lowQualScore : 11111111111111111111111111111 111111111111
lowQualScore : 4 11111111111111111111111111111 6666666666 1111 1111 22 11 11 11111 3333333 1111111111111 111111111111 1 22 3333 33 4 4
lowQualScore : 0 5 5 4 88888888888888888888888888888 3 888 6 44 1111111111 6 3 5555 0000 777 55 66 6 33 6 11111 3 0 0000000 7 6 6 6 8888888888888 4 0 22 111111111111 6 7 33 6666 0 6 6 6 22 0 6 0
lowQualScore : . . . . ............................. . ... . .. .......... . . .... .... ... .. .. . .. . ..... . . ....... . . . . ............. . . .. ............ . . .. .... . . . . .. . . .
lowQualScore : 0 6 7 3 66666666666666666666666666666 2 888 5 00 6666666666 2 2 9999 6666 000 77 00 7 22 2 88888 8 8 3333333 5 0 7 7 7777777777777 8 8 88 222222222222 0 0 00 7777 7 0 0 0 00 0 0 0
consensus : CCGGGT-GTAAATAATGTT-GATATTTCATTACGTAT----A-AG-CG-TG-T-TNAAGACTGAAATCAAT---CAGAATTTAACATTA-TTACAT-TAACTTGTAACT--GTTCATTAAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATT-AAAAN-TGNTGAT---T-ATNTAAC----G-TACATTTGTAATTTTT-ATATTCCCCCGGCAGAAGGG--TGGTTAGGGTTACATACGACAATT-CAAA-A--TATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
Reference ( gi|1 ) : CCGGGTTGTGAATAATGTT-GATATTTCATTAAGTAT----A-AG-CGGTGGTGTAAAGACTGAAATCAAT---CAGAATTTAACATTA-TTACATGTAACTTGTAACT--GGTCATTAAA----TTC-T-GTTACTTGTAATTTAGACATTCATTTTATT-AAAAA-TGTTGAT---T-GTTTAAC----G-TACATTCGTGAGTTTT-ATATTCCCCCGACAGAAGGG--TGGTTAAGGTTATATATGACAA----AAATATGTATCTTTAAAAGTTATATAGGATATATGTTCGTTATGTATGGGTCTAATCAGGGGTGTACAGAATTTTACATCATTCTG-TAAATCAATATACACCT
gi|5 : CCGGAT-ATGAATACTGTT-GATGTTT-----AGTA-----A-CG-CATT----TCA-GACTGAAATCAAT---CAAAATTTAACACTA---ACATTTAACT-GT--------TCATTAAA----TT----GTT----GTAATTTGTACATTCATTTTACT-AAAAT-TGATGAT---T-ATATAAC----G-CAAATTTATAAGTTTC-ATATTCCCCC-------------------GGTTATTTACGACAA----CTACA-ATATTTTTGAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTA
gi|4 : CCGGAT-ATGAATA-TGTTAGATGTTT-----AGTAA----A-CG-CATT----TCA-GACTGAAATCCACATGCACAATT-AACACTA----CATTTAACT-GT--------TCATTGAA------C-G-ATTG-TTGTAATTTGTACTTTCATTTTACT-AAAAGTTGATGAT---T-ATATAAC----G--AAATTTATAAGTTTTCATATTCCCC---------GG--TATTTAACG------ACAACTA----CAATAT-----TTTGAAAGTTACACAGGAAATAAATTCGTTA---ATGGATCTAACCAGGGGTGTA
gi|9 : CCGGGT-GTAAATAATGTT-GATATTTCATAACGCATTTAAA-AG-CGG----------ACTGAAATCAAT---CCGAATTTAATATCA-TTTTA---AACTTCTAACT--GTTCATTAAA----TTC-T-GT
gi|18 : CCGGGT-GTAAATAATGTT-GATATTTCATTAacattc
gi|6 : cCGGGT-GTAAATAATGTT-AATATTTCATTACGT-C----A-AGTC----------AGACTGAAATCAAT---TAGAATTTAAC----------------TTGTAACT--GTTCGGTATACATGTAC-TAGTAAGTTGTTATTTATGCATTCATTTGATT-AAAAT-TGTTGAT---T-GTTTAATTGAGG-TACATTTGTAATTTTT-ATATTCCCCCGGAAGAAGGG--TGGTTAGGGTTATATATGACAATTACAAA-----ATCTTTAAAATTTACAtgca
gi|10 : TGTT-GATATTTCATTACGCAT----TTAC-CGGTGCTGTGCAGACTGAAATCCAT---CAGAATTTAACATTGTTTACTTGTAAC---TAACTTAAATTGTGAAA----TTCAT-GTTCCTTG
gi|8 : GTT-GATATTTCATT-----T------------TGCTTTTCAGACTGAAATCTAT---CAGAATT-AACATTA-TTA------ACTTGCAACT--GTTCATTTAA----TTC-T-CTTAGTTGTAATTTGTACATTCATTTTAGT-AAAAA-
gi|3 : GGTGTAAA---TGATAT---T---CATAATCAAAC--TG-TT-CA-----CTTGTAATT--GTTCATTAAA----TTC-T-GTTCATTGTAATTTATACATTCA-TTTATT-AAAAT-TAGTGAT---CAATCT--C----GTTACATTTGTAATTTTT--T-TTCCTCCGGCAGAA-GG--TGGTT
gi|2 : ttatcctctgtaaccaaaatctcggcatttgattggctagctacgtatacgtacagggccggctgtaaaaacgcctttcacgtgacgatttatctacacacccggatatgcccgACTGACATCAAT---CGGAAGATGACATTA-TTA------GCTTGTAACT--GGTCATCAAA----TTC-T-GTTTGTTGTAATTTGTACATTCATTTTATTAAAAAA-TGTTAATCAGT-GTTAAACATA-A-TACATTTGTAATTTTT-ATATTCCCGAGGCAGAAGGA--TGGTTAGGGTTACATATGACAATTGCAA-----TATCTTTAAAAGTTACATAGGAAATTAATTTGT--TGTATGGGTCTAACCTGGGATGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|14 : T---T-NNNNNNN----N-NACATTAGTAATTTTT-ATAATCCCCCGGCAGAAGGGTATAGTAAGGGTTACATATGGCAATTCCAA-----TATCTTTAAAAGTTACAT
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CTGGAAGAACTTCATTGATCCCCTGGTTCACAACTCGGTATGTATATCATTTTATATCCTATGTAACCGAAATCTCGGCATTTGATTGGCTACAGGACCGGGTGTAAAACGTCATTCATGTCATGATTTATTTACACCCGGCTATACCCTGGTTGATAT
Unaligned ( gi|11 ): CTGGGAAAAGTCGCATTTGTCTTCTCCGTTCATATTTGTAAAACATTAACTCCTAATGTTACCAAAATCATCGGGCATTTGATTGGCTTACGGGACCAGAGTGAAAA
Unaligned ( gi|12 ): TTTCCTATGTAACCAACTCATCGGCATTTGATTGGCTACAGGGCTGGATATACATGTATAAAACGCTTTTCACGTGATGATTTATTTACACCTGGTTATACCCG
Unaligned ( gi|13 ): CTTATTCCCTATGTAACAAAAATTTTGTCATTTGATTGGCTAACGAGCCGGGTAAAAAAAACAAAAAAAAAAACCAAGCAAAAACCGTGACGTAC
Unaligned ( gi|15 ): GATATAGTGTATTATTTCCTATGTAACTAAAAATCTCGGCATTGGATTGGGTAAAGGTTATCCCCGGGTGTAA
Unaligned ( gi|16 ): TTATTATTTCTTGTGTAATAAAAATCTCGGCATTTGATTGGGCATAGGGCCTAGTATAA
Unaligned ( gi|17 ): ACTTAAATTGTGAAACTCATATCCCTTTTGGGGTTGA
Alignments
lowQualScore : 88888888888888888888888888888 66666666666 111 11111111111 444444444 111 1 2
lowQualScore : 6 3 5 0 55555555555555555555555555555 0 888 3 11111111111 66 4 777 9999 555 2 333 1 888 1 77 44444444444 5 1111 4 77 9 66 0 4 222222222 1 777 66 5 0
lowQualScore : . . . . ............................. . ... . ........... .. . ... .... ... . ... . ... . .. ........... . .... . .. . .. . . ......... . ... .. . .
