lowQualScore : 22222222222222222222222222222222222 1111111111111111111111111111111111111111111111111 3333333333333333333
lowQualScore : 1 333333333333333333333333333333333333333333333333333333333333333333333333 1111111 333333333333 22222222222222222222222222222222222 111111 11 1111111 5555555555555555555555555555555555 11111 22222 2222222222222222222222222222222222222222222222222 111111 1 222 2222 11 7777777 22222 33 2 1 2 888888888888 222 111 44444444444444444444 111 2222222 1111 1 111 1111 1 1111 111 111 111 999999999999999999999999999999999999 1111 333333333 1111 3333333333 222 555555555 33333 1 2222 111111 11 11 111 1 1 1111111111111111111 1 777 1 1
lowQualScore : 6 6 3 777777777777777777777777777777777777777777777777777777777777777777777777 3 3 9 3 8 44 888888 0000000 3 555555555555 66 4 4 2 11111111111111111111111111111111111 4 8888 4 4 777777 8 44 7 4444444 2222222222222222222222222222222222 3 4 44444 1 66 4 5 4 00000 0000000000000000000000000000000000000000000000000 6 6 777777 6 6 6 6 9 7 0 55 222 4444 33 0 8 2 3 88 4 6 8888888 77777 6 4 11 0 5 8 3 6 4 555555555555 4 3 1 111 777 3 00000000000000000000 111 6 1 99 3333333 0000 3 888 3 0 66 0 5 5555 6 1 1 0 2222 111 5 000 000 5 33 3 2 44 000000000000000000000000000000000000 7777 1 444444444 8888 1111111111 333 0 333333333 0 22222 3 0 8888 888888 88 7 1 0 00 2 222 4 2 5 5 0000000000000000000 6 5 6 4 6 2 000 3 5 3 3 5 6 6
lowQualScore : . . . ........................................................................ . . . . . .. ...... ....... . ............ .. . . . ................................... . .... . . ...... . .. . ....... .................................. . . ..... . .. . . . ..... ................................................. . . ...... . . . . . . . .. ... .... .. . . . . .. . . ....... ..... . . .. . . . . . . ............ . . . ... ... . .................... ... . . .. ....... .... . ... . . .. . . .... . . . . .... ... . ... ... . .. . . .. .................................... .... . ......... .... .......... ... . ......... . ..... . . .... ...... .. . . . .. . ... . . . . ................... . . . . . . ... . . . . . . .
lowQualScore : 8 7 3 000000000000000000000000000000000000000000000000000000000000000000000000 1 1 2 1 6 22 888888 0000000 1 333333333333 11 4 4 0 11111111111111111111111111111111111 0 5555 0 0 999999 5 33 6 5555555 2222222222222222222222222222222222 6 3 11111 1 11 4 0 2 33333 8888888888888888888888888888888888888888888888888 7 7 777777 7 7 7 7 2 5 8 22 000 0000 88 8 0 5 2 00 0 0 0000000 55555 0 0 55 0 0 5 0 0 0 555555555555 0 0 0 333 000 7 33333333333333333333 777 7 8 22 7777777 6666 7 999 1 1 99 2 0 6666 3 0 7 8 1111 666 3 000 000 3 99 6 4 66 333333333333333333333333333333333333 2222 0 888888888 8888 3333333333 333 7 333333333 7 00000 3 7 0000 333333 33 7 0 7 00 5 555 0 5 0 5 0000000000000000000 0 0 0 0 0 5 000 0 5 0 0 0 0 0
consensus : TTTATAAAATTGCCATAC-ATTTTGAGT-ATTTTACAA-CA--------TATACAAGTT----A---AT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATAGAA---TAA-AAAAGTAAG--AT-A-GTGCATT-ATTACTT-GTTT-------TTAGAAAAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAA-CTTT-----GAAAAGTTC-TACGTTTTGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCCCA----TAACA--A-TAAA-TGCACGTCGATGA---TAAATATA-------------TCGT----TG----AA---TGATA-G-------T-A-ATTTGTTC-----GTT-AAAC-A-ATG-TCTAGCAGTAGNATAT--TTTT---TTACANACAA-AAACACATGAACAACTTGGANTATCTATTAT-AAGTTGCAACGATGTAAATCNGATNTCAACGGTACAGTTGTGCTTTANCCTNGTGTGAGCTACATGTTAATNTTNAAAAACAT-TTTCCC-GNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCANACATTT--TTTAAAAGNTTTAATGGAAGTTGC----TTCCCTTGTGTGGATACT-AAGATTAT--TCCA-ATTTC-TGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATANTTCCAA---C---CTNCATTTTGGTAATGAATAATTC--AT-----GAATTTCGA--GCA--GCATTATCCAGAAAT--NGTGCTTCTAATATCGGGTG-CAATATTT---TGTAGAT-A-A-NGGA-ACTAA---ATTATT---------ATATAT-C---TTG-TATATN---GTTACANGNT-TAGCT--CTATNTCTTCTAACTTCNAAAGGNTCCCNGNCTGNTTNTAAGAATAATGAATT-------------------AGTTACGATTCTGGCTGCANGTAATTNAAC---TTNCTCTAACTTTTCTACGTCCGCNTCTGTGCACCCAGACCATACTTGAACAACATATTCAA
Reference ( gi|1 ) : TTTATAAAATTGACATAC-ATTTTGAGT-ATTTAACAA-CA--------GATACAAGTT----A---AT---GCA---A-------TATA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGCGTAC--AA------GTA-------A-CATATAGAA---GAA-AAAAATAAG--AT-A-GTACATT-ATCACCC-CCTCACCACCACCAAAAAAAAACCCTCGAC-CACATTAACTAAGAAAAGAT-TGAATAA-CTTT-----AAAAATTTC-CACACTTTGTA-----CAT----C----A----------G-A----GA-----TTCATTTCCCCA----TAACA--A-TAAA-TGCACATCAATGA---TAAATAT----T---------TCGT----TA----AA---TGATA-A-------T-A-ATTTGTTT-----ATT-AAAC-A-ATG-TGTAACAGTAGTATA---TTTG---TTACACACAA-AAACACATGAACAACTTGGATTGTCTACTATAAAGTTACAAAAAAATAAGTCAGAGTTTAA-AATACCATTATGTATTAACTTTGTGTG-----CAT-T--ATATTAAAAAATAT-TATCCC-AAATGAAAAATATCTTGGAGGTTT--TTCAACA----GTG---CTTT-GCAAACATTT--TTAAAAAGGTTTAATGGAAGTTGC----TTCCCTTGTCTGAATACT-ATGATTAT--TCCA-ATGTT-TGGCAGTGTCAGAAATAAAGGCTTT----ATTA-A-ATAATTCCAA---C---CTGCATTTTGGTAATGAATAATTC--ATT----AAATTTCGA--G----ACATTACCCAGAAAT--TGTGCTTCTAATATTTTGTG-C-ATATTT---TGTAGAT-AAAGAGGA-ACTAA---ATTACT---------ATGTAT-C---TTG-TACATA---GTTACAGGAT-TAGCT--CTATATTTCCTAACTTTTAAAGGGTCCCAGGCTGTTTCTAAACATAATGAATTTGAAGCAATATTTAAGACAAATTAAGATTCTAGCTGCATATAGTTGAACCTTTTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACACAGACCATACTTGAACAGCGTATTCAA
gi|20 : TTT-TAAAATTGCCATACCATTTTGAAT-ATTTTACAA-CA--------AA-AAAAGATCGACA---AT---ACACATG-------TACA---------------TTA-ATACCAATGTGTGTTTT-AG-AGTGTAA--AA------GTA-------A-CATATAGAA---TAA-GTAAATA
gi|17 : TTTATAAAATTGCCATACTCTTTTGAAT-ATTTTACAA-CATTAAAAAAGATGCAA--T----ACACAT---G-------------TACA---------------TTA-ATACCAAT-TGTGTTTT-AG-AGTGTATCAAA------GTA-------A-CATATAGAACTTGAA-AGTAAT--G--AT-ACGTACgt
gi|24 : agtTTTATAGAA--GGCATAC-ATTTTGTGC-ATTTTACAACCA--------TATATAAGTT----A---A---------------------A---------------TTAGATA-CAA--TGCGTGTCCAG-AG-GCAA--TA------TTA-------AGCATATAGAA---TAA-tgagagagaaatga
gi|21 : tatgcacagtaaTATAGAATTGTCATAC-ATTATGAGTAATTTAAC-A-CA--------GGTACAGATG----T---AT---ACA---A-------TACT---------------TGA-ATATTATT-TGTGTTTACAG-AGTGTAC--AC------GAA-------G-CGTA
gi|4 : ATAGGATTGCCATAC-ATTTTGAGT-ATTTTACAA-TA--------TATACAAGTT----A---GT---GCA---A-------TACA---------------TCA-ATACAAAT-TGTG-TTTCAA-GGTGTAC--AAGTATATGTA-------A-CATATAGAA---T---ATAAGTAAG--AT-A-GTGCATT-ATTAT--------TTGTCGTTAGAAAAA------CGAC-CGCATTCACCAAGAAAAGAT-TGAATAA-TTTTTGAAGAAAAGTTGCTTACATTTTGAAAAAGTCAT----C----ATTTGAACCAGA-A----GAT----TTCATTCCCTC-----TAAGAGTA-CAAA-TGCACATCGAT-A---T-AAT------------------------------AA---TGATA-T-------TAA-ATTTGTTC-----ATT-AAAC-A-ATG-TCTAGCAGTAGTATA---TTGT---TTTCAGACAA-AAACgcattatcaaattatagtaaaaa
gi|5 : ACAAAATTACCATAC-ATTTTGAGT-ATTC------------------TACTAGTT----A---AT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AATGTAC--TA------GTA-------A-CAT-----A---GAATAAAAGTAAGATAT-A-ATACATTGAT------TTTTATTA-----AAAGAAAAA----CGAC-CACGTTCACTAAG-AAAGAT-TAAATAA-CTTTTTG--AAAAGTTTCTTACGTTTTGT------CAT----G----A----------GAA----GAAAGATTTCA-TCCCCCA----TAACG--A-TAAA-TGCACATCAATGACTTTAAATATAACAT---------TTATAATGTATCGGAA---TGATA-GTACACTTT-A-ATTTGTTTGTTGGGTT-AAGCAA-ATGTTCTAGCAGTAGAATAT--TTTT---TTACCCACAACAAAGA-ATAAACAAcaaatggtaagcacaggcgat
gi|22 : ATAAAATTGCTATAC-ATTTTGAGT-ATTTCACAT-CA--------TATATAAATT----A---AT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGCTTTCCG-AGTGTAC--AA------GTA-------G-CATATAGAA---
gi|14 : ATACAATTGCC-TAC-ATTTTGAGT-ATTTTACAA-CA--------TTTACAAATT----G---AT---GCA---AACACATGTACA---------------TTA-ATACCAAT-TGTGTTTT-AT-GGTGTAC--AA------GTA-------A-CATATATAG---AAT-AAAAGTAAG--AT-G-GTGCATT-Atacattattacttgt
gi|9 : AAAATTG-CA-AC-ATTTTTAGT-ATTTTACAA-CA--------TTTACAAATT----A---AT---GCA---A-------TACACATGTACATAAATGATTT-ATAC-AAT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CATATAGAA------------TAA------------ATT-ATTACTT-GTTT-------TTAGAAAAAA-----CGAC-CACGTTCATCAAGAAAAGAT-TGAATAA-CTTT-----GAAAAGTTC-GACATTTTGAG-----CTT----TAGAAA----------G-A----GA-----TTCATTCCCCCA----TAACA--A-Tcttgtttttagaaaaaacgaccacattcacc
gi|7 : AATTGCCATAC-GTTTTGG---ATTTA-CA--CT--------TATACAAGTT----A---GT---GCA---A-------TCAA---------------TCA-ATACAAAT--GTGTTT-CAGCAGTGTAC--AA------GTACATGTTAA-CATATAGAA---TAT-AAG--TAAG--ATCA-GTGCATT--TTATTTGTCTT--------TAGAAAAA------CGACGCAGATCA-CCAAGAAA-GATGTGAATAAATTTT-----GAAAGTTT---ACATTTTGAA-----CAT----C----A----------G-A----AAGAGAATTCATTCCCCTC----TAAGA--GGTAAAATGCACAT-GAT-A---TAAATA------------------------------A---TGATATA-------T-A-ATTTGTTC-----ATT-AAAC-A-ATG-TCTAGCAGTAGT-TA---TTTGTTTTTACAGAC-A-AAACACA-GAA
gi|8 : ataggCATAC-ATTTTGAGT-ATTTTAC---CA--------TTTACACATT----A---ATTATGCA---A-------TACACATGTAAA-------TTA-ATTCCAGT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CTTATAGAT-------AAAAGTAAG--AT-A-GTGCATT-A---CTT-GTTT-------TTAGAAAAA------CGAC-CACATTCATCAAGAAAAGAT-TGAATAA-CTTT-----GAAAAGTTC-AACATTTTGAA-----CAT----C----A----------G-AAAGAGA-----TTCATTCCCCCA----TAACA--A-TAAA-TGCACATCAATAA---TAAATAT----A---------TCGT----TG----AA---TGAAC-G-------T-A-ATTTGTTC-----ATT-AAAC-A-ATG-TCTAGCAG
gi|11 : gcCATAC-ATTTCGAGT-ATTT------------------TACAA------------T---------A-------TATA---------------TTA-ATACCAAT-TGTGCTTTCAG-AGTGTAC--AA------ATA-------A-CATATAGAA---TAA-AAG--TAAG--AT-A-GTGCATT-ATTACTT-GTTT-------TTAGAAAAA------CGAC-CACATTCACCAAGAAAAGAT-TGAATAA-CTTT-----GAAAAGTTC-TACATTTTGAA-----CCT----CAGAAA----------G-A----GA-----TTCATTTCCCCA----CAA-A--A-TAAA-TGCAC
gi|26 : gc-ATACCAAT-TATGTTTTCAG-AGTGTAC--AA------GTA-------A-CAAATAGAA---T---AAAAGTAAG--AC-A-GTACATT-ATTACTT-GTTT-------TTAGAAAAA------CGAC-CATATTCACCAAGAAAA
gi|27 : AGAAAAAC----GAC-CAAACTCTTTTAGAGAAGAT-TGACTAA-CCTT-----GAAAAGTTC-TGAATTTTATA-----CAC----C----A----------A-A----AA-----taa
gi|23 : taaaagtaaatgatactaaatatccttttagaatAAAAAC----GTC-CACATTAGTGAAGAAAAGAT-TGAA--------------------TC-TATGTTTTATG-----CATTAGGC----A----------G-G----GA-----ATCACCCCCCCCCCCTTAACA--A-CAGA-TGCA
