAAATATT-TCGTA-GATACGCGCTGCAAAATT-TTTTATACAAAT-G---AA-----TGGGG--------T-TTAATTGTGA-ATGTTTGGTTT--AAAAA-CTTAAAACCGTTCGT-TATTTAGAAATAGTGA-GGCCA-ACTT--GCCACAG-ATGAAGAAATGGAAATATATAGAGGACAGGACCAT-TAGAGAAGTTA--TTAAACCAA-AGTTGTTTACTTTGGTTGTTTTTTTT-TTTAAATTCAA-TGGTAATTT--TTT----GTTAA--CACAG-AAG-CAGTTTAGCATCACAC--AA-GTT-GCAA---AAG-CGTT--ATT-TGCAC--TCTTAATCAAACAA-TA----TAGCAATTG--ATTA--------AACAA-CA-CG-TACCTGATTCACCTTTTTTTCATACCTTACATTGTAT-GT---T---TGTAGTATT
gi|6 : ataaaaacTTATATTGTTGTTT-CATA-GATTT-TAAGAAAGTATTT-GACC----CTGTTGATA-G----ATTTAAATTATG-GAA-A---AAAACT--CAGC-ACGTATGGTAT--CAGAGGTAAATTAC-TAAGCATTATT-CGGGTT--ATGTATCAAAACATGA-AATA----T--TGTGTTAAA-------------TCTGCAGATATGCTGT-CA-GAATTTTGTA---GAA--GTAAGGTAGGA-C-----------TTTTA--CAG-GGAGATGT-GTTGCATGTATCTC-CCA-TACTT-TTT-TCG--TTATATGT-G-AAC--GATTTTG----AAGT-AGAATTT------TTA-AAGCGTGA-TGT-TGTTCC-ATT-A--C---ATT-T---ACGA-------GAATTA--AA-C-------TTGTATG-TACTGAT-GT-AT-GCA---GATGAT-AT----GGTCATTTTT-GCTGAA---------AGTATAC---A-TGA-ACTTCA----AAA-AAAG-T--TA-GAT--------GAA-----TT--ATATGAAT-GCACAAGTAACTGGGA--------T-CTTACAGTTA-CTAT---TGAT--AAAAC-A--AAAATAGCT-AT-T-TTCAGGAATGGAGGTAA--A-At
gi|7 : -TACTTATTT-GTGAGTTGT-TGT-T-AAT----CCCTGA---AAATTCAAATTCTATACTTCAGAA----AA-TGGATAATCAGACCAA--CCTGATTAT---AC-AAGCCCTGGT-TAA--AGTT-------CTTTGTAATCTTGAT-CT-ATAGCT---AATGAC-ATTTTGGATGTTGTTTTGCAGAA-T------CAGT-TACTGTACTGA-ATTACA----AAA-TATG-T--TA-GATACGC--TG-AAAACT-T---ATACAGAT-G---AA-----CGGGGGGGGGGGTTGTTAATTGTGA-ATAT----TGCA-AAAAC-T--AAAATTGTT-AT-A-TTTAGAAATGATGG-AA--A-GCTT--CACACAA-ATG-AGAAATGGGAATAT--AAGGG---GG---GT-TATAGAAA-TA--TTAGATC-A-ACTTGTTTACTTGGG--C--GTTTTA-TTTAA-TTAAATTGtaaaaaatgtagaaaaatgg
gi|7 : --T-TGAAGC-AACAA-TA----AAGCAACTG-TA-------------------------CCTTATTG-TCCCTTTTTGATACT--------TAT-GT---T---TGTAGTATTaagcaacaataaagcaactgtaccttattgtccctttttgatacttatgtttgtagtatt
gi|9 : tacttatttgtgagttgttgttaatccctgaaaattcaaattctatacttcagaaaatggataatcagaccaacctgattatacaagccctggttaaagttctttgtaatcttgatctatagctaatgacattttggatgttgttttgcagaatcagttactgtactgaattacaaaatatgttagatacgctgaaaacttatacagatgaacgggggggggggttgttaattgtgaatattgcaaaaactaaaattgttatatttagaaatgatggaaagcttcacacaaatgagaaatgggaatataaggggggttatagaaatattagatcaacttgtttacttgggcgttttatttaattaaaTGAGA-A-GT---GTACCTAAAAC-C--AAGGTCGTT-AA-T-TCTAGAAATAGTGA-AA--AGATTT--CG-AAAA-ATG-AG--ATGTGAATGTACAA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTATATTTATGAAAGGAGTAAAGTTTAAGGAAACGAAATGTATTATATAATGATACTTTTGGAAATGATAAAGATATTTAATATAATTAAGGCATACTGTATGTGCTACAATGGGTAATTTTGAAAACCAAAGACACGCTCCAGATCAAAGGTAGTAAAGCTTAATTTGCAATTAATAATATTTTAAAAAATCATGTAGTTTTAATGGAAACAAAGATATGTAGTGGTTTTTTTGAAACGTATGTTGAAGTAAATCAATTTACGAAATCTTTGAAAATTATGGGGGAAAAATCTATAAAGGCCCCAGAAATTTGAAGAAAGTTCAAACATTTAAATTTGTAAGAATATATTGGGTTATAGAAAAACATGTACAATGGTTTATGTTTGAATTAGGAAGATTTACTTATGTGCAAGAGAAAATTGAAATATTTAAGTACTGGACAAAAATAAAGATATCACAGATATATTATTGTTGAAGGCTTGTTACGAAAGATATGTAATGCTAATAATAATTTGTTACTAATATCAAAGAAGAATTGTTCAATTTGGGGGTGAATTAGCTTGTGGTAACCACAGAGGTAATTTCAAGATATTATAAAATTATTGAACACAGATTATTAAGATATGCATAAGCAAAATATTATGTGTAATCTTGAAAACTCACCAAGTGTATTGTTAGACATTTGTTGACAGTTTTGTTTCAGTATATTTAAAAAAGTTGGGTAATGCAGGATTGAGACCTTA
Unaligned ( gi|8 ): AAAGTTCTACTCCTAATGCAATGATTTATTGTGAATTGGGCAGATTACCATTACAATGTGAGGAAATTAAGAATTTTAAAATATTGGTTAAAGCTTTTATCAACAAAAAATTGCATTCTGAAATCATGTTATGAGTATATGTGTGATGAAATGAGTAGCAAACACAACTGTAAAAATTGGGCAGTTGTTGTTAAGGGTAATTTGTCAAATGTTGGATTGATGAATTTTTGGTTAAATCAAG
Unaligned ( gi|12 ): TATGAATTATCAGGGCGTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTAGTCTCCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACAGTATTATATCCATTACTTTTTACT
Unaligned ( gi|13 ): GGGCTTGACTCTTTTAATTGGTTATAGTCCAAATTGCTTCAATGTTGGTATTCGAGGGAAACTCCTTCTATCTCCACCCAGTCTTTGTACAACGGCGAGAAACACGGAGGGTTTTAAGCAAATATTTTAGCAACGCACCAGGTCTTCTGCAAGGTACGTATTATATCCATTACTTTTTACT
Unaligned ( gi|15 ): GTTGTAGACCAAGGGCGAAAGTATGTAATAGTGCCTACATTGAAAAGACATTATTCTAACTTAGAAACACAATGTAGTACTATGTACAAGTACATAGCATTCTTTTATATGCATGTGAAATTTGGGGGTTTCACA
Unaligned ( gi|16 ): GAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTTCACAAGGCATCTGATGCTGAA
Unaligned ( gi|17 ): AGAATATCTTATTCTTGGGTTATTCACAATGCTCTGTATTTGATACTTTATGTTTGATACTTATATACGTAGCATTCTTTCATGTGCATGTGAAATTTGGGGGTTTCACAAGCATCTGATGCTGA
Unaligned ( gi|18 ): AAAGAAGAATTGTCAAATTTGGGGTTGAATTACTTGTGGAACCACAGAGGCAATCATGATATTTATAAAATTATTGAACACAGATTATTAGATATGCATAAGCAAAATATTATGTGTA
Unaligned ( gi|19 ): AAATTTATACTCATATGTCAAATGATTTATTGTGAATTGGGGACAGATTACCAT