lowQualScore : 7 2 0 5 88888888888888888888888888888 2 888 2 66666666666 11 4 888 4444 222 8 444 0 111 0 99 33333333333 7 6666 3 99 3 88 7 2 888888888 0 000 55 5 0
consensus : CCGGGT-GTGAATAATGTT-GATATTTCATTACGCAT----AAGC--G----C-TTN--NAGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--ACTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGG--TGGTTAGGGTTACATACGACAATT-CANA---ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
Reference ( family-913 ) : CCGGGT-GTAAATAATGTT-GATATTTCATTACGTAT----AAGC--G----TGTTN--AAGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T-AACTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-N-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGG--TGGTTAGGGTTACATACGACAATT-CAAA---ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|1 : CCGGGTTGTGAATAATGTT-GATATTTCATTAAGTAT----AAGC--GGTGGTGT-A--AAGACTGAAATCAAT---CAGAATTTAACATTATTACATGT-AACTTGTAACTG--GT-CATT---AAA----TTC-T-GTTACTTGTAATTTAGACATTCATTTTATTAAAA-A-TGTTGATT-G-TTT--AAC----G-TA---CATTCGTGA-GTTTTATATTCCCCCGACAGAAGGG--TGGTTAAGGTTATATATGACAA----AAATATGTATCTTTAAAAGTTATATAGGATATATGTTCGTTATGTATGGGTCTAATCAGGGGTGTACAGAATTTTACATCATTCTG-TAAATCAATATACACCT
gi|10 : TGTT-GATATTTCATTACGCAT----TTACCGG----TGCTGTGCAGACTGAAATCCAT---CAGAATTTAACATTGTT---T----ACTTGTAACTAACTTAAATTGTGAAA----TTCAT-GTTCCTTG
gi|14 : TT-N-NNN--NNN----N-NA---CATTAGTAA-TTTTTATAATCCCCCGGCAGAAGGGTATAGTAAGGGTTACATATGGCAATT-C-CA---ATATCTTTAAAAGTTACA
gi|18 : CCGGGT-GTAAATAATGTT-GATATTTCATTATGCAt
gi|2 : cACTGACATCAAT---CGGAAGATGACATTATTA-------GCTTGTAACTG--GT-CATC---AAA----TTC-T-GTTTGTTGTAATTTGTACATTCATTTTATTAAAA-AATGTTAATC-AGTGTTAAAC----A-TAATACATTTGTAA-TTTTTATATTCCCGAGGCAGAAGGA--TGGTTAGGGTTACATATGACAATTGCAA-----TATCTTTAAAAGTTACATAGGAAATTAATTTGTTG--TATGGGTCTAACCTGGGATGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|3 : T-T-CACTTGTAATTG--TT-CATT---AAA----TTC-T-GTTCATTGTAATTTATACATTCA-TTTATTAAAA-T-TAGTGATCAA-TCT----C----GTTA---CATTTGTAA-TTTTT-T-TTCCTCCGGCAGAA-GG--TGGTT
gi|4 : ttatcctctgtaaccaaaatctcggcatttgattggctagctacgtatacgtacagggccggctgtaaaaacgcctttcacgtgacgatttatctacacacccggatatgcccgggtgtaaatgatattcataatcaaactgCCGGAT-ATGAATA-TGTTAGATGTTT----A---GT----AAAC--G----CATTT--CAGACTGAAATCCACATGCACAATT-AACACTA---CAT-T-------TAACTG--TT-CATT---GAA----C-----GATTGTTGTAATTTGTACTTTCATTTTACTAAAAGT-TGATGATT-A-TAT--AAC----G--A---AATTTATAAGTTTTCATATTCCCC---------GG--TATTTA---------ACGACAACT--ACA---ATAT-TTTGAAAGTTACACAGGAAATAAATTCGTTA---ATGGATCTAACCAGGGGTGTA
gi|5 : CCGGAT-ATGAATACTGTT-GATGTTTAGTAACGCAT-----------------TTC--A-GACTGAAATCAAT---CAAAATTTAACACTA--ACAT-T-------TAACTG--TT-CATT---AAA----TT--------GTTGTAATTTGTACATTCATTTTACTAAAA-T-TGATGATT-A-TAT--AAC----G-CA---AATTTATAA-GTTTCATATTCCCCC-------------GGTTA---TT---TACGACAACT--ACA---ATATTTTTGAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTA
gi|6 : CGGGT-GTAAATAATGTT-AATATTTCATTACGT-C----AAG-----------TC--A-GACTGAAATCAAT---TAGAATTTAA----------------CTTGTAACTG--TT-CGGT---ATACATGTAC-TAGTAAGTTGTTATTTATGCATTCATTTGATTAAAA-T-TGTTGATT-G-TTT--AATTGAGG-TA---CATTTGTAA-TTTTTATATTCCCCCGGAAGAAGGG--TGGTTAGGGTTATATATGACAATTACAAA-----ATCTTTAAAATTTACA
gi|8 : GTT-GATATTTCATT-----T-------T--G----CTTTT--CAGACTGAAATCTAT---CAGAATT-AACATTATTA-------ACTTGCAACTG--TT-CATT---TAA----TTC-T-CTTAGTTGTAATTTGTACATTCATTTTAGTAAAA-
gi|9 : CCGGGT-GTAAATAATGTT-GATATTTCATAACGCATTTAAAAGC--G-------------GACTGAAATCAAT---CCGAATTTAATATCATT---T-TAAACTTCTAACTG--TT-CATT---AAA----TTC-T-GTa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTGGAAGAACTTCATTGATCCCCTGGTTCACAACTCGGTATGTATATCATTTTATATCCTATGTAACCGAAATCTCGGCATTTGATTGGCTACAGGACCGGGTGTAAAACGTCATTCATGTCATGATTTATTTACACCCGGCTATACCCTGGTTGATAT
Unaligned ( gi|11 ): CTGGGAAAAGTCGCATTTGTCTTCTCCGTTCATATTTGTAAAACATTAACTCCTAATGTTACCAAAATCATCGGGCATTTGATTGGCTTACGGGACCAGAGTGAAAA