gi|3 : attttgtat-CACATTCATTACGAAAAGAT-TGAACAA-CTTC-----AAA---TAC-CATCC-----------CAT----C----C----------C-C----CA-----CCCA-CCCCCTT----TAGCA--A-CAGA-TGCAAGTC--T-A---TAAATGTACAAG---------TTAT----TG----AAATCTAGGA-G-------T-ATATTTGTTC-----ATTAAAAC-ATATC-T-TGCCACT-GCATATTTTTTT---TTACATACAA-agtctcaaaaaataa
gi|2 : AAGTAAGATTAGAT-TGGATAA-CTTT-----AAACAGTTC-TACA---TATA-----TAT----C----A----------ttagaagacttcgatctacatgaacccttccacatgaacaatttggattatctaataagttgcaacaatgtaaatctgatttaacaatacaattgtgttttaccctaatgtgatttaattttaaaaatctttttcccacatgagaaatattgttttgcatatatttcttaaaagttttaaaggatttgctaaattccctttaagtgtgttccata
gi|16 : AAAGTTC-TACGTTTTGTA-----CAT----G----A----------G-A----AAGATA-TTCATTCCCCCA----TAACG--A-TAAA-TGCACGTCAATGA---TAAATATACA-TTATAATGTATCGT----TG----AA---TGATA-G-------T-A-ATTTGTTT-----TTT-AAGC-A-ATG-TCTAGCAGTAGAATA---TTTT---TTACCCACAA-AAAcatacatgtaggaataatctccaatggaaacatgctgttctgtaatgtacaagtcattgaatgcaactaacaatgcttgctgttatgtagttttttttatataaaaatagatggtatcggtcttcttcccttccacataaacatctgaatatttattgttataacgatgtaaatcaaatatcaaggtacagttatgcttaaccttgtgtaagctacatgtatattcaaaaacatattcccatctgaaaaatattttggtgttttacagtgttactttgcacacatttcttcaactttttaattgaagttgcttcctttggtttaacactgagtatgttccacattcttacagatcaggaataagagatttgttgaatatttctaacctgtattttgacagtgaataatttcgagcaacattgcttcctatatcatgtaccatatttggatgtacatatgcatactagtatatccctatatactgaattgctatatgtatgttgcgaatctagttctatctcttctaactccaaaaggttccctaattaattataagaatatgaatt
gi|2 : CACATAAACATCT--GAATATTTATT-----GTTATAACGATGTAAATCAAATATCAA-GGTACAGTTATGC-TTAACCTTGTGTAAGCTACATGT--ATATTCAAAAACAT-ATTCCC-ATCTGAAAAATATTTTGG-TGTTT--T---ACA----GTGTTACTTT-GCACACATTT--CTTCAACTTTTTAATTGAAGTTGC----TTCCTTTGGTTTAACACT---GAGTATGTTCCACATTCT-TA-CAG-ATCAGGAATAAGAGATTT----GTTG-A-ATATTTCTAA---C---CTGTATTTTGACAGTGAATA---------------ATTTCGA--GCA--ACAT---------------TGCTTCCTATATCATGTACC-ATATTTGGATGTACAT-A---TGCATACTAGTATATCCCT---------ATATAC-TGAATTGCTATATGTATGTTGC-GAATCTAGTT--CTATCTCTTCTAACTCCAAAAGGTTCCCTAATTAATTATAAGAAT-ATGAATTaa
gi|3 : aagtaagattagattggataactttaaacagttctacatatatatcacatacatgtaggaataatctccaatggaaacatgctgttctgtaatgtacaagtcattgaatgcaactaacaatgcttgctgttatgtagttttttttatataaaaatagatggtatcggtcttcttcccttcCACATGAACAATTTGGATTATCTA--AT-AAGTTGCAACAATGTAAATCTGA-TTTAACAATACAATTGTGTTTTACCCTAATGTG------AT-TTAATTTTAAAAATCTT-TTTCCC-ACATGAGAAATAT-------------------------TG---TTTT-GCATATATTT--CTTAAAAGTTTTAAAGG-ATTTGCTAAATTCCCTT
gi|12 : cacattcattacgaaaagattgaacaacttcaaataccatcccatcccccacccaccccctttagcaacagatgcaagtctataaatgtacaagttattgaaatctaggagtatatttgttcattaaaacatatcttgccactgcatatttttttttacatacaattagaagacttcgatctacatgaacccttcAAATATCTATTCCTGAATGAAAAATATCTTGGTCGTTT--TTCAATATATAGTG---CTTT-GCAAACATTT--TT------------TGAAAA---C----TCCCCTTGTATGGATACTTAAGATTAT--TCCA-ATTTT-TGACAATGTCAGGAATAGAGGATTA----ATTA-A-ACAATTCTAG---C---CTATATTTTGGTAATGAATAATTC--ATtaagtgtgttccata
gi|25 : cAAATATTTTGGTGTTTT--AACAACA----ATA---ATTTAGCAGACATTTCTTTAAAA--TTTTAATAGAAGTGGC----TTCCCTCGTATAAACACC-ATAA-CAT--TCTA-ATTTC-TGG
gi|15 : tgctTATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAATATTT--TTTAAAAGATTTAATGTAAGTTGC----TTCCCTTGTGTGGATACT-TAGATTAT--TCCA-ATATC-TGGTAGTGTCAGGAATAAAGGATTT----ATCA-A-ATACTTCCAA---CTAACTACACATT--TAGTGAA
gi|19 : ATCTTGGTGGTCTGCTTCCCC------TG---CTTT-TCAAACATTT--TTAAAA-GATTTAATGGAAGCTGC----TTCCCTTGTGTGGATACT-AAGATTAT--TCCA-AT
gi|6 : AAAGATTTAATGGAAGTTGC----TTCCCTTGTGTGGATACT-TAGATTAT--TCCA-ATTTC-TGACAGTGTCAGGAATAAAGGATTT----ATTG-A-ATATTTCCAG---C---CTTCATTTTGG-------TAATTC--ATA----GAATTTCGA--GTA--GCA-TATCCAGAAAT--CGTGCTTCTAATAGTTGGTG-TAATATTC---TGTAGATAAAAGAGGT-ACTAA---ATTATT---------GTGTAT-C---TTG-TACAAA---GTGACATGCT-TAGCT--CTATTTCTTCTAACTTCTAAAGGGTTCCAGCCTGTTTCTAAAAATAATGAATT-------------------AGTTACGATTCTGGCTGCATGTAATTGAAC---TTTCTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCAtacttccagcttggtattgatttcgagtagcatatccagaaatagtgcttct
gi|13 : AGTTGC----ATCCCTTGTATAAACATT-AAG----T--TC---------TGACGATATCAAAAATAAAAGCTTTCTTGATTACG-GTAATTCCAA---C---CTCCA-GTTGGGGATGAATAATTTGAACTTGAAGAATTTTGA--GCGGAATGTT---CAGAAAA--TGTGCATCTCATATCAAGTG-CTATATTT---T
gi|10 : TGAGTCCT-ATAGTT-----CTA-AAATTATGACAGTATCAGAAATA-------T----ATTA-------TTCCAA---C---CTGCGTTTTGGTAATGAA-AA------------GAATTTCGATTG----GAA-TATCCAGCAGCCATATGCTTCTAATATCGGGTA-CAATATTA---TGTCGAT-ACATGGGA-ACCAA---ATTATTGTATGTTTCATATATAC---ATG-TATATT---GTTACAAGTT-TAACTTCCGAAAGTTCCTGGCTT
gi|19 : T----ACTA-AGATTATTCCAATTAC---TTCCAGCTTGGTATTGA-------------------TTTCGA--GTA--GCAT-ATCCAGAAAT--AGTGCTTCTgtttct
gi|28 : atcttggtggtctgcttcccctgcttttcaaacatttttaaaagatttaatggaagctgcttcccttgtgtggaTATCCAGAAAT--AGTGCTTCTAA
gi|18 : agtagcaCTGCAAATAATTTAAC---TTGTTCTAACTTT-CTACGTCCGCGTCTGTGCACCCAGACCATACTTGAACAACATATTCAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111 1111111111111111111
lowQualScore : 1111 333333333333333333333333333333 222222 1111111 1111111 4444444444444444444444444444444444 1111111 1 6666666666666666666666666666666 222222222 111111 22222 000000000000000000000000000000000000000000000000000000 2222222 1 222 6666666666666 11 11111 111 1111 6666666666666666666 3 111 1 111 333333333333 4444444444444 22222 1 1111 0000000000000000000 222
lowQualScore : 6 333 3 4 0000 555 111111111111111111111111111111 2 2 7 2 33 888888 9999999 2 44 222222 99999 3 0 44 3333333 555 7777 99999 3 3 55 7777 99 4 999999 0000000 9999999999999999999999999999999999 666 9999999 1 55 3 4 4 7 2 888 2222222222222222222222222222222 888 0 111111111 5 5 888888 5 5 11 1 77 999 1 00000 333333333333333333333333333333333333333333333333333333 7 1 9999999 0 0 1 1 2 444 0 0 0 7 1 1 7777777777777 1 1 1 33 33 1 4 77 22 33333 000 5 1 22 5 0 9999 777 0 5 33 0 1 0000 999 2 888 888 1 1111111111111111111 6 3 000 33 99 0 444 777777777777 8888888888888 11111 0 8888 1 1 3 0 4 0 0 1 1 1 1 1 1 0 7 3333333333333333333 2 11 1 333 11 0 7 77 1 0
lowQualScore : . ... . . .... ... .............................. . . . . .. ...... ....... . .. ...... ..... . . .. ....... ... .... ..... . . .. .... .. . ...... ....... .................................. ... ....... . .. . . . . . ... ............................... ... . ......... . . ...... . . .. . .. ... . ..... ...................................................... . . ....... . . . . . ... . . . . . . ............. . . . .. .. . . .. .. ..... ... . . .. . . .... ... . . .. . . .... ... . ... ... . ................... . . ... .. .. . ... ............ ............. ..... . .... . . . . . . . . . . . . . . . ................... . .. . ... .. . . .. . .
lowQualScore : 2 999 1 0 8888 444 222222222222222222222222222222 9 9 9 9 99 222222 3333333 9 22 444444 22222 1 4 66 0000000 888 7777 11111 3 6 00 7777 22 8 666666 1111111 3333333333333333333333333333333333 444 5555555 4 00 6 0 4 4 8 888 1111111111111111111111111111111 888 2 555555555 0 0 888888 0 0 11 4 99 666 0 00000 888888888888888888888888888888888888888888888888888888 3 0 0000000 7 7 0 0 0 777 7 7 7 3 0 0 3333333333333 0 0 2 88 00 7 3 99 00 66666 000 7 0 00 9 1 4444 888 9 0 88 1 3 6666 000 8 888 888 0 0000000000000000000 3 0 000 77 66 8 000 888888888888 5555555555555 55555 0 5555 0 0 2 2 5 2 8 0 0 0 0 0 0 7 3 3333333333333333333 5 77 0 333 77 7 3 33 0 7
consensus : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--TTTTT--ACACACAA-----AAA--------------------------C--------ACATG--------------AACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTCAA-AATACAATTATGTTTTAACCTTGTGTGA--T-CAT-TTAATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCAT-ATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGATA-A--AGGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
Reference ( family-893 ) : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----GTTAAAC-AATG-TCTAGCAGTAGNATATT--TTTTT--ACANACAA-----AAA--------------------------C--------ACATG--------------AACAACTTGGANTATCTATTATAA-GTTGCAACGATGTAAATCNGATNTCAACGGTACAGTTGTGCTTTANCCTNGTGTGAGCTACATGTTAATNTTNAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCANACATTTTTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATANTTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGCAGCATTATCCAGAA---ATNGTGCTTCTAATATCGGGTGCAATATTT---TGTAGATA-A--NGGA---ACTAAATTAT---T---------ATATAT-C---TTG-TATAT---NGTTACANGNTTAGCTCTATNTCTTCTAACTTCNAAAGGNTCCCNGNCTGNTTNTAAGAATAATGAATT-------------------AGTTACGATTCTGGCTGCANGTAATTNAAC---TTNCTCTAACTTTTCTACGTCCGCNTCTGTGCACCCAGACCATACTTGAACAACATATTCAA
gi|1 : TTTATAAAATTGACATAC-ATTTTGAGTATTTAACAA-CAG-ATACAAGTT----AAT---GCA---A-------TATA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGCGTAC--AA------GTA-------A-CATATA--GAAGAAAAAAATAA--G--AT-AGTACATTATCACCCCCTCACCACCACCAAA--A----AAAAACCCTCGAC-CACATTAACTAAGAAAAGAT-TGAATAAC--TTT----AAAAATTT--CCACACTT------TGTA-----CAT----C----A----------G-A----GA-----TTCATTTCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATGA---TAAATATT------------TCGTT------------AAA---TGATA-A-------T-A-ATTTGTTT-----ATTAAAC-AATG-TGTAACAGTAGTATATT--TGTT---ACACACAA-----AAA--------------------------C--------ACATG--------------AACAACTTGGATTGTCTACTATAAAGTTACAAAAAAATAAGTCAGAGTTTAA-AATACCATTATGTATTAACTTTGTGTG-----CAT--TA-TATTAAAAAATATTA--TCCCAAATGAAAAATATCTTGGAGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTTTAAAAAGGTTTAATGGAAGTTGC----TTCCCTT---GTCTGAATACT-ATGATTATTCCAATGTTTGGCAGTGTCAGAAATAAAGGCTTT----ATTA-A-ATAATTCCAA---C---CTGCATTTTGGTAATGAATAATTC-------ATT-AAATTTCGAG--ACATTACCCAGAA---ATTGTGCTTCTAATATTTTGTGC-ATATTT---TGTAGATA-AAGAGGA---ACTAAATTAC---T---------ATGTAT-C---TTG-TACAT---AGTTACAGGATTAGCTCTATATTTCCTAACTTTTAAAGGGTCCCAGGCTGTTTCTAAACATAATGAATTTGAAGCAATATTTAAGACAAATTAAGATTCTAGCTGCATATAGTTGAACCTTTTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACACAGACCATACTTGAACAGCGTATTCAA
gi|10 : AAATTATGACAGTATCAGAAATA-------T----ATTA-------TTCCAA---C---CTGCGTTTTGGTAATGAA-AA--------------GAATTTCGATTGGAAT-ATCCAGCAGCCATA-TGCTTCTAATATCGGGTACAATATTA---TGTCGATACAT-GGGA---ACCAAATTAT---TGTATGTTTCATATATAC---ATG-TATAT---TGTTACAAGTT---------------TAACTTCCGAAAGTTCCTGGCTTGTTTCT