Unaligned ( gi|12 ): TTTCCTATGTAACCAACTCATCGGCATTTGATTGGCTACAGGGCTGGATATACATGTATAAAACGCTTTTCACGTGATGATTTATTTACACCTGGTTATACCCG
Unaligned ( gi|13 ): CTTATTCCCTATGTAACAAAAATTTTGTCATTTGATTGGCTAACGAGCCGGGTAAAAAAAACAAAAAAAAAAACCAAGCAAAAACCGTGACGTAC
Unaligned ( gi|15 ): GATATAGTGTATTATTTCCTATGTAACTAAAAATCTCGGCATTGGATTGGGTAAAGGTTATCCCCGGGTGTAA
Unaligned ( gi|16 ): TTATTATTTCTTGTGTAATAAAAATCTCGGCATTTGATTGGGCATAGGGCCTAGTATAA
Unaligned ( gi|17 ): ACTTAAATTGTGAAACTCATATCCCTTTTGGGGTTGA
Alignments
lowQualScore : 77777777777777777777777 555555555555 111 11111111111 3333333 111 1 1
lowQualScore : 6 3 5 0 3 66666666666666666666666 0 888 3 777777777777 66 4 777 9999 555 2 222 1 888 1 77 44444444444 5 1111 4 77 9 66 0 4 2222222 1 777 22 5 5
lowQualScore : . . . . . ....................... . ... . ............ .. . ... .... ... . ... . ... . .. ........... . .... . .. . .. . . ....... . ... .. . .
lowQualScore : 7 2 0 5 4 66666666666666666666666 2 888 2 333333333333 11 4 888 4444 222 8 000 0 111 0 99 33333333333 7 6666 3 99 3 88 7 2 8888888 0 000 00 5 5
consensus : CCGGGT-GTGAATAATGTT-GATATTTCATTACGCAT----A--AGCG--T----TTCAGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGG--TGGTTAGGGTTACATACGACAATT-ACA---ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
Reference ( family-913 ) : CCGGGT-GTGAATAATGTT-GATATTTCATTACGCAT----A--AGCGC-T----TNNAGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGG--TGGTTAGGGTTACATACGACAATTCANA---ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
gi|1 : CCGGGTTGTGAATAATGTT-GATATTTCATTAAGTAT----A--AGCGG-TGGTGTAAAGACTGAAATCAAT---CAGAATTTAACATTATTACATGT--AACTTGTAACTG--GT-CATT---AAA----TTC-T-GTTACTTGTAATTTAGACATTCATTTTATTAAAA-A-TGTTGATT-G-TTT--AAC----G-TA---CATTCGTGA-GTTTTATATTCCCCCGACAGAAGGG--TGGTTAAGGTTATATATGACAA---AAATATGTATCTTTAAAAGTTATATAGGATATATGTTCGTTATGTATGGGTCTAATCAGGGGTGTACAGAATTTTACATCATTCTG-TAAATCAATATACACCT
gi|10 : TGTT-GATATTTCATTACGCATTT--ACCGGTGC-TG---TGCAGACTGAAATCCAT---CAGAATTTAACATTGT----T-T--A-CTTGTAACTAACTTAAATTGTGAAA----TTCAT-GTTCCTTG
gi|14 : TT-N-NNN--NNN----N-NA---CATTAGTAA-TTTTTATAATCCCCCGGCAGAAGGGTATAGTAAGGGTTACATATGGCAATTC-CA---ATATCTTTAAAAGTTACA
gi|18 : CCGGGT-GTAAATAATGTT-GATATTTCATTATGCAt
gi|2 : cACTGACATCAAT---CGGAAGATGACATTATTA-------G-CTTGTAACTG--GT-CATC---AAA----TTC-T-GTTTGTTGTAATTTGTACATTCATTTTATTAAAA-AATGTTAATC-AGTGTTAAAC----A-TAATACATTTGTAA-TTTTTATATTCCCGAGGCAGAAGGA--TGGTTAGGGTTACATATGACAATT-GCA---ATATCTTTAAAAGTTACATAGGAAATTAATTTGTTG--TATGGGTCTAACCTGGGATGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|3 : T-C--A-CTTGTAATTG--TT-CATT---AAA----TTC-T-GTTCATTGTAATTTATACATTCA-TTTATTAAAA-T-TAGTGATCAA-TCT----C----GTTA---CATTTGTAA-TTTTT-T-TTCCTCCGGCAGAA-GG--TGGTT
gi|4 : ttatcctctgtaaccaaaatctcggcatttgattggctagctacgtatacgtacagggccggctgtaaaaacgcctttcacgtgacgatttatctacacacccggatatgcccgggtgtaaatgatattcataatcaaactgtCCGGAT-ATGAATA-TGTTAGATGTTT----A---GT----A--AACGCAT----TTCAGACTGAAATCCACATGCACAATT-AACACTA---CAT-T--------TAACTG--TT-CATT---GAA----C-----GATTGTTGTAATTTGTACTTTCATTTTACTAAAAGT-TGATGATT-A-TAT--AAC----G--A---AATTTATAAGTTTTCATATTCCCC---------GG--TATTTA---------ACGACAACT-ACA---ATAT-TTTGAAAGTTACACAGGAAATAAATTCGTTA---ATGGATCTAACCAGGGGTGTA
gi|5 : CCGGAT-ATGAATACTGTT-GATGTTTAGTAACGCAT------------------TTCAGACTGAAATCAAT---CAAAATTTAACACTA--ACAT-T--------TAACTG--TT-CATT---AAA----TT--------GTTGTAATTTGTACATTCATTTTACTAAAA-T-TGATGATT-A-TAT--AAC----G-CA---AATTTATAA-GTTTCATATTCCCCC-------------GGTTA---TT---TACGACAACT-ACA---ATATTTTTGAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTA
gi|6 : CGGGT-GTAAATAATGTT-AATATTTCATTACGT-C----A--AG----------TCAGACTGAAATCAAT---TAGAATTTAAC-----------------TTGTAACTG--TT-CGGT---ATACATGTAC-TAGTAAGTTGTTATTTATGCATTCATTTGATTAAAA-T-TGTTGATT-G-TTT--AATTGAGG-TA---CATTTGTAA-TTTTTATATTCCCCCGGAAGAAGGG--TGGTTAGGGTTATATATGACAATT-ACA---AAATCTTTAAAATTTACA