gi|11 : tgagtcctatagttctaGCCATAC-ATTTCGAGTATTTTACAA-TAT-ATA-------------------------------------------------TTA-ATACCAAT-TGTGCTTTCAG-AGTGTAC--AA------ATA-------A-CATATA--GAATAAAA--GTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AA-A-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACATTT------TGAA-----CCT----CAGAAA----------G-A----GA-----TTCATTTCCC---CA-------CAA-A--A-TAAA-TGCAC
gi|12 : AAATATCTATTCCTGAATGAAAAATATCTTGGTCGTTT--TTCAATATATAGTG---CTTT-GCAAACATTTTTTGAAAA---------------C----TCCCCTT---GTATGGATACTTAAGATTATTCCAATTTTTGACAATGTCAGGAATAGAGGATTA----ATTA-A-ACAATTCTAG---C---CTATATTTTGGTAATGAATAATTC-------A-T-
gi|13 : cAGTTGC----ATCCCTT---GTATAAACATT-AAG-----------TTCTGACGATATCAAAAATAAAAGCTTTCTTGATTACG-GTAATTCCAA---C---CTCCAGTTGGG-GATGAATAATTTGAACTTGA-A-GAATTTTGAGCGGAAT-GTTCAGAA---AATGTGCATCTCATATCAAGTGCTATATTT---T
gi|14 : ATACAATTGCC-TAC-ATTTTGAGTATTTTACAA-CAT-TTACAAATT----GAT---GCA---AACACATGTACA---------------TTA-ATACCAAT-TGTGTTTT-AT-GGTGTAC--AA------GTA-------A-CATATATAGAATAAAA--GTAA--G--AT-GGTGCATTA---CTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACC
gi|15 : TATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAATATTTTTTAAAAGATTTAATGTAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATATCTGGTAGTGTCAGGAATAAAGGATTT----ATCA-A-ATACTTCCAA---CTAACTACACATT--TAGTGAA
gi|16 : AAAGTT--CTACGTTT------TGTA-----CAT----G----A----------G-A----AAGATA-TTCATTCCCC---CA-------TAACG--A-TAAA-TGCACGT-CAATGA---TAAATATACATTATAATGTATCGTT------------GAA---TGATA-G-------T-A-ATTTGTTT-----TTTAAGC-AATG-TCTAGCAGTAGAATA-T--TTTTT--ACCCACAA-----AAA--------------------------
gi|17 : TTTATAAAATTGCCATACTCTTTTGAATATTTTACAA-CATTAAAAAAGATGC--AAT---ACACATG-------TACA---------------TTA-ATACCAAT-TGTGTTTT-AG-AGTGTATCAAA------GTA-------A-CATATA--GAACTTGAAAGTAAT-G--AT-Aaa
gi|18 : agtCTGCAAATAATTTAAC---TTGTTCTAACTTT-CTACGTCCGCGTCTGTGCACCCAGACCATACTTGAACAACATATTCAAcgtactgagagagaaatga
gi|19 : tattaATCTTGGTGGTCTGCTTCCCC------TG---CTTT-TCAAACATTTTT-AAAAGATTTAATGGAAGCTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTACTattgaaataagatattccttgacacatttatttaataatttttttagtaatcaaagttgttgtttt
gi|19 : T----ACTA-AGATTATTCCAATTAC---TTCCAGCTTGGTATTGA---------------------TTTCGAGTAGCAT-ATCCAGAA---ATAGTGCTTCTtccagcttggtattgatttcgagtagcatatccagaaatagtgcttct
gi|2 : atcttggtggtctgcttcccctgcttttcaaacatttttaaaagatttaatggaagctgcttcccttgtgtggaAAGATTAGAT-TGGATAAC--TTT----AAACAGTT--CTACATATATATCACATA-----CATG---T----A----------G-G----AA-----T--AATCTCC---AA-------TGGAA--A-CA---TGC-TGTTCTGTAA---TGTACAAG------------TCATT------------GAA---TG------------C-A-ACT--------------AAC-AATG--CTTGCTGTTATGTAGT--TTTTT--TTATATAA-----AAATAGATGGTATCGGTCTTCTTCCCTTCC--------ACATA--------------AACATCT--GAATATTTATT-----GTTATAACGATGTAAATCAAATATCAA-GGTACAGTTATGCTT-AACCTTGTGTAAGCTACATGT--ATATTCAAAAACATAT--TCCCATCTGAAAAATATTTTGGTG--TT--TT--ACA----GTGTTACTTT-GCACACATTTCTTCAACTTTTTAATTGAAGTTGC----TTCCTTT---GGTTTAACACT-GAGTATGTTCCACATTCTTACAG-ATCAGGAATAAGAGATTT----GTTG-A-ATATTTCTAA---C---CTGTATTTTGACAGTGAAT-----------------AATTTCGAGCAACAT----------------TGCTTCCTATATCATGTACCATATTTGGATGTACAT--A--TGCAT--ACTAGTATATCCCT---------ATATAC-TGAATTGCTATATGTATGTTGCGAATCTAGTTCTATCTCTTCTAACTCCAAAAGGTTCCCTAATTAATTATAAGAAT-ATGAATT-------------------
gi|20 : aagtTTT-TAAAATTGCCATACCATTTTGAATATTTTACAA-CAA-A-AAAAGATCGACAAT---ACACATG-------TACA---------------TTA-ATACCAATGTGTGTTTT-AG-AGTGTAA--AA------GTA-------A-CATATA--GAAT----AAGTAA-----AT-AGT
gi|21 : TATAGAATTGTCATAC-ATTATGAGTAATTTAACA-CAG-GTACAGATG----TAT---ACA---A-------TACT---------------TGA-ATATTATT-TGTGTTTACAG-AGTGTAC--AC------GAA-------G-CGTA
gi|22 : ATAAAATTGCTATAC-ATTTTGAGTATTTCACAT-CAT-ATATAAATT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGCTTTCCG-AGTGTAC--AA------GTA-------G-CATATA--GAATA---------------------CATTATTACTTGTgcattatcaaattatagtaaaaa
gi|23 : --A----AAAA-----CGTC-CACATTAGTGAAGAAAAGAT-TGAA--------------------T--CTATGTTT------TATG-----CATTAGGC----A----------G-G----GA-----ATCACCCCCC---CCCCCT---TAACA--A-CAGA-TGCAAGT-C
gi|24 : attttgtatTTTATAGAA--GGCATAC-ATTTTGTGCATTTTACAACCAT-ATATAAGTT----AA---------------------A---------------TTAGATA-CAA--TGCGTGTCCAG-AG-GCAA--TA------TTA-------AGCATATA--GAATAAtcaaaaaataa
gi|25 : tatgcacagtaaAAATATTTTGGTGTTTT--AACAACA----ATA---ATTTAGCAGACATTTCTTTAAAATTTTAATAGAAGTGGC----TTCCCTC---GTATAAACACC-ATAA-CATTCTAATTTCTG
gi|26 : tgct-ATACCAAT-TATGTTTTCAG-AGTGTAC--AA------GTA-------A-CAAATA--GAAT--AAAAGTAA--G--AC-AGTACATTATTACTTGTTT-------TTAG---A----AAAA-----CGAC-CATATTCACCAAGAAAAg
gi|27 : AAAAGTAAATG--AT-ACTAAAT-ATC-----CTT-------TTAGA--ATAGAAAAA-----CGAC-CAAACTCTTTTAGAGAAGAT-TGACTAAC--CTT----GAAAAGTT--CTGAATTT------TATA-----CAC----C----A----------A-A----AA-----taa
gi|28 : tAGTAGCAT-ATCCAGAA---ATAGTGCTTCTAA
gi|3 : -CACATTCATTACGAAAAGAT-TGAACAAC--TTC----AAA--------TAC-------------------CAT----C------------------------------CCATCCCCCACCCACCCCCTTTAGCA--A-CAGA-TGCAAGT-C--T-A---TAAATGTACAAG--------TTATT------------GAAATCTAGGA-G-------T-ATATTTGTTC-----ATTAAAA-CATA-TCTTGCCACTGCATATT--TTTTTTTACATACAATTAGAAGA--------------------------CTTCGATCTACATGAACCCTTCCACATGAACAATTTGGATTATCTA--ATAA-GTTGCAACAATGTAAATCTGATTT-AACAATACAATTGTGTTTTACCCTAATGTGA--T-----TTAATTTTAAAAATCTTTT--TCCCACATGAGAAATAT-------------------------TG---TTTT-GCATATATTTCTTAAAAGTTTTAAAGG-ATTTGCTAAATTCCCTTTAAGTGTG
gi|4 : ATAGGATTGCCATAC-ATTTTGAGTATTTTACAA-TAT-ATACAAGTT----AGT---GCA---A-------TACA---------------TCA-ATACAAAT-TGTG-TTTCAA-GGTGTAC--AAGTATATGTA-------A-CATATA--GAAT--ATAAGTAA--G--AT-AGTGCATTATTATTTGTCG-------TTAG---A----AAAA-----CGAC-CGCATTCACCAAGAAAAGAT-TGAATAAT--TTTTGAAGAAAAGTTGCTTACATTT------TGAAAAAGTCAT----C----ATTTGAACCAGA-A----GAT----TTCATTCCCT---C--------TAAGAGTA-CAAA-TGCACAT-CGAT-A---T-AAT---------------------------------AA---TGATA-T-------TAA-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--GTTTT---CAGACAA-----AAA--------------------------C--------ttccata
gi|5 : ACAAAATTACCATAC-ATTTTGAGTATTCTAC--------TA---GTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AATGTAC--TA------GTA-------A-C--ATA--GAAT--AAAAGTAA--GATAT-AATACATTG--ATTT-TTA-------TTAAAAGA----AAAA-----CGAC-CACGTTCACTAAG-AAAGAT-TAAATAACTTTTT----GAAAAGTTTCTTACGTTT------TGT------CAT----G----A----------GAA----GAAAGATTTCA-TCCCC---CA-------TAACG--A-TAAA-TGCACAT-CAATGACTTTAAATATA------------ACATTTATAATGTATCGGAA---TGATA-GTACACTTT-A-ATTTGTTTGTTGGGTTAAGCAAATGTTCTAGCAGTAGAATATT--TTTTT--ACCCACAAC----AAA--------------------------G--------A-ATA--------------AACAAcaaatggtaagcacaggcgat
gi|6 : AAAGATTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTG-A-ATATTTCCAG---C---CTTCATTTTGGTAAT-------TC-------A-TAGAATTTCGAGTAGCAT-ATCCAGAA---ATCGTGCTTCTAATAGTTGGTGTAATATTC---TGTAGATA-A--AAGAGGTACTAAATTAT---T---------GTGTAT-C---TTG-TACAA---AGTGACATGCTTAGCTCTATTTCTTCTAACTTCTAAAGGGTTCCAGCCTGTTTCTAAAAATAATGAATT-------------------AGTTACGATTCTGGCTGCATGTAATTGAAC---TTTCTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCA
gi|7 : AATTGCCATAC-GTTTTGGAT---TTACA--CTT-ATACAAGTT----AGT---GCA---A-------TCAA---------------TCA-ATACAAAT--GTGTTT-CAGCAGTGTAC--AA------GTACATGTTAA-CATATA--GAATATAA--GTAA--G--ATCAGTGCATT-TTATTTGTCT-------TTAGA--A----AAA------CGACGCAGAT-CACCAAGAAA-GATGTGAATAAA--TTT----TGAAAGTT---TACATTT------TGAA-----CAT----C----A----------G-A----AAGAGAATTCATTCCCC---TC-------TAAGA--GGTAAAATGCACAT--GAT-A---TAAATA---------------------------------A---TGATATA-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGT-TATTTGTTTTT--ACAGAC-A-----AAA--------------------------C--------ACA-G--------------AA
gi|8 : ataggGCCATAC-ATTTTGAGTATTTTAC---CAT-TTACACATT----AATTATGCA---A-------TACACATGTAAA-------TTA-ATTCCAGT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CTTATA--GA-TAAAA--GTAA--G--AT-AGTGCATTA---CTTGTTT-------TTAGA--A----AAA------CGAC-CACATTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CAACATTT------TGAA-----CAT----C----A----------G-AAAGAGA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATAA---TAAATATA------------TCGTT------------GAA---TGAAC-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAG
gi|9 : AAAATTGC-A-AC-ATTTTTAGTATTTTACAA-CAT-TTACAAATT----AAT---GCA---A-------TACACATGTACATAAATGATTT-ATAC-AAT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAA---------------------TTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACGTTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CGACATTT------TGAG-----CTT----TAGAAA----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-T
Alignments
lowQualScore : 1111111111111111111
lowQualScore : 1111 333333333333333333333333333333 222222 1111111 1111111 4444444444444444444444444444444444 1111111 1 6666666666666666666666666666666 222222222 11111 111111 111 444444444444444444 777777777777777777777777777777777 2222222 11 66666666666 11 1111111111111 111 1111 6666666666666666666 111 111 333333333333 4444444444444 22222 1 1111 0000000000000000000 222
lowQualScore : 6 333 3 4 0000 555 111111111111111111111111111111 2 2 7 2 33 888888 9999999 2 44 222222 99999 3 0 44 3333333 555 7777 99999 3 3 55 7777 99 4 999999 0000000 9999999999999999999999999999999999 666 9999999 1 55 3 4 4 7 2 888 2222222222222222222222222222222 888 0 111111111 5 5 22222 5 5 00 1 222222 000 1 111111111111111111 5 222222222222222222222222222222222 0 7 8888888 0 3 22 44444444444 1 33 33 1 4 6666666666666 000 5 0 4 0 5 0 9999 777 0 5 33 0 1 0000 999 3 888 888 1 2 1111111111111111111 2 5 0 000 33 77 8 444 555555555555 8888888888888 11111 0 8888 1 1 3 0 4 0 0 1 1 4 1 7 3333333333333333333 1 333 7
lowQualScore : . ... . . .... ... .............................. . . . . .. ...... ....... . .. ...... ..... . . .. ....... ... .... ..... . . .. .... .. . ...... ....... .................................. ... ....... . .. . . . . . ... ............................... ... . ......... . . ..... . . .. . ...... ... . .................. . ................................. . . ....... . . .. ........... . .. .. . . ............. ... . . . . . . .... ... . . .. . . .... ... . ... ... . . ................... . . . ... .. .. . ... ............ ............. ..... . .... . . . . . . . . . . . . ................... . ... .
lowQualScore : 2 999 1 0 8888 444 222222222222222222222222222222 9 9 9 9 99 222222 3333333 9 22 444444 22222 1 4 66 0000000 888 7777 11111 3 6 00 7777 22 8 666666 1111111 3333333333333333333333333333333333 444 5555555 4 00 6 0 4 4 8 888 1111111111111111111111111111111 888 2 555555555 0 0 55555 0 0 77 4 333333 000 7 777777777777777777 7 666666666666666666666666666666666 8 3 7777777 7 7 00 33333333333 2 88 00 7 3 9999999999999 000 7 3 0 3 9 1 4444 888 9 0 88 1 3 6666 000 5 888 888 0 0 0000000000000000000 3 7 1 000 77 44 8 000 000000000000 5555555555555 55555 0 5555 2 2 2 2 5 2 8 2 0 2 0 3 3333333333333333333 0 333 3
consensus : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGATAN--A--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
Reference ( family-893 ) : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTCAAAATACAATTATGTTTTAACCTTGTGTGA--T-CATTTAATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGATAA--A--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
gi|1 : TTTATAAAATTGACATAC-ATTTTGAGTATTTAACAA-CAG-ATACAAGTT----AAT---GCA---A-------TATA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGCGTAC--AA------GTA-------A-CATATA--GAAGAAAAAAATAA--G--AT-AGTACATTATCACCCCCTCACCACCACCAAA--A----AAAAACCCTCGAC-CACATTAACTAAGAAAAGAT-TGAATAAC--TTT----AAAAATTT--CCACACTT------TGTA-----CAT----C----A----------G-A----GA-----TTCATTTCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATGA---TAAATATT------------TCGTT------------AAA---TGATA-A-------T-A-ATTTGTTT-----ATTAAAC-AATG-TGTAACAGTAGTATATT--T---GTT----ACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTGTCTACTATAAAGTTACAAAAAAATAAGTCAGAGTTTAAAATACCATTATGTATTAACTTTGTGTG-----CATT--ATATTAAAAAATATTA--TCCCAAATGAAAAATATCTTGGAGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTTTAAAAAGGTTTAATGGAAGTTGC----TTCCCTT---GTCTGAATACT-ATGATTATTCCAATGTTTGGCAGTGTCAGAAATAAAGGCTTT----ATTA-A-ATAATTCCAA---C---CTGCATTTTGGTAATGAATAATTC-------ATT-AAATTTCGAG--ACATTACCCAGAA---ATTGTGCTTCTAATATTTTGTGC-ATATTT---TGTAGATAAAGA--GGA---ACTAAATTAC---T---------ATGTAT-C---TTG-TACAT---AGTTACAGGATTAGCTCTATATTTCCTAACTTTTAAAGGGTCCCAGGCTGTTTCTAAACATAATGAATTTGAAGCAATATTTAAGACAAATTAAGATTCTAGCTGCATATAGTTGAACCTTTTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACACAGACCATACTTGAACAGCGTATTCAA
gi|10 : AAATTATGACAGTATCAGAAATA-------T----ATTA-------TTCCAA---C---CTGCGTTTTGGTAATGAA-AA--------------GAATTTCGATTGGAA-TATCCAGCAGCCATA-TGCTTCTAATATCGGGTACAATATTA---TGTCGATAC--ATGGGA---ACCAAATTAT---TGTATGTTTCATATATAC---ATG-TATAT---TGTTACAAGTT---------------TAACTTCCGAAAGTTCCTGGCTTGTTTCT
gi|11 : tgagtcctatagttctaGCCATAC-ATTTCGAGTATTTTACAA-TAT-ATA-------------------------------------------------TTA-ATACCAAT-TGTGCTTTCAG-AGTGTAC--AA------ATA-------A-CATATA--GAATAAAA--GTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AA-A-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACATTT------TGAA-----CCT----CAGAAA----------G-A----GA-----TTCATTTCCC---CA-------CAA-A--A-TAAA-TGCAC
gi|12 : AAATATCTATTCCTGAATGAAAAATATCTTGGTCGTTT--TTCAATATATAGTG---CTTT-GCAAACATTTTTTGAAAA---------------C----TCCCCTT---GTATGGATACTTAAGATTATTCCAATTTTTGACAATGTCAGGAATAGAGGATTA----ATTA-A-ACAATTCTAG---C---CTATATTTTGGTAATGAATAATTC-------A-T-
gi|13 : cAGTTGC----ATCCCTT---GTATAAACATT-AAG-----------TTCTGACGATATCAAAAATAAAAGCTTTCTTGATTACG-GTAATTCCAA---C---CTCCA-GTTGGGGATGAATAATTTGAACTTGA-A-GAATTTTGAGCGGAA-TGTTCAGAA---AATGTGCATCTCATATCAAGTGCTATATTT---T
gi|14 : ATACAATTGCC-TAC-ATTTTGAGTATTTTACAA-CAT-TTACAAATT----GAT---GCA---AACACATGTACA---------------TTA-ATACCAAT-TGTGTTTT-AT-GGTGTAC--AA------GTA-------A-CATATATAGAATAAAA--GTAA--G--AT-GGTGCATTA---CTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACC
gi|15 : TATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAATATTTTTTAAAAGATTTAATGTAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATATCTGGTAGTGTCAGGAATAAAGGATTT----ATCA-A-ATACTTCCAA---CTAACTACACATT--TAGTGAA
gi|16 : AAAGTT--CTACGTTT------TGTA-----CAT----G----A----------G-A----AAGATA-TTCATTCCCC---CA-------TAACG--A-TAAA-TGCACGT-CAATGA---TAAATATACATTATAATGTATCGTT------------GAA---TGATA-G-------T-A-ATTTGTTT-----TTTAAGC-AATG-TCTAGCAGTAGAATA-T--T---TTT---TACC-----------------CACAA-AAA--------------------------
gi|17 : TTTATAAAATTGCCATACTCTTTTGAATATTTTACAA-CATTAAAAAAGATGC--AAT---ACACATG-------TACA---------------TTA-ATACCAAT-TGTGTTTT-AG-AGTGTATCAAA------GTA-------A-CATATA--GAACTTGAAAGTAAT-G--AT-Aaa
gi|18 : agtCTGCAAATAATTTAAC---TTGTTCTAACTTT-CTACGTCCGCGTCTGTGCACCCAGACCATACTTGAACAACATATTCAAcgtactgagagagaaatga
gi|19 : tattaATCTTGGTGGTCTGCTTCCCC------TG---CTTT-TCAAACATTT-TTAAAAGATTTAATGGAAGCTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTACTattgaaataagatattccttgacacatttatttaataatttttttagtaatcaaagttgttgtttt
gi|19 : T----ACTA-AGATTATTCCAATTAC---TTCCAGCTTGGTATTGA---------------------TTTCGAGTAGCA-TATCCAGAA---ATAGTGCTTCTtccagcttggtattgatttcgagtagcatatccagaaatagtgcttct
gi|2 : atcttggtggtctgcttcccctgcttttcaaacatttttaaaagatttaatggaagctgcttcccttgtgtggaAAGATTAGAT-TGGATAAC--TTT----AAACAGTT--CTACATATATATCACATA-----CATG---T----A----------G-G----AA-----T--AATCTCC---AA-------TGGAA--A-CA---TGC-TGTTCTGTAA---TGTACAAG------------TCATT------------GAA---TG------------C-A-ACT--------------AAC-AATG--CTTGCTGTTATGTAGT--T---TTT---TTTA-----------------TATAA-AAATAGATGGTATCGGTCTTCTTCCCTTCC------ACATAAACATCT--GAATATTTATT-----GTTATAACGATGTAAATCAAATATCAAGGTACAGTTATG-CTTAACCTTGTGTAAGCTACATGT-ATATTCAAAAACATAT--TCCCATCTGAAAAATATTTTGGT-GTTT--T---ACA----GTGTTACTTT-GCACACATTTCTTCAACTTTTTAATTGAAGTTGC----TTCCTTT---GGTTTAACACT-GAGTATGTTCCACATTCTTACAG-ATCAGGAATAAGAGATTT----GTTG-A-ATATTTCTAA---C---CTGTATTTTGACAGTGAAT-----------------AATTTCGAGCAACA-T---------------TGCTTCCTATATCATGTACCATATTTGGATGTACATAT--G--CAT---ACTAGTATATCCCT---------ATATAC-TGAATTGCTATATGTATGTTGCGAATCTAGTTCTATCTCTTCTAACTCCAAAAGGTTCCCTAATTAATTATAAGAAT-ATGAATT-------------------
gi|20 : aagtTTT-TAAAATTGCCATACCATTTTGAATATTTTACAA-CAA-A-AAAAGATCGACAAT---ACACATG-------TACA---------------TTA-ATACCAATGTGTGTTTT-AG-AGTGTAA--AA------GTA-------A-CATATA--GAAT----AAGTAA-----AT-AGT
gi|21 : TATAGAATTGTCATAC-ATTATGAGTAATTTAACA-CAG-GTACAGATG----TAT---ACA---A-------TACT---------------TGA-ATATTATT-TGTGTTTACAG-AGTGTAC--AC------GAA-------G-CGTA
gi|22 : ATAAAATTGCTATAC-ATTTTGAGTATTTCACAT-CAT-ATATAAATT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGCTTTCCG-AGTGTAC--AA------GTA-------G-CATATA--GAATA---------------------CATTATTACTTGTgcattatcaaattatagtaaaaa
gi|23 : --A----AAAA-----CGTC-CACATTAGTGAAGAAAAGAT-TGAA--------------------T--CTATGTTT------TATG-----CATTAGGC----A----------G-G----GA-----ATCACCCCCC---CCCCCT---TAACA--A-CAGA-TGCAAGT-C
gi|24 : attttgtatTTTATAGAA--GGCATAC-ATTTTGTGCATTTTACAACCAT-ATATAAGTT----AA---------------------A---------------TTAGATA-CAA--TGCGTGTCCAG-AG-GCAA--TA------TTA-------AGCATATA--GAATAAtcaaaaaataa
gi|25 : tatgcacagtaaAAATATTTTGGTGTTTT--AACAACA----ATA---ATTTAGCAGACATTTCTTTAAAATTTTAATAGAAGTGGC----TTCCCTC---GTATAAACACC-ATAA-CATTCTAATTTCTG
gi|26 : tgct-ATACCAAT-TATGTTTTCAG-AGTGTAC--AA------GTA-------A-CAAATA--GAAT--AAAAGTAA--G--AC-AGTACATTATTACTTGTTT-------TTAG---A----AAAA-----CGAC-CATATTCACCAAGAAAAg
gi|27 : AAAAGTAAATG--AT-ACTAAAT-ATC-----CTT-------TTAGA--ATAGAAAAA-----CGAC-CAAACTCTTTTAGAGAAGAT-TGACTAAC--CTT----GAAAAGTT--CTGAATTT------TATA-----CAC----C----A----------A-A----AA-----taa
gi|28 : tAGTAGCA-TATCCAGAA---ATAGTGCTTCTAA
gi|3 : -CACATTCATTACGAAAAGAT-TGAACAAC--TTC----AAA--------TAC-------------------CAT----C------------------------------CCATCCCCCACCCACCCCCTTTAGCA--A-CAGA-TGCAAGT-C--T-A---TAAATGTACAAG--------TTATT------------GAAATCTAGGA-G-------T-ATATTTGTTC-----ATTAAAA-CATA-TCTTGCCACTGCATATT--TTTTTTTACATACAATTAGAAGACTTCGATCTACAT-GAA--------------------------CCCTTCCACATGAACAATTTGGATTATCTA--ATAA-GTTGCAACAATGTAAATCTGATTTAACAATACAATTGTGTTTTACCCTAATGTG------ATTTAATTTTAAAAATCTTTT--TCCCACATGAGAAATAT-------------------------TG---TTTT-GCATATATTTCTTAAAAGTTTTAAAGG-ATTTGCTAAATTCCCTTTAAGTGTG
gi|4 : ATAGGATTGCCATAC-ATTTTGAGTATTTTACAA-TAT-ATACAAGTT----AGT---GCA---A-------TACA---------------TCA-ATACAAAT-TGTG-TTTCAA-GGTGTAC--AAGTATATGTA-------A-CATATA--GAAT--ATAAGTAA--G--AT-AGTGCATTATTATTTGTCG-------TTAG---A----AAAA-----CGAC-CGCATTCACCAAGAAAAGAT-TGAATAAT--TTTTGAAGAAAAGTTGCTTACATTT------TGAAAAAGTCAT----C----ATTTGAACCAGA-A----GAT----TTCATTCCCT---C--------TAAGAGTA-CAAA-TGCACAT-CGAT-A---T-AAT---------------------------------AA---TGATA-T-------TAA-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--G---TTT---T-CA-----------------GACAA-AAA--------------------------C------ttccata
gi|5 : ACAAAATTACCATAC-ATTTTGAGTATTCTAC--------TA---GTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AATGTAC--TA------GTA-------A-C--ATA--GAAT--AAAAGTAA--GATAT-AATACATTG--ATTT-TTA-------TTAAAAGA----AAAA-----CGAC-CACGTTCACTAAG-AAAGAT-TAAATAACTTTTT----GAAAAGTTTCTTACGTTT------TGT------CAT----G----A----------GAA----GAAAGATTTCA-TCCCC---CA-------TAACG--A-TAAA-TGCACAT-CAATGACTTTAAATATA------------ACATTTATAATGTATCGGAA---TGATA-GTACACTTT-A-ATTTGTTTGTTGGGTTAAGCAAATGTTCTAGCAGTAGAATATT--T---TTT---TACC-----------------CACAACAAA--------------------------G------A-ATAAACAAcaaatggtaagcacaggcgat
gi|6 : AAAGATTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTG-A-ATATTTCCAG---C---CTTCATTTTGGTAAT-------TC-------A-TAGAATTTCGAGTAGCA-TATCCAGAA---ATCGTGCTTCTAATAGTTGGTGTAATATTC---TGTAGATAA--A--AGAGGTACTAAATTAT---T---------GTGTAT-C---TTG-TACAA---AGTGACATGCTTAGCTCTATTTCTTCTAACTTCTAAAGGGTTCCAGCCTGTTTCTAAAAATAATGAATT-------------------AGTTACGATTCTGGCTGCATGTAATTGAAC---TTTCTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCA
gi|7 : AATTGCCATAC-GTTTTGGAT---TTACA--CTT-ATACAAGTT----AGT---GCA---A-------TCAA---------------TCA-ATACAAAT--GTGTTT-CAGCAGTGTAC--AA------GTACATGTTAA-CATATA--GAATATAA--GTAA--G--ATCAGTGCATT-TTATTTGTCT-------TTAGA--A----AAA------CGACGCAGAT-CACCAAGAAA-GATGTGAATAAA--TTT----TGAAAGTT---TACATTT------TGAA-----CAT----C----A----------G-A----AAGAGAATTCATTCCCC---TC-------TAAGA--GGTAAAATGCACAT--GAT-A---TAAATA---------------------------------A---TGATATA-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGT-TATTTGT---TTT---TACA-----------------GAC-A-AAA--------------------------C------ACA-GAA
gi|8 : ataggGCCATAC-ATTTTGAGTATTTTAC---CAT-TTACACATT----AATTATGCA---A-------TACACATGTAAA-------TTA-ATTCCAGT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CTTATA--GA-TAAAA--GTAA--G--AT-AGTGCATTA---CTTGTTT-------TTAGA--A----AAA------CGAC-CACATTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CAACATTT------TGAA-----CAT----C----A----------G-AAAGAGA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATAA---TAAATATA------------TCGTT------------GAA---TGAAC-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAG
gi|9 : AAAATTGC-A-AC-ATTTTTAGTATTTTACAA-CAT-TTACAAATT----AAT---GCA---A-------TACACATGTACATAAATGATTT-ATAC-AAT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAA---------------------TTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACGTTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CGACATTT------TGAG-----CTT----TAGAAA----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-T
Alignments
lowQualScore : 1111111111111111111
lowQualScore : 1111 333333333333333333333333333333 222222 1111111 1111111 4444444444444444444444444444444444 1111111 1 6666666666666666666666666666666 222222222 11111 111111 111 444444444444444444 777777777777777777777777777777777 2222222 44444444444 11 11111 111 1111 6666666666666666666 111 111 2222222222222 4444444444444 22222 1 1111 0000000000000000000 222
lowQualScore : 6 333 3 4 0000 555 111111111111111111111111111111 2 2 7 2 33 888888 9999999 2 44 222222 99999 3 0 44 3333333 555 7777 99999 3 3 55 7777 99 4 999999 0000000 9999999999999999999999999999999999 666 9999999 1 55 3 4 4 7 2 888 2222222222222222222222222222222 888 0 111111111 5 5 22222 5 5 00 1 222222 000 1 111111111111111111 5 222222222222222222222222222222222 0 7 8888888 0 1 88 11111111111 1 33 33 1 4 77 22 33333 000 5 0 4 0 5 0 9999 777 0 5 33 0 1 0000 999 3 888 888 1 2 1111111111111111111 2 5 0 000 33 77 8 444 3333333333333 8888888888888 11111 0 8888 1 1 3 0 4 0 0 1 1 4 1 7 3333333333333333333 1 333 7
lowQualScore : . ... . . .... ... .............................. . . . . .. ...... ....... . .. ...... ..... . . .. ....... ... .... ..... . . .. .... .. . ...... ....... .................................. ... ....... . .. . . . . . ... ............................... ... . ......... . . ..... . . .. . ...... ... . .................. . ................................. . . ....... . . .. ........... . .. .. . . .. .. ..... ... . . . . . . .... ... . . .. . . .... ... . ... ... . . ................... . . . ... .. .. . ... ............. ............. ..... . .... . . . . . . . . . . . . ................... . ... .