gi|8 : GTT-GATATTTCATTTTGC-------------T-T----TTCAGACTGAAATCTAT---CAGAATT-AACATTATTA-------A-CTTGCAACTG--TT-CATT---TAA----TTC-T-CTTAGTTGTAATTTGTACATTCATTTTAGTAAAA-
gi|9 : CCGGGT-GTAAATAATGTT-GATATTTCATAACGCATTTAAA--AGCG-----------GACTGAAATCAAT---CCGAATTTAATATCATT---T-TAAA-CTTCTAACTG--TT-CATT---AAA----TTC-T-GTa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTGGAAGAACTTCATTGATCCCCTGGTTCACAACTCGGTATGTATATCATTTTATATCCTATGTAACCGAAATCTCGGCATTTGATTGGCTACAGGACCGGGTGTAAAACGTCATTCATGTCATGATTTATTTACACCCGGCTATACCCTGGTTGATAT
Unaligned ( gi|11 ): CTGGGAAAAGTCGCATTTGTCTTCTCCGTTCATATTTGTAAAACATTAACTCCTAATGTTACCAAAATCATCGGGCATTTGATTGGCTTACGGGACCAGAGTGAAAA
Unaligned ( gi|12 ): TTTCCTATGTAACCAACTCATCGGCATTTGATTGGCTACAGGGCTGGATATACATGTATAAAACGCTTTTCACGTGATGATTTATTTACACCTGGTTATACCCG
Unaligned ( gi|13 ): CTTATTCCCTATGTAACAAAAATTTTGTCATTTGATTGGCTAACGAGCCGGGTAAAAAAAACAAAAAAAAAAACCAAGCAAAAACCGTGACGTAC
Unaligned ( gi|15 ): GATATAGTGTATTATTTCCTATGTAACTAAAAATCTCGGCATTGGATTGGGTAAAGGTTATCCCCGGGTGTAA
Unaligned ( gi|16 ): TTATTATTTCTTGTGTAATAAAAATCTCGGCATTTGATTGGGCATAGGGCCTAGTATAA
Unaligned ( gi|17 ): ACTTAAATTGTGAAACTCATATCCCTTTTGGGGTTGA
Alignments
lowQualScore : 777777777777777777777 555555555555 111 11111111111 111 1 1
lowQualScore : 6 3 5 0 888888888888888888888 5 0 888 3 777777777777 66 4 777 9999 555 2 222 1 888 1 77 44444444444 5 1111 4 77 9 66 0 0 6 1 777 22 5 5
lowQualScore : . . . . ..................... . . ... . ............ .. . ... .... ... . ... . ... . .. ........... . .... . .. . .. . . . . ... .. . .
lowQualScore : 7 2 0 2 777777777777777777777 7 2 888 2 333333333333 11 4 888 4444 222 8 000 0 111 0 99 33333333333 7 6666 3 99 3 88 7 3 7 0 000 00 5 5
consensus : CCGGGT-GTGAATAATGTT-GATATTTCATTACGCAT----A--AGCG-T----T-CA-GACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
Reference ( family-913 ) : CCGGGT-GTGAATAATGTT-GATATTTCATTACGCAT----A--AGCGTT----T-CA-GACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
gi|1 : CCGGGTTGTGAATAATGTT-GATATTTCATTAAGTAT----A--AGCGGTGGTGT-AAAGACTGAAATCAAT---CAGAATTTAACATTATTACATGT--AACTTGTAACTG--GT-CATT---AAA----TTC-T-GTTACTTGTAATTTAGACATTCATTTTATTAAAA-A-TGTTGATT-G-TTT--AAC----G-TA---CATTCGTGA-GTTTTATATTCCCCCGACAGAAGGGTG--GTTAAGGTTATATATGACAAAAATATGTATCTTTAAAAGTTATATAGGATATATGTTCGTTATGTATGGGTCTAATCAGGGGTGTACAGAATTTTACATCATTCTG-TAAATCAATATACACCT
gi|10 : TGTT-GATATTTCATTACGCATTT--ACCGGTGCTG---TGCA-GACTGAAATCCAT---CAGAATTTAACATTGT----T-T--A-CTTGTAACTAACTTAAATTGTGAAA----TTCAT-GTTCCTTG
gi|14 : TT-N-NNN--NNN----N-NA---CATTAGTAA-TTTTTATAATCCCCCGGCAGAAGGGTATAGTAAGGGTTACATATGGCAATTCCA-ATATCTTTAAAAGTTACA
gi|18 : CCGGGT-GTAAATAATGTT-GATATTTCATTATGCAt
gi|2 : cACTGACATCAAT---CGGAAGATGACATTATTA-------G-CTTGTAACTG--GT-CATC---AAA----TTC-T-GTTTGTTGTAATTTGTACATTCATTTTATTAAAA-AATGTTAATC-AGTGTTAAAC----A-TAATACATTTGTAA-TTTTTATATTCCCGAGGCAGAAGGATG--GTTAGGGTTACATATGACAATTGCA-ATATCTTTAAAAGTTACATAGGAAATTAATTTGTTG--TATGGGTCTAACCTGGGATGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|3 : T-C--A-CTTGTAATTG--TT-CATT---AAA----TTC-T-GTTCATTGTAATTTATACATTCA-TTTATTAAAA-T-TAGTGATCAA-TCT----C----GTTA---CATTTGTAA-TTTTT-T-TTCCTCCGGCAGAA-GGTG--GTT
gi|4 : ttatcctctgtaaccaaaatctcggcatttgattggctagctacgtatacgtacagggccggctgtaaaaacgcctttcacgtgacgatttatctacacacccggatatgcccgggtgtaaatgatattcataatcaaactgtCCGGAT-ATGAATA-TGTTAGATGTTT-AGTAAAC----------GCATT----T-CA-GACTGAAATCCACATGCACAATT-AACACTA---CAT-T--------TAACTG--TT-CATT---GAA----C-----GATTGTTGTAATTTGTACTTTCATTTTACTAAAAGT-TGATGATT-A-TAT--AAC----G--A---AATTTATAAGTTTTCATATTCCCC---------GGTA--TTTA---------ACGACAACTACA-ATAT-TTTGAAAGTTACACAGGAAATAAATTCGTTA---ATGGATCTAACCAGGGGTGTA
gi|5 : CCGGAT-ATGAATACTGTT-GATGTTTAGTAACGCAT------------T----T-CA-GACTGAAATCAAT---CAAAATTTAACACTA--ACAT-T--------TAACTG--TT-CATT---AAA----TT--------GTTGTAATTTGTACATTCATTTTACTAAAA-T-TGATGATT-A-TAT--AAC----G-CA---AATTTATAA-GTTTCATATTCCCCC-----------G--GTTA---TT---TACGACAACTACA-ATATTTTTGAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTA
gi|6 : CGGGT-GTAAATAATGTT-AATATTTCATTACGT-C----A--AG--------T-CA-GACTGAAATCAAT---TAGAATTTAAC-----------------TTGTAACTG--TT-CGGT---ATACATGTAC-TAGTAAGTTGTTATTTATGCATTCATTTGATTAAAA-T-TGTTGATT-G-TTT--AATTGAGG-TA---CATTTGTAA-TTTTTATATTCCCCCGGAAGAAGGGTG--GTTAGGGTTATATATGACAATTACA-AAATCTTTAAAATTTACA
gi|8 : GTT-GATATTTCATTTTGC-T-----------TT----T-CA-GACTGAAATCTAT---CAGAATT-AACATTATTA-------A-CTTGCAACTG--TT-CATT---TAA----TTC-T-CTTAGTTGTAATTTGTACATTCATTTTAGTAAAA-
gi|9 : CCGGGT-GTAAATAATGTT-GATATTTCATAACGCATTTAAA--AGCG-----------GACTGAAATCAAT---CCGAATTTAATATCATT---T-TAAA-CTTCTAACTG--TT-CATT---AAA----TTC-T-GTa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTGGAAGAACTTCATTGATCCCCTGGTTCACAACTCGGTATGTATATCATTTTATATCCTATGTAACCGAAATCTCGGCATTTGATTGGCTACAGGACCGGGTGTAAAACGTCATTCATGTCATGATTTATTTACACCCGGCTATACCCTGGTTGATAT
Unaligned ( gi|11 ): CTGGGAAAAGTCGCATTTGTCTTCTCCGTTCATATTTGTAAAACATTAACTCCTAATGTTACCAAAATCATCGGGCATTTGATTGGCTTACGGGACCAGAGTGAAAA
Unaligned ( gi|12 ): TTTCCTATGTAACCAACTCATCGGCATTTGATTGGCTACAGGGCTGGATATACATGTATAAAACGCTTTTCACGTGATGATTTATTTACACCTGGTTATACCCG
Unaligned ( gi|13 ): CTTATTCCCTATGTAACAAAAATTTTGTCATTTGATTGGCTAACGAGCCGGGTAAAAAAAACAAAAAAAAAAACCAAGCAAAAACCGTGACGTAC
Unaligned ( gi|15 ): GATATAGTGTATTATTTCCTATGTAACTAAAAATCTCGGCATTGGATTGGGTAAAGGTTATCCCCGGGTGTAA
Unaligned ( gi|16 ): TTATTATTTCTTGTGTAATAAAAATCTCGGCATTTGATTGGGCATAGGGCCTAGTATAA
Unaligned ( gi|17 ): ACTTAAATTGTGAAACTCATATCCCTTTTGGGGTTGA
Alignments
lowQualScore : 888888888888888888888 555555555555 111 11111111111 111 1 1
lowQualScore : 6 3 5 66 0 222222222222222222222 0 888 3 777777777777 66 4 777 9999 555 2 222 1 888 1 77 44444444444 5 1111 4 77 9 66 0 0 6 1 777 22 5 5
lowQualScore : . . . .. . ..................... . ... . ............ .. . ... .... ... . ... . ... . .. ........... . .... . .. . .. . . . . ... .. . .
lowQualScore : 7 2 0 99 4 666666666666666666666 2 888 2 333333333333 11 4 888 4444 222 8 000 0 111 0 99 33333333333 7 6666 3 99 3 88 7 3 7 0 000 00 5 5
consensus : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CGCAT------AAGC-GTTC------AGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
Reference ( family-913 ) : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CGCAT------AAGC-GTTC------AGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
gi|1 : CCGGGTTGTGAATAATGTT-GATATTTCATTA--AGTAT------AAGC-GGTGGTGTAAAGACTGAAATCAAT---CAGAATTTAACATTATTACATGT--AACTTGTAACTG--GT-CATT---AAA----TTC-T-GTTACTTGTAATTTAGACATTCATTTTATTAAAA-A-TGTTGATT-G-TTT--AAC----G-TA---CATTCGTGA-GTTTTATATTCCCCCGACAGAAGGGTG--GTTAAGGTTATATATGACAAAAATATGTATCTTTAAAAGTTATATAGGATATATGTTCGTTATGTATGGGTCTAATCAGGGGTGTACAGAATTTTACATCATTCTG-TAAATCAATATACACCT
gi|10 : TGTT-GATATTTCATTA--CGCATTTACCGGTGCTGTGC------AGACTGAAATCCAT---CAGAATTTAACATTGT----T-T--A-CTTGTAACTAACTTAAATTGTGAAA----TTCAT-GTTCCTTG
gi|14 : TT-N-NNN--NNN----N-NA---CATTAGTAA-TTTTTATAATCCCCCGGCAGAAGGGTATAGTAAGGGTTACATATGGCAATTCCA-ATATCTTTAAAAGTTACA
gi|18 : CCGGGT-GTAAATAATGTT-GATATTTCATTA--TGCAt
gi|2 : cACTGACATCAAT---CGGAAGATGACATTATTA-------G-CTTGTAACTG--GT-CATC---AAA----TTC-T-GTTTGTTGTAATTTGTACATTCATTTTATTAAAA-AATGTTAATC-AGTGTTAAAC----A-TAATACATTTGTAA-TTTTTATATTCCCGAGGCAGAAGGATG--GTTAGGGTTACATATGACAATTGCA-ATATCTTTAAAAGTTACATAGGAAATTAATTTGTTG--TATGGGTCTAACCTGGGATGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|3 : T-C--A-CTTGTAATTG--TT-CATT---AAA----TTC-T-GTTCATTGTAATTTATACATTCA-TTTATTAAAA-T-TAGTGATCAA-TCT----C----GTTA---CATTTGTAA-TTTTT-T-TTCCTCCGGCAGAA-GGTG--GTT
gi|4 : ttatcctctgtaaccaaaatctcggcatttgattggctagctacgtatacgtacagggccggctgtaaaaacgcctttcacgtgacgatttatctacacacccggatatgcccgggtgtaaatgatattcataatcaaactgtCCGGAT-ATGAATA-TGTTAGATGTTT-AGTAAACGCAT------------TTC------AGACTGAAATCCACATGCACAATT-AACACTA---CAT-T--------TAACTG--TT-CATT---GAA----C-----GATTGTTGTAATTTGTACTTTCATTTTACTAAAAGT-TGATGATT-A-TAT--AAC----G--A---AATTTATAAGTTTTCATATTCCCC---------GGTA--TTTA---------ACGACAACTACA-ATAT-TTTGAAAGTTACACAGGAAATAAATTCGTTA---ATGGATCTAACCAGGGGTGTA