lowQualScore : 2 999 1 0 8888 444 222222222222222222222222222222 9 9 9 9 99 222222 3333333 9 22 444444 22222 1 4 66 0000000 888 7777 11111 3 6 00 7777 22 8 666666 1111111 3333333333333333333333333333333333 444 5555555 4 00 6 0 4 4 8 888 1111111111111111111111111111111 888 2 555555555 0 0 55555 0 0 77 4 333333 000 7 777777777777777777 7 666666666666666666666666666666666 8 3 7777777 7 0 33 77777777777 2 88 00 7 3 99 00 66666 000 7 3 0 3 9 1 4444 888 9 0 88 1 3 6666 000 5 888 888 0 0 0000000000000000000 3 7 1 000 77 44 8 000 5555555555555 5555555555555 55555 0 5555 2 2 2 2 5 2 8 2 0 2 0 3 3333333333333333333 0 333 3
consensus : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
Reference ( family-893 ) : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
gi|1 : TTTATAAAATTGACATAC-ATTTTGAGTATTTAACAA-CAG-ATACAAGTT----AAT---GCA---A-------TATA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGCGTAC--AA------GTA-------A-CATATA--GAAGAAAAAAATAA--G--AT-AGTACATTATCACCCCCTCACCACCACCAAA--A----AAAAACCCTCGAC-CACATTAACTAAGAAAAGAT-TGAATAAC--TTT----AAAAATTT--CCACACTT------TGTA-----CAT----C----A----------G-A----GA-----TTCATTTCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATGA---TAAATATT------------TCGTT------------AAA---TGATA-A-------T-A-ATTTGTTT-----ATTAAAC-AATG-TGTAACAGTAGTATATT--T---GTT----ACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTGTCTACTATAAAGTTACAAAAAAATAAGTCAGAGTTTAAAATACCATTATGTATTAACTTTGTGTG-----CATT--ATATTAAAAAATATTA--TCCCAAATGAAAAATATCTTGGAGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTTTAAAAAGGTTTAATGGAAGTTGC----TTCCCTT---GTCTGAATACT-ATGATTATTCCAATGTTTGGCAGTGTCAGAAATAAAGGCTTT----ATTA-A-ATAATTCCAA---C---CTGCATTTTGGTAATGAATAATTC-------ATT-AAATTTCGAG--ACATTACCCAGAA---ATTGTGCTTCTAATATTTTGTGC-ATATTT---TGTAGATAAAGA--GGA---ACTAAATTAC---T---------ATGTAT-C---TTG-TACAT---AGTTACAGGATTAGCTCTATATTTCCTAACTTTTAAAGGGTCCCAGGCTGTTTCTAAACATAATGAATTTGAAGCAATATTTAAGACAAATTAAGATTCTAGCTGCATATAGTTGAACCTTTTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACACAGACCATACTTGAACAGCGTATTCAA
gi|10 : AAATTATGACAGTATCAGAAATA-------T----ATTA-------TTCCAA---C---CTGCGTTTTGGTAATGAA-AA--------------GAATTTCGATTGGAA-TATCCAGCAGCCATA-TGCTTCTAATATCGGGTACAATATTA---TGTCGAT--ACATGGGA---ACCAAATTAT---TGTATGTTTCATATATAC---ATG-TATAT---TGTTACAAGTT---------------TAACTTCCGAAAGTTCCTGGCTTGTTTCT
gi|11 : tgagtcctatagttctaGCCATAC-ATTTCGAGTATTTTACAA-TAT-ATA-------------------------------------------------TTA-ATACCAAT-TGTGCTTTCAG-AGTGTAC--AA------ATA-------A-CATATA--GAATAAAA--GTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AA-A-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACATTT------TGAA-----CCT----CAGAAA----------G-A----GA-----TTCATTTCCC---CA-------CAA-A--A-TAAA-TGCAC
gi|12 : AAATATCTATTCCTGAATGAAAAATATCTTGGTCGTTT--TTCAATATATAGTG---CTTT-GCAAACATTTTTTGAAAA---------------C----TCCCCTT---GTATGGATACTTAAGATTATTCCAATTTTTGACAATGTCAGGAATAGAGGATTA----ATTA-A-ACAATTCTAG---C---CTATATTTTGGTAATGAATAATTC-------A-T-
gi|13 : cAGTTGC----ATCCCTT---GTATAAACATT-AAG-----------TTCTGACGATATCAAAAATAAAAGCTTTCTTGATTACG-GTAATTCCAA---C---CTCCA-GTTGGGGATGAATAATTTGAACTTGA-A-GAATTTTGAGCGGAA-TGTTCAGAA---AATGTGCATCTCATATCAAGTGCTATATTT---T
gi|14 : ATACAATTGCC-TAC-ATTTTGAGTATTTTACAA-CAT-TTACAAATT----GAT---GCA---AACACATGTACA---------------TTA-ATACCAAT-TGTGTTTT-AT-GGTGTAC--AA------GTA-------A-CATATATAGAATAAAA--GTAA--G--AT-GGTGCATTA---CTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACC
gi|15 : TATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAATATTTTTTAAAAGATTTAATGTAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATATCTGGTAGTGTCAGGAATAAAGGATTT----ATCA-A-ATACTTCCAA---CTAACTACACATT--TAGTGAA
gi|16 : AAAGTT--CTACGTTT------TGTA-----CAT----G----A----------G-A----AAGATA-TTCATTCCCC---CA-------TAACG--A-TAAA-TGCACGT-CAATGA---TAAATATACATTATAATGTATCGTT------------GAA---TGATA-G-------T-A-ATTTGTTT-----TTTAAGC-AATG-TCTAGCAGTAGAATA-T--T---TTT---TACC-----------------CACAA-AAA--------------------------
gi|17 : TTTATAAAATTGCCATACTCTTTTGAATATTTTACAA-CATTAAAAAAGATGC--AAT---ACACATG-------TACA---------------TTA-ATACCAAT-TGTGTTTT-AG-AGTGTATCAAA------GTA-------A-CATATA--GAACTTGAAAGTAAT-G--AT-Aaa
gi|18 : agtCTGCAAATAATTTAAC---TTGTTCTAACTTT-CTACGTCCGCGTCTGTGCACCCAGACCATACTTGAACAACATATTCAAcgtactgagagagaaatga
gi|19 : tattaATCTTGGTGGTCTGCTTCCCC------TG---CTTT-TCAAACATTT-TTAAAAGATTTAATGGAAGCTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTACTattgaaataagatattccttgacacatttatttaataatttttttagtaatcaaagttgttgtttt
gi|19 : T----ACTA-AGATTATTCCAATTAC---TTCCAGCTTGGTATTGA---------------------TTTCGAGTAGCA-TATCCAGAA---ATAGTGCTTCTtccagcttggtattgatttcgagtagcatatccagaaatagtgcttct
gi|2 : atcttggtggtctgcttcccctgcttttcaaacatttttaaaagatttaatggaagctgcttcccttgtgtggaAAGATTAGAT-TGGATAAC--TTT----AAACAGTT--CTACATATATATCACATA-----CATG---T----A----------G-G----AA-----T--AATCTCC---AA-------TGGAA--A-CA---TGC-TGTTCTGTAA---TGTACAAG------------TCATT------------GAA---TG------------C-A-ACT--------------AAC-AATG--CTTGCTGTTATGTAGT--T---TTT---TTTA-----------------TATAA-AAATAGATGGTATCGGTCTTCTTCCCTTCC------ACATAAACATCT--GAATATTTATT-----GTTATAACGATGTAAATCAAATATCAAGGTACAGTTATG-CTTAACCTTGTGTAAGCTACATGT-ATATTCAAAAACATAT--TCCCATCTGAAAAATATTTTGGTG--TT--TT--ACA----GTGTTACTTT-GCACACATTTCTTCAACTTTTTAATTGAAGTTGC----TTCCTTT---GGTTTAACACT-GAGTATGTTCCACATTCTTACAG-ATCAGGAATAAGAGATTT----GTTG-A-ATATTTCTAA---C---CTGTATTTTGACAGTGAAT-----------------AATTTCGAGCAACA-T---------------TGCTTCCTATATCATGTACCATATTTGGATGTACAT--ATG--CAT---ACTAGTATATCCCT---------ATATAC-TGAATTGCTATATGTATGTTGCGAATCTAGTTCTATCTCTTCTAACTCCAAAAGGTTCCCTAATTAATTATAAGAAT-ATGAATT-------------------
gi|20 : aagtTTT-TAAAATTGCCATACCATTTTGAATATTTTACAA-CAA-A-AAAAGATCGACAAT---ACACATG-------TACA---------------TTA-ATACCAATGTGTGTTTT-AG-AGTGTAA--AA------GTA-------A-CATATA--GAAT----AAGTAA-----AT-AGT
gi|21 : TATAGAATTGTCATAC-ATTATGAGTAATTTAACA-CAG-GTACAGATG----TAT---ACA---A-------TACT---------------TGA-ATATTATT-TGTGTTTACAG-AGTGTAC--AC------GAA-------G-CGTA
gi|22 : ATAAAATTGCTATAC-ATTTTGAGTATTTCACAT-CAT-ATATAAATT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGCTTTCCG-AGTGTAC--AA------GTA-------G-CATATA--GAATA---------------------CATTATTACTTGTgcattatcaaattatagtaaaaa
gi|23 : --A----AAAA-----CGTC-CACATTAGTGAAGAAAAGAT-TGAA--------------------T--CTATGTTT------TATG-----CATTAGGC----A----------G-G----GA-----ATCACCCCCC---CCCCCT---TAACA--A-CAGA-TGCAAGT-C
gi|24 : attttgtatTTTATAGAA--GGCATAC-ATTTTGTGCATTTTACAACCAT-ATATAAGTT----AA---------------------A---------------TTAGATA-CAA--TGCGTGTCCAG-AG-GCAA--TA------TTA-------AGCATATA--GAATAAtcaaaaaataa
gi|25 : tatgcacagtaaAAATATTTTGGTGTTTT--AACAACA----ATA---ATTTAGCAGACATTTCTTTAAAATTTTAATAGAAGTGGC----TTCCCTC---GTATAAACACC-ATAA-CATTCTAATTTCTG
gi|26 : tgct-ATACCAAT-TATGTTTTCAG-AGTGTAC--AA------GTA-------A-CAAATA--GAAT--AAAAGTAA--G--AC-AGTACATTATTACTTGTTT-------TTAG---A----AAAA-----CGAC-CATATTCACCAAGAAAAg
gi|27 : AAAAGTAAATG--AT-ACTAAAT-ATC-----CTT-------TTAGA--ATAGAAAAA-----CGAC-CAAACTCTTTTAGAGAAGAT-TGACTAAC--CTT----GAAAAGTT--CTGAATTT------TATA-----CAC----C----A----------A-A----AA-----taa
gi|28 : tAGTAGCA-TATCCAGAA---ATAGTGCTTCTAA
gi|3 : -CACATTCATTACGAAAAGAT-TGAACAAC--TTC----AAA--------TAC-------------------CAT----C------------------------------CCATCCCCCACCCACCCCCTTTAGCA--A-CAGA-TGCAAGT-C--T-A---TAAATGTACAAG--------TTATT------------GAAATCTAGGA-G-------T-ATATTTGTTC-----ATTAAAA-CATA-TCTTGCCACTGCATATT--TTTTTTTACATACAATTAGAAGACTTCGATCTACAT-GAA--------------------------CCCTTCCACATGAACAATTTGGATTATCTA--ATAA-GTTGCAACAATGTAAATCTGATTTAACAATACAATTGTGTTTTACCCTAATGTG------ATTTAATTTTAAAAATCTTTT--TCCCACATGAGAAATAT-------------------------TG---TTTT-GCATATATTTCTTAAAAGTTTTAAAGG-ATTTGCTAAATTCCCTTTAAGTGTG
gi|4 : ATAGGATTGCCATAC-ATTTTGAGTATTTTACAA-TAT-ATACAAGTT----AGT---GCA---A-------TACA---------------TCA-ATACAAAT-TGTG-TTTCAA-GGTGTAC--AAGTATATGTA-------A-CATATA--GAAT--ATAAGTAA--G--AT-AGTGCATTATTATTTGTCG-------TTAG---A----AAAA-----CGAC-CGCATTCACCAAGAAAAGAT-TGAATAAT--TTTTGAAGAAAAGTTGCTTACATTT------TGAAAAAGTCAT----C----ATTTGAACCAGA-A----GAT----TTCATTCCCT---C--------TAAGAGTA-CAAA-TGCACAT-CGAT-A---T-AAT---------------------------------AA---TGATA-T-------TAA-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--G---TTT---T-CA-----------------GACAA-AAA--------------------------C------ttccata
gi|5 : ACAAAATTACCATAC-ATTTTGAGTATTCTAC--------TA---GTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AATGTAC--TA------GTA-------A-C--ATA--GAAT--AAAAGTAA--GATAT-AATACATTG--ATTT-TTA-------TTAAAAGA----AAAA-----CGAC-CACGTTCACTAAG-AAAGAT-TAAATAACTTTTT----GAAAAGTTTCTTACGTTT------TGT------CAT----G----A----------GAA----GAAAGATTTCA-TCCCC---CA-------TAACG--A-TAAA-TGCACAT-CAATGACTTTAAATATA------------ACATTTATAATGTATCGGAA---TGATA-GTACACTTT-A-ATTTGTTTGTTGGGTTAAGCAAATGTTCTAGCAGTAGAATATT--T---TTT---TACC-----------------CACAACAAA--------------------------G------A-ATAAACAAcaaatggtaagcacaggcgat
gi|6 : AAAGATTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTG-A-ATATTTCCAG---C---CTTCATTTTGGTAAT-------TC-------A-TAGAATTTCGAGTAGCA-TATCCAGAA---ATCGTGCTTCTAATAGTTGGTGTAATATTC---TGTAGAT--AAA--AGAGGTACTAAATTAT---T---------GTGTAT-C---TTG-TACAA---AGTGACATGCTTAGCTCTATTTCTTCTAACTTCTAAAGGGTTCCAGCCTGTTTCTAAAAATAATGAATT-------------------AGTTACGATTCTGGCTGCATGTAATTGAAC---TTTCTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCA
gi|7 : AATTGCCATAC-GTTTTGGAT---TTACA--CTT-ATACAAGTT----AGT---GCA---A-------TCAA---------------TCA-ATACAAAT--GTGTTT-CAGCAGTGTAC--AA------GTACATGTTAA-CATATA--GAATATAA--GTAA--G--ATCAGTGCATT-TTATTTGTCT-------TTAGA--A----AAA------CGACGCAGAT-CACCAAGAAA-GATGTGAATAAA--TTT----TGAAAGTT---TACATTT------TGAA-----CAT----C----A----------G-A----AAGAGAATTCATTCCCC---TC-------TAAGA--GGTAAAATGCACAT--GAT-A---TAAATA---------------------------------A---TGATATA-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGT-TATTTGT---TTT---TACA-----------------GAC-A-AAA--------------------------C------ACA-GAA
gi|8 : ataggGCCATAC-ATTTTGAGTATTTTAC---CAT-TTACACATT----AATTATGCA---A-------TACACATGTAAA-------TTA-ATTCCAGT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CTTATA--GA-TAAAA--GTAA--G--AT-AGTGCATTA---CTTGTTT-------TTAGA--A----AAA------CGAC-CACATTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CAACATTT------TGAA-----CAT----C----A----------G-AAAGAGA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATAA---TAAATATA------------TCGTT------------GAA---TGAAC-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAG
gi|9 : AAAATTGC-A-AC-ATTTTTAGTATTTTACAA-CAT-TTACAAATT----AAT---GCA---A-------TACACATGTACATAAATGATTT-ATAC-AAT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAA---------------------TTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACGTTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CGACATTT------TGAG-----CTT----TAGAAA----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-T
Alignments
lowQualScore : 1111111111111111111
lowQualScore : 1111 333333333333333333333333333333 222222 1111111 1111111 4444444444444444444444444444444444 1111111 1 6666666666666666666666666666666 222222222 11111 111111 111 444444444444444444 777777777777777777777777777777777 2222222 44444444444 11 11111 111 1111 6666666666666666666 111 111 2222222222222 4444444444444 22222 1 1111 0000000000000000000 222
lowQualScore : 6 333 3 4 0000 555 111111111111111111111111111111 2 2 7 2 33 888888 9999999 2 44 222222 99999 3 0 44 3333333 555 7777 99999 3 3 55 7777 99 4 999999 0000000 9999999999999999999999999999999999 666 9999999 1 55 3 4 4 7 2 888 2222222222222222222222222222222 888 0 111111111 5 5 22222 5 5 00 1 222222 000 1 111111111111111111 5 222222222222222222222222222222222 0 7 8888888 0 1 88 11111111111 1 33 33 1 4 77 22 33333 000 5 0 4 0 5 0 9999 777 0 5 33 0 1 0000 999 3 888 888 1 2 1111111111111111111 2 5 0 000 33 77 8 444 3333333333333 8888888888888 11111 0 8888 1 1 3 0 4 0 0 1 1 4 1 7 3333333333333333333 1 333 7
lowQualScore : . ... . . .... ... .............................. . . . . .. ...... ....... . .. ...... ..... . . .. ....... ... .... ..... . . .. .... .. . ...... ....... .................................. ... ....... . .. . . . . . ... ............................... ... . ......... . . ..... . . .. . ...... ... . .................. . ................................. . . ....... . . .. ........... . .. .. . . .. .. ..... ... . . . . . . .... ... . . .. . . .... ... . ... ... . . ................... . . . ... .. .. . ... ............. ............. ..... . .... . . . . . . . . . . . . ................... . ... .