gi|5 : CCGGAT-ATGAATACTGTT-GATGTTTAGTAA--CGCAT------------TTC------AGACTGAAATCAAT---CAAAATTTAACACTA--ACAT-T--------TAACTG--TT-CATT---AAA----TT--------GTTGTAATTTGTACATTCATTTTACTAAAA-T-TGATGATT-A-TAT--AAC----G-CA---AATTTATAA-GTTTCATATTCCCCC-----------G--GTTA---TT---TACGACAACTACA-ATATTTTTGAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTA
gi|6 : CGGGT-GTAAATAATGTT-AATATTTCATTA--CGT-C------AAG----TC------AGACTGAAATCAAT---TAGAATTTAAC-----------------TTGTAACTG--TT-CGGT---ATACATGTAC-TAGTAAGTTGTTATTTATGCATTCATTTGATTAAAA-T-TGTTGATT-G-TTT--AATTGAGG-TA---CATTTGTAA-TTTTTATATTCCCCCGGAAGAAGGGTG--GTTAGGGTTATATATGACAATTACA-AAATCTTTAAAATTTACA
gi|8 : GTT-GATATTTCATTT--TGCTT------------TTC------AGACTGAAATCTAT---CAGAATT-AACATTATTA-------A-CTTGCAACTG--TT-CATT---TAA----TTC-T-CTTAGTTGTAATTTGTACATTCATTTTAGTAAAA-
gi|9 : CCGGGT-GTAAATAATGTT-GATATTTCATAA--CGCATTTAA--AAGC-G----------GACTGAAATCAAT---CCGAATTTAATATCATT---T-TAAA-CTTCTAACTG--TT-CATT---AAA----TTC-T-GTa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTGGAAGAACTTCATTGATCCCCTGGTTCACAACTCGGTATGTATATCATTTTATATCCTATGTAACCGAAATCTCGGCATTTGATTGGCTACAGGACCGGGTGTAAAACGTCATTCATGTCATGATTTATTTACACCCGGCTATACCCTGGTTGATAT
Unaligned ( gi|11 ): CTGGGAAAAGTCGCATTTGTCTTCTCCGTTCATATTTGTAAAACATTAACTCCTAATGTTACCAAAATCATCGGGCATTTGATTGGCTTACGGGACCAGAGTGAAAA
Unaligned ( gi|12 ): TTTCCTATGTAACCAACTCATCGGCATTTGATTGGCTACAGGGCTGGATATACATGTATAAAACGCTTTTCACGTGATGATTTATTTACACCTGGTTATACCCG
Unaligned ( gi|13 ): CTTATTCCCTATGTAACAAAAATTTTGTCATTTGATTGGCTAACGAGCCGGGTAAAAAAAACAAAAAAAAAAACCAAGCAAAAACCGTGACGTAC
Unaligned ( gi|15 ): GATATAGTGTATTATTTCCTATGTAACTAAAAATCTCGGCATTGGATTGGGTAAAGGTTATCCCCGGGTGTAA
Unaligned ( gi|16 ): TTATTATTTCTTGTGTAATAAAAATCTCGGCATTTGATTGGGCATAGGGCCTAGTATAA
Unaligned ( gi|17 ): ACTTAAATTGTGAAACTCATATCCCTTTTGGGGTTGA
Alignments
lowQualScore : 888888888888888888888 555555555555 111 11111111111 111 1 1
lowQualScore : 6 3 5 66 0 222222222222222222222 0 888 3 777777777777 66 4 777 9999 555 2 222 1 888 1 77 44444444444 5 1111 4 77 9 66 0 0 6 1 777 22 5 5
lowQualScore : . . . .. . ..................... . ... . ............ .. . ... .... ... . ... . ... . .. ........... . .... . .. . .. . . . . ... .. . .
lowQualScore : 7 2 0 99 4 666666666666666666666 2 888 2 333333333333 11 4 888 4444 222 8 000 0 111 0 99 33333333333 7 6666 3 99 3 88 7 3 7 0 000 00 5 5
consensus : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CGCAT------AAGC-GTTC------AGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
Reference ( family-913 ) : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CGCAT------AAGC-GTTC------AGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
gi|1 : CCGGGTTGTGAATAATGTT-GATATTTCATTA--AGTAT------AAGC-GGTGGTGTAAAGACTGAAATCAAT---CAGAATTTAACATTATTACATGT--AACTTGTAACTG--GT-CATT---AAA----TTC-T-GTTACTTGTAATTTAGACATTCATTTTATTAAAA-A-TGTTGATT-G-TTT--AAC----G-TA---CATTCGTGA-GTTTTATATTCCCCCGACAGAAGGGTG--GTTAAGGTTATATATGACAAAAATATGTATCTTTAAAAGTTATATAGGATATATGTTCGTTATGTATGGGTCTAATCAGGGGTGTACAGAATTTTACATCATTCTG-TAAATCAATATACACCT
gi|10 : TGTT-GATATTTCATTA--CGCATTTACCGGTGCTGTGC------AGACTGAAATCCAT---CAGAATTTAACATTGT----T-T--A-CTTGTAACTAACTTAAATTGTGAAA----TTCAT-GTTCCTTG
gi|14 : TT-N-NNN--NNN----N-NA---CATTAGTAA-TTTTTATAATCCCCCGGCAGAAGGGTATAGTAAGGGTTACATATGGCAATTCCA-ATATCTTTAAAAGTTACA
gi|18 : CCGGGT-GTAAATAATGTT-GATATTTCATTA--TGCAt
gi|2 : cACTGACATCAAT---CGGAAGATGACATTATTA-------G-CTTGTAACTG--GT-CATC---AAA----TTC-T-GTTTGTTGTAATTTGTACATTCATTTTATTAAAA-AATGTTAATC-AGTGTTAAAC----A-TAATACATTTGTAA-TTTTTATATTCCCGAGGCAGAAGGATG--GTTAGGGTTACATATGACAATTGCA-ATATCTTTAAAAGTTACATAGGAAATTAATTTGTTG--TATGGGTCTAACCTGGGATGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|3 : T-C--A-CTTGTAATTG--TT-CATT---AAA----TTC-T-GTTCATTGTAATTTATACATTCA-TTTATTAAAA-T-TAGTGATCAA-TCT----C----GTTA---CATTTGTAA-TTTTT-T-TTCCTCCGGCAGAA-GGTG--GTT
gi|4 : ttatcctctgtaaccaaaatctcggcatttgattggctagctacgtatacgtacagggccggctgtaaaaacgcctttcacgtgacgatttatctacacacccggatatgcccgggtgtaaatgatattcataatcaaactgtCCGGAT-ATGAATA-TGTTAGATGTTT-AGTAAACGCAT------------TTC------AGACTGAAATCCACATGCACAATT-AACACTA---CAT-T--------TAACTG--TT-CATT---GAA----C-----GATTGTTGTAATTTGTACTTTCATTTTACTAAAAGT-TGATGATT-A-TAT--AAC----G--A---AATTTATAAGTTTTCATATTCCCC---------GGTA--TTTA---------ACGACAACTACA-ATAT-TTTGAAAGTTACACAGGAAATAAATTCGTTA---ATGGATCTAACCAGGGGTGTA
gi|5 : CCGGAT-ATGAATACTGTT-GATGTTTAGTAA--CGCAT------------TTC------AGACTGAAATCAAT---CAAAATTTAACACTA--ACAT-T--------TAACTG--TT-CATT---AAA----TT--------GTTGTAATTTGTACATTCATTTTACTAAAA-T-TGATGATT-A-TAT--AAC----G-CA---AATTTATAA-GTTTCATATTCCCCC-----------G--GTTA---TT---TACGACAACTACA-ATATTTTTGAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTA
gi|6 : CGGGT-GTAAATAATGTT-AATATTTCATTA--CGT-C------AAG----TC------AGACTGAAATCAAT---TAGAATTTAAC-----------------TTGTAACTG--TT-CGGT---ATACATGTAC-TAGTAAGTTGTTATTTATGCATTCATTTGATTAAAA-T-TGTTGATT-G-TTT--AATTGAGG-TA---CATTTGTAA-TTTTTATATTCCCCCGGAAGAAGGGTG--GTTAGGGTTATATATGACAATTACA-AAATCTTTAAAATTTACA
gi|8 : GTT-GATATTTCATTT--TGCTT------------TTC------AGACTGAAATCTAT---CAGAATT-AACATTATTA-------A-CTTGCAACTG--TT-CATT---TAA----TTC-T-CTTAGTTGTAATTTGTACATTCATTTTAGTAAAA-
gi|9 : CCGGGT-GTAAATAATGTT-GATATTTCATAA--CGCATTTAA--AAGC-G----------GACTGAAATCAAT---CCGAATTTAATATCATT---T-TAAA-CTTCTAACTG--TT-CATT---AAA----TTC-T-GTa
blockSeqs : . A A AA TTACCGGTGCTGTGC ATG T TTTTAAA AC A GTG CATG AT C AA T AG N TA TGAGGTA G CGGC G TA G AC . C T CA T .
blockSeqs : . C . . TTAAAAGCG . T ACATT . . . . TA T GT G AA G . ATAATA . AGGC G . G AC . C T
blockSeqs : . A . . AAGTC . T TTTA . . . . T C T A N C . GTTA . CGGC G . G AT . T .
blockSeqs : . A . . TTC . T TTAG . . . . T T T A A A . NNA . CGGA . . . . . C
blockSeqs : . . . . TTC . T CATT . . . . T A T T A A . GCA . C . . . . . .
blockSeqs : . . TTC . . TTAA . . . . T A G T . GA . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : TTAGC**************** TTNA********
originalCons : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CGCAT------AAGC-GTTC------AGACTGAAATCAAT---CAGAATTTAACATTATTACAT-T--A-CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
finalCons : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CGCATTTAGC----------------AGACTGAAATCAAT---CAGAATTTAACATTATTNA--------CTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTGGAAGAACTTCATTGATCCCCTGGTTCACAACTCGGTATGTATATCATTTTATATCCTATGTAACCGAAATCTCGGCATTTGATTGGCTACAGGACCGGGTGTAAAACGTCATTCATGTCATGATTTATTTACACCCGGCTATACCCTGGTTGATAT
Unaligned ( gi|11 ): CTGGGAAAAGTCGCATTTGTCTTCTCCGTTCATATTTGTAAAACATTAACTCCTAATGTTACCAAAATCATCGGGCATTTGATTGGCTTACGGGACCAGAGTGAAAA
Unaligned ( gi|12 ): TTTCCTATGTAACCAACTCATCGGCATTTGATTGGCTACAGGGCTGGATATACATGTATAAAACGCTTTTCACGTGATGATTTATTTACACCTGGTTATACCCG
Unaligned ( gi|13 ): CTTATTCCCTATGTAACAAAAATTTTGTCATTTGATTGGCTAACGAGCCGGGTAAAAAAAACAAAAAAAAAAACCAAGCAAAAACCGTGACGTAC
Unaligned ( gi|15 ): GATATAGTGTATTATTTCCTATGTAACTAAAAATCTCGGCATTGGATTGGGTAAAGGTTATCCCCGGGTGTAA
Unaligned ( gi|16 ): TTATTATTTCTTGTGTAATAAAAATCTCGGCATTTGATTGGGCATAGGGCCTAGTATAA
Unaligned ( gi|17 ): ACTTAAATTGTGAAACTCATATCCCTTTTGGGGTTGA
Alignments
lowQualScore : 6666666666666666666666666666 222222222222 111 11111111111 111 1 1
lowQualScore : 6 3 5 66 5 9999999999999999999999999999 0 777 4 1 888888888888 1 66 4 777 9999 555 2 222 1 888 1 77 44444444444 5 1111 4 77 9 66 0 0 6 1 777 22 5 5
lowQualScore : . . . .. . ............................ . ... . . ............ . .. . ... .... ... . ... . ... . .. ........... . .... . .. . .. . . . . ... .. . .