lowQualScore : 2 999 1 0 8888 444 222222222222222222222222222222 9 9 9 9 99 222222 3333333 9 22 444444 22222 1 4 66 0000000 888 7777 11111 3 6 00 7777 22 8 666666 1111111 3333333333333333333333333333333333 444 5555555 4 00 6 0 4 4 8 888 1111111111111111111111111111111 888 2 555555555 0 0 55555 0 0 77 4 333333 000 7 777777777777777777 7 666666666666666666666666666666666 8 3 7777777 7 0 33 77777777777 2 88 00 7 3 99 00 66666 000 7 3 0 3 9 1 4444 888 9 0 88 1 3 6666 000 5 888 888 0 0 0000000000000000000 3 7 1 000 77 44 8 000 5555555555555 5555555555555 55555 0 5555 2 2 2 2 5 2 8 2 0 2 0 3 3333333333333333333 0 333 3
consensus : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
Reference ( family-893 ) : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
gi|1 : TTTATAAAATTGACATAC-ATTTTGAGTATTTAACAA-CAG-ATACAAGTT----AAT---GCA---A-------TATA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGCGTAC--AA------GTA-------A-CATATA--GAAGAAAAAAATAA--G--AT-AGTACATTATCACCCCCTCACCACCACCAAA--A----AAAAACCCTCGAC-CACATTAACTAAGAAAAGAT-TGAATAAC--TTT----AAAAATTT--CCACACTT------TGTA-----CAT----C----A----------G-A----GA-----TTCATTTCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATGA---TAAATATT------------TCGTT------------AAA---TGATA-A-------T-A-ATTTGTTT-----ATTAAAC-AATG-TGTAACAGTAGTATATT--T---GTT----ACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTGTCTACTATAAAGTTACAAAAAAATAAGTCAGAGTTTAAAATACCATTATGTATTAACTTTGTGTG-----CATT--ATATTAAAAAATATTA--TCCCAAATGAAAAATATCTTGGAGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTTTAAAAAGGTTTAATGGAAGTTGC----TTCCCTT---GTCTGAATACT-ATGATTATTCCAATGTTTGGCAGTGTCAGAAATAAAGGCTTT----ATTA-A-ATAATTCCAA---C---CTGCATTTTGGTAATGAATAATTC-------ATT-AAATTTCGAG--ACATTACCCAGAA---ATTGTGCTTCTAATATTTTGTGC-ATATTT---TGTAGATAAAGA--GGA---ACTAAATTAC---T---------ATGTAT-C---TTG-TACAT---AGTTACAGGATTAGCTCTATATTTCCTAACTTTTAAAGGGTCCCAGGCTGTTTCTAAACATAATGAATTTGAAGCAATATTTAAGACAAATTAAGATTCTAGCTGCATATAGTTGAACCTTTTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACACAGACCATACTTGAACAGCGTATTCAA
gi|10 : AAATTATGACAGTATCAGAAATA-------T----ATTA-------TTCCAA---C---CTGCGTTTTGGTAATGAA-AA--------------GAATTTCGATTGGAA-TATCCAGCAGCCATA-TGCTTCTAATATCGGGTACAATATTA---TGTCGAT--ACATGGGA---ACCAAATTAT---TGTATGTTTCATATATAC---ATG-TATAT---TGTTACAAGTT---------------TAACTTCCGAAAGTTCCTGGCTTGTTTCT
gi|11 : tgagtcctatagttctaGCCATAC-ATTTCGAGTATTTTACAA-TAT-ATA-------------------------------------------------TTA-ATACCAAT-TGTGCTTTCAG-AGTGTAC--AA------ATA-------A-CATATA--GAATAAAA--GTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AA-A-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACATTT------TGAA-----CCT----CAGAAA----------G-A----GA-----TTCATTTCCC---CA-------CAA-A--A-TAAA-TGCAC
gi|12 : AAATATCTATTCCTGAATGAAAAATATCTTGGTCGTTT--TTCAATATATAGTG---CTTT-GCAAACATTTTTTGAAAA---------------C----TCCCCTT---GTATGGATACTTAAGATTATTCCAATTTTTGACAATGTCAGGAATAGAGGATTA----ATTA-A-ACAATTCTAG---C---CTATATTTTGGTAATGAATAATTC-------A-T-
gi|13 : cAGTTGC----ATCCCTT---GTATAAACATT-AAG-----------TTCTGACGATATCAAAAATAAAAGCTTTCTTGATTACG-GTAATTCCAA---C---CTCCA-GTTGGGGATGAATAATTTGAACTTGA-A-GAATTTTGAGCGGAA-TGTTCAGAA---AATGTGCATCTCATATCAAGTGCTATATTT---T
gi|14 : ATACAATTGCC-TAC-ATTTTGAGTATTTTACAA-CAT-TTACAAATT----GAT---GCA---AACACATGTACA---------------TTA-ATACCAAT-TGTGTTTT-AT-GGTGTAC--AA------GTA-------A-CATATATAGAATAAAA--GTAA--G--AT-GGTGCATTA---CTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACC
gi|15 : TATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAATATTTTTTAAAAGATTTAATGTAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATATCTGGTAGTGTCAGGAATAAAGGATTT----ATCA-A-ATACTTCCAA---CTAACTACACATT--TAGTGAA
gi|16 : AAAGTT--CTACGTTT------TGTA-----CAT----G----A----------G-A----AAGATA-TTCATTCCCC---CA-------TAACG--A-TAAA-TGCACGT-CAATGA---TAAATATACATTATAATGTATCGTT------------GAA---TGATA-G-------T-A-ATTTGTTT-----TTTAAGC-AATG-TCTAGCAGTAGAATA-T--T---TTT---TACC-----------------CACAA-AAA--------------------------
gi|17 : TTTATAAAATTGCCATACTCTTTTGAATATTTTACAA-CATTAAAAAAGATGC--AAT---ACACATG-------TACA---------------TTA-ATACCAAT-TGTGTTTT-AG-AGTGTATCAAA------GTA-------A-CATATA--GAACTTGAAAGTAAT-G--AT-Aaa
gi|18 : agtCTGCAAATAATTTAAC---TTGTTCTAACTTT-CTACGTCCGCGTCTGTGCACCCAGACCATACTTGAACAACATATTCAAcgtactgagagagaaatga
gi|19 : tattaATCTTGGTGGTCTGCTTCCCC------TG---CTTT-TCAAACATTT-TTAAAAGATTTAATGGAAGCTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTACTattgaaataagatattccttgacacatttatttaataatttttttagtaatcaaagttgttgtttt
gi|19 : T----ACTA-AGATTATTCCAATTAC---TTCCAGCTTGGTATTGA---------------------TTTCGAGTAGCA-TATCCAGAA---ATAGTGCTTCTtccagcttggtattgatttcgagtagcatatccagaaatagtgcttct
gi|2 : atcttggtggtctgcttcccctgcttttcaaacatttttaaaagatttaatggaagctgcttcccttgtgtggaAAGATTAGAT-TGGATAAC--TTT----AAACAGTT--CTACATATATATCACATA-----CATG---T----A----------G-G----AA-----T--AATCTCC---AA-------TGGAA--A-CA---TGC-TGTTCTGTAA---TGTACAAG------------TCATT------------GAA---TG------------C-A-ACT--------------AAC-AATG--CTTGCTGTTATGTAGT--T---TTT---TTTA-----------------TATAA-AAATAGATGGTATCGGTCTTCTTCCCTTCC------ACATAAACATCT--GAATATTTATT-----GTTATAACGATGTAAATCAAATATCAAGGTACAGTTATG-CTTAACCTTGTGTAAGCTACATGT-ATATTCAAAAACATAT--TCCCATCTGAAAAATATTTTGGTG--TT--TT--ACA----GTGTTACTTT-GCACACATTTCTTCAACTTTTTAATTGAAGTTGC----TTCCTTT---GGTTTAACACT-GAGTATGTTCCACATTCTTACAG-ATCAGGAATAAGAGATTT----GTTG-A-ATATTTCTAA---C---CTGTATTTTGACAGTGAAT-----------------AATTTCGAGCAACA-T---------------TGCTTCCTATATCATGTACCATATTTGGATGTACAT--ATG--CAT---ACTAGTATATCCCT---------ATATAC-TGAATTGCTATATGTATGTTGCGAATCTAGTTCTATCTCTTCTAACTCCAAAAGGTTCCCTAATTAATTATAAGAAT-ATGAATT-------------------
gi|20 : aagtTTT-TAAAATTGCCATACCATTTTGAATATTTTACAA-CAA-A-AAAAGATCGACAAT---ACACATG-------TACA---------------TTA-ATACCAATGTGTGTTTT-AG-AGTGTAA--AA------GTA-------A-CATATA--GAAT----AAGTAA-----AT-AGT
gi|21 : TATAGAATTGTCATAC-ATTATGAGTAATTTAACA-CAG-GTACAGATG----TAT---ACA---A-------TACT---------------TGA-ATATTATT-TGTGTTTACAG-AGTGTAC--AC------GAA-------G-CGTA
gi|22 : ATAAAATTGCTATAC-ATTTTGAGTATTTCACAT-CAT-ATATAAATT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGCTTTCCG-AGTGTAC--AA------GTA-------G-CATATA--GAATA---------------------CATTATTACTTGTgcattatcaaattatagtaaaaa
gi|23 : --A----AAAA-----CGTC-CACATTAGTGAAGAAAAGAT-TGAA--------------------T--CTATGTTT------TATG-----CATTAGGC----A----------G-G----GA-----ATCACCCCCC---CCCCCT---TAACA--A-CAGA-TGCAAGT-C
gi|24 : attttgtatTTTATAGAA--GGCATAC-ATTTTGTGCATTTTACAACCAT-ATATAAGTT----AA---------------------A---------------TTAGATA-CAA--TGCGTGTCCAG-AG-GCAA--TA------TTA-------AGCATATA--GAATAAtcaaaaaataa
gi|25 : tatgcacagtaaAAATATTTTGGTGTTTT--AACAACA----ATA---ATTTAGCAGACATTTCTTTAAAATTTTAATAGAAGTGGC----TTCCCTC---GTATAAACACC-ATAA-CATTCTAATTTCTG
gi|26 : tgct-ATACCAAT-TATGTTTTCAG-AGTGTAC--AA------GTA-------A-CAAATA--GAAT--AAAAGTAA--G--AC-AGTACATTATTACTTGTTT-------TTAG---A----AAAA-----CGAC-CATATTCACCAAGAAAAg
gi|27 : AAAAGTAAATG--AT-ACTAAAT-ATC-----CTT-------TTAGA--ATAGAAAAA-----CGAC-CAAACTCTTTTAGAGAAGAT-TGACTAAC--CTT----GAAAAGTT--CTGAATTT------TATA-----CAC----C----A----------A-A----AA-----taa
gi|28 : tAGTAGCA-TATCCAGAA---ATAGTGCTTCTAA
gi|3 : -CACATTCATTACGAAAAGAT-TGAACAAC--TTC----AAA--------TAC-------------------CAT----C------------------------------CCATCCCCCACCCACCCCCTTTAGCA--A-CAGA-TGCAAGT-C--T-A---TAAATGTACAAG--------TTATT------------GAAATCTAGGA-G-------T-ATATTTGTTC-----ATTAAAA-CATA-TCTTGCCACTGCATATT--TTTTTTTACATACAATTAGAAGACTTCGATCTACAT-GAA--------------------------CCCTTCCACATGAACAATTTGGATTATCTA--ATAA-GTTGCAACAATGTAAATCTGATTTAACAATACAATTGTGTTTTACCCTAATGTG------ATTTAATTTTAAAAATCTTTT--TCCCACATGAGAAATAT-------------------------TG---TTTT-GCATATATTTCTTAAAAGTTTTAAAGG-ATTTGCTAAATTCCCTTTAAGTGTG
gi|4 : ATAGGATTGCCATAC-ATTTTGAGTATTTTACAA-TAT-ATACAAGTT----AGT---GCA---A-------TACA---------------TCA-ATACAAAT-TGTG-TTTCAA-GGTGTAC--AAGTATATGTA-------A-CATATA--GAAT--ATAAGTAA--G--AT-AGTGCATTATTATTTGTCG-------TTAG---A----AAAA-----CGAC-CGCATTCACCAAGAAAAGAT-TGAATAAT--TTTTGAAGAAAAGTTGCTTACATTT------TGAAAAAGTCAT----C----ATTTGAACCAGA-A----GAT----TTCATTCCCT---C--------TAAGAGTA-CAAA-TGCACAT-CGAT-A---T-AAT---------------------------------AA---TGATA-T-------TAA-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--G---TTT---T-CA-----------------GACAA-AAA--------------------------C------ttccata
gi|5 : ACAAAATTACCATAC-ATTTTGAGTATTCTAC--------TA---GTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AATGTAC--TA------GTA-------A-C--ATA--GAAT--AAAAGTAA--GATAT-AATACATTG--ATTT-TTA-------TTAAAAGA----AAAA-----CGAC-CACGTTCACTAAG-AAAGAT-TAAATAACTTTTT----GAAAAGTTTCTTACGTTT------TGT------CAT----G----A----------GAA----GAAAGATTTCA-TCCCC---CA-------TAACG--A-TAAA-TGCACAT-CAATGACTTTAAATATA------------ACATTTATAATGTATCGGAA---TGATA-GTACACTTT-A-ATTTGTTTGTTGGGTTAAGCAAATGTTCTAGCAGTAGAATATT--T---TTT---TACC-----------------CACAACAAA--------------------------G------A-ATAAACAAcaaatggtaagcacaggcgat
gi|6 : AAAGATTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTG-A-ATATTTCCAG---C---CTTCATTTTGGTAAT-------TC-------A-TAGAATTTCGAGTAGCA-TATCCAGAA---ATCGTGCTTCTAATAGTTGGTGTAATATTC---TGTAGAT--AAA--AGAGGTACTAAATTAT---T---------GTGTAT-C---TTG-TACAA---AGTGACATGCTTAGCTCTATTTCTTCTAACTTCTAAAGGGTTCCAGCCTGTTTCTAAAAATAATGAATT-------------------AGTTACGATTCTGGCTGCATGTAATTGAAC---TTTCTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCA
gi|7 : AATTGCCATAC-GTTTTGGAT---TTACA--CTT-ATACAAGTT----AGT---GCA---A-------TCAA---------------TCA-ATACAAAT--GTGTTT-CAGCAGTGTAC--AA------GTACATGTTAA-CATATA--GAATATAA--GTAA--G--ATCAGTGCATT-TTATTTGTCT-------TTAGA--A----AAA------CGACGCAGAT-CACCAAGAAA-GATGTGAATAAA--TTT----TGAAAGTT---TACATTT------TGAA-----CAT----C----A----------G-A----AAGAGAATTCATTCCCC---TC-------TAAGA--GGTAAAATGCACAT--GAT-A---TAAATA---------------------------------A---TGATATA-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGT-TATTTGT---TTT---TACA-----------------GAC-A-AAA--------------------------C------ACA-GAA
gi|8 : ataggGCCATAC-ATTTTGAGTATTTTAC---CAT-TTACACATT----AATTATGCA---A-------TACACATGTAAA-------TTA-ATTCCAGT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CTTATA--GA-TAAAA--GTAA--G--AT-AGTGCATTA---CTTGTTT-------TTAGA--A----AAA------CGAC-CACATTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CAACATTT------TGAA-----CAT----C----A----------G-AAAGAGA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATAA---TAAATATA------------TCGTT------------GAA---TGAAC-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAG
gi|9 : AAAATTGC-A-AC-ATTTTTAGTATTTTACAA-CAT-TTACAAATT----AAT---GCA---A-------TACACATGTACATAAATGATTT-ATAC-AAT-TGTGTTTT-AG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAA---------------------TTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACGTTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CGACATTT------TGAG-----CTT----TAGAAA----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-T
blockSeqs : T AAC T C CGAC TAT ATACACATGTACATAAATGA G G C C CA GTATAT CATGTTA G TA TTGAAA ATG C TT . AAG TAGA . G G TT TGAA GC A ATATCA AAAAAGT CATTTGAACCAGAAGAT ACC CCCCCTT C GT G A T A G CTT TACATTATAATGTATCGTT ATC GTACACTT A T GTTGG A T G TTTT ACA A ATTAGAAGACTTCGATCT C TAGATGGTATCGGTCTTCTTCCCTTCC T ATAA C TT AGCTACATGT C AT GA C G GC CA ATATA TTA A T A TAAA TAA T AT A CTTG CG A TTA TAA G T ATAATTTGAACTTGAAG T . GCC TG GG A GGA AAAAGAGGT TGTATGTTTC TGAA C GTAT A T T C C T G C A . C . T
blockSeqs : C AA . A GC . ATACACATGTAAA . . C . . . . . . AAAA GAT . TT . A . . . . . . TC G . AA GAGAAGAAAGAT . CCCT A . . . . T A . TAACATTTATAATGTATCG . TA . . . . . T TGT . T C . CCCTTCC . TT A C ATTTA A . AT C G . CA A . . T A . . . AT C . AG A . . A T TCATAG C . . AG AA T . ACATGGGA CCCT AC . T A T T T A T T A . . . .
blockSeqs : . AA . A . . AACACATGTACA . . C . . . . . . AAAA TG . TT . A . . . . . . . A . TA CAGAAAGAGAA . . C . . . . G G . TACAAGTTATT . G . . . . . T T . A T . C T . AC C G . CC A . . C T . . . AT A . A C . . C C AAAG T . . AG AT C . ATGCAT T C . A T C . . T G A C
blockSeqs : . AA . C . . CATGTACA . . C . . . . . . AAAA G . TC . A . . . . . . . G . TA CAGAAAGAGA . . C . . . . A A . AGTCATT . G . . . . . T T . A G . G T T . CA A . . C T . . . TA A . A A . . A G AT C . . CG TG A .
blockSeqs : . AA . T . . CATGTACA . . C . . . . . . ATAA G . TT . A . . . . . . . A . TG GAGAAAGATA . . G . . . . G . . TATCGTT . T . . . . . T G . A C . C T . . . . . . C T . . . AT A . A T . . C T . T . . A
blockSeqs : . CA . T . . ATACT . . C . . . . . . AAAA G . TT . A . . . . . . . A . TA TAGGCAGGGA . . C . . . . A . . . . G . . . . . . T . . G . . . . . . . . . A . . . A . . A T . . G T T . . .
blockSeqs : . AT . C . . ATACA . . C . . . . . . ATAA G . TT . A . . . . . . . G . AA CAGAAAGAGA . . G . . . . . . . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . AA . C . . ATACA . . C . . . . . . AAAA G . . . . . . . . . . . A . AA TAGAAAGAGA . . C . . . . . .
blockSeqs : . AA . C . . ATACA . . . . . . . . . AAA G . . . . . . . . . . . A . AG GTAGGAA . . C . . .
blockSeqs : . A . C . . ATCAA . . . . . . . . . AA . . . . . . . . . . A . T CAAAAA . . . . .
blockSeqs : . . . . . . A . . . . . . . . . A . . . . . . . C
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : AAAA** ******* ***** CAGAAAGAGA************************ TATCATT************************ AAG****************
originalCons : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAAAAGTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CAT----C----A----------G-A----GA-----TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATA------------TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAATAATTC-------A-T-GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
finalCons : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--AA------GTA-------A-CATATA--GAATAAAA--GTAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT------TGNA-----CATCAGAAAGAGA------------------------TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATATATCATT------------------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGGTAATGAAAG----------------AATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
Alignments
lowQualScore : 1111111111111111111
lowQualScore : 1111 333333333333333333333333333333 111111 1111111 111 11111111 1 1111111 1 66666666666666666666666666666666666 222222222 11111 111111 111 444444444444444444 777777777777777777777777777777777 2222222 44444444444 11 11111 111 1111 111111 44444444444444 111 111 2222222222222 4444444444444 22222 1 1111 0000000000000000000 222
lowQualScore : 6 333 3 4 0000 555 111111111111111111111111111111 2 2 7 2 33 33 333333 9999999 2 2 33 33 33 99999 3 0 44 3333333 000 7777 99999 3 3 55 7777 99 4 3 33333333 3 555 999 3 0 666 9999999 1 55 3 4 4 7 2 888 22222222222222222222222222222222222 888 0 111111111 5 5 22222 5 5 00 1 222222 000 1 111111111111111111 5 222222222222222222222222222222222 0 7 8888888 0 1 88 11111111111 1 33 33 1 4 77 22 33333 000 5 0 4 0 5 0 9999 777 0 5 33 0 1 0000 999 3 888 888 1 444444 66 5 88888888888888 2 5 0 000 33 77 8 444 3333333333333 8888888888888 11111 0 8888 1 1 3 0 4 0 0 1 1 4 1 7 3333333333333333333 1 333 7
lowQualScore : . ... . . .... ... .............................. . . . . .. .. ...... ....... . . .. .. .. ..... . . .. ....... ... .... ..... . . .. .... .. . . ........ . ... ... . . ... ....... . .. . . . . . ... ................................... ... . ......... . . ..... . . .. . ...... ... . .................. . ................................. . . ....... . . .. ........... . .. .. . . .. .. ..... ... . . . . . . .... ... . . .. . . .... ... . ... ... . ...... .. . .............. . . . ... .. .. . ... ............. ............. ..... . .... . . . . . . . . . . . . ................... . ... .