lowQualScore : 7 2 0 99 0 9999999999999999999999999999 2 888 8 9 222222222222 1 11 4 888 4444 222 8 000 0 111 0 99 33333333333 7 6666 3 99 3 88 7 3 7 0 000 00 5 5
consensus : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CG-CATTT---A----------G-C----------AGACTGAAATCAAT---CAGAATTTAACATTATT---A------ACTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
Reference ( family-913 ) : CCGGGT-GTGAATAATGTT-GATATTTCATTA--CG-CATTT---A----------G-C----------AGACTGAAATCAAT---CAGAATTTAACATTATT---N------ACTTGTAACTG--TT-CATT---AAA----TTC-T-GTTNGTTGTAATTTGTACATTCATTTTATTAAAA-T-TGNTGATT-A-TNT--AAC----G-TA---CATTTGTAA-TTTTTATATTCCCCCGGCAGAAGGGTG--GTTAGGGTTACATACGACAATTACA-ATATCTTTAAAAGTTACACAGGAAATAAATTCGTTA--TATGGGTCTAACCAGGGGTGTACAGGATTTTACACCNNTCTGTTAAATCAATACACACCT
gi|1 : CCGGGTTGTGAATAATGTT-GATATTTCATTA--AG-TATA----A----------G-CGGTGGTGTAAAGACTGAAATCAAT---CAGAATTTAACATTATT---ACATGTAACTTGTAACTG--GT-CATT---AAA----TTC-T-GTTACTTGTAATTTAGACATTCATTTTATTAAAA-A-TGTTGATT-G-TTT--AAC----G-TA---CATTCGTGA-GTTTTATATTCCCCCGACAGAAGGGTG--GTTAAGGTTATATATGACAAAAATATGTATCTTTAAAAGTTATATAGGATATATGTTCGTTATGTATGGGTCTAATCAGGGGTGTACAGAATTTTACATCATTCTG-TAAATCAATATACACCT
gi|10 : TGTT-GATATTTCATTA--CG-CATTT---ACCGGTGCTGTG-C----------AGACTGAAATCCAT---CAGAATTTAACATTGTT---T------ACTTGTAACTAACTTAAATTGTGAAA----TTCAT-GTTCCTTG
gi|14 : TT-N-NNN--NNN----N-NA---CATTAGTAA-TTTTTATAATCCCCCGGCAGAAGGGTATAGTAAGGGTTACATATGGCAATTCCA-ATATCTTTAAAAGTTACA
gi|18 : CCGGGT-GTAAATAATGTT-GATATTTCATTA--TG-CAt
gi|2 : cACTGACATCAAT---CGGAAGATGACATTATT---A------GCTTGTAACTG--GT-CATC---AAA----TTC-T-GTTTGTTGTAATTTGTACATTCATTTTATTAAAA-AATGTTAATC-AGTGTTAAAC----A-TAATACATTTGTAA-TTTTTATATTCCCGAGGCAGAAGGATG--GTTAGGGTTACATATGACAATTGCA-ATATCTTTAAAAGTTACATAGGAAATTAATTTGTTG--TATGGGTCTAACCTGGGATGTACAGGATTTTACACCCATCTGTTAAATCAATACAC-CCT
gi|3 : T---CATAATCAAAC--TGTT---C------ACTTGTAATTG--TT-CATT---AAA----TTC-T-GTTCATTGTAATTTATACATTCA-TTTATTAAAA-T-TAGTGATCAA-TCT----C----GTTA---CATTTGTAA-TTTTT-T-TTCCTCCGGCAGAA-GGTG--GTT
gi|4 : ttatcctctgtaaccaaaatctcggcatttgattggctagctacgtatacgtacagggccggctgtaaaaacgcctttcacgtgacgatttatctacacacccggatatgcccgggtgtaaatgatatCCGGAT-ATGAATA-TGTTAGATGTTT-AGTAAACG-CATTT----------------C----------AGACTGAAATCCACATGCACAATT-AACACTA-----C------ATTT--AACTG--TT-CATT---GAA----C-----GATTGTTGTAATTTGTACTTTCATTTTACTAAAAGT-TGATGATT-A-TAT--AAC----G--A---AATTTATAAGTTTTCATATTCCCC---------GGTA--TTTA---------ACGACAACTACA-ATAT-TTTGAAAGTTACACAGGAAATAAATTCGTTA---ATGGATCTAACCAGGGGTGTA
gi|5 : CCGGAT-ATGAATACTGTT-GATGTTTAGTAA--CG-CATTT----------------C----------AGACTGAAATCAAT---CAAAATTTAACACTA------------ACATTTAACTG--TT-CATT---AAA----TT--------GTTGTAATTTGTACATTCATTTTACTAAAA-T-TGATGATT-A-TAT--AAC----G-CA---AATTTATAA-GTTTCATATTCCCCC-----------G--GTTA---TT---TACGACAACTACA-ATATTTTTGAAAGTTACACAGGAAATAAATTCGTTA--TATGGATCTAACCAGGGGTGTA
gi|6 : CGGGT-GTAAATAATGTT-AATATTTCATTA--CGTCA------A----------GTC----------AGACTGAAATCAAT---TAGAATTTAAC------------------TTGTAACTG--TT-CGGT---ATACATGTAC-TAGTAAGTTGTTATTTATGCATTCATTTGATTAAAA-T-TGTTGATT-G-TTT--AATTGAGG-TA---CATTTGTAA-TTTTTATATTCCCCCGGAAGAAGGGTG--GTTAGGGTTATATATGACAATTACA-AAATCTTTAAAATTTACA
gi|8 : GTT-GATATTTCATTT--TG-CTTTT----------------C----------AGACTGAAATCTAT---CAGAATT-AACATTATT---A------ACTTGCAACTG--TT-CATT---TAA----TTC-T-CTTAGTTGTAATTTGTACATTCATTTTAGTAAAA-
gi|9 : CCGGGT-GTAAATAATGTT-GATATTTCATAA--CG-CATTTAAAA----------G-C----------GGACTGAAATCAAT---CCGAATTTAATATCATTTTAA------ACTTCTAACTG--TT-CATT---AAA----TTC-T-GTa
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CTGGAAGAACTTCATTGATCCCCTGGTTCACAACTCGGTATGTATATCATTTTATATCCTATGTAACCGAAATCTCGGCATTTGATTGGCTACAGGACCGGGTGTAAAACGTCATTCATGTCATGATTTATTTACACCCGGCTATACCCTGGTTGATAT
Unaligned ( gi|11 ): CTGGGAAAAGTCGCATTTGTCTTCTCCGTTCATATTTGTAAAACATTAACTCCTAATGTTACCAAAATCATCGGGCATTTGATTGGCTTACGGGACCAGAGTGAAAA
Unaligned ( gi|12 ): TTTCCTATGTAACCAACTCATCGGCATTTGATTGGCTACAGGGCTGGATATACATGTATAAAACGCTTTTCACGTGATGATTTATTTACACCTGGTTATACCCG
Unaligned ( gi|13 ): CTTATTCCCTATGTAACAAAAATTTTGTCATTTGATTGGCTAACGAGCCGGGTAAAAAAAACAAAAAAAAAAACCAAGCAAAAACCGTGACGTAC
Unaligned ( gi|15 ): GATATAGTGTATTATTTCCTATGTAACTAAAAATCTCGGCATTGGATTGGGTAAAGGTTATCCCCGGGTGTAA
Unaligned ( gi|16 ): TTATTATTTCTTGTGTAATAAAAATCTCGGCATTTGATTGGGCATAGGGCCTAGTATAA
Unaligned ( gi|17 ): ACTTAAATTGTGAAACTCATATCCCTTTTGGGGTTGA