lowQualScore : 2 999 1 0 8888 444 222222222222222222222222222222 9 9 9 9 99 99 222222 3333333 9 9 99 77 99 00000 1 4 66 0000000 777 7777 11111 3 6 00 7777 22 8 3 44444444 3 888 222 6 9 444 5555555 4 00 6 0 4 4 8 888 55555555555555555555555555555555555 888 2 555555555 0 0 55555 0 0 77 4 333333 000 7 777777777777777777 7 666666666666666666666666666666666 8 3 7777777 7 0 33 77777777777 2 88 00 7 3 99 00 66666 000 7 3 0 3 9 1 4444 888 9 0 88 1 3 6666 000 5 888 888 0 444444 99 0 33333333333333 3 7 1 000 77 44 8 000 5555555555555 5555555555555 55555 0 5555 2 2 2 2 5 2 8 2 0 2 0 3 3333333333333333333 0 333 3
consensus : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--A--A------GTA-------A-CA-TATA--GAA--TAAAAG--TAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT-TGN-A-----CAT-CA---GAA--AG-AGA-TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATA------------TA----TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGG------TAAT--G-AA-----A-------GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
Reference ( family-893 ) : TTTATAAAATTGCCATAC-ATTTTGAGTATTTTACAA-CAT-ATACAAGTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGTGTAC--A--A------GTA-------A-CA-TATA--GAA--TAAAAG--TAA--G--AT-AGTGCATTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACGTTT-TGN-A-----CAT-CA---GAA--AG-AGA-TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACGT-CGATGA---TAAATA------------TA----TCATT------------GAA---TGATA-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--T---TTT---TACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTATCTACTATAA-GTTACAACGATGTAAATCAGATTTNAAAATACAATTATGTNTTAACCTTGTGTG-----CATTT-ATATTAAAAAACATTT--TCCCGNATGAAAAATATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTCTTAAAAGNTTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTA-A-ATAATTCCAA---C---CTNCATTTTGG------TAAT--G-AA-----A-------GAATTTCGAGTAGCA-TATCCAGAA---ATNGTGCTTCTAATATCGNGTGCNATATTT---TGTAGAT--ANA--GGA---ACTAAATTAT---T---------ATGTAT-C---TTG-TACAT---NGTTACAAGTTTAGCTCTATNTCTTCTAACTTCTAAAGGNTCCCGGNCTGTTTCTAAAAATAATGAATT-------------------AGTTANGATTCTGGCTGCATATAATTGAAC---TTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCATACTTGAACAGCGTATTCAA
gi|1 : TTTATAAAATTGACATAC-ATTTTGAGTATTTAACAA-CAG-ATACAAGTT----AAT---GCA---A-------TATA---------------TTA-ATACCAAT-TGTGTTTTCAG-AGCGTAC--A--A------GTA-------A-CA-TATA--GAA--GAAAAAAATAA--G--AT-AGTACATTATCACCCCCTCACCACCACCAAA--A----AAAAACCCTCGAC-CACATTAACTAAGAAAAGAT-TGAATAAC--TTT----AAAAATTT--CCACACTT-TGT-A-----CAT-CA---GA-------GA-TTCATTTCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATGA---TAAATA------------TT----TCGTT------------AAA---TGATA-A-------T-A-ATTTGTTT-----ATTAAAC-AATG-TGTAACAGTAGTATATT--T---GTT----ACA-----------------CACAA-AAA--------------------------C------ACATGAACAACTTGGATTGTCTACTATAAAGTTACAAAAAAATAAGTCAGAGTTTAAAATACCATTATGTATTAACTTTGTGTG-----CATT--ATATTAAAAAATATTA--TCCCAAATGAAAAATATCTTGGAGGTTT--TTCAACA----GTG---CTTT-GCAAACATTTTTAAAAAGGTTTAATGGAAGTTGC----TTCCCTT---GTCTGAATACT-ATGATTATTCCAATGTTTGGCAGTGTCAGAAATAAAGGCTTT----ATTA-A-ATAATTCCAA---C---CTGCATTTTGG------TAAT--G-AAT----AATTCATTAAATTTCGAG--ACATTACCCAGAA---ATTGTGCTTCTAATATTTTGTGC-ATATTT---TGTAGATAAAGA--GGA---ACTAAATTAC---T---------ATGTAT-C---TTG-TACAT---AGTTACAGGATTAGCTCTATATTTCCTAACTTTTAAAGGGTCCCAGGCTGTTTCTAAACATAATGAATTTGAAGCAATATTTAAGACAAATTAAGATTCTAGCTGCATATAGTTGAACCTTTTTTTCTAATTTTTCTATTTCCGCTTTTGTGCACACAGACCATACTTGAACAGCGTATTCAA
gi|10 : AAATTATGACAGTATCAGAAATA-------T----ATTA-------TTCCAA---C---CTGCGTTTTGG------TAAT--GAAA-----A-------GAATTTCGATTGGAA-TATCCAGCAGCCATA-TGCTTCTAATATCGGGTACAATATTA---TGTCGAT--ACATGGGA---ACCAAATTAT---TGTATGTTTCATATATAC---ATG-TATAT---TGTTACAAGTT---------------TAACTTCCGAAAGTTCCTGGCTTGTTTCT
gi|11 : tgagtcctatagttctaGCCATAC-ATTTCGAGTATTTTACAA-TAT-ATA-------------------------------------------------TTA-ATACCAAT-TGTGCTTTCAG-AGTGTAC--A--A------ATA-------A-CA-TATA--GAA--TAAAAG--TAA--G--AT-AGTGCATTATTACTTGTTT-------TTAG---A----AAAA-----CGAC-CACATTCACCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CTACATTT-TGA-A-----CCT-CA---GAA--AG-AGA-TTCATTTCCC---CA-------CAA-A--A-TAAA-TGCAC
gi|12 : AAATATCTATTCCTGAATGAAAAATATCTTGGTCGTTT--TTCAATATATAGTG---CTTT-GCAAACATTTTTTGAAAA---------------C----TCCCCTT---GTATGGATACTTAAGATTATTCCAATTTTTGACAATGTCAGGAATAGAGGATTA----ATTA-A-ACAATTCTAG---C---CTATATTTTGG------TAAT--G-AA-----
gi|13 : cAGTTGC----ATCCCTT---GTATAAACATT-AAG-----------TTCTGACGATATCAAAAATAAAAGCTTTCTTGATTACG-GTAATTCCAA---C---CTCCAGTTGGGGATGAATAATTTG-AACTTGAA-------GAATTTTGAGCGGAA-TGTTCAGAA---AATGTGCATCTCATATCAAGTGCTATATTT---Ttaattcat
gi|14 : ATACAATTGCC-TAC-ATTTTGAGTATTTTACAA-CAT-TTACAAATT----GAT---GCA---AACACATGTACA---------------TTA-ATACCAAT-TGTGTTTT-AT-GGTGTAC--A--A------GTA-------A-CA-TATATAGAA--TAAAAG--TAA--G--AT-GGTGCATTA---CTTGTTT-------TTAGA--A----AAAA-----CGAC-CACATTCACC
gi|15 : TATCTTGGTGGTTT--TTCAACA----GTG---CTTT-GCAAATATTTTTTAAAAGATTTAATGTAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATATCTGGTAGTGTCAGGAATAAAGGATTT----ATCA-A-ATACTTCCAA---CTAACTACACATT--------TAGT--G-AA-----
gi|16 : AAAGTT--CTACGTTT-TGT-A-----CAT-GA---GAA--AG-ATA-TTCATTCCCC---CA-------TAACG--A-TAAA-TGCACGT-CAATGA---TAAATATACATTATAATGTA----TCGTT------------GAA---TGATA-G-------T-A-ATTTGTTT-----TTTAAGC-AATG-TCTAGCAGTAGAATA-T--T---TTT---TACC-----------------CACAA-AAA--------------------------
gi|17 : TTTATAAAATTGCCATACTCTTTTGAATATTTTACAA-CATTAAAAAAGATGC--AAT---ACACATG-------TACA---------------TTA-ATACCAAT-TGTGTTTT-AG-AGTGTATCAA--A------GTA-------A-CA-TATA--GAACTTGAAAG--TAAT-G--AT-Aaa
gi|18 : agtCTGCAAATAATTTAAC---TTGTTCTAACTTT-CTACGTCCGCGTCTGTGCACCCAGACCATACTTGAACAACATATTCAAcgtactgagagagaaatga
gi|19 : tattaATCTTGGTGGTCTGCTTCCCC------TG---CTTT-TCAAACATTT-TTAAAAGATTTAATGGAAGCTGC----TTCCCTT---GTGTGGATACT-AAGATTATTCCAATTACTattgaaataagatattccttgacacatttatttaataatttttttagtaatcaaagttgttgtttt
gi|19 : T----ACTA-AGATTATTCCAATTAC---TTCCAGCTTGG------TATT--G-A-----------------TTTCGAGTAGCA-TATCCAGAA---ATAGTGCTTCTtccagcttggtattgatttcgagtagcatatccagaaatagtgcttct
gi|2 : atcttggtggtctgcttcccctgcttttcaaacatttttaaaagatttaatggaagctgcttcccttgtgtggaAAGATTAGAT-TGGATAAC--TTT----AAACAGTT--CTACATATATATCA-----CATACA---TGT--AG-GAA-T--AATCTCC---AA-------TGGAA--A-CA---TGC-TGTTCTGTAA---TGTACA------------AG----TCATT------------GAA---TG------------C-A-ACT--------------AAC-AATG--CTTGCTGTTATGTAGT--T---TTT---TTTA-----------------TATAA-AAATAGATGGTATCGGTCTTCTTCCCTTCC------ACATAAACATCT--GAATATTTATT-----GTTATAACGATGTAAATCAAATATCAAGGTACAGTTATG-CTTAACCTTGTGTAAGCTACATGT-ATATTCAAAAACATAT--TCCCATCTGAAAAATATTTTGGTG--TT--TT--ACA----GTGTTACTTT-GCACACATTTCTTCAACTTTTTAATTGAAGTTGC----TTCCTTT---GGTTTAACACT-GAGTATGTTCCACATTCTTACAG-ATCAGGAATAAGAGATTT----GTTG-A-ATATTTCTAA---C---CTGTATTTTGA------CAGT--G-AA-------------TAATTTCGAGCAACA-T---------------TGCTTCCTATATCATGTACCATATTTGGATGTACAT--ATG--CAT---ACTAGTATATCCCT---------ATATAC-TGAATTGCTATATGTATGTTGCGAATCTAGTTCTATCTCTTCTAACTCCAAAAGGTTCCCTAATTAATTATAAGAAT-ATGAATT-------------------
gi|20 : aagtTTT-TAAAATTGCCATACCATTTTGAATATTTTACAA-CAA-A-AAAAGATCGACAAT---ACACATG-------TACA---------------TTA-ATACCAATGTGTGTTTT-AG-AGTGTAA--A--A------GTA-------A-CA-TATA--GAA--T--AAG--TAA-----AT-AGT
gi|21 : TATAGAATTGTCATAC-ATTATGAGTAATTTAACA-CAG-GTACAGATG----TAT---ACA---A-------TACT---------------TGA-ATATTATT-TGTGTTTACAG-AGTGTAC--ACGAAGC---GTA-------G-CATTATC--AAA--TTATAG--TAA--A--A
gi|22 : ATAAAATTGCTATAC-ATTTTGAGTATTTCACAT-CAT-ATATAAATT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGCTTTCCG-AGTGTAC--A--A------GTA-------G-CA-TATA--GAA--TA---------------------CATTATTACTTGTa
gi|23 : --A----AAAA-----CGTC-CACATTAGTGAAGAAAAGAT-TGAA--------------------T--CTATGTTT-TAT-G-----CAT-TA---GGC--AG-GGA-ATCACCCCCC---CCCCCT---TAACA--A-CAGA-TGCAAGT-C
gi|24 : attttgtatTTTATAGAA--GGCATAC-ATTTTGTGCATTTTACAACCAT-ATATAAGTT----AA---------------------A---------------TTAGATA-CAA--TGCGTGTCCAG-AG-GCAA--T--A------TTA-------AGCA-TATA--GAA--TAAtcaaaaaataa
gi|25 : tatgcacagtaaAAATATTTTGGTGTTTT--AACAACA----ATA---ATTTAGCAGACATTTCTTTAAAATTTTAATAGAAGTGGC----TTCCCTC---GTATAAACACC-ATAA-CATTCTAATTTCTG
gi|26 : tgct-ATACCAAT-TATGTTTTCAG-AGTGTAC--A--A------GTA-------A-CA-AATA--GAA--TAAAAG--TAA--G--AC-AGTACATTATTACTTGTTT-------TTAG---A----AAAA-----CGAC-CATATTCACCAAGAAAAg
gi|27 : --TAAAAG--TAAATG--AT-ACTAAAT-ATC-----CTT-------TTAGA--ATAGAAAAA-----CGAC-CAAACTCTTTTAGAGAAGAT-TGACTAAC--CTT----GAAAAGTT--CTGAATTT-TAT-A-----CAC-CA---AAA--Ataa
gi|28 : AGTAGCA-TATCCAGAA---ATAGTGCTTCTAA
gi|3 : -CACATTCATTACGAAAAGAT-TGAACAAC--TTC----AAA--------TAC---------------CAT-C-----------------CCATCCCCCACCCACCCCCTTTAGCA--A-CAGA-TGCAAGT-C--T-A---TAAATG------------TACAAGTTATT------------GAAATCTAGGA-G-------T-ATATTTGTTC-----ATTAAAA-CATA-TCTTGCCACTGCATATT--TTTTTTTACATACAATTAGAAGACTTCGATCTACAT-GAA--------------------------CCCTTCCACATGAACAATTTGGATTATCTA--ATAA-GTTGCAACAATGTAAATCTGATTTAACAATACAATTGTGTTTTACCCTAATGTG------ATTTAATTTTAAAAATCTTTT--TCCCACATGAGAAATAT-------------------------TG---TTTT-GCATATATTTCTTAAAAGTTTTAAAGG-ATTTGCTAAATTCCCTTTAAGTGTG
gi|4 : ATAGGATTGCCATAC-ATTTTGAGTATTTTACAA-TAT-ATACAAGTT----AGT---GCA---A-------TACA---------------TCA-ATACAAAT-TGTG-TTTCAA-GGTGTAC--A--AGTATATGTA-------A-CA-TATA--GAA--TATAAG--TAA--G--AT-AGTGCATTATTATTTGTCG-------TTAG---A----AAAA-----CGAC-CGCATTCACCAAGAAAAGAT-TGAATAAT--TTTTGAAGAAAAGTTGCTTACATTT-TGA-AAAAGTCAT-CATTTGAACCAGAAGATTTCATTCCCT---C--------TAAGAGTA-CAAA-TGCACAT-CGAT-A---T-AAT-------------------------------------AA---TGATA-T-------TAA-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGTATATT--G---TTT---T-CA-----------------GACAA-AAA--------------------------C------ttccata
gi|5 : ACAAAATTACCATAC-ATTTTGAGTATTCTAC--------TA---GTT----AAT---GCA---A-------TACA---------------TTA-ATACCAAT-TGTGTTTTCAG-AATGTAC--T--A------GTA-------A-C---ATA--GAA--TAAAAG--TAA--GATAT-AATACATTG--ATTT-TTA-------TTAAAAGA----AAAA-----CGAC-CACGTTCACTAAG-AAAGAT-TAAATAACTTTTT----GAAAAGTTTCTTACGTTT-TGT-------CAT-GA---GAAG-AA-AGATTTCA-TCCCC---CA-------TAACG--A-TAAA-TGCACAT-CAATGACTTTAAATA------------TA----ACATTTATAATGTATCGGAA---TGATA-GTACACTTT-A-ATTTGTTTGTTGGGTTAAGCAAATGTTCTAGCAGTAGAATATT--T---TTT---TACC-----------------CACAACAAA--------------------------G------A-ATAAACAAcaaatggtaagcacaggcgat
gi|6 : AAAGATTTAATGGAAGTTGC----TTCCCTT---GTGTGGATACT-TAGATTATTCCAATTTCTGACAGTGTCAGGAATAAAGGATTT----ATTG-A-ATATTTCCAG---C---CTTCATTTTGG------TAAT--T-CAT----A-------GAATTTCGAGTAGCA-TATCCAGAA---ATCGTGCTTCTAATAGTTGGTGTAATATTC---TGTAGAT--AAA--AGAGGTACTAAATTAT---T---------GTGTAT-C---TTG-TACAA---AGTGACATGCTTAGCTCTATTTCTTCTAACTTCTAAAGGGTTCCAGCCTGTTTCTAAAAATAATGAATT-------------------AGTTACGATTCTGGCTGCATGTAATTGAAC---TTTCTCTAATTTTTCTATTTCCGCTTTTGTGCACCCAGACCA
gi|7 : AATTGCCATAC-GTTTTGGAT---TTACA--CTT-ATACAAGTT----AGT---GCA---A-------TCAA---------------TCA-ATACAAAT--GTGTTT-CAGCAGTGTAC--A--A------GTACATGTTAA-CA-TATA--GAA--TATAAG--TAA--G--ATCAGTGCATT-TTATTTGTCT-------TTAGA--A----AAA------CGACGCAGAT-CACCAAGAAA-GATGTGAATAAA--TTT----TGAAAGTT---TACATTT-TGA-A-----CAT-CA---GAA--AG-AGAATTCATTCCCC---TC-------TAAGA--GGTAAAATGCACAT--GAT-A---TAAATA-------------------------------------A---TGATATA-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAGTAGT-TATTTGT---TTT---TACA-----------------GAC-A-AAA--------------------------C------ACA-GAA
gi|8 : ataggGCCATAC-ATTTTGAGTATTTTAC---CAT-TTACACATT----AATTATGCA---A-------TACACATGTAAA-------TTA-ATTCCAGT-TGTGTTTT-AG-AGTGTAC--A--A------GTA-------A-CT-TATA--GA---TAAAAG--TAA--G--AT-AGTGCATTA---CTTGTTT-------TTAGA--A----AA-A-----CGAC-CACATTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CAACATTT-TGA-A-----CAT-CA---GAA--AG-AGA-TTCATTCCCC---CA-------TAACA--A-TAAA-TGCACAT-CAATAA---TAAATA------------TA----TCGTT------------GAA---TGAAC-G-------T-A-ATTTGTTC-----ATTAAAC-AATG-TCTAGCAG
gi|9 : AAAATTGC-A-AC-ATTTTTAGTATTTTACAA-CAT-TTACAAATT----AAT---GCA---A-------TACACATGTACATAAATGATTT-ATAC-AAT-TGTGTTTT-AG-AGTGTAC--A--A------GTA-------A-CA-TATA--GAA--TAAA---------------------TTATTACTTGTTT-------TTAGA--A----AAAA-----CGAC-CACGTTCATCAAGAAAAGAT-TGAATAAC--TTT----GAAAAGTT--CGACATTT-TGA-G-----CTT-TA---GAA--AG-AGA-TTCATTCCCC---CA-------TAACA--A-T